Query 028538
Match_columns 207
No_of_seqs 130 out of 287
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 21:52:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028538.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028538hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okga3 d.26.1.3 (A:302-373) 3 10.9 46 0.0034 22.1 1.4 16 20-35 8-23 (72)
2 d2iela1 c.26.2.4 (A:2-135) Hyp 8.3 49 0.0036 24.5 0.7 11 83-93 119-129 (134)
3 d1kjqa3 d.142.1.2 (A:113-318) 6.0 2.1E+02 0.015 19.5 3.3 32 80-111 3-39 (206)
4 d2gz4a1 a.211.1.1 (A:6-205) Hy 5.7 1.8E+02 0.013 22.3 2.9 22 77-98 103-126 (200)
5 d1hlva1 a.4.1.7 (A:1-66) DNA-b 5.0 90 0.0065 20.0 0.6 32 103-138 30-62 (66)
6 d1woqa1 c.55.1.10 (A:11-139) I 4.6 1.3E+02 0.0094 19.5 1.2 26 85-110 100-126 (129)
7 d1z6ra2 c.55.1.10 (A:82-210) M 4.3 1.4E+02 0.01 19.4 1.2 29 82-110 98-127 (129)
8 d1o57a1 a.4.5.40 (A:2-74) N-te 4.0 89 0.0065 20.8 -0.1 15 191-206 54-68 (73)
9 d2lhba_ a.1.1.2 (A:) Lamprey g 2.9 4.1E+02 0.03 17.7 2.8 19 68-86 3-21 (149)
10 d1nexa1 a.157.1.1 (A:116-185) 2.7 2.4E+02 0.017 17.7 1.1 15 87-101 53-67 (70)
No 1
>d1okga3 d.26.1.3 (A:302-373) 3-mercaptopyruvate sulfurtransferase, C-terminal domain {Leishmania major [TaxId: 5664]}
Probab=10.89 E-value=46 Score=22.06 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=13.9
Q ss_pred CcCCCCCCCCCCCCCC
Q 028538 20 ASAEGNPKNNVGPMDL 35 (207)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (207)
.+..+||+-+||.+++
T Consensus 8 p~LgdNpKA~ld~~Tl 23 (72)
T d1okga3 8 PSLGDNPKANLDTMTL 23 (72)
T ss_dssp CCCTTSCBCCTTTCCE
T ss_pred cccCCCchhcccceEE
Confidence 3578999999999987
No 2
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus thermophilus [TaxId: 274]}
Probab=8.26 E-value=49 Score=24.51 Aligned_cols=11 Identities=64% Similarity=1.126 Sum_probs=8.7
Q ss_pred HHHHhhhCCCC
Q 028538 83 IRRAERFGMPV 93 (207)
Q Consensus 83 ~~RAeRFGip~ 93 (207)
-.||.|||+|+
T Consensus 119 ~~raRr~~lPV 129 (134)
T d2iela1 119 HTQAERFGLPV 129 (134)
T ss_dssp HHHGGGGSSCE
T ss_pred HHHHHHcCCCe
Confidence 44788999986
No 3
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}
Probab=5.98 E-value=2.1e+02 Score=19.47 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=19.9
Q ss_pred HHHHHHH-hhhCCCCCC----ChHHHHHHHHhhhCCC
Q 028538 80 QKKIRRA-ERFGMPVQM----SEEEKRNTRAERFGTG 111 (207)
Q Consensus 80 EKk~~RA-eRFGip~~l----se~eKkk~RAeRFGl~ 111 (207)
||..+.| +..|||++- ...+-...=++++|.|
T Consensus 3 ~~~rrla~~~~Gip~p~~~~v~s~~dl~~~~~~ig~P 39 (206)
T d1kjqa3 3 EGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYP 39 (206)
T ss_dssp HHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCCCCeEECCHHHHHHHHHHhCCC
Confidence 3443335 679999763 2344455568889976
No 4
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.67 E-value=1.8e+02 Score=22.30 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=13.0
Q ss_pred ChHHHHHHHH--hhhCCCCCCChH
Q 028538 77 TDTQKKIRRA--ERFGMPVQMSEE 98 (207)
Q Consensus 77 Se~EKk~~RA--eRFGip~~lse~ 98 (207)
-+.|.+...| .|||+|..++.+
T Consensus 103 ~~~E~rl~~aI~~rFGLp~~lp~~ 126 (200)
T d2gz4a1 103 KTVEKRLEAAVHLRFGLPPHASRE 126 (200)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHH
Confidence 3445544443 678888776654
No 5
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.00 E-value=90 Score=20.04 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=16.2
Q ss_pred HHHhhhCCCCCCCCCCcccc-hHHHHHHHHHhhhCCC
Q 028538 103 TRAERFGTGSKTQGSEVSKT-SEELKRKARAERFGLP 138 (207)
Q Consensus 103 ~RAeRFGl~~~~~~s~~~k~-~eeeKlKkRAERFG~~ 138 (207)
.=|..||++. |+++.- -..++...-.++||..
T Consensus 30 eIA~~fGv~~----STvs~IlKnK~kil~~~~~~g~~ 62 (66)
T d1hlva1 30 EIARRFNIPP----STLSTILKNKRAILASERKYGVA 62 (66)
T ss_dssp HHHHHHTCCH----HHHHHHHHTHHHHHHHHHHHGGG
T ss_pred HHHHHhCCCh----hHHHHHHHHHHHHHHHHHHcCcc
Confidence 3477888862 122110 1233555566777754
No 6
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=4.65 E-value=1.3e+02 Score=19.50 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=18.1
Q ss_pred HHhhhCCCCCCChHHHHHHHHhh-hCC
Q 028538 85 RAERFGMPVQMSEEEKRNTRAER-FGT 110 (207)
Q Consensus 85 RAeRFGip~~lse~eKkk~RAeR-FGl 110 (207)
=.++||+|+.+..+.....-||+ ||.
T Consensus 100 l~~~~~~pv~i~NDan~aalgE~~~Ga 126 (129)
T d1woqa1 100 LTARLGRPVEVINDADAAGLAEARYGA 126 (129)
T ss_dssp HHHHHTSCEEEEEHHHHHHHHHHHHST
T ss_pred HHHhcCCcEEEEEhHHHHHHHHHhhcc
Confidence 34668888877667777777764 664
No 7
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=4.29 E-value=1.4e+02 Score=19.36 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=19.0
Q ss_pred HHHHHhhhCCCCCCChHHHHHHHHh-hhCC
Q 028538 82 KIRRAERFGMPVQMSEEEKRNTRAE-RFGT 110 (207)
Q Consensus 82 k~~RAeRFGip~~lse~eKkk~RAe-RFGl 110 (207)
+..=.++||+|+.+..+-.-...+| +||.
T Consensus 98 ~~~l~~~~~~pV~~~NDa~a~alaE~~~G~ 127 (129)
T d1z6ra2 98 GEALEQHTGVPVYIQHDISAWTMAEALFGA 127 (129)
T ss_dssp HHHHHHHHSSCEEEEEHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCCEEEEehHHHHHHHHHhhCC
Confidence 3344568888887766666666666 3554
No 8
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]}
Probab=3.98 E-value=89 Score=20.75 Aligned_cols=15 Identities=40% Similarity=0.767 Sum_probs=7.6
Q ss_pred CCccchhhhccccCCC
Q 028538 191 GKGNIEAAITGEADGV 206 (207)
Q Consensus 191 ~~~~~~~~~~~~~~~~ 206 (207)
+.|.|| -|+|-||||
T Consensus 54 ~~G~le-Ti~GAaGGv 68 (73)
T d1o57a1 54 GIGTLL-TVPGAAGGV 68 (73)
T ss_dssp TSEEEE-EECSTTCEE
T ss_pred CCCeEE-EecCCCCCe
Confidence 344444 245666665
No 9
>d2lhba_ a.1.1.2 (A:) Lamprey globin {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}
Probab=2.87 E-value=4.1e+02 Score=17.75 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=12.8
Q ss_pred CCCCCCCCCChHHHHHHHH
Q 028538 68 PVSGDADLVTDTQKKIRRA 86 (207)
Q Consensus 68 ~~~~~~~~lSe~EKk~~RA 86 (207)
.++....+||+.|+...|.
T Consensus 3 ~~~~~~~~Ls~~e~~~I~~ 21 (149)
T d2lhba_ 3 VDTGSVAPLSAAEKTKIRS 21 (149)
T ss_dssp CSSSCCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHH
Confidence 3444556799998777654
No 10
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.71 E-value=2.4e+02 Score=17.74 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=8.5
Q ss_pred hhhCCCCCCChHHHH
Q 028538 87 ERFGMPVQMSEEEKR 101 (207)
Q Consensus 87 eRFGip~~lse~eKk 101 (207)
+.|||+...+.+|..
T Consensus 53 ~~f~I~~D~t~eEe~ 67 (70)
T d1nexa1 53 RTFNIVNDFTPEEEA 67 (70)
T ss_dssp HHHTCCCCCCHHHHH
T ss_pred HHhCCCCCCCHHHHH
Confidence 456776655555443
Done!