Query 028538
Match_columns 207
No_of_seqs 130 out of 287
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 21:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lsj_B DNA polymerase kappa; R 6.1 1.8E+02 0.0062 17.1 0.0 6 129-134 12-17 (26)
2 3cra_A Protein MAZG; tandem-re 3.8 8.5E+02 0.029 20.9 3.9 14 126-139 148-161 (265)
3 3zs9_C Golgi to ER traffic pro 3.7 5.4E+02 0.018 16.3 1.9 8 75-82 3-10 (38)
4 3ogk_Q JAZ1 incomplete degron 3.3 5.5E+02 0.019 14.4 1.5 10 128-137 9-18 (22)
5 2iel_A Hypothetical protein TT 3.2 3.4E+02 0.012 21.5 0.7 11 83-93 120-130 (138)
6 2esy_A LUNG surfactant protein 2.8 3.5E+02 0.012 16.5 0.3 6 88-93 12-17 (32)
7 1tc3_C Protein (TC3 transposas 2.6 3.8E+02 0.013 14.7 0.3 7 105-111 28-34 (51)
8 1m5i_A APC protein; coiled-coi 2.6 7.2E+02 0.025 19.4 1.9 6 133-138 77-82 (125)
9 1b0n_B Protein (SINI protein); 2.5 7.3E+02 0.025 16.5 1.7 12 81-92 17-28 (57)
10 4eu0_A PELD; C-DI-GMP, signali 2.3 5.8E+02 0.02 22.1 1.2 15 80-94 172-186 (298)
No 1
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=6.05 E-value=1.8e+02 Score=17.10 Aligned_cols=6 Identities=67% Similarity=0.938 Sum_probs=3.4
Q ss_pred HHHHhh
Q 028538 129 KARAER 134 (207)
Q Consensus 129 KkRAER 134 (207)
|||+||
T Consensus 12 KKRser 17 (26)
T 2lsj_B 12 KKRSER 17 (26)
Confidence 456665
No 2
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=3.77 E-value=8.5e+02 Score=20.92 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=7.4
Q ss_pred HHHHHHHhhhCCCC
Q 028538 126 LKRKARAERFGLPV 139 (207)
Q Consensus 126 eKlKkRAERFG~~~ 139 (207)
.|+.+||.|.|..-
T Consensus 148 ~kiq~raa~vGfdw 161 (265)
T 3cra_A 148 QKIQKRCANVGFDW 161 (265)
T ss_dssp HHHHHHHHTTTCSC
T ss_pred HHHHHHHHhcCCCC
Confidence 35555555555543
No 3
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=3.73 E-value=5.4e+02 Score=16.28 Aligned_cols=8 Identities=25% Similarity=0.518 Sum_probs=3.6
Q ss_pred CCChHHHH
Q 028538 75 LVTDTQKK 82 (207)
Q Consensus 75 ~lSe~EKk 82 (207)
+||+.|+.
T Consensus 3 els~~eka 10 (38)
T 3zs9_C 3 ELTEAEKR 10 (38)
T ss_dssp -CCHHHHH
T ss_pred ccCHHHHH
Confidence 45555543
No 4
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=3.34 E-value=5.5e+02 Score=14.38 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=4.8
Q ss_pred HHHHHhhhCC
Q 028538 128 RKARAERFGL 137 (207)
Q Consensus 128 lKkRAERFG~ 137 (207)
+.||.+|++.
T Consensus 9 leKRk~R~~~ 18 (22)
T 3ogk_Q 9 LEKRKDRVTS 18 (26)
T ss_pred HHHHHHHhhc
Confidence 3455555543
No 5
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=3.24 E-value=3.4e+02 Score=21.54 Aligned_cols=11 Identities=64% Similarity=1.126 Sum_probs=8.7
Q ss_pred HHHHhhhCCCC
Q 028538 83 IRRAERFGMPV 93 (207)
Q Consensus 83 ~~RAeRFGip~ 93 (207)
..||.+||+|+
T Consensus 120 asrAr~~gvPV 130 (138)
T 2iel_A 120 HTQAERFGLPV 130 (138)
T ss_dssp HHHGGGGSSCE
T ss_pred HHHHHhcCCCE
Confidence 45888899986
No 6
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=2.79 E-value=3.5e+02 Score=16.49 Aligned_cols=6 Identities=67% Similarity=1.580 Sum_probs=4.0
Q ss_pred hhCCCC
Q 028538 88 RFGMPV 93 (207)
Q Consensus 88 RFGip~ 93 (207)
|||||-
T Consensus 12 rf~IPc 17 (32)
T 2esy_A 12 RFGIPF 17 (32)
T ss_dssp SSSCCS
T ss_pred cccCcc
Confidence 677764
No 7
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=2.63 E-value=3.8e+02 Score=14.71 Aligned_cols=7 Identities=0% Similarity=0.278 Sum_probs=5.2
Q ss_pred HhhhCCC
Q 028538 105 AERFGTG 111 (207)
Q Consensus 105 AeRFGl~ 111 (207)
|+.||++
T Consensus 28 A~~lgis 34 (51)
T 1tc3_C 28 SRKISRS 34 (51)
T ss_dssp HHHHTCC
T ss_pred HHHHCcC
Confidence 6778875
No 8
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=2.57 E-value=7.2e+02 Score=19.43 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=3.1
Q ss_pred hhhCCC
Q 028538 133 ERFGLP 138 (207)
Q Consensus 133 ERFG~~ 138 (207)
+|||..
T Consensus 77 Er~Gt~ 82 (125)
T 1m5i_A 77 EQLGTC 82 (125)
T ss_dssp HHHCCS
T ss_pred HHhccc
Confidence 455554
No 9
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=2.50 E-value=7.3e+02 Score=16.54 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=9.5
Q ss_pred HHHHHHhhhCCC
Q 028538 81 KKIRRAERFGMP 92 (207)
Q Consensus 81 Kk~~RAeRFGip 92 (207)
+...||+++|++
T Consensus 17 ~LI~~Ak~lGls 28 (57)
T 1b0n_B 17 ELMVEAKEANIS 28 (57)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 466799999986
No 10
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=2.33 E-value=5.8e+02 Score=22.08 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=11.0
Q ss_pred HHHHHHHhhhCCCCC
Q 028538 80 QKKIRRAERFGMPVQ 94 (207)
Q Consensus 80 EKk~~RAeRFGip~~ 94 (207)
+|...||+|||++.+
T Consensus 172 ~r~~~~a~~~gi~ss 186 (298)
T 4eu0_A 172 KRSLLDARDHGLPAC 186 (298)
T ss_dssp HHHHHHHHHHCCCEE
T ss_pred HHHHHHHHhcCCCeE
Confidence 356668888888864
Done!