Query 028538
Match_columns 207
No_of_seqs 130 out of 287
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 13:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4259 Putative nucleic acid- 99.8 2.2E-19 4.8E-24 157.1 10.0 127 52-183 106-259 (260)
2 KOG4259 Putative nucleic acid- 99.5 1E-14 2.2E-19 128.0 7.7 87 73-162 148-259 (260)
3 KOG1861 Leucine permease trans 24.1 50 0.0011 33.0 2.0 24 163-186 229-252 (540)
4 PF06884 DUF1264: Protein of u 12.4 1.8E+02 0.0039 25.1 2.4 13 127-139 146-158 (171)
5 PF02042 RWP-RK: RWP-RK domain 11.8 1.3E+02 0.0028 21.1 1.1 11 128-138 32-42 (52)
6 PF15178 TOM_sub5: Mitochondri 10.2 2.7E+02 0.0059 19.6 2.3 18 158-176 6-23 (51)
7 PF10642 Tom5: Mitochondrial i 8.8 3.4E+02 0.0073 18.9 2.3 18 89-106 2-20 (49)
8 KOG1861 Leucine permease trans 7.5 2.5E+02 0.0055 28.2 1.7 13 145-157 232-244 (540)
9 PF05673 DUF815: Protein of un 7.4 4.1E+02 0.0089 24.1 2.9 9 131-139 206-214 (249)
10 COG1149 MinD superfamily P-loo 6.5 4.4E+02 0.0095 24.6 2.6 49 58-111 187-241 (284)
No 1
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.2e-19 Score=157.12 Aligned_cols=127 Identities=35% Similarity=0.401 Sum_probs=78.8
Q ss_pred ccCCCCCcceeecCCCCCCCCCCCCChHHHHHHHHh---hhCCCCCCCh---HHHHHHHHhhhCCCCCCCC-------C-
Q 028538 52 KNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAE---RFGMPVQMSE---EEKRNTRAERFGTGSKTQG-------S- 117 (207)
Q Consensus 52 k~~~~~kk~vkIt~~~~~~~~~~~lSe~EKk~~RAe---RFGip~~lse---~eKkk~RAeRFGl~~~~~~-------s- 117 (207)
+....++++|.|+++.-. .....+.....|++ ||++|+++.+ .+++..||+||||++.... +
T Consensus 106 k~~~~Eks~v~~tstgk~----~E~paet~~~srae~~~rf~~Pvvae~k~a~e~laaRAkRFgIp~d~t~i~sadnKas 181 (260)
T KOG4259|consen 106 KIISKEKSQVPETSTGKE----AEEPAETTEESRAEVSNRFSSPVVAEEKTAQEKLAARAKRFGIPVDDTQIKSADNKAS 181 (260)
T ss_pred hhhhhccccccccccccc----cccchhhhhhhhcccccccCCCcccccccchHHHHHHHHhcCCCCchHHHHhhccchh
Confidence 334457788888774311 12233444555555 5555554422 2555555555555532210 0
Q ss_pred -------CcccchHHHHHHHHHhhhCCCCCCC--cc---hHHHHHHHHhhhcCCCCCCCchHHHHH-HHHHhccCCCCC
Q 028538 118 -------EVSKTSEELKRKARAERFGLPVPSS--VS---EEEAKRKARLARFAPYPKTDSVEEDKR-KARALRFSKTSS 183 (207)
Q Consensus 118 -------~~~k~~eeeKlKkRAERFG~~~s~~--~~---~eeeKkkkRaERFG~~~~~d~eeE~Kk-kkRAeRFG~~~s 183 (207)
.+......++||+||+|||++|++. .. +-..|+++|++||| +...+.+.|+|| ++|+||||...+
T Consensus 182 ~a~~fG~~~~~p~a~dklk~rAqrfg~~v~s~Sr~s~~de~~~kl~arkkRfg-gtitde~tEAKKaRaRaERFgtA~~ 259 (260)
T KOG4259|consen 182 SAANFGNKIQQPLASDKLKNRAQRFGPQVRSNSRSSQRDENAPKLSARKKRFG-GTITDEPTEAKKARARAERFGTAAK 259 (260)
T ss_pred hhhhcCCcccchhhhHHHHHHHHhcCCCCCcccccCccccccchhhhhHHhcC-CCCCCchhhHHHHHHHHHHhcccCC
Confidence 0111245679999999999999864 11 22359999999999 344577888888 999999998654
No 2
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1e-14 Score=128.03 Aligned_cols=87 Identities=37% Similarity=0.523 Sum_probs=62.0
Q ss_pred CCCCChHHHHHHHHhhhCCCCCC-----------------------ChHHHHHHHHhhhCCCCCCCCCCcccc-hHHHHH
Q 028538 73 ADLVTDTQKKIRRAERFGMPVQM-----------------------SEEEKRNTRAERFGTGSKTQGSEVSKT-SEELKR 128 (207)
Q Consensus 73 ~~~lSe~EKk~~RAeRFGip~~l-----------------------se~eKkk~RAeRFGl~~~~~~s~~~k~-~eeeKl 128 (207)
.-+.+..+++.+||+|||||+.. -..++++.||+|||++++.. |..++. ...-+|
T Consensus 148 ae~k~a~e~laaRAkRFgIp~d~t~i~sadnKas~a~~fG~~~~~p~a~dklk~rAqrfg~~v~s~-Sr~s~~de~~~kl 226 (260)
T KOG4259|consen 148 AEEKTAQEKLAARAKRFGIPVDDTQIKSADNKASSAANFGNKIQQPLASDKLKNRAQRFGPQVRSN-SRSSQRDENAPKL 226 (260)
T ss_pred cccccchHHHHHHHHhcCCCCchHHHHhhccchhhhhhcCCcccchhhhHHHHHHHHhcCCCCCcc-cccCccccccchh
Confidence 34566778999999999999632 13789999999999987533 222221 122489
Q ss_pred HHHHhhhCCCCCCCcchHHHHH-HHHhhhcCCCCC
Q 028538 129 KARAERFGLPVPSSVSEEEAKR-KARLARFAPYPK 162 (207)
Q Consensus 129 KkRAERFG~~~s~~~~~eeeKk-kkRaERFG~~~~ 162 (207)
++|++|||...- ....|.|+ ++|+||||+.++
T Consensus 227 ~arkkRfggtit--de~tEAKKaRaRaERFgtA~~ 259 (260)
T KOG4259|consen 227 SARKKRFGGTIT--DEPTEAKKARARAERFGTAAK 259 (260)
T ss_pred hhhHHhcCCCCC--CchhhHHHHHHHHHHhcccCC
Confidence 999999993322 23556667 999999998653
No 3
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=24.14 E-value=50 Score=32.96 Aligned_cols=24 Identities=50% Similarity=0.566 Sum_probs=18.5
Q ss_pred CCchHHHHHHHHHhccCCCCCCcc
Q 028538 163 TDSVEEDKRKARALRFSKTSSSSV 186 (207)
Q Consensus 163 ~d~eeE~KkkkRAeRFG~~~s~s~ 186 (207)
..+|++++++.|++||...-+.+.
T Consensus 229 ~~~d~e~rr~~Ra~RF~~~~s~s~ 252 (540)
T KOG1861|consen 229 AGSDEEARRKRRARRFSQGGSRST 252 (540)
T ss_pred cCchHHHHHHHHHHHHhhcccccc
Confidence 367888999999999977665443
No 4
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=12.35 E-value=1.8e+02 Score=25.14 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=8.1
Q ss_pred HHHHHHhhhCCCC
Q 028538 127 KRKARAERFGLPV 139 (207)
Q Consensus 127 KlKkRAERFG~~~ 139 (207)
-.+.|=+|||+.+
T Consensus 146 lv~~RD~r~gv~t 158 (171)
T PF06884_consen 146 LVKERDERFGVDT 158 (171)
T ss_pred HHHHHHHhcCCCH
Confidence 4566667777653
No 5
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=11.81 E-value=1.3e+02 Score=21.09 Aligned_cols=11 Identities=45% Similarity=0.899 Sum_probs=6.0
Q ss_pred HHHHHhhhCCC
Q 028538 128 RKARAERFGLP 138 (207)
Q Consensus 128 lKkRAERFG~~ 138 (207)
+|++.-++||.
T Consensus 32 LKr~CR~~GI~ 42 (52)
T PF02042_consen 32 LKRRCRRLGIP 42 (52)
T ss_pred HHHHHHHcCCC
Confidence 45555566653
No 6
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=10.16 E-value=2.7e+02 Score=19.61 Aligned_cols=18 Identities=44% Similarity=0.377 Sum_probs=10.7
Q ss_pred CCCCCCCchHHHHHHHHHh
Q 028538 158 APYPKTDSVEEDKRKARAL 176 (207)
Q Consensus 158 G~~~~~d~eeE~KkkkRAe 176 (207)
|.+++.|++|. |++.|.+
T Consensus 6 gl~pk~DPeE~-k~kmR~d 23 (51)
T PF15178_consen 6 GLGPKMDPEEM-KRKMRED 23 (51)
T ss_pred cCCCCCCHHHH-HHHHHHH
Confidence 45566677554 6666654
No 7
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=8.84 E-value=3.4e+02 Score=18.88 Aligned_cols=18 Identities=50% Similarity=0.641 Sum_probs=10.9
Q ss_pred hCCC-CCCChHHHHHHHHh
Q 028538 89 FGMP-VQMSEEEKRNTRAE 106 (207)
Q Consensus 89 FGip-~~lse~eKkk~RAe 106 (207)
||.+ ..+|+++++...++
T Consensus 2 Fgg~~~qpS~eE~k~~e~~ 20 (49)
T PF10642_consen 2 FGGPPPQPSEEEIKAAEAQ 20 (49)
T ss_pred CCCCCCCCCHHHHHHHHHH
Confidence 6663 45577776666555
No 8
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=7.46 E-value=2.5e+02 Score=28.24 Aligned_cols=13 Identities=62% Similarity=0.946 Sum_probs=6.6
Q ss_pred hHHHHHHHHhhhc
Q 028538 145 EEEAKRKARLARF 157 (207)
Q Consensus 145 ~eeeKkkkRaERF 157 (207)
+++++++.|+.||
T Consensus 232 d~e~rr~~Ra~RF 244 (540)
T KOG1861|consen 232 DEEARRKRRARRF 244 (540)
T ss_pred hHHHHHHHHHHHH
Confidence 4444555555555
No 9
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=7.41 E-value=4.1e+02 Score=24.13 Aligned_cols=9 Identities=56% Similarity=0.958 Sum_probs=4.3
Q ss_pred HHhhhCCCC
Q 028538 131 RAERFGLPV 139 (207)
Q Consensus 131 RAERFG~~~ 139 (207)
=++++|+..
T Consensus 206 ~~~~~g~~~ 214 (249)
T PF05673_consen 206 YAERYGLEL 214 (249)
T ss_pred HHHHcCCCC
Confidence 344555543
No 10
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=6.50 E-value=4.4e+02 Score=24.57 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=34.0
Q ss_pred CcceeecCCCCCCCCCCCCChHHHHHHHHhhhCCCCCC------ChHHHHHHHHhhhCCC
Q 028538 58 KTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQM------SEEEKRNTRAERFGTG 111 (207)
Q Consensus 58 kk~vkIt~~~~~~~~~~~lSe~EKk~~RAeRFGip~~l------se~eKkk~RAeRFGl~ 111 (207)
..+|-+|+|+|. -+.|..|...=.++||+|... .....-..++..-|++
T Consensus 187 D~ai~VTEPTp~-----glhD~kr~~el~~~f~ip~~iViNr~~~g~s~ie~~~~e~gi~ 241 (284)
T COG1149 187 DLAILVTEPTPF-----GLHDLKRALELVEHFGIPTGIVINRYNLGDSEIEEYCEEEGIP 241 (284)
T ss_pred CEEEEEecCCcc-----chhHHHHHHHHHHHhCCceEEEEecCCCCchHHHHHHHHcCCC
Confidence 457778888776 788899999999999998631 0111455666666654
Done!