BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028539
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I +NELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 32 FQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 90
Query: 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201
+ W+ +F YDRD SG ID EL+ AL GY + +L+ K+D R G + ++
Sbjct: 91 YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD-RQGRGQ--IA 147
Query: 202 FDSFVE 207
FD F++
Sbjct: 148 FDDFIQ 153
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
F DRD SG ID+NEL+QALS R S +L+ F + +I +F
Sbjct: 99 FRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF-DRQGRGQIAFDDFIQGCIV 157
Query: 143 LGQWRAIFERYDRDRSGKIDL 163
L + IF RYD D+ G I +
Sbjct: 158 LQRLTDIFRRYDTDQDGWIQV 178
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVP--PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+F+R D+DRSG I EL+ AL S G P P ++ ++ +D + K G++F F
Sbjct: 31 VFQRVDKDRSGVISDNELQQAL-SNGTWTPFNPVTVRSIISMFDREN---KAGVNFSEFT 86
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 13 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 71
Query: 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201
+ W+ +F YDRD SG ID EL+ AL GY + +L+ K+D R G + ++
Sbjct: 72 YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD-RQGRGQ--IA 128
Query: 202 FDSFVE 207
FD F++
Sbjct: 129 FDDFIQ 134
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
F DRD SG ID+NEL+QALS R S +L+ F + +I +F
Sbjct: 80 FRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF-DRQGRGQIAFDDFIQGCIV 138
Query: 143 LGQWRAIFERYDRDRSGKIDL 163
L + IF RYD D+ G I +
Sbjct: 139 LQRLTDIFRRYDTDQDGWIQV 159
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVP--PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+F+R D+DRSG I EL+ AL S G P P ++ ++ +D + K G++F F
Sbjct: 12 VFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDREN---KAGVNFSEFT 67
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 9 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 67
Query: 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201
+ W+ +F YDRD SG ID EL+ AL GY + +L+ K+D R G + ++
Sbjct: 68 YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD-RQGRGQ--IA 124
Query: 202 FDSFVE 207
FD F++
Sbjct: 125 FDDFIQ 130
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
F DRD SG ID+NEL+QALS R S +L+ F + +I +F
Sbjct: 76 FRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF-DRQGRGQIAFDDFIQGCIV 134
Query: 143 LGQWRAIFERYDRDRSGKIDL 163
L + IF RYD D+ G I +
Sbjct: 135 LQRLTDIFRRYDTDQDGWIQV 155
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVP--PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+F+R D+DRSG I EL+ AL S G P P ++ ++ +D + K G++F F
Sbjct: 8 VFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDREN---KAGVNFSEFT 63
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 10 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 68
Query: 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201
+ W+ +F YDRD SG ID EL+ AL GY + +L+ K+D R G + ++
Sbjct: 69 YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD-RQGRGQ--IA 125
Query: 202 FDSFVE 207
FD F++
Sbjct: 126 FDDFIQ 131
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
F DRD SG ID+NEL+QALS R S +L+ F + +I +F
Sbjct: 77 FRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF-DRQGRGQIAFDDFIQGCIV 135
Query: 143 LGQWRAIFERYDRDRSGKIDL 163
L + IF RYD D+ G I +
Sbjct: 136 LQRLTDIFRRYDTDQDGWIQV 156
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVP--PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+F+R D+DRSG I EL+ AL S G P P ++ ++ +D + K G++F F
Sbjct: 9 VFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDREN---KAGVNFSEFT 64
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 31 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 89
Query: 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201
+ W+ +F YDRD SG ID EL+ AL GY + +L+ K+D R G + ++
Sbjct: 90 YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFD-RQGRGQ--IA 146
Query: 202 FDSFVE 207
FD F++
Sbjct: 147 FDDFIQ 152
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
F DRD SG ID+NEL+QALS R S +L+ F + +I +F
Sbjct: 98 FRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF-DRQGRGQIAFDDFIQGCIV 156
Query: 143 LGQWRAIFERYDRDRSGKIDL 163
L + IF RYD D+ G I +
Sbjct: 157 LQRLTDIFRRYDTDQDGWIQV 177
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVP--PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+F+R D+DRSG I EL+ AL S G P P ++ ++ +D + K G++F F
Sbjct: 30 VFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDREN---KAGVNFSEFT 85
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 13 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 71
Query: 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201
+ W+ +F YDRD SG ID EL+ AL GY + +L+ K+D R G + ++
Sbjct: 72 YITDWQNVFRTYDRDNSGMIDKNELKQALSGAGYRLSDQFHDILIRKFD-RQGRGQ--IA 128
Query: 202 FDSFVE 207
FD F++
Sbjct: 129 FDDFIQ 134
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
F DRD SG ID+NEL+QALS R S +L+ F + +I +F
Sbjct: 80 FRTYDRDNSGMIDKNELKQALSGAGYRLSDQFHDILIRKF-DRQGRGQIAFDDFIQGCIV 138
Query: 143 LGQWRAIFERYDRDRSGKIDL 163
L + IF RYD D+ G I +
Sbjct: 139 LQRLTDIFRRYDTDQDGWIQV 159
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVP--PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+F+R D+DRSG I EL+ AL S G P P ++ ++ +D + K G++F F
Sbjct: 12 VFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDREN---KAGVNFSEFT 67
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 83 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
F+ VD+DRSG I + ELQQALS+G + F+ T+R ++ +F + + + EF +W
Sbjct: 10 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWK 68
Query: 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLS 201
+ W+ +F YDRD SG ID EL+ AL GY + +L+ K+D R G + ++
Sbjct: 69 YITDWQNVFRTYDRDNSGMIDKNELKQALS--GYRLSDQFHDILIRKFD-RQGRGQ--IA 123
Query: 202 FDSFVE 207
FD F++
Sbjct: 124 FDDFIQ 129
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
F DRD SG ID+NEL+QALS GY R S +L+ F + +I +F
Sbjct: 77 FRTYDRDNSGMIDKNELKQALS-GY-RLSDQFHDILIRKF-DRQGRGQIAFDDFIQGCIV 133
Query: 143 LGQWRAIFERYDRDRSGKIDL 163
L + IF RYD D+ G I +
Sbjct: 134 LQRLTDIFRRYDTDQDGWIQV 154
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVP--PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+F+R D+DRSG I EL+ AL S G P P ++ ++ +D + K G++F F
Sbjct: 9 VFQRVDKDRSGVISDTELQQAL-SNGTWTPFNPVTVRSIISMFDREN---KAGVNFSEFT 64
>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
Length = 198
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
Query: 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALS-----SGYQRFSLSTIRLLMFLFRNPHD 127
PG D + + + G ID +ELQ+ L+ GY+ F+L T RL++ +
Sbjct: 28 PGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM- 86
Query: 128 SLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMD 187
S +G EF +LW+ L WR F +D DRSG +D EL+ AL ++G+ + P + +
Sbjct: 87 SGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 146
Query: 188 KYDNRSGSRKLGLSFDSFV 206
+Y S ++FD ++
Sbjct: 147 RY-----STNGKITFDDYI 160
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 65 AYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124
Y SA + +++ F VD D SG I EL ALSS FSL+T L+ ++
Sbjct: 15 VYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDK 74
Query: 125 PHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQL 184
H S I EF DL + R F + D G++D E+R AL S GY V Q
Sbjct: 75 NH-SGEITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQA 133
Query: 185 LMDKYDNRSGSRKLGLSFDSFVE 207
LM K+D + R+ L FD +VE
Sbjct: 134 LMRKFDRQ---RRGSLGFDDYVE 153
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 83 FEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLF-RNPHDSLRIGPKEFADLW 140
F D G +D NE++ AL SSGYQ S T + LM F R SL G ++ +L
Sbjct: 99 FRKRDSSGDGRLDSNEVRAALLSSGYQ-VSEQTFQALMRKFDRQRRGSL--GFDDYVELS 155
Query: 141 SCLGQWRAIFERYDRDRSGKI 161
+ + R +F YDR+R+G++
Sbjct: 156 IFVCRVRNVFAFYDRERTGQV 176
>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
Length = 198
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALS-----SGYQRFSLSTIRLLMFLFRNPHD 127
PG D + + + G ID +ELQ+ L+ GY+ F+L T RL++ +
Sbjct: 28 PGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM- 86
Query: 128 SLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMD 187
S +G EF +LW+ L WR F D DRSG +D EL+ AL ++G+ + P + +
Sbjct: 87 SGTMGFNEFKELWAVLNGWRQHFISLDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 146
Query: 188 KYDNRSGSRKLGLSFDSFV 206
+Y S ++FD ++
Sbjct: 147 RY-----STNGKITFDDYI 160
>pdb|1GJY|A Chain A, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|B Chain B, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|C Chain C, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|D Chain D, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
Length = 167
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 11/122 (9%)
Query: 90 RSGFIDENELQQALS-----SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144
+ G ID +ELQ+ L+ GY+ F+L T RL++ + S +G EF +LW+ L
Sbjct: 14 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM-SGTMGFNEFKELWAVLN 72
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDS 204
WR F +D DRSG +D EL+ AL ++G+ + P + + +Y + SG ++FD
Sbjct: 73 GWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY-STSGK----ITFDD 127
Query: 205 FV 206
++
Sbjct: 128 YI 129
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 87 DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQW 146
D DRSG +D ELQ+AL++ R + T+ + + G F D +C +
Sbjct: 82 DSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTS------GKITFDDYIACCVKL 135
Query: 147 RAI---FERYDRDRSGKIDL 163
RA+ F R D + G ++
Sbjct: 136 RALTDSFRRRDSAQQGMVNF 155
>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 90 RSGFIDENELQQALSSG-----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144
+ G +D ELQ+ L+ Y FSL T R+++ + H ++G F +LW+ L
Sbjct: 12 QDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTG-KMGFNAFKELWAALN 70
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDS 204
W+ F D+D SG ++ ELR A+ +GY + P L ++ +Y S+ + FD
Sbjct: 71 AWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY-----SKNGRIFFDD 125
Query: 205 FV 206
+V
Sbjct: 126 YV 127
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
+F VD+D SG ++ +EL+QA+ G + LS L + R + G F D +
Sbjct: 75 NFMTVDQDGSGTVEHHELRQAI--GLMGYRLSPQTLTTIVKRYSKN----GRIFFDDYVA 128
Query: 142 CLGQWRAI---FERYDRDRSGKIDLM 164
C + RA+ F++ D + G D +
Sbjct: 129 CCVKLRALTDFFKKRDHLQQGSADFI 154
>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 90 RSGFIDENELQQALSSG-----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144
+ G +D ELQ+ L+ Y FSL T R+++ + H ++G F +LW+ L
Sbjct: 12 QDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTG-KMGFNAFKELWAALN 70
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDS 204
W+ F D+D SG ++ ELR A+ +GY + P L ++ +Y S+ + FD
Sbjct: 71 AWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY-----SKNGRIFFDD 125
Query: 205 FV 206
+V
Sbjct: 126 YV 127
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
+F VD+D SG ++ +EL+QA+ G + LS L + R + G F D +
Sbjct: 75 NFMTVDQDGSGTVEHHELRQAI--GLMGYRLSPQTLTTIVKRYSKN----GRIFFDDYVA 128
Query: 142 CLGQWRAI---FERYDRDRSGKIDLM 164
C + RA+ F + D + G + +
Sbjct: 129 CCVKLRALTDFFRKRDHLQQGSANFI 154
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
F + T R ++ + + + ++G +EF LW+ + +W+ I++R+D DRSG I EL A
Sbjct: 55 FGIDTCRSMVAVM-DSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGA 113
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+ G+ + + +++ +Y + +G+ + FD+F+
Sbjct: 114 FEAAGFHLNQHIYSMIIRRYSDETGN----MDFDNFI 146
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
++ D DRSG I NEL A + F L+ M + R ++ G +F + SC
Sbjct: 94 YKRFDTDRSGTIGSNELPGAFEAA--GFHLNQHIYSMIIRRYSDET---GNMDFDNFISC 148
Query: 143 LGQWRAIFERY---DRDRSGKIDL 163
L + A+F + D++ +G+I +
Sbjct: 149 LVRLDAMFRAFRSLDKNGTGQIQV 172
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
F + T R ++ + + + ++G +EF LW+ + +W+ I++R+D DRSG I EL A
Sbjct: 51 FGIDTCRSMVAVM-DSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGA 109
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+ G+ + + +++ +Y + +G+ + FD+F+
Sbjct: 110 FEAAGFHLNQHIYSMIIRRYSDETGN----MDFDNFI 142
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
F + T R ++ + + + ++G +EF LW+ + +W+ I++R+D DRSG I EL A
Sbjct: 44 FGIDTCRSMVAVM-DSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGA 102
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+ G+ + + +++ +Y + +G+ + FD+F+
Sbjct: 103 FEAAGFHLNQHIYSMIIRRYSDETGN----MDFDNFI 135
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
++ D DRSG I NEL A + F L+ M + R ++ G +F + SC
Sbjct: 83 YKRFDTDRSGTIGSNELPGAFEAA--GFHLNQHIYSMIIRRYSDET---GNMDFDNFISC 137
Query: 143 LGQWRAIFERY---DRDRSGKIDL 163
L + A+F + D++ +G+I +
Sbjct: 138 LVRLDAMFRAFRSLDKNGTGQIQV 161
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 130 RIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189
++G +EF LW+ + +W+ I++R+D DRSG I EL A + G+ + + +++ +Y
Sbjct: 74 KLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRY 133
Query: 190 DNRSGSRKLGLSFDSFV 206
+ +G+ + FD+F+
Sbjct: 134 SDETGN----MDFDNFI 146
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
++ D DRSG I NEL A + F L+ M + R ++ G +F + SC
Sbjct: 94 YKRFDTDRSGTIGSNELPGAFEAA--GFHLNQHIYSMIIRRYSDET---GNMDFDNFISC 148
Query: 143 LGQWRAIFERY---DRDRSGKIDL 163
L + A+F + D++ +G+I +
Sbjct: 149 LVRLDAMFRAFRSLDKNGTGQIQV 172
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
F + T R ++ + + + ++G +EF LW+ + +W+AI++++D DRSG I EL A
Sbjct: 55 FGIDTCRSMVAVM-DSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGA 113
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+ G+ + + +++ +Y + SG+ + FD+F+
Sbjct: 114 FEAAGFHLNEHLYNMIIRRYSDESGN----MDFDNFI 146
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
FS+ T ++++ + + S ++G KEF LW+ + +++ I+ D DRSG ++ E+R A
Sbjct: 571 FSIETCKIMVDML-DSDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKA 629
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
L G+ +P + Q+++ ++ +L + FD+FV
Sbjct: 630 LEEAGFKMPCQLHQVIVARF----ADDQLIIDFDNFV 662
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
FS+ T ++++ + + S ++G KEF LW+ + +++ I+ D DRSG ++ E+R A
Sbjct: 572 FSIETCKIMVDML-DEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKA 630
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
L G+ +P + Q+++ ++ +L + FD+FV
Sbjct: 631 LEEAGFKLPCQLHQVIVARF----ADDELIIDFDNFV 663
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
FS+ T ++++ + + S ++G KEF LW+ + +++ I+ D DRSG ++ E+R A
Sbjct: 572 FSIETCKIMVDML-DEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKA 630
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
L G+ +P + Q+++ ++ +L + FD+FV
Sbjct: 631 LEEAGFKLPCQLHQVIVARF----ADDELIIDFDNFV 663
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
FS+ T ++++ + + S ++G KEF LW+ + +++ I+ D DRSG ++ E+R A
Sbjct: 572 FSIETCKIMVDML-DEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKA 630
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
L G+ +P + Q+++ ++ +L + FD+FV
Sbjct: 631 LEEAGFKLPCQLHQVIVARF----ADDELIIDFDNFV 663
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
F + T R ++ + + + ++G +EF LW+ + +W+ I++R++ DRSG I EL A
Sbjct: 771 FGIDTCRSMVAVM-DSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGA 829
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+ G+ + + +++ +Y + +G+ + FD+F+
Sbjct: 830 FEAAGFHLNQHIYSMIIRRYSDETGN----MDFDNFI 862
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
FSL + R ++ L + ++G EF LW+ + + IF ++D D+SG + E+R A
Sbjct: 574 FSLESCRSMVNLMDRDGNG-KLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMA 632
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+ + G+ +P + Q+++ ++ +L + FD+FV
Sbjct: 633 IEAAGFKLPCQLHQVIVARF----ADDELIIDFDNFV 665
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169
F + T R ++ + + + ++G +EF LW+ + +W+AI++++D DRSG I EL A
Sbjct: 44 FGIDTCRSMVAVM-DSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGA 102
Query: 170 LYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
+ G+ + + +++ +Y + G+ + FD+F+
Sbjct: 103 FEAAGFHLNEHLYSMIIRRYSDEGGN----MDFDNFI 135
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDS 128
+ P + + + F VDRDRSG ++ NEL G R S T +M +F +
Sbjct: 43 NTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNG 102
Query: 129 LRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAV 177
I EF ++ + +F DR+RSG ++ E+ AL +G+ +
Sbjct: 103 -HISFYEFMAMYKFMELAYNLFVMNDRNRSGTLEPHEILPALQQLGFYI 150
>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin (Oncomodulin)
Refined With A Paramagnetism Based Strategy
Length = 109
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 63 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ---QALSSGYQRFSLSTIRLLM 119
F G S DV R +D D+SG++DE EL+ Q SG + + S + LM
Sbjct: 31 FQTSGLSKMSANQVKDVFR---FIDNDQSGYLDEEELKFFLQKFESGARELTESETKSLM 87
Query: 120 FLFRNPHDSLRIGPKEFADL 139
N D +IG +EF ++
Sbjct: 88 AAADNDGDG-KIGAEEFQEM 106
>pdb|1S3P|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin S55d/e59d
Mutant
Length = 109
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 61 GQFSA---YGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQQAL---SSGYQ 108
G F+A + H F + DV + F ++D+D+ GFIDE+EL L SS +
Sbjct: 16 GAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKDGFIDEDELGSILKGFSSDAR 75
Query: 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
S + LM D +IG +EF+ L +
Sbjct: 76 DLSAKETKTLMAAGDKDGDG-KIGVEEFSTLVA 107
>pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Without The
N-Terminal Domain
Length = 73
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 75 THPDVIRSFEMVDRDRSGFIDENELQQAL---SSGYQRFSLSTIRLLMFLFRNPHDSLRI 131
+ DV + F ++D+D+SGFI+E+EL L SS + S + LM D +I
Sbjct: 3 SADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDG-KI 61
Query: 132 GPKEFADLWS 141
G +EF+ L +
Sbjct: 62 GVEEFSTLVA 71
>pdb|3SJS|A Chain A, Crystal Structure Of Ure3-Binding Protein From Entamoeba
Histolytica, (D127a,N129a) Mutant, Native Form
pdb|3SIA|A Chain A, Crystal Structure Of Ure3-Binding Protein, (D127a,N129a)
Mutant, Iodide Phased
Length = 220
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDS 128
+ P + + + F VDRDRSG ++ NEL G R S T +M +F +
Sbjct: 43 NTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNG 102
Query: 129 LRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAV 177
I EF ++ + +F R RSG ++ E+ AL +G+ +
Sbjct: 103 -HISFYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYI 150
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 75 THPDVIRSFEMVDRDRSGFIDENELQQALS--SGYQR-FSLSTIRLLMFLFRNPHDSLRI 131
T V FE++D+D+SGFI+E EL+ L S + R + + + L+ + HD +I
Sbjct: 39 TDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDG-KI 97
Query: 132 GPKEFADLWS 141
G EFA + +
Sbjct: 98 GADEFAKMVA 107
>pdb|1RTP|1 Chain 1, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|2 Chain 2, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|3 Chain 3, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RWY|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|B Chain B, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|C Chain C, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|2JWW|A Chain A, Calcium-Free Rat Alpha-Parvalbumin
Length = 109
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 61 GQFSA---YGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQQAL---SSGYQ 108
G F+A + H F + DV + F ++D+D+SGFI+E+EL L SS +
Sbjct: 16 GAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDAR 75
Query: 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
S + LM D +IG +EF+ L +
Sbjct: 76 DLSAKETKTLMAAGDKDGDG-KIGVEEFSTLVA 107
>pdb|1RJV|A Chain A, Solution Structure Of Human Alpha-Parvalbumin Refined With
A Paramagnetism-Based Strategy
pdb|1RK9|A Chain A, Solution Structure Of Human Alpha-Parvalbumin (Minimized
Average Structure)
Length = 110
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 61 GQFSA---YGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ---QALSSGYQ 108
G FSA + H F + DV + F M+D+D+SGFI+E+EL + S +
Sbjct: 17 GAFSATDSFDHKKFFQMVGLKKKSADDVKKVFHMLDKDKSGFIEEDELGFILKGFSPDAR 76
Query: 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
S ++LM D +IG EF+ L +
Sbjct: 77 DLSAKETKMLMAAGDKDGDG-KIGVDEFSTLVA 108
>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 142
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 82 SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
+FE+ D +R+GFI + LQ L R + + N D+ G +F + S
Sbjct: 11 AFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMF----NEADATGNGKIQFPEFLS 66
Query: 142 CLGQ----------WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191
+G+ R F +D + +G I L+DAL ++G + P + +
Sbjct: 67 MMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITET 126
Query: 192 RSGSRKLGLSFDSFV 206
G + +D+F+
Sbjct: 127 EKGQ----IRYDNFI 137
>pdb|3F45|A Chain A, Structure Of The R75a Mutant Of Rat Alpha-Parvalbumin
Length = 109
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 78 DVIRSFEMVDRDRSGFIDENELQQAL---SSGYQRFSLSTIRLLMFLFRNPHDSLRIGPK 134
DV + F ++D+D+SGFI+E+EL L SS S + LM D +IG +
Sbjct: 42 DVKKVFHILDKDKSGFIEEDELGSILKGFSSDAADLSAKETKTLMAAGDKDGDG-KIGVE 100
Query: 135 EFADLWS 141
EF+ L +
Sbjct: 101 EFSTLVA 107
>pdb|2JOJ|A Chain A, Nmr Solution Structure Of N-Terminal Domain Of Euplotes
Octocarinatus Centrin
Length = 77
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAV-PPSVLQLLMDKYDNRSGSRKLGLSFD 203
+ + F+ +D +++G ID EL+ A+ ++G+ V P +L+ LM++YD R G+ +G FD
Sbjct: 8 EIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILE-LMNEYD-REGNGYIG--FD 63
Query: 204 SFVE 207
F++
Sbjct: 64 DFLD 67
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium Regulatory
Domain (Cld) From Soybean Calcium-Dependent Protein
Kinase- Alpha (Cdpk)
Length = 87
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD-NRSGSRKLG 199
+G + +F+ D D SG I EL+D L +G + S ++ LMD D ++SG+ G
Sbjct: 22 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYG 79
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 35.4 bits (80), Expect = 0.021, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD-NRSGSRKLGLS 201
+ ++RA F +DR ++G +D + R L S+GY + + +M D NR G ++
Sbjct: 724 MNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGV----VT 779
Query: 202 FDSFVE 207
F +F++
Sbjct: 780 FQAFID 785
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD-NRSGS 195
+G + +F+ D D SG I EL+D L +G + S ++ LMD D ++SG+
Sbjct: 9 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT 62
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142
F+M+D D SG I +EL+ L S I+ LM + D + G ++ + +
Sbjct: 16 FKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLM----DAADIDKSGTIDYGEFIAA 71
Query: 143 LGQWRAI---------FERYDRDRSGKIDLMELRDALYSIG 174
+ F +D+D SG I L E++ A G
Sbjct: 72 TVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG 112
>pdb|1CDP|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
pdb|4CPV|A Chain A, Refined Crystal Structure Of Calcium-Liganded Carp
Parvalbumin 4.25 At 1.5-Angstroms Resolution
pdb|5CPV|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
Length = 109
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Query: 65 AYGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
++ H AF + DV ++F ++D+D+SGFI+E+EL+
Sbjct: 24 SFNHKAFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELK 65
>pdb|1B8R|A Chain A, Parvalbumin
Length = 108
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Query: 65 AYGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
++ H AF + DV ++F ++D+D+SGFI+E+EL+
Sbjct: 23 SFNHKAFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELK 64
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207
IF+R+D + GKI EL DAL ++G P V +++ + + G +SFD F +
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGF----ISFDEFTD 70
>pdb|1BU3|A Chain A, Refined Crystal Structure Of Calcium-Bound Silver Hake (Pi
4.2) Parvalbumin At 1.65 A
Length = 109
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 66 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ---QALSSGYQRFSLSTIRLLMFLF 122
+ + D+ ++F ++D+D+SGFI+E+EL+ Q S+G + + + + +
Sbjct: 31 FAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90
Query: 123 RNPHDSLRIGPKEFADL 139
+ D IG E+A L
Sbjct: 91 DSDGDG-AIGVDEWAAL 106
>pdb|1XVJ|A Chain A, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
pdb|1XVJ|B Chain B, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
Length = 109
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 61 GQFSA---YGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQQAL---SSGYQ 108
G F+A + H F + DV + F ++D+D+SGFI+E+EL L SS +
Sbjct: 16 GAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDAR 75
Query: 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141
S + LM + S +I +EF+ L +
Sbjct: 76 DLSAKETKTLM-AAGDKDGSGKIEVEEFSTLVA 107
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 83 FEMVDRDRSGFIDENELQ---QALSSGYQRFSLSTIRLLMFLFRNPHDS-LRIGPKEFAD 138
F ++D D+SGFI+E+EL+ Q SG + + S + FL HD +IG +EF +
Sbjct: 47 FRILDNDQSGFIEEDELKYFLQRFESGARVLTASETK--TFLAAADHDGDGKIGAEEFQE 104
Query: 139 L 139
+
Sbjct: 105 M 105
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLL 185
IF+R+D + GKI L EL DAL ++G V +++
Sbjct: 7 IFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMM 43
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDS 128
+ P ++ +F D+D+ G+I+ +L + + GY + I L + N
Sbjct: 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH 63
Query: 129 LR-------IGPKEFADLWSCLG--QWRAIFERYDRDRSGKIDLMELRDALYS-IGYAVP 178
+ +GPK A+ +G + R F +D + G+I ELR+A+ + +G+ V
Sbjct: 64 VDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVG 123
Query: 179 PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
++ ++ D R + F+ FV
Sbjct: 124 HRDIEEIIRDVDLNGDGR---VDFEEFV 148
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDS 204
+ R F +D+D+ G I+ +L + + ++GY L L + + G + FD
Sbjct: 12 ELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH---VDFDD 68
Query: 205 FVE 207
FVE
Sbjct: 69 FVE 71
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLL 185
IF+R+D + GKI L EL DAL ++G V +++
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMM 44
>pdb|2PVB|A Chain A, Pike Parvalbumin (Pi 4.10) At Low Temperature (100k) And
Atomic Resolution (0.91 A).
pdb|3PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|1PVB|A Chain A, X-Ray Structure Of A New Crystal Form Of Pike 4.10
Parvalbumin
pdb|2PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|1PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
pdb|4PAL|A Chain A, Ionic Interactions With Parvalbumins. Crystal Structure
Determination Of Pike 4.10 Parvalbumin In Four Different
Ionic Environments
Length = 108
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS-----LSTIRLLMFLFRNPHDS-LRI 131
DV ++F ++D+D+SGFI+E+EL+ L Q FS L+ FL D I
Sbjct: 42 DVKKAFYVIDQDKSGFIEEDELKLFL----QNFSPSARALTDAETKAFLADGDKDGDGMI 97
Query: 132 GPKEFA 137
G EFA
Sbjct: 98 GVDEFA 103
>pdb|3FS7|A Chain A, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|B Chain B, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|C Chain C, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|D Chain D, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|E Chain E, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|F Chain F, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|G Chain G, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
pdb|3FS7|H Chain H, Crystal Structure Of Gallus Gallus Beta-Parvalbumin (Avian
Thymic Hormone)
Length = 109
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 63 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS--SGYQRFSLSTIRLLMF 120
FS G S+ P + + F ++D+D+SGFI+E ELQ L S R L++ F
Sbjct: 31 FSTVGLSSKTP---DQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARV-LTSAETKAF 86
Query: 121 LFRNPHDS-LRIGPKEFADL 139
L D +IG +EF L
Sbjct: 87 LAAGDTDGDGKIGVEEFQSL 106
>pdb|2KQY|A Chain A, Solution Structure Of Avian Thymic Hormone
Length = 108
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 63 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS-----LSTIRL 117
FS G S+ P + + F ++D+D+SGFI+E ELQ L + FS L++
Sbjct: 30 FSTVGLSSKTP---DQIKKVFGILDQDKSGFIEEEELQLFL----KNFSSSARVLTSAET 82
Query: 118 LMFLFRNPHDS-LRIGPKEFADL 139
FL D +IG +EF L
Sbjct: 83 KAFLAAGDTDGDGKIGVEEFQSL 105
>pdb|3J04|B Chain B, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|E Chain E, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 143
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Query: 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140
+F M+D++R GFID+ +L L+S + + + +M S GP F
Sbjct: 11 EAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMM--------SEAPGPINFTMFL 62
Query: 141 SCLGQ----------WRAIFERYDRDRSGKIDLMELRDALYSIG 174
+ G+ R F +D + SG I LR+ L ++G
Sbjct: 63 TMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMG 106
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 74 GTHP-DVIR-SFEMVDRDRSGFIDENELQQALSSGYQRFS 111
GT P DVIR +F D + SGFI E+ L++ L++ RF+
Sbjct: 71 GTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFT 110
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 32/135 (23%)
Query: 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRI 131
P D I E VD D SG ID ++ F L+M + + D+
Sbjct: 53 PTKEELDAI--IEEVDEDGSGTID-----------FEEF------LVMMVRQMKEDAKGK 93
Query: 132 GPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191
+E AD C F +D++ G ID+ EL + L + G V ++ LM D
Sbjct: 94 SEEELAD---C-------FRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 143
Query: 192 RSGSRKLGLSFDSFV 206
+ R + FD F+
Sbjct: 144 NNDGR---IDFDEFL 155
>pdb|2EC6|B Chain B, Placopecten Striated Muscle Myosin Ii
Length = 133
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 32/111 (28%)
Query: 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRI-------GP 133
+F M+D++R GFID N+L++ SS L R P D GP
Sbjct: 6 EAFTMIDQNRDGFIDINDLKEEFSS---------------LGRTPDDKELTAMLKEAPGP 50
Query: 134 KEFADLWSCLGQ----------WRAIFERYDRDRSGKIDLMELRDALYSIG 174
F S R F +D D + K+++ ++D L ++G
Sbjct: 51 LNFTMFLSIFSDKLSGTDSEETIRNAFGMFDEDATKKLNIEYIKDLLENMG 101
>pdb|1A75|B Chain B, Whiting Parvalbumin
Length = 109
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 66 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
+ + D+ ++F +D+D+SGFI+E+EL+
Sbjct: 31 FAKCGLSGKSADDIKKAFVFIDQDKSGFIEEDELK 65
>pdb|1A75|A Chain A, Whiting Parvalbumin
Length = 108
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 66 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
+ + D+ ++F +D+D+SGFI+E+EL+
Sbjct: 30 FAKCGLSGKSADDIKKAFVFIDQDKSGFIEEDELK 64
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDS 128
+ P ++ +F D+D+ G+I+ +L + + GY + I L + N
Sbjct: 18 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH 77
Query: 129 LR-------IGPKEFADLWSCLG--QWRAIFERYDRDRSGKIDLMELRDALYS-IGYAVP 178
+ +GPK A+ +G + R F +D + G+I ELR+A+ +G+ V
Sbjct: 78 VDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVG 137
Query: 179 PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
++ ++ D R + F+ FV
Sbjct: 138 HRDIEEIIRDVDLNGDGR---VDFEEFV 162
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDS 204
+ R F +D+D+ G I+ +L + + ++GY L L + + G + FD
Sbjct: 26 ELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH---VDFDD 82
Query: 205 FVE 207
FVE
Sbjct: 83 FVE 85
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDS 128
+ P ++ +F D+D+ G+I+ +L + + GY + I L + N
Sbjct: 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH 63
Query: 129 LR-------IGPKEFADLWSCLG--QWRAIFERYDRDRSGKIDLMELRDALYS-IGYAVP 178
+ +GPK A+ +G + R F +D + G+I ELR+A+ +G+ V
Sbjct: 64 VDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVG 123
Query: 179 PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
++ ++ D R + F+ FV
Sbjct: 124 HRDIEEIIRDVDLNGDGR---VDFEEFV 148
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDS 204
+ R F +D+D+ G I+ +L + + ++GY L L + + G + FD
Sbjct: 12 ELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH---VDFDD 68
Query: 205 FVE 207
FVE
Sbjct: 69 FVE 71
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMD 187
IF+R+D + GKI EL +AL ++G P V ++ +
Sbjct: 14 IFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAE 52
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140
+F + D+D G I EL + S Q + + ++ ++ N D+ G +F +
Sbjct: 315 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI----NEVDADGNGTIDFPEFL 370
Query: 141 SCLGQW----------RAIFERYDRDRSGKIDLMELRDALYSIG 174
+ + +W R F +D+D +G I ELR + ++G
Sbjct: 371 TMMARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLG 414
>pdb|1B9A|A Chain A, Parvalbumin (Mutation;d51a, F102w)
Length = 108
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 65 AYGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
++ H AF + DV ++F ++ +D+SGFI+E+EL+
Sbjct: 23 SFNHKAFFAKVGLTSKSADDVKKAFAIIAQDKSGFIEEDELK 64
>pdb|1B8C|A Chain A, Parvalbumin
pdb|1B8C|B Chain B, Parvalbumin
pdb|1B8L|A Chain A, Calcium-Bound D51aE101DF102W TRIPLE MUTANT OF BETA CARP
Parvalbumin
Length = 108
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 65 AYGHSAF------PPGTHPDVIRSFEMVDRDRSGFIDENELQ 100
++ H AF + DV ++F ++ +D+SGFI+E+EL+
Sbjct: 23 SFNHKAFFAKVGLTSKSADDVKKAFAIIAQDKSGFIEEDELK 64
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 86 VDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145
VD D SG +D + F + +R + DS +E +DL
Sbjct: 64 VDEDGSGTVD-----------FDEFLVMMVRCM------KDDSKGKTEEELSDL------ 100
Query: 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205
F +D++ G IDL EL+ L + G + ++ LM D + R + +D F
Sbjct: 101 ----FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEF 153
Query: 206 VE 207
+E
Sbjct: 154 LE 155
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 86 VDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145
VD D SG +D +E L+M + DS +E +DL
Sbjct: 64 VDEDGSGTVDFDEF-----------------LVMMVRSMKDDSKGKTEEELSDL------ 100
Query: 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205
F +D++ G IDL EL+ L + G + ++ LM D + R + +D F
Sbjct: 101 ----FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEF 153
Query: 206 VE 207
+E
Sbjct: 154 LE 155
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 86 VDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145
VD D SG +D +E L+M + DS +E +DL
Sbjct: 64 VDEDGSGTVDFDEF-----------------LVMMVRSMKDDSKGKSEEELSDL------ 100
Query: 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205
F +D++ G IDL EL+ L + G + ++ LM D + R + +D F
Sbjct: 101 ----FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEF 153
Query: 206 VE 207
+E
Sbjct: 154 LE 155
>pdb|2OS8|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS 105
+ P ++ +F M+D++R GFID N+L++ SS
Sbjct: 11 TKLPQKQIQEMKEAFTMIDQNRDGFIDINDLKEMFSS 47
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 32/135 (23%)
Query: 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRI 131
P D I E VD D SG ID ++ F L+M + + D+
Sbjct: 53 PTKEELDAI--IEEVDEDGSGTID-----------FEEF------LVMMVRQMKEDAKGK 93
Query: 132 GPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191
+E A +C F +D++ G ID+ EL + L + G V ++ LM D
Sbjct: 94 SEEELA---NC-------FRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 143
Query: 192 RSGSRKLGLSFDSFV 206
+ R + FD F+
Sbjct: 144 NNDGR---IDFDEFL 155
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 32/135 (23%)
Query: 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRI 131
P D I E VD D SG ID ++ F L+M + + D+
Sbjct: 50 PTKEELDAI--IEEVDEDGSGTID-----------FEEF------LVMMVRQMKEDAKGK 90
Query: 132 GPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191
+E A +C F +D++ G ID+ EL + L + G V ++ LM D
Sbjct: 91 SEEELA---NC-------FRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 140
Query: 192 RSGSRKLGLSFDSFV 206
+ R + FD F+
Sbjct: 141 NNDGR---IDFDEFL 152
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 63 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQ---QALSSGYQRFSLSTIRLLM 119
F G S D+ R +D D+SG++D +EL+ Q S + + S + LM
Sbjct: 30 FQTSGLSKMSASQVKDIFR---FIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLM 86
Query: 120 FLFRNPHDSLRIGPKEFADL 139
N D +IG EF ++
Sbjct: 87 DAADNDGDG-KIGADEFQEM 105
>pdb|3PN7|B Chain B, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|E Chain E, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|B Chain B, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|E Chain E, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
Length = 161
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS 105
P ++ +F M+D++R GFID N+L++ SS
Sbjct: 17 LPQKLMQEMKEAFTMIDQNRDGFIDINDLKEMFSS 51
>pdb|3TUY|B Chain B, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|E Chain E, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 161
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS 105
P ++ +F M+D++R GFID N+L++ SS
Sbjct: 17 LPQKLMQEMKEAFTMIDQNRDGFIDINDLKEMFSS 51
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 86 VDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145
VD D SG +D +E L+M + DS +E +DL
Sbjct: 64 VDEDGSGTVDFDEF-----------------LVMMVRSMKDDSKGKSEEELSDL------ 100
Query: 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205
F +D++ G IDL EL+ L + G + ++ LM D + R + +D F
Sbjct: 101 ----FRMWDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEF 153
Query: 206 VE 207
+E
Sbjct: 154 LE 155
>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|F Chain F, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|C Chain C, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|F Chain F, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|C Chain C, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|F Chain F, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 156
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT+ D + +F+ DR+ GFI EL+ LS +R S + ++ L
Sbjct: 81 GTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINL 128
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 32/135 (23%)
Query: 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRI 131
P D I E VD D SG ID ++ F L+M + + D+
Sbjct: 53 PTKEELDAI--IEEVDEDGSGTID-----------FEEF------LVMMVRQMKEDAKGK 93
Query: 132 GPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191
+E D C F +D++ G ID+ EL + L + G V ++ LM D
Sbjct: 94 SEEELED---C-------FRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 143
Query: 192 RSGSRKLGLSFDSFV 206
+ R + FD F+
Sbjct: 144 NNDGR---IDFDEFL 155
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207
+F +D++ G IDL EL+ L + G + ++ LM D + R + +D F+E
Sbjct: 12 LFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEFLE 67
>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT+ D + +F+ DR+ GFI EL+ LS +R S + ++ L
Sbjct: 82 GTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINL 129
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 78 DVIRSFEMVDRDRSGFIDENELQQALSS 105
DV + F+ +D D SGFI+E EL+ L S
Sbjct: 43 DVKKVFKAIDADASGFIEEEELKFVLKS 70
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207
+F +D++ G IDL EL+ L + G + ++ LM D + R + +D F+E
Sbjct: 10 LFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEFLE 65
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 22/115 (19%)
Query: 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLST--------IRLLMFLFRNPHDS 128
+ ++++ D D SGFI+ EL+ L ++ + + L++ LF + +D
Sbjct: 103 EEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDG 162
Query: 129 -------LRIGPKE------FADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 170
R+ P + F + C ++ FE YD+D +G ID EL DAL
Sbjct: 163 KLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENEL-DAL 216
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 81 RSFEMVDRDRSGFIDENELQQALS 104
++FE+ D+D +G+IDENEL L
Sbjct: 195 KAFELYDQDGNGYIDENELDALLK 218
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207
+F +D++ G IDL EL+ L + G + ++ LM D + R + +D F+E
Sbjct: 20 LFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEFLE 75
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207
+F +D++ G IDL EL+ L + G + ++ LM D + R + +D F+E
Sbjct: 15 LFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEFLE 70
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 19/125 (15%)
Query: 83 FEMVDRDRSGFIDENELQQ--ALS--------------SGYQRFSLSTIRLLMFLFR--N 124
F +DR++ G++ +LQQ AL+ G QR ++ FR
Sbjct: 35 FRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVE 94
Query: 125 PHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL-YSIGYAVPPSVLQ 183
D+ PK+ L S + F+ YD DR GKI E+ L +G V L+
Sbjct: 95 DEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLE 154
Query: 184 LLMDK 188
+ D+
Sbjct: 155 NIADR 159
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 128 SLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMD 187
SL+ GP L + F +D + G +D EL+ A+ ++G+ +P + L+D
Sbjct: 7 SLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLID 66
Query: 188 KYDNRSGSRKLGLSFDSF 205
+YD S R L + +D F
Sbjct: 67 EYD--SEGRHL-MKYDDF 81
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKL 198
+ R F+ +D D +G ID+ EL+ A+ ++G+ ++ ++ + D + G+ K+
Sbjct: 32 EIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEID-KEGTGKM 84
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 32/135 (23%)
Query: 72 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRI 131
P D I E VD D SG ID ++ F L+M + + D+
Sbjct: 53 PTKEELDAI--IEEVDEDGSGTID-----------FEEF------LVMMVRQMKEDAKGK 93
Query: 132 GPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191
+E A +C F +D++ G ID+ EL + L + G V ++ LM D
Sbjct: 94 SEEELA---NC-------FRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDK 143
Query: 192 RSGSRKLGLSFDSFV 206
+ R + FD F+
Sbjct: 144 NNDGR---IDFDEFL 155
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207
+F +D++ G IDL EL+ L + G + ++ LM D + R + +D F+E
Sbjct: 11 LFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEFLE 66
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKL 198
+ R F+ +D D +G ID+ EL+ A+ ++G+ ++ ++ + D + G+ K+
Sbjct: 7 EIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEID-KEGTGKM 59
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSF 202
L + R F+ +DRD +G I EL A+ S+GY L++++ + D + + F
Sbjct: 35 LEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQ---VDF 91
Query: 203 DSFV 206
+ FV
Sbjct: 92 EEFV 95
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190
+ +++ F +D+D SG I EL + S+G + + + LM++ D
Sbjct: 10 IAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEID 57
>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii
Length = 156
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ LS +R S + ++ L
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLSGLGERLSDEEVDEIINL 128
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor
Domain Of Centrin
Length = 96
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191
+ R F+ +D D SG ID EL+ A+ ++G+ ++ ++ + D
Sbjct: 31 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDK 77
>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 145
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIG 174
Q + F+ +D+D GK+ + EL AL S+G
Sbjct: 6 QIQECFQIFDKDNDGKVSIEELGSALRSLG 35
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 30/122 (24%)
Query: 86 VDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145
VD D SG +D +E L+M + DS +E +DL
Sbjct: 64 VDEDGSGTVDFDEF-----------------LVMMVRSMKDDSKGKSEEELSDL------ 100
Query: 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205
F D++ G IDL EL+ L + G + ++ LM D + R + +D F
Sbjct: 101 ----FRMXDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEF 153
Query: 206 VE 207
+E
Sbjct: 154 LE 155
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 128 SLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMD 187
SL+ GP L + F +D + G +D EL+ A ++G+ +P + L+D
Sbjct: 7 SLQSGPLNSELLEEQKQEIYEAFSLFDXNNDGFLDYHELKVAXKALGFELPKREILDLID 66
Query: 188 KYDNR 192
+YD+
Sbjct: 67 EYDSE 71
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 81 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 128
>pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd)
From Burkholderia Thailandensis E264
Length = 368
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 102 ALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD---LW----SCLG------QWR 147
AL+ G YQRFSL IR ++ + HD R+ F LW + G W
Sbjct: 223 ALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGGGLWLEDLAATGVDAVGLDWT 282
Query: 148 AIFERYDRDRSGKIDLMELRDALYSIGYAVPPSV---LQLLMDKYDNRSG 194
R +G++ L D +I +A P ++ + ++D Y N G
Sbjct: 283 VNLGRARERVAGRVALQGNLDP--TILFAPPEAIRAEARAVLDSYGNHPG 330
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS 111
GT D + +F+ DR+ GFI EL+ L++ +R S
Sbjct: 79 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLS 116
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 78 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 125
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 86 VDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145
VD D SG +D +E L+M + DS +E +DL
Sbjct: 64 VDEDGSGTVDFDEF-----------------LVMMVRSMKDDSKGKSEEELSDL------ 100
Query: 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205
F +D++ G IDL EL+ L + G + ++ LM D + R + +D +
Sbjct: 101 ----FRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR---IDYDEW 153
Query: 206 VE 207
+E
Sbjct: 154 LE 155
>pdb|1F54|A Chain A, Solution Structure Of The Apo N-Terminal Domain Of Yeast
Calmodulin
pdb|1F55|A Chain A, Solution Structure Of The Calcium Bound N-Terminal Domain
Of Yeast Calmodulin
Length = 77
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190
+ +++ F +D+D +G I EL + S+G + + + LM++ D
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEID 56
>pdb|2K7B|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 N-Domain
Length = 76
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDS 204
+ R F +D+D+ G I+ +L + + ++GY L L + + G + FD
Sbjct: 11 ELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH---VDFDD 67
Query: 205 FVE 207
FVE
Sbjct: 68 FVE 70
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121
GT D + +F+ DR+ GFI EL+ L++ +R S + ++ L
Sbjct: 78 GTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKL 125
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYA-VPPSVLQLLMDKYDNRSGSRKLGLSFD 203
+ R F+ +D D SG ID EL+ A+ ++G+ + +++ D + SG+ + F+
Sbjct: 9 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGT----IDFE 64
Query: 204 SFVE 207
F++
Sbjct: 65 EFLQ 68
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGS 195
+ R F+ +D D SG ID EL+ A+ ++G+ ++ ++ + D + GS
Sbjct: 29 EIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEID-KDGS 78
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190
+ +++ F +D+D +G I EL + S+G + + + LM++ D
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEID 56
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190
+ +++ F +D+D +G I EL + S+G + + + LM++ D
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEID 56
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190
+ +++ F +D+D +G I EL + S+G + + + LM++ D
Sbjct: 10 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEID 57
>pdb|3GYC|A Chain A, Crystal Structure Of Putative Glycoside Hydrolase
(Yp_001304622.1) From Parabacteroides Distasonis Atcc
8503 At 1.85 A Resolution
pdb|3GYC|B Chain B, Crystal Structure Of Putative Glycoside Hydrolase
(Yp_001304622.1) From Parabacteroides Distasonis Atcc
8503 At 1.85 A Resolution
Length = 393
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 62 QFSAYGHSAFPPGTHPDVIRSFEMVDRDRSGF-----IDENELQQALSSGYQRFSLST 114
+ YG++ F P + +V+++ E V R+R G+ D+ EL +++ +R ++T
Sbjct: 247 KLVGYGYNRFLPDDYKNVVKNAERVYRERPGYWQKLLTDKIELXASVARKNRRPLVTT 304
>pdb|1GGW|A Chain A, Cdc4p From Schizosaccharomyces Pombe
Length = 140
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS 111
PG + ++ F++ D+D +G I EL+ L+S ++ S
Sbjct: 72 PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLS 110
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 147 RAIFERYDRDRSGKIDLMELRDALYSI 173
+ F+ YD+DR+G ID EL D + SI
Sbjct: 98 KWTFKIYDKDRNGCIDRQELLDIVESI 124
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double
Mutant Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190
+ +++ F YD+D G I EL + S+G + LQ ++++ D
Sbjct: 9 IAEFKEAFSLYDKDGDGTITTKELGTVMRSLGLNPTEAELQDMINEVD 56
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 27/111 (24%)
Query: 86 VDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQ 145
VD D SG +D +E L+M + DS +E +DL
Sbjct: 64 VDEDGSGTVDFDEF-----------------LVMMVRSMKDDSKGKSEEELSDL------ 100
Query: 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSR 196
F +D++ G IDL EL+ L + G + ++ LM D + R
Sbjct: 101 ----FRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR 147
>pdb|3I5G|B Chain B, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|B Chain B, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|B Chain B, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|B Chain B, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 153
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 74 GTHP-DVIR-SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIR 116
GT P D +R +F M D D GFI E+ L+ L + FS I+
Sbjct: 80 GTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIK 124
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 25/113 (22%)
Query: 74 GTHPDVIR-SFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIG 132
GT + +R +F++ D D G+I NE+ + + YQ +T+ L P +
Sbjct: 95 GTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVG-NTVEL-------PEEENT-- 144
Query: 133 PKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLL 185
P++ D IF D++ GK+ L E ++ G PS++Q L
Sbjct: 145 PEKRVD---------RIFAMMDKNADGKLTLQEFQE-----GSKADPSIVQAL 183
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190
+ +A F D + G I ++LR L G +PP+ LL+D+ D
Sbjct: 56 KLKAAFLHLDEEGKGNITKLQLRKGLERSGLMLPPN-FDLLLDQID 100
>pdb|1IJ5|A Chain A, Metal-Free Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
pdb|1IJ6|A Chain A, Ca2+-Bound Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
Length = 323
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 79 VIRSFEMVDRDRSGFIDENELQQA-LSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFA 137
++ F +D + +G + E ++ + G+ + +++ +F + + +S +G E+
Sbjct: 190 LVADFRKIDTNSNGTLSRKEFREHFVRLGFDK---KSVQDALFRYADEDESDDVGFSEYV 246
Query: 138 DLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 170
L CL R ++ D D+SG++ E++ L
Sbjct: 247 HLGLCLLVLRILYAFADFDKSGQLSKEEVQKVL 279
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 150 FERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206
F +D++ G ID+ EL + L + G V ++ LM D + R + FD F+
Sbjct: 16 FRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGR---IDFDEFL 69
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 150 FERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207
F+ +D+D SGKI EL ++ L+ ++++ DN + F+ FVE
Sbjct: 423 FKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGE---VDFNEFVE 477
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 141 SCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190
+ L + F +D+D G I + ELR A+ +G +P L ++ + D
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREAD 52
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGY 175
+ R F+ +D D +G ID+ EL+ A ++G+
Sbjct: 32 EIREAFDLFDADGTGTIDVKELKVAXRALGF 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,736,794
Number of Sequences: 62578
Number of extensions: 167827
Number of successful extensions: 813
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 200
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)