Query 028539
Match_columns 207
No_of_seqs 229 out of 1294
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 13:05:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0037 Ca2+-binding protein, 100.0 9E-28 2E-32 182.2 19.4 129 75-207 55-184 (221)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 1.2E-26 2.5E-31 171.1 13.8 135 68-207 11-152 (160)
3 KOG0027 Calmodulin and related 99.9 4.6E-25 1E-29 164.2 14.3 133 71-207 2-145 (151)
4 KOG0030 Myosin essential light 99.9 1.9E-23 4.2E-28 147.7 11.3 133 70-207 4-147 (152)
5 PTZ00183 centrin; Provisional 99.9 4.1E-22 8.8E-27 148.8 14.8 135 69-207 9-150 (158)
6 KOG0028 Ca2+-binding protein ( 99.9 5.8E-22 1.3E-26 143.5 13.8 133 70-206 26-165 (172)
7 PTZ00184 calmodulin; Provision 99.9 1.4E-21 3.1E-26 144.2 14.6 133 70-206 4-143 (149)
8 KOG0031 Myosin regulatory ligh 99.9 2E-21 4.4E-26 139.7 12.2 132 67-206 22-160 (171)
9 KOG0037 Ca2+-binding protein, 99.7 8.9E-17 1.9E-21 122.5 12.7 91 78-169 125-217 (221)
10 KOG0034 Ca2+/calmodulin-depend 99.7 1.8E-16 3.8E-21 120.8 12.5 130 70-207 26-171 (187)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.7 4.5E-16 9.7E-21 118.7 13.3 132 72-207 21-171 (193)
12 KOG0036 Predicted mitochondria 99.7 4.7E-16 1E-20 128.1 14.0 132 71-206 8-141 (463)
13 PLN02964 phosphatidylserine de 99.5 1.6E-13 3.5E-18 121.6 12.3 114 69-187 135-272 (644)
14 KOG4223 Reticulocalbin, calume 99.3 4.5E-12 9.8E-17 102.0 8.8 133 70-206 69-223 (325)
15 KOG4223 Reticulocalbin, calume 99.3 5.3E-12 1.1E-16 101.7 8.4 127 76-206 162-300 (325)
16 cd05022 S-100A13 S-100A13: S-1 99.3 7.7E-12 1.7E-16 84.4 7.8 67 76-143 7-76 (89)
17 PF13499 EF-hand_7: EF-hand do 99.3 1.5E-11 3.3E-16 78.4 7.3 62 78-140 1-66 (66)
18 smart00027 EH Eps15 homology d 99.3 1.6E-11 3.4E-16 84.4 7.5 75 71-148 4-78 (96)
19 cd05022 S-100A13 S-100A13: S-1 99.3 1.1E-11 2.4E-16 83.6 6.3 62 142-206 6-70 (89)
20 cd05027 S-100B S-100B: S-100B 99.3 4.6E-11 9.9E-16 80.6 8.6 67 76-143 7-80 (88)
21 KOG0377 Protein serine/threoni 99.2 1.2E-10 2.6E-15 97.3 11.3 124 78-207 465-611 (631)
22 PF13499 EF-hand_7: EF-hand do 99.2 2.5E-11 5.4E-16 77.4 5.7 60 145-207 1-64 (66)
23 KOG0044 Ca2+ sensor (EF-Hand s 99.2 9.6E-11 2.1E-15 89.6 9.4 96 76-172 63-175 (193)
24 PTZ00183 centrin; Provisional 99.2 3.1E-10 6.8E-15 84.3 12.0 96 76-172 52-154 (158)
25 KOG0027 Calmodulin and related 99.2 2.1E-10 4.6E-15 85.2 10.9 96 75-171 42-148 (151)
26 cd05027 S-100B S-100B: S-100B 99.2 7.6E-11 1.7E-15 79.5 7.3 63 142-207 6-75 (88)
27 COG5126 FRQ1 Ca2+-binding prot 99.2 8.3E-11 1.8E-15 87.1 7.8 95 76-172 55-156 (160)
28 cd05025 S-100A1 S-100A1: S-100 99.2 4.7E-10 1E-14 76.4 9.7 68 76-144 8-82 (92)
29 PTZ00184 calmodulin; Provision 99.1 9.7E-10 2.1E-14 80.6 11.2 95 76-171 46-147 (149)
30 cd05031 S-100A10_like S-100A10 99.1 3.9E-10 8.4E-15 77.1 8.2 67 76-143 7-80 (94)
31 cd05026 S-100Z S-100Z: S-100Z 99.1 5.4E-10 1.2E-14 76.2 8.6 67 76-143 9-82 (93)
32 cd00052 EH Eps15 homology doma 99.1 5.1E-10 1.1E-14 71.2 7.7 61 80-143 2-62 (67)
33 cd00213 S-100 S-100: S-100 dom 99.1 4.5E-10 9.7E-15 75.8 7.7 70 73-143 4-80 (88)
34 cd05029 S-100A6 S-100A6: S-100 99.1 4.2E-10 9.1E-15 75.9 7.4 68 75-143 8-80 (88)
35 cd05029 S-100A6 S-100A6: S-100 99.1 7.6E-10 1.6E-14 74.6 7.6 64 141-207 7-75 (88)
36 cd05031 S-100A10_like S-100A10 99.0 1E-09 2.2E-14 75.1 7.2 63 141-206 5-74 (94)
37 cd05025 S-100A1 S-100A1: S-100 99.0 1.4E-09 3E-14 74.1 7.0 61 143-206 8-75 (92)
38 KOG0034 Ca2+/calmodulin-depend 99.0 6.6E-09 1.4E-13 79.4 11.3 93 79-172 68-175 (187)
39 PF13833 EF-hand_8: EF-hand do 99.0 1.8E-09 4E-14 65.9 6.5 52 90-142 1-53 (54)
40 KOG2643 Ca2+ binding protein, 99.0 4E-10 8.7E-15 94.1 4.6 95 77-172 233-346 (489)
41 KOG0028 Ca2+-binding protein ( 99.0 1.1E-08 2.3E-13 74.8 10.7 97 75-172 67-170 (172)
42 cd00051 EFh EF-hand, calcium b 99.0 3.6E-09 7.8E-14 65.4 7.2 61 79-140 2-62 (63)
43 cd05026 S-100Z S-100Z: S-100Z 99.0 3.4E-09 7.3E-14 72.3 7.6 64 141-207 7-77 (93)
44 cd00052 EH Eps15 homology doma 99.0 1.8E-09 3.9E-14 68.6 5.9 55 147-206 2-56 (67)
45 smart00027 EH Eps15 homology d 99.0 3E-09 6.4E-14 73.0 7.0 59 143-206 9-67 (96)
46 cd05023 S-100A11 S-100A11: S-1 98.9 6.6E-09 1.4E-13 70.2 8.5 67 76-143 8-81 (89)
47 cd00213 S-100 S-100: S-100 dom 98.9 4.2E-09 9.2E-14 71.0 6.2 62 142-206 6-74 (88)
48 PLN02964 phosphatidylserine de 98.9 5.7E-09 1.2E-13 93.0 7.4 116 83-206 113-238 (644)
49 PF13833 EF-hand_8: EF-hand do 98.9 6.3E-09 1.4E-13 63.5 5.3 48 157-207 1-49 (54)
50 cd05023 S-100A11 S-100A11: S-1 98.8 1.2E-08 2.6E-13 68.9 6.6 63 142-207 7-76 (89)
51 cd00051 EFh EF-hand, calcium b 98.8 1.6E-08 3.5E-13 62.3 6.7 58 146-206 2-59 (63)
52 KOG0041 Predicted Ca2+-binding 98.8 1.6E-08 3.4E-13 76.6 7.3 104 68-172 90-203 (244)
53 KOG0038 Ca2+-binding kinase in 98.8 3.2E-08 6.9E-13 71.3 8.0 89 114-206 72-172 (189)
54 cd00252 SPARC_EC SPARC_EC; ext 98.8 4.1E-08 9E-13 69.4 7.3 63 73-140 44-106 (116)
55 KOG0040 Ca2+-binding actin-bun 98.7 1E-07 2.2E-12 89.5 11.1 131 68-207 2244-2394(2399)
56 cd05030 calgranulins Calgranul 98.7 7.5E-08 1.6E-12 64.9 7.6 67 76-143 7-80 (88)
57 KOG2562 Protein phosphatase 2 98.7 1.3E-07 2.9E-12 79.8 10.5 117 83-206 284-419 (493)
58 PF14658 EF-hand_9: EF-hand do 98.7 7.9E-08 1.7E-12 60.4 6.3 60 81-141 2-63 (66)
59 cd00252 SPARC_EC SPARC_EC; ext 98.7 3E-07 6.4E-12 65.1 10.0 58 142-206 46-103 (116)
60 PF12763 EF-hand_4: Cytoskelet 98.7 1.4E-07 3E-12 65.4 7.5 72 69-144 2-73 (104)
61 KOG4251 Calcium binding protei 98.7 3.3E-08 7.2E-13 77.1 4.8 128 76-207 100-260 (362)
62 cd05030 calgranulins Calgranul 98.6 6.4E-08 1.4E-12 65.3 5.3 62 143-207 7-75 (88)
63 KOG0036 Predicted mitochondria 98.6 7E-07 1.5E-11 74.5 11.9 104 76-189 50-159 (463)
64 PF14658 EF-hand_9: EF-hand do 98.6 1.8E-07 3.9E-12 58.8 5.2 57 148-206 2-59 (66)
65 KOG0041 Predicted Ca2+-binding 98.5 3.1E-07 6.8E-12 69.6 7.0 71 133-206 87-158 (244)
66 PF00036 EF-hand_1: EF hand; 98.5 1.8E-07 3.8E-12 49.5 3.8 29 78-106 1-29 (29)
67 PF00036 EF-hand_1: EF hand; 98.5 1.8E-07 4E-12 49.4 3.6 29 145-173 1-29 (29)
68 cd05024 S-100A10 S-100A10: A s 98.5 2.5E-06 5.4E-11 57.4 9.8 67 76-144 7-78 (91)
69 PF13405 EF-hand_6: EF-hand do 98.4 4.9E-07 1.1E-11 48.6 3.6 30 145-174 1-31 (31)
70 KOG0030 Myosin essential light 98.4 1.4E-06 3.1E-11 62.4 6.6 66 73-140 84-149 (152)
71 PF13405 EF-hand_6: EF-hand do 98.4 6.6E-07 1.4E-11 48.1 3.8 30 78-107 1-31 (31)
72 KOG0031 Myosin regulatory ligh 98.3 3.2E-06 6.9E-11 61.6 7.6 65 76-141 100-164 (171)
73 KOG1029 Endocytic adaptor prot 98.3 5.9E-06 1.3E-10 73.8 10.1 128 70-206 9-252 (1118)
74 KOG0751 Mitochondrial aspartat 98.3 5.6E-06 1.2E-10 70.7 9.4 122 77-205 108-238 (694)
75 KOG0169 Phosphoinositide-speci 98.3 9E-06 2E-10 72.7 10.7 134 71-206 130-269 (746)
76 KOG0751 Mitochondrial aspartat 98.2 1.1E-05 2.3E-10 69.1 10.1 129 71-206 27-170 (694)
77 cd05024 S-100A10 S-100A10: A s 98.2 7.9E-06 1.7E-10 55.0 7.3 61 142-206 6-71 (91)
78 KOG4251 Calcium binding protei 98.2 3.6E-06 7.7E-11 66.0 5.5 123 80-206 193-340 (362)
79 KOG2643 Ca2+ binding protein, 98.1 7.1E-06 1.5E-10 69.1 6.8 108 88-205 210-340 (489)
80 PF14788 EF-hand_10: EF hand; 98.1 9.9E-06 2.1E-10 48.1 5.5 50 93-143 1-50 (51)
81 KOG0377 Protein serine/threoni 98.1 1.7E-05 3.8E-10 67.0 8.9 99 68-172 507-615 (631)
82 PRK12309 transaldolase/EF-hand 98.1 2.2E-05 4.8E-10 66.8 9.2 59 106-172 327-385 (391)
83 PF12763 EF-hand_4: Cytoskelet 98.1 1.4E-05 3E-10 55.4 6.3 57 144-206 10-66 (104)
84 PF13202 EF-hand_5: EF hand; P 98.0 8.2E-06 1.8E-10 41.5 3.3 25 79-103 1-25 (25)
85 PF13202 EF-hand_5: EF hand; P 98.0 6.9E-06 1.5E-10 41.7 3.0 25 146-170 1-25 (25)
86 KOG0046 Ca2+-binding actin-bun 97.9 3E-05 6.4E-10 66.8 6.3 73 69-143 11-86 (627)
87 PRK12309 transaldolase/EF-hand 97.8 5.4E-05 1.2E-09 64.4 7.0 53 76-142 333-385 (391)
88 KOG0038 Ca2+-binding kinase in 97.8 0.00014 3E-09 52.7 7.7 92 80-172 74-177 (189)
89 KOG0998 Synaptic vesicle prote 97.8 0.0001 2.3E-09 68.5 8.9 132 66-206 118-340 (847)
90 PF05042 Caleosin: Caleosin re 97.6 0.0011 2.3E-08 49.7 10.0 125 76-204 6-159 (174)
91 KOG2562 Protein phosphatase 2 97.6 0.00044 9.6E-09 58.9 8.8 85 115-206 227-338 (493)
92 PF10591 SPARC_Ca_bdg: Secrete 97.5 3.5E-05 7.6E-10 54.3 0.8 59 77-138 54-112 (113)
93 KOG4666 Predicted phosphate ac 97.5 0.00036 7.8E-09 57.0 6.4 103 70-173 252-360 (412)
94 KOG1707 Predicted Ras related/ 97.4 0.00099 2.1E-08 58.6 9.1 105 71-175 189-346 (625)
95 PF14788 EF-hand_10: EF hand; 97.4 0.0003 6.4E-09 41.8 4.0 42 131-172 2-49 (51)
96 KOG4666 Predicted phosphate ac 97.4 0.00016 3.5E-09 59.0 3.7 88 113-206 259-354 (412)
97 KOG4065 Uncharacterized conser 97.3 0.00087 1.9E-08 46.6 5.6 67 69-138 61-141 (144)
98 KOG0040 Ca2+-binding actin-bun 97.3 0.00081 1.8E-08 64.4 7.1 60 144-206 2253-2319(2399)
99 KOG4065 Uncharacterized conser 97.2 0.00087 1.9E-08 46.7 5.3 57 148-207 71-141 (144)
100 KOG1029 Endocytic adaptor prot 97.2 0.0043 9.3E-08 56.2 10.5 70 71-143 189-258 (1118)
101 KOG0046 Ca2+-binding actin-bun 97.1 0.0012 2.5E-08 57.2 5.7 60 143-206 18-80 (627)
102 KOG1924 RhoA GTPase effector D 97.1 0.0016 3.4E-08 59.0 6.6 13 128-140 759-771 (1102)
103 smart00054 EFh EF-hand, calciu 97.1 0.00089 1.9E-08 33.8 3.2 27 79-105 2-28 (29)
104 smart00054 EFh EF-hand, calciu 97.0 0.00086 1.9E-08 33.8 3.1 27 146-172 2-28 (29)
105 PF10591 SPARC_Ca_bdg: Secrete 97.0 0.00019 4.1E-09 50.6 0.4 59 143-206 53-111 (113)
106 KOG1955 Ral-GTPase effector RA 97.0 0.008 1.7E-07 51.9 9.8 70 70-142 224-293 (737)
107 PF09279 EF-hand_like: Phospho 96.9 0.0021 4.6E-08 42.4 4.6 61 145-206 1-64 (83)
108 KOG0035 Ca2+-binding actin-bun 96.7 0.0072 1.6E-07 55.9 7.8 97 70-168 740-848 (890)
109 KOG2391 Vacuolar sorting prote 96.4 0.023 5E-07 46.9 8.5 21 13-33 141-161 (365)
110 KOG1924 RhoA GTPase effector D 96.4 0.017 3.7E-07 52.5 8.0 7 131-137 713-719 (1102)
111 PF09279 EF-hand_like: Phospho 96.2 0.013 2.8E-07 38.6 5.1 61 78-140 1-67 (83)
112 PF05517 p25-alpha: p25-alpha 96.2 0.08 1.7E-06 39.4 9.8 84 79-172 1-90 (154)
113 KOG0042 Glycerol-3-phosphate d 95.7 0.017 3.8E-07 50.8 4.7 73 70-143 586-658 (680)
114 PLN02952 phosphoinositide phos 95.5 0.062 1.3E-06 48.3 7.8 79 127-206 13-105 (599)
115 KOG2243 Ca2+ release channel ( 95.1 0.086 1.9E-06 51.1 7.3 56 148-207 4061-4116(5019)
116 KOG3555 Ca2+-binding proteogly 95.0 0.06 1.3E-06 44.7 5.6 96 78-174 212-312 (434)
117 KOG0998 Synaptic vesicle prote 94.9 0.034 7.4E-07 52.2 4.5 121 77-206 11-185 (847)
118 PF08726 EFhand_Ca_insen: Ca2+ 94.7 0.02 4.4E-07 36.5 1.7 56 144-207 6-65 (69)
119 KOG1265 Phospholipase C [Lipid 94.6 0.48 1E-05 44.2 10.6 116 88-206 159-294 (1189)
120 PF05042 Caleosin: Caleosin re 94.3 0.4 8.6E-06 36.1 8.0 26 114-140 8-33 (174)
121 KOG0169 Phosphoinositide-speci 94.1 0.3 6.5E-06 44.6 8.3 78 110-191 133-216 (746)
122 KOG1955 Ral-GTPase effector RA 93.7 0.14 3E-06 44.6 5.2 59 143-206 230-288 (737)
123 KOG4347 GTPase-activating prot 93.6 0.13 2.7E-06 46.2 4.9 71 94-166 535-612 (671)
124 KOG3866 DNA-binding protein of 93.4 0.29 6.2E-06 40.2 6.4 59 146-207 246-320 (442)
125 PF05517 p25-alpha: p25-alpha 93.4 0.26 5.7E-06 36.6 5.7 49 155-206 13-64 (154)
126 KOG4578 Uncharacterized conser 93.2 0.033 7.1E-07 45.9 0.7 26 146-171 372-397 (421)
127 KOG4347 GTPase-activating prot 92.5 0.32 7E-06 43.7 5.8 90 77-171 555-646 (671)
128 KOG3866 DNA-binding protein of 91.4 0.31 6.7E-06 40.1 4.2 24 81-104 248-271 (442)
129 KOG0042 Glycerol-3-phosphate d 91.3 0.25 5.5E-06 43.8 3.8 59 145-206 594-652 (680)
130 KOG1707 Predicted Ras related/ 91.1 0.27 5.8E-06 43.8 3.8 71 70-143 308-378 (625)
131 KOG2243 Ca2+ release channel ( 91.0 0.45 9.7E-06 46.5 5.2 57 83-141 4063-4119(5019)
132 PRK09430 djlA Dna-J like membr 90.7 3.7 8E-05 33.4 9.8 97 89-190 67-176 (267)
133 KOG1923 Rac1 GTPase effector F 90.5 2.1 4.6E-05 39.4 8.9 27 147-174 443-469 (830)
134 PF14513 DAG_kinase_N: Diacylg 90.4 1.5 3.2E-05 32.0 6.5 65 128-192 5-81 (138)
135 KOG3555 Ca2+-binding proteogly 89.9 0.6 1.3E-05 39.0 4.6 67 71-142 244-310 (434)
136 PLN02952 phosphoinositide phos 89.3 3.8 8.3E-05 37.2 9.6 81 90-172 13-110 (599)
137 KOG0035 Ca2+-binding actin-bun 89.0 0.7 1.5E-05 43.3 4.9 61 143-206 746-811 (890)
138 cd07313 terB_like_2 tellurium 88.8 2.9 6.3E-05 28.4 6.9 75 90-167 12-95 (104)
139 KOG4578 Uncharacterized conser 88.6 0.37 8.1E-06 39.9 2.6 58 83-141 339-397 (421)
140 PF09069 EF-hand_3: EF-hand; 88.6 5.6 0.00012 26.7 7.9 62 77-142 3-75 (90)
141 PF09069 EF-hand_3: EF-hand; 88.5 1.9 4.2E-05 28.9 5.5 58 143-206 2-70 (90)
142 PF09068 EF-hand_2: EF hand; 87.0 5.7 0.00012 28.5 7.7 79 76-172 40-125 (127)
143 KOG0917 Uncharacterized conser 86.6 8.3 0.00018 31.3 8.9 26 3-28 191-216 (338)
144 PF11116 DUF2624: Protein of u 84.9 9.1 0.0002 25.4 8.0 52 91-143 12-63 (85)
145 PTZ00373 60S Acidic ribosomal 81.3 11 0.00024 26.4 6.8 55 78-138 4-58 (112)
146 KOG1264 Phospholipase C [Lipid 81.1 6 0.00013 37.1 6.7 136 69-206 135-288 (1267)
147 PF13608 Potyvirid-P3: Protein 79.9 3.1 6.8E-05 36.4 4.6 112 77-203 289-408 (445)
148 COG2818 Tag 3-methyladenine DN 79.8 2.6 5.6E-05 32.2 3.5 53 136-188 47-99 (188)
149 PF08726 EFhand_Ca_insen: Ca2+ 79.5 3.2 7E-05 26.4 3.4 29 75-104 4-32 (69)
150 TIGR03798 ocin_TIGR03798 bacte 78.9 13 0.00028 23.0 6.0 48 133-187 4-51 (64)
151 PF11116 DUF2624: Protein of u 78.6 7.6 0.00017 25.7 5.0 32 160-191 14-45 (85)
152 PLN02222 phosphoinositide phos 78.0 5.3 0.00011 36.2 5.4 58 111-171 23-89 (581)
153 cd05833 Ribosomal_P2 Ribosomal 77.7 17 0.00036 25.4 6.8 55 79-139 3-57 (109)
154 cd07176 terB tellurite resista 77.2 5.3 0.00011 27.2 4.3 72 90-165 15-98 (111)
155 COG4807 Uncharacterized protei 76.6 15 0.00033 26.4 6.3 40 143-191 90-129 (155)
156 PF12631 GTPase_Cys_C: Catalyt 76.5 8.2 0.00018 24.6 4.7 58 132-189 11-72 (73)
157 cd07316 terB_like_DjlA N-termi 75.3 22 0.00048 23.9 8.2 72 90-166 12-95 (106)
158 PF07862 Nif11: Nitrogen fixat 74.6 10 0.00022 22.0 4.5 42 134-182 7-48 (49)
159 cd08315 Death_TRAILR_DR4_DR5 D 74.5 24 0.00051 23.9 9.0 89 76-187 3-91 (96)
160 PF05099 TerB: Tellurite resis 74.0 3.4 7.4E-05 29.6 2.8 73 90-165 36-117 (140)
161 PF05819 NolX: NolX protein; 73.7 51 0.0011 29.3 10.0 102 81-185 303-454 (624)
162 PF08414 NADPH_Ox: Respiratory 73.6 9.5 0.0002 26.0 4.5 14 159-172 79-92 (100)
163 KOG0871 Class 2 transcription 73.4 27 0.00058 25.7 7.0 50 135-189 46-95 (156)
164 KOG3077 Uncharacterized conser 73.3 48 0.001 26.9 10.8 66 76-142 63-129 (260)
165 PF07879 PHB_acc_N: PHB/PHA ac 73.1 5.5 0.00012 24.8 3.0 41 151-191 10-60 (64)
166 KOG2871 Uncharacterized conser 72.9 4.3 9.2E-05 34.4 3.3 42 144-185 309-350 (449)
167 KOG2301 Voltage-gated Ca2+ cha 72.8 6.4 0.00014 39.8 5.0 71 70-142 1410-1484(1592)
168 KOG3449 60S acidic ribosomal p 72.4 15 0.00032 25.5 5.3 54 79-138 3-56 (112)
169 PLN02228 Phosphoinositide phos 72.2 10 0.00023 34.2 5.8 44 145-190 25-70 (567)
170 PTZ00373 60S Acidic ribosomal 72.1 18 0.00039 25.3 5.8 43 149-191 8-50 (112)
171 KOG1923 Rac1 GTPase effector F 71.4 18 0.00039 33.6 7.1 8 131-138 456-463 (830)
172 PLN02230 phosphoinositide phos 71.3 11 0.00023 34.4 5.7 62 144-206 29-97 (598)
173 KOG3449 60S acidic ribosomal p 70.0 21 0.00047 24.8 5.7 44 148-191 5-48 (112)
174 cd08316 Death_FAS_TNFRSF6 Deat 69.8 32 0.00069 23.4 7.2 78 93-188 17-94 (97)
175 PRK10353 3-methyl-adenine DNA 69.0 5.6 0.00012 30.6 3.0 53 136-188 46-98 (187)
176 cd04411 Ribosomal_P1_P2_L12p R 68.8 36 0.00077 23.5 7.3 40 94-139 17-56 (105)
177 TIGR00624 tag DNA-3-methyladen 68.6 7.4 0.00016 29.7 3.6 53 136-188 45-97 (179)
178 PF01023 S_100: S-100/ICaBP ty 68.5 20 0.00043 20.5 4.8 30 143-172 5-36 (44)
179 PF14771 DUF4476: Domain of un 68.3 33 0.00071 22.9 6.7 47 93-142 4-51 (95)
180 PLN02228 Phosphoinositide phos 68.0 33 0.00072 31.1 8.0 63 76-141 23-91 (567)
181 PF07308 DUF1456: Protein of u 67.7 28 0.00061 22.0 5.8 44 94-138 14-57 (68)
182 PHA02335 hypothetical protein 67.5 38 0.00083 23.4 6.9 50 126-175 20-71 (118)
183 PLN00138 large subunit ribosom 66.9 41 0.00089 23.6 6.8 52 80-137 4-55 (113)
184 COG2058 RPP1A Ribosomal protei 65.5 41 0.00088 23.4 6.3 40 93-138 16-55 (109)
185 KOG0506 Glutaminase (contains 65.4 20 0.00044 31.6 5.9 60 81-140 90-156 (622)
186 KOG2871 Uncharacterized conser 65.3 5.6 0.00012 33.8 2.5 65 74-139 306-371 (449)
187 PF13551 HTH_29: Winged helix- 65.3 24 0.00053 23.7 5.5 52 71-122 58-111 (112)
188 cd05833 Ribosomal_P2 Ribosomal 64.7 31 0.00067 24.0 5.8 43 149-191 6-48 (109)
189 TIGR01848 PHA_reg_PhaR polyhyd 64.6 14 0.0003 25.6 3.9 67 121-192 11-81 (107)
190 PF02761 Cbl_N2: CBL proto-onc 64.6 39 0.00084 22.4 6.1 63 109-173 3-71 (85)
191 PLN02222 phosphoinositide phos 64.0 31 0.00068 31.3 7.1 64 76-141 24-89 (581)
192 cd00086 homeodomain Homeodomai 63.4 22 0.00048 20.8 4.5 46 70-122 6-51 (59)
193 PLN02230 phosphoinositide phos 63.3 44 0.00096 30.5 7.9 65 76-141 28-101 (598)
194 KOG4403 Cell surface glycoprot 62.4 33 0.00072 29.8 6.5 61 76-141 67-128 (575)
195 COG0541 Ffh Signal recognition 62.3 48 0.001 29.0 7.6 45 94-142 294-338 (451)
196 KOG1265 Phospholipase C [Lipid 62.3 62 0.0014 31.0 8.7 72 97-172 208-299 (1189)
197 KOG0869 CCAAT-binding factor, 62.0 61 0.0013 24.1 7.0 50 135-189 66-115 (168)
198 TIGR01639 P_fal_TIGR01639 Plas 61.1 21 0.00046 21.9 4.0 32 159-190 8-39 (61)
199 PRK06402 rpl12p 50S ribosomal 60.9 53 0.0012 22.8 6.8 40 93-138 16-55 (106)
200 PF08976 DUF1880: Domain of un 60.9 6 0.00013 27.8 1.6 33 110-143 4-36 (118)
201 PF09336 Vps4_C: Vps4 C termin 60.7 13 0.00028 23.0 3.0 28 160-187 29-56 (62)
202 KOG0039 Ferric reductase, NADH 60.3 12 0.00026 34.5 3.9 69 131-204 4-82 (646)
203 PF12174 RST: RCD1-SRO-TAF4 (R 59.7 23 0.0005 22.5 4.1 16 157-172 38-53 (70)
204 COG2979 Uncharacterized protei 59.3 85 0.0018 24.6 11.1 93 89-189 122-218 (225)
205 KOG4849 mRNA cleavage factor I 59.1 19 0.00042 30.3 4.6 11 94-104 357-367 (498)
206 PF12174 RST: RCD1-SRO-TAF4 (R 59.0 4.6 0.0001 25.7 0.8 42 160-207 8-49 (70)
207 PF04558 tRNA_synt_1c_R1: Glut 58.6 76 0.0016 23.8 7.5 46 144-190 85-130 (164)
208 TIGR01639 P_fal_TIGR01639 Plas 57.9 42 0.0009 20.6 5.1 34 91-124 7-40 (61)
209 PF08461 HTH_12: Ribonuclease 57.8 18 0.00038 22.6 3.3 37 90-127 10-46 (66)
210 KOG4070 Putative signal transd 57.7 22 0.00047 26.3 4.1 67 76-143 11-86 (180)
211 PLN02223 phosphoinositide phos 57.4 27 0.00059 31.3 5.5 45 145-190 17-66 (537)
212 PF00404 Dockerin_1: Dockerin 57.0 15 0.00033 17.5 2.2 16 87-102 1-16 (21)
213 KOG2675 Adenylate cyclase-asso 56.8 9.3 0.0002 33.1 2.4 12 77-88 262-273 (480)
214 cd07313 terB_like_2 tellurium 56.1 9.4 0.0002 25.8 2.0 46 127-172 12-65 (104)
215 PLN00138 large subunit ribosom 56.0 53 0.0011 23.0 5.7 37 155-191 12-48 (113)
216 PHA02105 hypothetical protein 55.9 20 0.00044 21.8 3.1 46 160-206 4-52 (68)
217 PF03352 Adenine_glyco: Methyl 55.6 7.8 0.00017 29.6 1.6 54 136-189 41-94 (179)
218 PTZ00111 DNA replication licen 54.7 2.1E+02 0.0046 27.7 11.2 124 69-192 715-898 (915)
219 KOG4286 Dystrophin-like protei 54.6 90 0.002 29.3 8.3 117 76-192 378-518 (966)
220 cd04411 Ribosomal_P1_P2_L12p R 54.3 70 0.0015 22.1 6.1 31 161-191 17-47 (105)
221 PF00046 Homeobox: Homeobox do 54.2 26 0.00056 20.6 3.6 45 70-121 6-50 (57)
222 KOG1954 Endocytosis/signaling 53.6 29 0.00062 29.9 4.7 60 76-139 443-502 (532)
223 PF03672 UPF0154: Uncharacteri 53.6 29 0.00064 21.7 3.7 33 91-123 29-61 (64)
224 PF14513 DAG_kinase_N: Diacylg 53.2 29 0.00063 25.3 4.2 34 91-124 46-80 (138)
225 cd05831 Ribosomal_P1 Ribosomal 53.1 59 0.0013 22.3 5.6 43 90-138 14-56 (103)
226 PF13331 DUF4093: Domain of un 53.0 65 0.0014 21.4 6.2 52 130-186 30-86 (87)
227 PF04157 EAP30: EAP30/Vps36 fa 53.0 1.1E+02 0.0024 24.0 9.3 83 97-192 61-148 (223)
228 PF09412 XendoU: Endoribonucle 52.9 23 0.00051 28.8 4.1 122 73-206 60-185 (265)
229 PF09415 CENP-X: CENP-S associ 52.8 31 0.00067 22.1 3.8 58 113-171 3-66 (72)
230 PF12995 DUF3879: Domain of un 52.8 51 0.0011 24.7 5.4 56 94-158 2-57 (186)
231 COG4103 Uncharacterized protei 52.0 93 0.002 22.8 7.7 95 81-182 34-140 (148)
232 PRK08181 transposase; Validate 51.7 49 0.0011 26.9 5.8 48 91-142 4-51 (269)
233 COG2818 Tag 3-methyladenine DN 51.5 37 0.0008 26.0 4.7 44 76-119 54-97 (188)
234 PF01885 PTS_2-RNA: RNA 2'-pho 51.5 28 0.00061 26.7 4.2 38 154-191 26-63 (186)
235 KOG4422 Uncharacterized conser 51.2 1.1E+02 0.0024 27.1 7.9 85 102-188 140-267 (625)
236 PF01325 Fe_dep_repress: Iron 51.2 52 0.0011 20.0 4.6 50 144-205 8-57 (60)
237 TIGR02933 nifM_nitrog nitrogen 50.9 1.3E+02 0.0028 24.1 9.2 91 71-172 19-113 (256)
238 PF03672 UPF0154: Uncharacteri 50.9 41 0.00088 21.0 4.0 34 158-191 29-62 (64)
239 COG4103 Uncharacterized protei 50.8 25 0.00055 25.7 3.5 12 160-171 82-93 (148)
240 TIGR02675 tape_meas_nterm tape 50.7 25 0.00054 22.6 3.2 15 128-142 28-42 (75)
241 KOG4403 Cell surface glycoprot 50.6 59 0.0013 28.4 6.2 68 109-181 64-139 (575)
242 cd08315 Death_TRAILR_DR4_DR5 D 50.5 46 0.00099 22.5 4.6 27 112-143 3-29 (96)
243 cd07311 terB_like_1 tellurium 50.3 1E+02 0.0022 22.7 10.2 112 69-189 15-134 (150)
244 KOG4715 SWI/SNF-related matrix 49.6 1.1E+02 0.0024 25.5 7.4 56 80-140 77-132 (410)
245 PF11593 Med3: Mediator comple 49.6 29 0.00064 29.4 4.2 49 92-143 6-55 (379)
246 PF08414 NADPH_Ox: Respiratory 49.5 53 0.0011 22.5 4.7 62 77-143 30-93 (100)
247 PF04391 DUF533: Protein of un 49.1 1.2E+02 0.0026 23.3 7.7 91 89-188 91-186 (188)
248 PF08349 DUF1722: Protein of u 48.9 84 0.0018 21.9 6.0 18 155-172 80-97 (117)
249 PRK00819 RNA 2'-phosphotransfe 48.2 35 0.00075 26.0 4.2 37 155-191 28-64 (179)
250 PF13623 SurA_N_2: SurA N-term 48.2 1.1E+02 0.0023 22.4 6.8 17 170-186 99-115 (145)
251 KOG1954 Endocytosis/signaling 47.9 33 0.00071 29.6 4.2 56 145-206 445-500 (532)
252 PF08461 HTH_12: Ribonuclease 47.5 33 0.00072 21.4 3.3 36 157-192 10-45 (66)
253 PF03979 Sigma70_r1_1: Sigma-7 47.3 28 0.00061 22.7 3.1 33 158-192 19-51 (82)
254 KOG0144 RNA-binding protein CU 47.0 36 0.00077 29.6 4.4 30 163-192 122-151 (510)
255 TIGR00135 gatC glutamyl-tRNA(G 47.0 40 0.00088 22.4 4.0 29 161-189 1-29 (93)
256 PF11848 DUF3368: Domain of un 46.8 43 0.00093 19.4 3.6 33 157-189 14-47 (48)
257 PF07223 DUF1421: Protein of u 46.3 1E+02 0.0023 26.2 7.0 37 94-134 319-355 (358)
258 cd07177 terB_like tellurium re 46.2 82 0.0018 20.6 5.9 73 91-166 13-94 (104)
259 PRK00034 gatC aspartyl/glutamy 46.0 44 0.00095 22.2 4.1 31 160-190 2-32 (95)
260 KOG1785 Tyrosine kinase negati 45.8 1.8E+02 0.004 25.2 8.3 81 91-172 188-274 (563)
261 COG1508 RpoN DNA-directed RNA 45.4 81 0.0018 27.7 6.4 104 71-189 105-219 (444)
262 KOG3077 Uncharacterized conser 45.4 47 0.001 26.9 4.6 81 108-190 59-146 (260)
263 PF06648 DUF1160: Protein of u 44.7 55 0.0012 23.3 4.4 44 144-190 37-81 (122)
264 PRK12270 kgd alpha-ketoglutara 44.6 70 0.0015 31.2 6.2 30 126-155 165-196 (1228)
265 PF06384 ICAT: Beta-catenin-in 43.9 33 0.00071 22.4 2.9 23 165-187 21-43 (78)
266 smart00389 HOX Homeodomain. DN 43.4 55 0.0012 18.9 3.8 44 71-121 7-50 (56)
267 PF12419 DUF3670: SNF2 Helicas 43.4 65 0.0014 23.3 4.9 49 90-139 80-138 (141)
268 cd05831 Ribosomal_P1 Ribosomal 43.1 82 0.0018 21.6 5.0 33 159-191 16-48 (103)
269 TIGR03573 WbuX N-acetyl sugar 42.9 58 0.0013 27.4 5.1 36 129-170 301-342 (343)
270 COG4086 Predicted secreted pro 42.4 1.7E+02 0.0038 24.0 7.4 62 94-156 210-276 (299)
271 cd07894 Adenylation_RNA_ligase 42.1 49 0.0011 28.0 4.5 99 83-186 131-268 (342)
272 PF12307 DUF3631: Protein of u 42.0 1.1E+02 0.0024 23.5 6.0 48 142-192 101-158 (184)
273 PLN02223 phosphoinositide phos 41.7 1.4E+02 0.0031 26.9 7.5 64 76-141 15-91 (537)
274 PF07308 DUF1456: Protein of u 41.4 53 0.0011 20.7 3.6 24 165-188 18-41 (68)
275 PRK06402 rpl12p 50S ribosomal 41.4 1.2E+02 0.0026 21.0 6.0 32 160-191 16-47 (106)
276 cd00171 Sec7 Sec7 domain; Doma 40.8 1.6E+02 0.0035 22.4 11.6 93 97-191 83-182 (185)
277 KOG4286 Dystrophin-like protei 40.7 3.2E+02 0.007 25.9 9.5 122 78-206 421-575 (966)
278 PF03556 Cullin_binding: Culli 40.6 1.2E+02 0.0025 21.3 5.6 42 128-169 74-115 (117)
279 PF05872 DUF853: Bacterial pro 40.4 88 0.0019 27.7 5.8 39 68-106 119-157 (502)
280 PF06648 DUF1160: Protein of u 40.2 77 0.0017 22.6 4.6 45 77-124 37-82 (122)
281 COG2058 RPP1A Ribosomal protei 40.1 1E+02 0.0022 21.4 5.0 32 160-191 16-47 (109)
282 PF12486 DUF3702: ImpA domain 40.0 1.5E+02 0.0033 21.8 8.2 52 128-179 53-108 (148)
283 PF08044 DUF1707: Domain of un 39.9 41 0.00089 20.1 2.8 29 158-186 21-49 (53)
284 PF04876 Tenui_NCP: Tenuivirus 39.5 1.6E+02 0.0034 21.8 7.1 73 112-189 82-161 (175)
285 PF07766 LETM1: LETM1-like pro 39.0 2.1E+02 0.0046 23.2 8.3 35 155-189 214-251 (268)
286 PF09107 SelB-wing_3: Elongati 39.0 61 0.0013 19.1 3.4 30 158-192 8-37 (50)
287 COG2036 HHT1 Histones H3 and H 38.8 1.2E+02 0.0026 20.4 5.4 78 94-175 4-86 (91)
288 PF07128 DUF1380: Protein of u 38.8 57 0.0012 23.8 3.8 31 161-191 27-57 (139)
289 PRK00523 hypothetical protein; 38.2 1.1E+02 0.0023 19.6 4.7 45 146-191 26-70 (72)
290 KOG0506 Glutaminase (contains 36.9 55 0.0012 29.0 4.0 41 149-189 91-131 (622)
291 PRK14981 DNA-directed RNA poly 36.9 71 0.0015 22.2 4.0 30 161-190 79-108 (112)
292 PF07128 DUF1380: Protein of u 36.9 1.2E+02 0.0026 22.1 5.2 31 94-124 27-57 (139)
293 COG3763 Uncharacterized protei 36.4 1.1E+02 0.0025 19.4 5.0 44 147-191 26-69 (71)
294 PF12419 DUF3670: SNF2 Helicas 36.4 51 0.0011 23.9 3.4 46 157-205 80-135 (141)
295 PF10897 DUF2713: Protein of u 35.6 94 0.002 24.2 4.7 25 114-142 165-189 (246)
296 PRK12469 RNA polymerase factor 35.3 2.6E+02 0.0057 24.9 8.1 66 71-140 138-208 (481)
297 PRK10867 signal recognition pa 35.1 2.1E+02 0.0047 25.0 7.5 30 110-143 311-340 (433)
298 PF04157 EAP30: EAP30/Vps36 fa 35.1 2.2E+02 0.0048 22.3 10.1 106 78-190 98-215 (223)
299 PRK10353 3-methyl-adenine DNA 34.6 59 0.0013 25.0 3.6 45 76-120 53-97 (187)
300 PF09808 SNAPc_SNAP43: Small n 34.6 1.2E+02 0.0025 23.3 5.3 28 113-143 4-31 (194)
301 COG0721 GatC Asp-tRNAAsn/Glu-t 33.3 85 0.0019 21.2 3.8 30 160-189 2-31 (96)
302 KOG4004 Matricellular protein 33.3 14 0.00031 28.6 0.0 43 128-170 202-248 (259)
303 COG5178 PRP8 U5 snRNP spliceos 33.1 49 0.0011 32.8 3.4 10 159-168 197-206 (2365)
304 PRK05932 RNA polymerase factor 32.9 2.5E+02 0.0055 24.8 7.6 62 71-140 116-182 (455)
305 KOG4301 Beta-dystrobrevin [Cyt 32.0 85 0.0018 26.6 4.3 54 85-140 118-171 (434)
306 PF13835 DUF4194: Domain of un 32.0 2.1E+02 0.0045 21.1 7.0 61 129-190 70-135 (166)
307 TIGR00959 ffh signal recogniti 31.5 2.7E+02 0.0059 24.4 7.6 29 111-143 311-339 (428)
308 PRK09462 fur ferric uptake reg 31.5 1.5E+02 0.0032 21.5 5.2 44 81-124 21-64 (148)
309 PF11300 DUF3102: Protein of u 31.4 2E+02 0.0044 20.7 6.3 30 93-124 38-68 (130)
310 PF14728 PHTB1_C: PTHB1 C-term 31.1 1.5E+02 0.0033 25.5 5.8 43 162-205 286-328 (377)
311 KOG4004 Matricellular protein 31.0 17 0.00037 28.2 0.1 48 91-141 202-249 (259)
312 PF12983 DUF3867: Protein of u 30.9 2.4E+02 0.0052 21.5 6.8 82 93-192 3-88 (186)
313 PF04433 SWIRM: SWIRM domain; 30.8 40 0.00087 22.0 1.9 43 151-202 44-86 (86)
314 COG5611 Predicted nucleic-acid 30.8 2E+02 0.0043 20.4 5.3 17 148-164 25-41 (130)
315 PRK00819 RNA 2'-phosphotransfe 30.4 1E+02 0.0022 23.5 4.2 37 88-124 28-64 (179)
316 PF02459 Adeno_terminal: Adeno 30.3 1.2E+02 0.0025 27.3 5.0 47 146-192 457-503 (548)
317 PF01885 PTS_2-RNA: RNA 2'-pho 30.2 93 0.002 23.8 4.0 38 87-124 26-63 (186)
318 PF02761 Cbl_N2: CBL proto-onc 29.8 1.7E+02 0.0037 19.4 5.1 51 91-142 20-70 (85)
319 KOG0719 Molecular chaperone (D 29.7 3E+02 0.0065 22.2 7.2 14 178-191 121-134 (264)
320 COG1460 Uncharacterized protei 29.5 1.1E+02 0.0025 21.4 4.0 30 161-190 80-109 (114)
321 PRK09430 djlA Dna-J like membr 29.5 89 0.0019 25.4 4.0 46 127-172 68-120 (267)
322 PLN03081 pentatricopeptide (PP 29.4 4.6E+02 0.0099 24.2 13.6 95 77-174 104-203 (697)
323 COG5502 Uncharacterized conser 29.3 2.2E+02 0.0049 20.6 8.0 43 127-173 72-124 (135)
324 KOG4849 mRNA cleavage factor I 29.2 3.7E+02 0.0079 23.0 13.3 17 90-106 368-384 (498)
325 KOG0260 RNA polymerase II, lar 29.2 3.7E+02 0.0081 27.1 8.3 10 7-16 1445-1454(1605)
326 PHA01351 putative minor struct 29.0 3.9E+02 0.0085 25.2 8.1 79 90-189 589-667 (1070)
327 PF01369 Sec7: Sec7 domain; I 29.0 2.6E+02 0.0056 21.2 9.5 91 98-190 88-186 (190)
328 PRK01844 hypothetical protein; 28.9 1.6E+02 0.0035 18.8 4.6 45 146-191 25-69 (72)
329 PF04361 DUF494: Protein of un 28.7 2.4E+02 0.0052 20.9 5.9 44 145-190 4-48 (155)
330 PF12355 Dscam_C: Down syndrom 28.0 1.3E+02 0.0028 20.9 3.9 6 6-11 24-29 (124)
331 PF12793 SgrR_N: Sugar transpo 27.8 1.7E+02 0.0036 20.5 4.7 38 147-190 7-44 (115)
332 cd05832 Ribosomal_L12p Ribosom 27.7 2.1E+02 0.0046 19.8 6.7 41 93-139 16-56 (106)
333 PF09184 PPP4R2: PPP4R2; Inte 27.4 3.5E+02 0.0077 22.3 9.8 28 113-141 22-49 (288)
334 PRK00771 signal recognition pa 27.0 3.4E+02 0.0075 23.8 7.4 28 112-143 305-332 (437)
335 PF06207 DUF1002: Protein of u 27.0 1.2E+02 0.0026 24.1 4.2 31 106-137 188-218 (225)
336 PRK01294 lipase chaperone; Pro 27.0 3.9E+02 0.0084 22.6 9.8 26 78-104 87-112 (336)
337 COG1321 TroR Mn-dependent tran 26.9 2.6E+02 0.0057 20.6 8.5 106 71-191 4-122 (154)
338 PF02037 SAP: SAP domain; Int 26.8 1.1E+02 0.0024 16.2 4.2 18 160-177 3-20 (35)
339 TIGR01209 RNA ligase, Pab1020 26.8 1.3E+02 0.0028 25.8 4.7 100 83-187 163-302 (374)
340 PF10437 Lip_prot_lig_C: Bacte 26.6 1.5E+02 0.0033 19.1 4.2 44 95-140 43-86 (86)
341 PF01698 FLO_LFY: Floricaula / 26.5 22 0.00047 30.4 0.0 16 74-89 46-61 (386)
342 cd00076 H4 Histone H4, one of 26.4 2E+02 0.0043 19.0 8.4 65 109-177 13-82 (85)
343 COG1062 AdhC Zn-dependent alco 26.3 71 0.0015 27.2 2.9 38 112-153 317-354 (366)
344 cd00893 PI4Kc_III Phosphoinosi 26.3 3.7E+02 0.0081 22.1 9.2 97 90-189 155-265 (289)
345 PLN02859 glutamine-tRNA ligase 26.1 5.3E+02 0.011 24.7 8.7 91 99-191 35-133 (788)
346 TIGR03764 ICE_PFGI_1_parB inte 26.1 3.6E+02 0.0078 21.9 11.4 97 92-190 135-241 (258)
347 PRK10371 DNA-binding transcrip 26.0 3.7E+02 0.0079 22.0 9.8 93 79-187 193-294 (302)
348 cd08313 Death_TNFR1 Death doma 25.9 1.1E+02 0.0024 19.9 3.3 25 161-187 9-33 (80)
349 PRK10788 periplasmic folding c 25.7 5.2E+02 0.011 23.6 10.0 89 99-189 101-221 (623)
350 CHL00091 apcE phycobillisome l 25.6 2.5E+02 0.0055 26.9 6.6 60 127-191 304-364 (877)
351 cd04790 HTH_Cfa-like_unk Helix 25.5 2.9E+02 0.0063 20.7 8.6 36 66-105 35-70 (172)
352 PF07957 DUF3294: Protein of u 25.4 2.6E+02 0.0056 22.0 5.7 10 162-171 157-166 (216)
353 PRK10945 gene expression modul 25.4 1.6E+02 0.0035 18.8 3.7 13 160-172 34-46 (72)
354 TIGR03190 benz_CoA_bzdN benzoy 25.3 4.3E+02 0.0093 22.5 8.5 59 114-173 139-200 (377)
355 PRK03968 DNA primase large sub 25.1 1.5E+02 0.0032 25.5 4.6 44 90-140 118-161 (399)
356 KOG1161 Protein involved in va 25.1 1.6E+02 0.0035 24.6 4.7 16 91-106 17-32 (310)
357 cd08784 Death_DRs Death Domain 25.1 1.9E+02 0.0042 18.5 4.4 70 93-181 8-77 (79)
358 KOG3671 Actin regulatory prote 25.0 2E+02 0.0043 25.8 5.4 8 97-104 496-503 (569)
359 KOG2301 Voltage-gated Ca2+ cha 24.5 98 0.0021 31.9 4.0 30 145-174 1418-1447(1592)
360 PHA02986 hypothetical protein; 24.5 2.3E+02 0.0049 20.3 4.7 53 127-188 23-75 (141)
361 PHA03155 hypothetical protein; 24.3 2.6E+02 0.0056 19.6 5.8 89 93-184 7-103 (115)
362 PF09068 EF-hand_2: EF hand; 24.1 88 0.0019 22.3 2.8 25 81-105 101-125 (127)
363 PF15144 DUF4576: Domain of un 24.1 48 0.001 21.5 1.2 42 158-203 38-79 (88)
364 PRK14954 DNA polymerase III su 24.1 5.8E+02 0.013 23.6 9.2 36 128-163 547-582 (620)
365 TIGR01565 homeo_ZF_HD homeobox 24.0 81 0.0017 19.2 2.2 24 161-186 30-53 (58)
366 PF09687 PRESAN: Plasmodium RE 24.0 2.4E+02 0.0052 19.2 7.3 33 92-124 4-36 (129)
367 PF09888 DUF2115: Uncharacteri 23.9 1.8E+02 0.004 21.7 4.5 77 94-173 1-86 (163)
368 PF09373 PMBR: Pseudomurein-bi 23.8 1.3E+02 0.0027 15.8 3.0 14 129-142 3-16 (33)
369 KOG3330 Transport protein part 23.7 2.3E+02 0.005 21.2 4.8 45 95-142 38-82 (183)
370 PRK04974 glycerol-3-phosphate 23.7 5.8E+02 0.013 24.6 8.6 40 151-190 771-810 (818)
371 COG4359 Uncharacterized conser 23.6 2.2E+02 0.0047 22.1 4.8 43 89-138 9-51 (220)
372 PF01316 Arg_repressor: Argini 23.5 2E+02 0.0043 18.2 4.0 32 159-190 18-49 (70)
373 TIGR01848 PHA_reg_PhaR polyhyd 23.4 2.6E+02 0.0057 19.4 6.5 48 84-132 10-67 (107)
374 PF08356 EF_assoc_2: EF hand a 23.4 2E+02 0.0044 19.2 4.2 54 71-124 4-59 (89)
375 PRK14086 dnaA chromosomal repl 23.3 6E+02 0.013 23.5 10.2 30 159-188 501-535 (617)
376 PF13829 DUF4191: Domain of un 23.2 1.8E+02 0.0038 23.1 4.5 39 153-191 160-198 (224)
377 KOG3423 Transcription initiati 23.1 3.4E+02 0.0073 20.5 9.3 91 77-178 71-170 (176)
378 PF07848 PaaX: PaaX-like prote 23.1 2.1E+02 0.0045 18.1 4.3 42 148-191 8-49 (70)
379 KOG2347 Sec5 subunit of exocys 23.1 3.1E+02 0.0068 26.4 6.6 41 131-172 213-253 (934)
380 PF00690 Cation_ATPase_N: Cati 22.9 1.3E+02 0.0028 18.4 3.1 30 147-176 7-36 (69)
381 PF13276 HTH_21: HTH-like doma 22.8 1.8E+02 0.0039 17.2 4.5 34 91-124 18-52 (60)
382 PF11363 DUF3164: Protein of u 22.7 3.6E+02 0.0079 20.8 6.3 38 150-190 125-162 (195)
383 cd08306 Death_FADD Fas-associa 22.6 2.3E+02 0.005 18.5 5.8 70 97-184 14-83 (86)
384 PF08730 Rad33: Rad33; InterP 22.6 3.5E+02 0.0075 20.5 10.6 41 67-108 4-44 (170)
385 PF13624 SurA_N_3: SurA N-term 22.5 1.6E+02 0.0035 21.1 4.0 27 159-187 119-145 (154)
386 TIGR02395 rpoN_sigma RNA polym 22.4 5.3E+02 0.012 22.6 9.6 62 71-140 91-157 (429)
387 PRK07003 DNA polymerase III su 22.4 2.4E+02 0.0051 27.0 5.8 8 110-117 198-205 (830)
388 PF11014 DUF2852: Protein of u 22.4 2.9E+02 0.0062 19.5 4.9 47 126-188 65-112 (115)
389 KOG2591 c-Mpl binding protein, 22.4 26 0.00057 31.4 -0.3 20 169-188 179-198 (684)
390 PF12872 OST-HTH: OST-HTH/LOTU 22.2 2E+02 0.0044 17.6 5.6 36 128-169 21-56 (74)
391 COG5394 Uncharacterized protei 22.1 1.2E+02 0.0026 22.8 3.1 65 121-190 20-89 (193)
392 PLN03228 methylthioalkylmalate 21.9 1.8E+02 0.0039 26.1 4.8 46 96-142 429-476 (503)
393 PF07499 RuvA_C: RuvA, C-termi 21.9 1.7E+02 0.0037 16.6 3.9 26 163-190 3-28 (47)
394 PF11363 DUF3164: Protein of u 21.8 3.8E+02 0.0082 20.7 6.0 19 118-137 124-142 (195)
395 KOG0148 Apoptosis-promoting RN 21.8 12 0.00027 30.4 -2.2 13 178-190 113-125 (321)
396 PF15297 CKAP2_C: Cytoskeleton 21.7 4.2E+02 0.009 22.6 6.6 68 99-172 106-183 (353)
397 TIGR00624 tag DNA-3-methyladen 21.6 68 0.0015 24.5 1.9 45 76-120 52-96 (179)
398 KOG2303 Predicted NAD synthase 21.6 5.2E+02 0.011 23.4 7.3 92 86-189 534-639 (706)
399 COG5150 Class 2 transcription 21.6 3.1E+02 0.0068 19.6 5.7 25 151-175 56-80 (148)
400 PRK14136 recX recombination re 21.6 4.8E+02 0.011 21.8 7.6 57 78-142 164-220 (309)
401 TIGR03685 L21P_arch 50S riboso 21.4 2.8E+02 0.0062 19.1 6.7 40 93-138 16-55 (105)
402 PF14848 HU-DNA_bdg: DNA-bindi 21.4 2E+02 0.0043 20.2 4.2 33 158-190 26-58 (124)
403 PF13335 Mg_chelatase_2: Magne 21.2 2.7E+02 0.0058 18.7 7.3 68 89-171 27-94 (96)
404 PF06226 DUF1007: Protein of u 20.9 99 0.0021 24.1 2.7 24 150-173 56-79 (212)
405 PF07021 MetW: Methionine bios 20.9 1.4E+02 0.003 23.1 3.4 50 128-177 104-162 (193)
406 smart00513 SAP Putative DNA-bi 20.9 1.5E+02 0.0032 15.6 4.1 18 160-177 3-20 (35)
407 smart00222 Sec7 Sec7 domain. D 20.9 3.8E+02 0.0082 20.3 12.5 93 97-191 84-184 (187)
408 PF09682 Holin_LLH: Phage holi 20.7 2.2E+02 0.0047 19.5 4.2 35 155-189 62-100 (108)
409 KOG4077 Cytochrome c oxidase, 20.7 3.4E+02 0.0074 19.7 8.0 91 75-180 46-142 (149)
410 PHA02771 hypothetical protein; 20.6 1.9E+02 0.004 19.4 3.5 41 95-141 2-42 (90)
411 PRK12821 aspartyl/glutamyl-tRN 20.6 1.9E+02 0.0041 25.6 4.5 35 156-190 384-418 (477)
412 cd04790 HTH_Cfa-like_unk Helix 20.5 3.7E+02 0.0081 20.1 9.1 34 156-191 111-144 (172)
413 PF01475 FUR: Ferric uptake re 20.4 1.8E+02 0.004 19.9 3.8 32 93-124 23-54 (120)
414 PF12949 HeH: HeH/LEM domain; 20.1 89 0.0019 16.9 1.6 17 160-176 3-19 (35)
415 PF13592 HTH_33: Winged helix- 20.1 2E+02 0.0043 17.2 3.5 33 92-124 3-36 (60)
416 PF04963 Sigma54_CBD: Sigma-54 20.1 26 0.00056 26.9 -0.7 49 88-140 45-96 (194)
417 PRK01022 hypothetical protein; 20.0 3.7E+02 0.008 20.2 5.5 80 92-173 2-87 (167)
418 PF05819 NolX: NolX protein; 20.0 6.6E+02 0.014 22.7 11.4 27 166-192 198-224 (624)
419 cd08815 Death_TNFRSF25_DR3 Dea 20.0 1.7E+02 0.0037 19.0 3.2 20 161-182 9-28 (77)
No 1
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.96 E-value=9e-28 Score=182.24 Aligned_cols=129 Identities=48% Similarity=0.788 Sum_probs=122.9
Q ss_pred ChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhh
Q 028539 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGY-QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERY 153 (207)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg-~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~ 153 (207)
+..++..+|..+|+|++|.|+.+||+++|...+ -.++.++|+.|+.+||. +..|+|+|.||..||..+..|+.+|+.+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~-~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~ 133 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDR-DNSGTIGFKEFKALWKYINQWRNVFRTY 133 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-CCCCccCHHHHHHHHHHHHHHHHHHHhc
Confidence 778999999999999999999999999999654 46999999999999999 9999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 154 DRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 154 D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
|+|++|.|+..||+.+|..+|+.++++.++.|+++|+.. .++.|.|++|++
T Consensus 134 D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~---~~g~i~FD~FI~ 184 (221)
T KOG0037|consen 134 DRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRF---GGGRIDFDDFIQ 184 (221)
T ss_pred ccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccc---cCCceeHHHHHH
Confidence 999999999999999999999999999999999999985 589999999984
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=171.06 Aligned_cols=135 Identities=25% Similarity=0.377 Sum_probs=128.7
Q ss_pred CCCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-----
Q 028539 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC----- 142 (207)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~----- 142 (207)
...++++++++|+++|.++|+|++|.|+..||..+|+.+|..++..++.+|+..++. +.+.|+|.+|+.++..
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~--~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA--GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC--CCCccCHHHHHHHHHHHhccC
Confidence 456999999999999999999999999999999999999999999999999999985 7799999999999875
Q ss_pred --HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 143 --LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 143 --l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
.++++.+|+.||+|++|+|+..||+++|+.+|+.+++++++.|++.++.+ ++|.|+|++|++
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d---~dG~i~~~eF~~ 152 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED---GDGEIDYEEFKK 152 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC---CCceEeHHHHHH
Confidence 47999999999999999999999999999999999999999999999999 999999999974
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-25 Score=164.24 Aligned_cols=133 Identities=24% Similarity=0.312 Sum_probs=126.7
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-------
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------- 143 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------- 143 (207)
++.++..+++++|..||++++|.|+..||..+++.+|..++..++..++..+|. +++|.|+|+||+.++...
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~-dg~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDL-DGDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CCCCeEcHHHHHHHHHhhhcccccc
Confidence 566778999999999999999999999999999999999999999999999999 999999999999998753
Q ss_pred ----HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 144 ----GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 144 ----~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
+.++.+|+.||+|++|+|+..||+.+|..+|+.++.++++.+++.+|.| .+|.|+|++|++
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d---~dg~i~f~ef~~ 145 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVD---GDGKVNFEEFVK 145 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCC---CCCeEeHHHHHH
Confidence 2899999999999999999999999999999999999999999999999 999999999974
No 4
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.90 E-value=1.9e-23 Score=147.68 Aligned_cols=133 Identities=18% Similarity=0.305 Sum_probs=123.7
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCC--CCCCcCHHHHHHHHHHH----
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPH--DSLRIGPKEFADLWSCL---- 143 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~--~~g~I~~~eF~~~~~~l---- 143 (207)
.+++++..+++++|.+||+.+||+|+..++.++|+.+|.++++.++.+.+..+++ + +..+|+|++|+-++..+
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~-~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKR-REMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCccc-chhhhhhhhHHHHHHHHHHHHhcc
Confidence 3677888999999999999999999999999999999999999999999999887 6 56899999999998764
Q ss_pred -----HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 144 -----GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 144 -----~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
+++.+.++.||++++|.|...|||++|.++|+.++++|++.+++.... .+|.|+|++|++
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD----~nG~i~YE~fVk 147 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQED----SNGCINYEAFVK 147 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccc----cCCcCcHHHHHH
Confidence 678899999999999999999999999999999999999999999765 789999999974
No 5
>PTZ00183 centrin; Provisional
Probab=99.89 E-value=4.1e-22 Score=148.77 Aligned_cols=135 Identities=24% Similarity=0.331 Sum_probs=126.5
Q ss_pred CCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-----
Q 028539 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL----- 143 (207)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l----- 143 (207)
.+++++++.++..+|..+|.+++|.|+..||..+|+.+|..++...+..++..+|. +++|.|+|+||+.++...
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~-~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDK-DGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCcEeHHHHHHHHHHHhcCCC
Confidence 45888999999999999999999999999999999999988999999999999999 999999999999977642
Q ss_pred --HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 144 --GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 144 --~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
..++.+|+.+|.+++|.|+.+||+.+|..+|..++.+++..++..++.+ ++|.|+|++|++
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~---~~g~i~~~ef~~ 150 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN---GDGEISEEEFYR 150 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC---CCCcCcHHHHHH
Confidence 4799999999999999999999999999999999999999999999998 899999999963
No 6
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5.8e-22 Score=143.47 Aligned_cols=133 Identities=20% Similarity=0.279 Sum_probs=127.5
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-------
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------- 142 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~------- 142 (207)
.+++++.++++..|..||.+++|.|+..||+.+++.+|+.+.+.++.+|+.-+|+ ++.|.|+|++|+..+..
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk-~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDK-EGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhh-ccCceechHHHHHHHHHHHhccCc
Confidence 4788889999999999999999999999999999999999999999999999999 99999999999998754
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.++++.+|+.+|.|++|+|+..+|+.+.+.+|++++++++++||..+|.+ .+|.|+-++|+
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d---~dgevneeEF~ 165 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRD---GDGEVNEEEFI 165 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhccc---ccccccHHHHH
Confidence 37899999999999999999999999999999999999999999999999 99999999996
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.88 E-value=1.4e-21 Score=144.17 Aligned_cols=133 Identities=20% Similarity=0.286 Sum_probs=124.8
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------ 143 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------ 143 (207)
.++++++..+++.|..+|.+++|.|+.+||..++..++..+....+..++..+|. +++|.|+|+||+.++...
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA-DGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCc-CCCCcCcHHHHHHHHHHhccCCcH
Confidence 4778888999999999999999999999999999999988899999999999999 999999999999987642
Q ss_pred -HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 144 -GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 144 -~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
..+..+|+.+|.+++|.|+.+||+.+|..+|..++.+++..++..+|.+ ++|.|+|++|+
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~ 143 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD---GDGQINYEEFV 143 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC---CCCcCcHHHHH
Confidence 5789999999999999999999999999999999999999999999998 89999999996
No 8
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.87 E-value=2e-21 Score=139.69 Aligned_cols=132 Identities=21% Similarity=0.301 Sum_probs=124.5
Q ss_pred CCCCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH----
Q 028539 67 GHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC---- 142 (207)
Q Consensus 67 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~---- 142 (207)
-++.+.+.++.+++++|.++|.|+||.|+.++|+.++.++|-..+++++..++. ...|-|+|.-|+.++..
T Consensus 22 vFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~-----Ea~gPINft~FLTmfGekL~g 96 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK-----EAPGPINFTVFLTMFGEKLNG 96 (171)
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH-----hCCCCeeHHHHHHHHHHHhcC
Confidence 367799999999999999999999999999999999999999999999999987 67789999999999865
Q ss_pred ---HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 ---LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 ---l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.+.+..+|+.||.+++|+|..+.|+++|.+.|..++++|++.|++.+-.+ ..|.|+|.+|+
T Consensus 97 tdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d---~~G~~dy~~~~ 160 (171)
T KOG0031|consen 97 TDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPID---KKGNFDYKAFT 160 (171)
T ss_pred CCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcc---cCCceeHHHHH
Confidence 36899999999999999999999999999999999999999999999998 88999999986
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.73 E-value=8.9e-17 Score=122.48 Aligned_cols=91 Identities=30% Similarity=0.355 Sum_probs=84.0
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCC
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDR 157 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~ 157 (207)
.|+.+|+.+|+|++|.|+..||+++|..+|+.++.+.++.|++++|. ..++.|.|++|+++|..|+.+.++|+.+|++.
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~-~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q 203 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDR-FGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQ 203 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcc-ccCCceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 67889999999999999999999999999999999999999999997 77999999999999999999999999999999
Q ss_pred CCccc--HHHHHHH
Q 028539 158 SGKID--LMELRDA 169 (207)
Q Consensus 158 ~G~I~--~~e~~~~ 169 (207)
.|.|+ .++|..+
T Consensus 204 ~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 204 QGSITISYDDFLQM 217 (221)
T ss_pred ceeEEEeHHHHHHH
Confidence 99754 4565544
No 10
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.71 E-value=1.8e-16 Score=120.80 Aligned_cols=130 Identities=20% Similarity=0.306 Sum_probs=109.3
Q ss_pred CCCCCChhHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCC-cCHHHHHHHHHHH----
Q 028539 70 AFPPGTHPDVIRSFEMVDRD-RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLR-IGPKEFADLWSCL---- 143 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d-~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~-I~~~eF~~~~~~l---- 143 (207)
.++..++..|...|..+|++ ++|.|+.+||..+.. +..+ ....+++..++. +.++. |+|++|+.++...
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~N---p~~~rI~~~f~~-~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LALN---PLADRIIDRFDT-DGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-HhcC---cHHHHHHHHHhc-cCCCCccCHHHHHHHHhhhcCCc
Confidence 47888999999999999999 999999999999994 3223 366788888888 87777 9999999988763
Q ss_pred ---HHHHHHHhhhCCCCCCcccHHHHHHHHHHc-CCCCC--HH----HHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 144 ---GQWRAIFERYDRDRSGKIDLMELRDALYSI-GYAVP--PS----VLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 144 ---~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~-g~~~~--~~----~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
++++-+|+.||.+++|+|+.+||.+++..+ +...+ ++ .++.++..+|.+ ++|.|+|+||++
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d---~DG~IsfeEf~~ 171 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTD---GDGKISFEEFCK 171 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCC---CCCcCcHHHHHH
Confidence 589999999999999999999999999975 44444 43 356677888999 999999999974
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.70 E-value=4.5e-16 Score=118.72 Aligned_cols=132 Identities=19% Similarity=0.249 Sum_probs=110.9
Q ss_pred CCCChhHHHHHHHHHcCCC-CCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------
Q 028539 72 PPGTHPDVIRSFEMVDRDR-SGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------ 143 (207)
Q Consensus 72 ~~~~~~~l~~~F~~~D~d~-~G~I~~~e~~~~l~~lg~-~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------ 143 (207)
+.-...+++.+++.|-.++ +|.|+.++|+.++..+.. .-+...+..+|+.+|. +++|.|+|.||+..+..+
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~-~~dg~i~F~Efi~als~~~rGt~e 99 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDK-NKDGTIDFLEFICALSLTSRGTLE 99 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcc-cCCCCcCHHHHHHHHHHHcCCcHH
Confidence 3444567777777777777 899999999999998875 4455677889999999 999999999999988763
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc----CC-------CCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSI----GY-------AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~----g~-------~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
+.++.+|++||.|++|+|+.+|+..+++.+ +. ...++.+..+|+++|.| +||.|+++||++
T Consensus 100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n---~Dg~lT~eef~~ 171 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKN---KDGKLTLEEFIE 171 (193)
T ss_pred HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCC---CCCcccHHHHHH
Confidence 678888999999999999999999999863 31 23466788999999999 999999999974
No 12
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.70 E-value=4.7e-16 Score=128.15 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=121.9
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHH-HHHHHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS-CLGQWRA 148 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~-~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~-~l~~~~~ 148 (207)
..++...+++.+|+.+|.+++|.|+..++.+.+..+.+. ...+....++..+|. +.+++++|.||..-+. ...++.+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~-~~dg~vDy~eF~~Y~~~~E~~l~~ 86 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDA-NRDGRVDYSEFKRYLDNKELELYR 86 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhccc-CcCCcccHHHHHHHHHHhHHHHHH
Confidence 445556679999999999999999999999999998877 778889999999999 9999999999999664 5678999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 149 ~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+|+.+|.+.||.|+.+|+.+.|+.+|..+++++++.+++.+|.+ .+..|+++||.
T Consensus 87 ~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~---g~~~I~~~e~r 141 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKD---GKATIDLEEWR 141 (463)
T ss_pred HHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccC---CCeeeccHHHH
Confidence 99999999999999999999999999999999999999999999 89999999885
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.51 E-value=1.6e-13 Score=121.55 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=99.9
Q ss_pred CCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcC-CCCCHHH---HHHHHHHhcCCCCCCCcCHHHHHHHHHHH-
Q 028539 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGY-QRFSLST---IRLLMFLFRNPHDSLRIGPKEFADLWSCL- 143 (207)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg-~~~~~~~---~~~l~~~~d~~~~~g~I~~~eF~~~~~~l- 143 (207)
..+...++++++++|..+|.|++|.| +..+++.+| ...+..+ ++.+|..+|. +++|.|+|+||+.++..+
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~-DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDY-DEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCC-CCCCeEcHHHHHHHHHHhc
Confidence 56778888999999999999999997 889999999 5788776 8999999999 999999999999988764
Q ss_pred -----HHHHHHHhhhCCCCCCcccHHHHHHHHHH-------------cCCCCCH-HHHHHHHH
Q 028539 144 -----GQWRAIFERYDRDRSGKIDLMELRDALYS-------------IGYAVPP-SVLQLLMD 187 (207)
Q Consensus 144 -----~~~~~~F~~~D~d~~G~I~~~e~~~~l~~-------------~g~~~~~-~~~~~l~~ 187 (207)
++++.+|+.+|+|++|.|+.+||+++|.. ++..++. +++..|++
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH 272 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIH 272 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHH
Confidence 57999999999999999999999999998 6766665 56666663
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.5e-12 Score=102.04 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=111.3
Q ss_pred CCCCCC-hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH------
Q 028539 70 AFPPGT-HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------ 142 (207)
Q Consensus 70 ~l~~~~-~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~------ 142 (207)
.+++++ ...+..+|.++|.+++|.|+..|++.++....-.....++.+-|..+|. +.+|.|+|+|++..+..
T Consensus 69 ~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~-~~Dg~i~~eey~~~~~~~~~~~~ 147 (325)
T KOG4223|consen 69 QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDK-NKDGFITWEEYLPQTYGRVDLPD 147 (325)
T ss_pred hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccceeeHHHhhhhhhhcccCcc
Confidence 444444 5568999999999999999999999998865545556677778888999 99999999999986652
Q ss_pred --------------HHHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 --------------LGQWRAIFERYDRDRSGKIDLMELRDALYS-IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 --------------l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~-~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+...++.|+..|.|++|.++++||..+|.- -...+.+-+|.+-+.-+|.| ++|.|+++||+
T Consensus 148 ~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn---~DG~I~~eEfi 223 (325)
T KOG4223|consen 148 EFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN---GDGKISLEEFI 223 (325)
T ss_pred ccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC---CCCceeHHHHH
Confidence 246788899999999999999999999973 23357778888999999999 99999999997
No 15
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=5.3e-12 Score=101.67 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-----------H
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-----------L 143 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~-~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-----------l 143 (207)
+.+-++.|+..|.|++|.+|.+||..+|+---+ .+..-+|..-+.-.|+ |++|.|+++||+.-+.. +
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dk-n~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDK-NGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhccc-CCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 345678899999999999999999999984332 4556677888999999 99999999999995543 2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.+-...|..+|+|++|+|+.+|++..+.-.+......++..|+...|.| ++++||++|-+
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~d---kD~kLs~eEIl 300 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADED---KDGKLSKEEIL 300 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccC---ccccccHHHHh
Confidence 3455677888999999999999998777666667788999999999999 99999999865
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.33 E-value=7.7e-12 Score=84.37 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHcC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDR-DRSGFIDENELQQALSS-GYQRFSL-STIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 76 ~~~l~~~F~~~D~-d~~G~I~~~e~~~~l~~-lg~~~~~-~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+..++.+|+.||+ +++|.|+..||+.+|+. ++..++. .+++.+++.+|. +++|.|+|+||+.++..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~-d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDV-NQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCC-CCCCCCcHHHHHHHHHHH
Confidence 5678999999999 99999999999999998 8877887 999999999999 999999999999988765
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.29 E-value=1.5e-11 Score=78.37 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHH----HHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLS----TIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~----~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
.|+++|+.+|.|++|.|+.+||+.+++.++...... .++.+|..+|. +++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDT-DGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTT-TSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-CCcCCCcHHHHhccC
Confidence 478999999999999999999999999998766544 44555888888 888888888888764
No 18
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.28 E-value=1.6e-11 Score=84.39 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=67.9
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRA 148 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~ 148 (207)
++++++..++++|..+|.+++|.|+.+||+.+|+.++ ++.+++..++..+|. +++|.|+|+||+.++..+..+..
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~-~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADI-DNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcC-CCCCCcCHHHHHHHHHHHHHHHc
Confidence 6778899999999999999999999999999999875 688999999999999 99999999999999887655544
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.27 E-value=1.1e-11 Score=83.56 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 142 CLGQWRAIFERYDR-DRSGKIDLMELRDALYS-IGYAVPP-SVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 142 ~l~~~~~~F~~~D~-d~~G~I~~~e~~~~l~~-~g~~~~~-~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.+..++.+|+.||+ +++|+|+..||+.+|+. +|..++. ++++.|++.+|.| .+|.|+|+||+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d---~DG~I~F~EF~ 70 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN---QDSKLSFEEFW 70 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC---CCCCCcHHHHH
Confidence 45678999999999 99999999999999999 9988888 9999999999999 99999999997
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.26 E-value=4.6e-11 Score=80.61 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHc-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVD-RDRSG-FIDENELQQALSS-----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 76 ~~~l~~~F~~~D-~d~~G-~I~~~e~~~~l~~-----lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+..++++|+.+| +|++| .|+..||+.+|+. +|...+.+++..+++.+|. +++|.|+|+||+.++..+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~-n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDS-DGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHH
Confidence 567899999998 79999 6999999999999 8988999999999999999 999999999999988754
No 21
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.23 E-value=1.2e-10 Score=97.31 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH--------------
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------------- 142 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~~-lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-------------- 142 (207)
+|...|+.+|.+++|+|+......+++. +|++++-..++--+.. . +.+|.|.|.+.+..+..
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~--~-s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLAN--G-SDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccC--C-CcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 5677899999999999999999999985 5777765555443332 2 45678998887775532
Q ss_pred ----HHHHHHHHhhhCCCCCCcccHHHHHHHHHH----cCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 143 ----LGQWRAIFERYDRDRSGKIDLMELRDALYS----IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 143 ----l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~----~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
...+..+|+.+|.|++|.|+.+||+.+++- +...++++++.++.+.+|.| +||.|+++||++
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~N---kDG~IDlNEfLe 611 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLN---KDGKIDLNEFLE 611 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccC---CCCcccHHHHHH
Confidence 136889999999999999999999999884 45678999999999999999 999999999975
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.22 E-value=2.5e-11 Score=77.37 Aligned_cols=60 Identities=27% Similarity=0.555 Sum_probs=52.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCH----HHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPP----SVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~----~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
+++.+|+.+|++++|.|+.+||+.+++.++...+. +.++.+++.+|.| ++|.|+|+||++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d---~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTD---GDGRISFDEFLN 64 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTT---SSSSEEHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC---CcCCCcHHHHhc
Confidence 47899999999999999999999999999866554 4555669999999 999999999973
No 23
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.21 E-value=9.6e-11 Score=89.58 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------------
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------------ 143 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------------ 143 (207)
..-...+|+.+|.|++|.|+..||..+|..+--.-..+-++=.|+++|. +++|.|+.+|++.++..+
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~-dgdG~It~~Eml~iv~~i~~m~~~~~~~~~ 141 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDL-DGDGYITKEEMLKIVQAIYQMTGSKALPED 141 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecC-CCCceEcHHHHHHHHHHHHHHcccccCCcc
Confidence 3446789999999999999999999999876544555556666999999 999999999999987642
Q ss_pred -----HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 144 -----GQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 144 -----~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
+....+|+.+|.|+||.|+.+||.+.+..
T Consensus 142 ~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 142 EETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 46888999999999999999999998874
No 24
>PTZ00183 centrin; Provisional
Probab=99.21 E-value=3.1e-10 Score=84.33 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------HHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRA 148 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l-g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------~~~~~ 148 (207)
...+..+|..+|.+++|.|+..||..++... ........++.+|..+|. +++|.|+.+||..++..+ ..+..
T Consensus 52 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~-~~~G~i~~~e~~~~l~~~~~~l~~~~~~~ 130 (158)
T PTZ00183 52 KEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDD-DKTGKISLKNLKRVAKELGETITDEELQE 130 (158)
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 3568899999999999999999999987753 344567889999999999 999999999999988753 57899
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHH
Q 028539 149 IFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 149 ~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
+|..+|.+++|.|+.+||..++..
T Consensus 131 ~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 131 MIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHhc
Confidence 999999999999999999998875
No 25
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.21 E-value=2.1e-10 Score=85.20 Aligned_cols=96 Identities=18% Similarity=0.250 Sum_probs=85.6
Q ss_pred ChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCC-----CHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------
Q 028539 75 THPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRF-----SLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------ 143 (207)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~-----~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------ 143 (207)
...++..++..+|.+++|.|+..||..++....... +.+++++.|+.||. +++|.|+..|+..++..+
T Consensus 42 t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~-d~~G~Is~~el~~~l~~lg~~~~~ 120 (151)
T KOG0027|consen 42 TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDK-DGDGFISASELKKVLTSLGEKLTD 120 (151)
T ss_pred CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHcc-CCCCcCcHHHHHHHHHHhCCcCCH
Confidence 467889999999999999999999999999765433 35599999999999 999999999999999875
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALY 171 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~ 171 (207)
+.+..+++..|.|++|.|+.+||..++.
T Consensus 121 ~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 121 EECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 6899999999999999999999988875
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.20 E-value=7.6e-11 Score=79.51 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 142 CLGQWRAIFERYD-RDRSG-KIDLMELRDALYS-----IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 142 ~l~~~~~~F~~~D-~d~~G-~I~~~e~~~~l~~-----~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
.+..++.+|+.|| ++++| .|+.+||+.+|++ +|...++++++.+++.+|.| ++|.|+|++|++
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n---~dG~v~f~eF~~ 75 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD---GDGECDFQEFMA 75 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC---CCCcCcHHHHHH
Confidence 4567899999998 79999 5999999999999 89889999999999999999 999999999973
No 27
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.19 E-value=8.3e-11 Score=87.11 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------HHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRA 148 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l-g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------~~~~~ 148 (207)
..++.++|..+|. +.+.|+..+|..+|... ...-+.++++..|+.||. +++|.|+..+++.++..+ +++..
T Consensus 55 ~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~-d~dG~Is~~eL~~vl~~lge~~~deev~~ 132 (160)
T COG5126 55 EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDK-DHDGYISIGELRRVLKSLGERLSDEEVEK 132 (160)
T ss_pred HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCC-CCCceecHHHHHHHHHhhcccCCHHHHHH
Confidence 4567788888888 88888888888888853 355668888888888888 888888888888888764 67888
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHH
Q 028539 149 IFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 149 ~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
+++.+|.|++|.|+.++|.+++..
T Consensus 133 ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 133 LLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHhcCCCCCceEeHHHHHHHHhc
Confidence 888888888888888888887653
No 28
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.15 E-value=4.7e-10 Score=76.38 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHc-CCCCC-cccHHHHHHHHHh-cC----CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVD-RDRSG-FIDENELQQALSS-GY----QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (207)
Q Consensus 76 ~~~l~~~F~~~D-~d~~G-~I~~~e~~~~l~~-lg----~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~ 144 (207)
+..++++|..+| ++++| .|+..||+.+|+. +| ..++..+++.++..+|. +++|.|+|+||+.++..+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~-d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDE-NGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCC-CCCCcCcHHHHHHHHHHHH
Confidence 467899999997 99999 5999999999985 44 35688999999999999 9999999999999887654
No 29
>PTZ00184 calmodulin; Provisional
Probab=99.13 E-value=9.7e-10 Score=80.65 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------HHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRA 148 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l-g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------~~~~~ 148 (207)
...+..+|..+|.+++|.|+.+||..++... ........+..+|..+|. +++|.|+.+||..++..+ ..+..
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 124 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDR-DGNGFISAAELRHVMTNLGEKLTDEEVDE 124 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCC-CCCCeEeHHHHHHHHHHHCCCCCHHHHHH
Confidence 3578899999999999999999999998854 333455678899999999 999999999999988653 67889
Q ss_pred HHhhhCCCCCCcccHHHHHHHHH
Q 028539 149 IFERYDRDRSGKIDLMELRDALY 171 (207)
Q Consensus 149 ~F~~~D~d~~G~I~~~e~~~~l~ 171 (207)
+|+.+|.+++|.|+.+||..++.
T Consensus 125 ~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 125 MIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHhcCCCCCCcCcHHHHHHHHh
Confidence 99999999999999999998875
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.12 E-value=3.9e-10 Score=77.10 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHcC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDR-DR-SGFIDENELQQALSS-----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 76 ~~~l~~~F~~~D~-d~-~G~I~~~e~~~~l~~-----lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
...++++|..+|. |+ +|.|+..||+.+|+. ++..++..++..++..+|. +++|.|+|+||+.++..+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~-~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQ-NRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHH
Confidence 5678999999997 97 699999999999986 5678899999999999999 999999999999988765
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.12 E-value=5.4e-10 Score=76.21 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHc-CCCCC-cccHHHHHHHHHh-c----CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVD-RDRSG-FIDENELQQALSS-G----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 76 ~~~l~~~F~~~D-~d~~G-~I~~~e~~~~l~~-l----g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+..++++|..+| +|++| .|+..||+.+|+. + ....+..++..++..+|. +++|.|+|+||+.++..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~-n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDS-NKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHH
Confidence 567889999999 78998 5999999999976 3 334577899999999999 999999999999998866
No 32
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.11 E-value=5.1e-10 Score=71.22 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=56.0
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 80 ~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+++|..+|.+++|.|+.+||+.++..+|. +.++++.++..++. +++|.|+|+||+.++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~-~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADT-DKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcC-CCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999999874 88899999999999 999999999999988654
No 33
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.10 E-value=4.5e-10 Score=75.78 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHcC--CCCCcccHHHHHHHHHh-cCCC----CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 73 PGTHPDVIRSFEMVDR--DRSGFIDENELQQALSS-GYQR----FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 73 ~~~~~~l~~~F~~~D~--d~~G~I~~~e~~~~l~~-lg~~----~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
++++..++++|..+|+ +++|.|+..||..+++. ++.. .+..++..++..+|. +++|.|+|++|+.++..+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~-~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDV-NKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcc-CCCCcCcHHHHHHHHHHH
Confidence 3567789999999999 89999999999999986 5543 458999999999999 999999999999988755
No 34
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.10 E-value=4.2e-10 Score=75.89 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHcC-CC-CCcccHHHHHHHHH---hcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 75 THPDVIRSFEMVDR-DR-SGFIDENELQQALS---SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 75 ~~~~l~~~F~~~D~-d~-~G~I~~~e~~~~l~---~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
.+..+..+|.++|. ++ +|.|+..||+.+|+ .+|..++.+++.++++.+|. +++|+|+|+||+.++..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~-d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDR-NKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-CCCCCCcHHHHHHHHHHH
Confidence 35568899999998 67 89999999999997 37888999999999999999 999999999999888755
No 35
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.07 E-value=7.6e-10 Score=74.65 Aligned_cols=64 Identities=22% Similarity=0.479 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhCC-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 141 SCLGQWRAIFERYDR-DR-SGKIDLMELRDALY---SIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 141 ~~l~~~~~~F~~~D~-d~-~G~I~~~e~~~~l~---~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
..+..+..+|..||. ++ +|+|+.+||+++|+ .+|..+++++++++++.+|.| .+|.|+|+||+.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d---~dG~Idf~EFv~ 75 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN---KDQEVNFQEYVT 75 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC---CCCCCcHHHHHH
Confidence 345678899999998 67 89999999999997 379999999999999999999 999999999973
No 36
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.04 E-value=1e-09 Score=75.06 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 141 SCLGQWRAIFERYDR-DR-SGKIDLMELRDALYS-----IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 141 ~~l~~~~~~F~~~D~-d~-~G~I~~~e~~~~l~~-----~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
..+..++.+|..||. ++ +|+|+.+||+.+|+. +|..+++++++.+++.+|.+ ++|.|+|++|+
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~---~dg~I~f~eF~ 74 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN---RDGKVNFEEFV 74 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC---CCCcCcHHHHH
Confidence 345678999999997 87 699999999999986 56778999999999999999 99999999997
No 37
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.01 E-value=1.4e-09 Score=74.05 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-cCC----CCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 LGQWRAIFERYD-RDRSG-KIDLMELRDALYS-IGY----AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 l~~~~~~F~~~D-~d~~G-~I~~~e~~~~l~~-~g~----~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
++.++++|+.|| .+++| .|+.+||+.+|+. +|. ..++++++.|++.+|.+ ++|.|+|++|+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d---~~G~I~f~eF~ 75 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN---GDGEVDFQEFV 75 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC---CCCcCcHHHHH
Confidence 467899999997 99999 5999999999985 543 46889999999999999 99999999997
No 38
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.00 E-value=6.6e-09 Score=79.39 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCCCc-ccHHHHHHHHHhcCCCCCHH-HHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-------------
Q 028539 79 VIRSFEMVDRDRSGF-IDENELQQALSSGYQRFSLS-TIRLLMFLFRNPHDSLRIGPKEFADLWSCL------------- 143 (207)
Q Consensus 79 l~~~F~~~D~d~~G~-I~~~e~~~~l~~lg~~~~~~-~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------------- 143 (207)
..++|+.+|.+++|. |+.++|.++|..+...-..+ -++-.|+.||. +++|.|+.+|+..++..+
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~-~~~G~I~reel~~iv~~~~~~~~~~~~e~~~ 146 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDL-DGDGFISREELKQILRMMVGENDDMSDEQLE 146 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcC-CCCCcCcHHHHHHHHHHHHccCCcchHHHHH
Confidence 367899999999988 99999999999876665555 88889999999 999999999999988653
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
+.+...|..+|.|+||+|+.+||+.++..
T Consensus 147 ~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 147 DIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 35777899999999999999999999875
No 39
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.99 E-value=1.8e-09 Score=65.92 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=48.9
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 90 RSGFIDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~lg~~-~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
++|.|+.++|+.+|+.+|.. ++..++..||..+|. +++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~-~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDT-DGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTT-SSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhccc-CCCCCCCHHHHHHHHHh
Confidence 47999999999999989999 999999999999999 99999999999998864
No 40
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.99 E-value=4e-10 Score=94.05 Aligned_cols=95 Identities=23% Similarity=0.365 Sum_probs=69.0
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHh------cCC----------CCCHHHHHH-HHHHhcCCCCCCCcCHHHHHHH
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSS------GYQ----------RFSLSTIRL-LMFLFRNPHDSLRIGPKEFADL 139 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~------lg~----------~~~~~~~~~-l~~~~d~~~~~g~I~~~eF~~~ 139 (207)
+.++-+|++||.|++|.|+.+||..+.+. +|. ......... +..-|.. ++++.++++||+.+
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~-rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGK-RGNGKLSIDEFLKF 311 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhcc-CCCccccHHHHHHH
Confidence 35667799999999999999999887752 221 111122222 3444666 89999999999999
Q ss_pred HHHH--HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 140 WSCL--GQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 140 ~~~l--~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
+..| +-++.-|..+|+..+|.|+..+|.++|-.
T Consensus 312 ~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~ 346 (489)
T KOG2643|consen 312 QENLQEEILELEFERFDKGDSGAISEVDFAELLLA 346 (489)
T ss_pred HHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHH
Confidence 9876 45666788888887788888888776654
No 41
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.1e-08 Score=74.85 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=86.8
Q ss_pred ChhHHHHHHHHHcCCCCCcccHHHHHHHHH-hcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------HHHH
Q 028539 75 THPDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWR 147 (207)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~-~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------~~~~ 147 (207)
...++.++..-+|+++.|.|+.++|+..+. .++..-+.+++...|+.+|. +.+|.|++.+|..+...| ++++
T Consensus 67 ~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~-D~~Gkis~~~lkrvakeLgenltD~El~ 145 (172)
T KOG0028|consen 67 KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDD-DKTGKISQRNLKRVAKELGENLTDEELM 145 (172)
T ss_pred chHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccc-cCCCCcCHHHHHHHHHHhCccccHHHHH
Confidence 345677788888999999999999999977 56766799999999999999 999999999999999876 4799
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 148 AIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 148 ~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
...+.+|.|++|-|..+||.++++.
T Consensus 146 eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 146 EMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999999999998874
No 42
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.96 E-value=3.6e-09 Score=65.36 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 79 l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
+..+|..+|.+++|.|+..|+..+++.++...+.+.+..++..++. ++++.|+++||+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDK-DGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCeEeHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999 999999999998764
No 43
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.96 E-value=3.4e-09 Score=72.30 Aligned_cols=64 Identities=20% Similarity=0.425 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhhC-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 141 SCLGQWRAIFERYD-RDRSG-KIDLMELRDALYS-I----GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 141 ~~l~~~~~~F~~~D-~d~~G-~I~~~e~~~~l~~-~----g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
..+..++++|+.|| +|++| +|+.+||+.+++. + ....++.+++.|++.+|.| ++|.|+|+||+.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n---~dG~Idf~EF~~ 77 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN---KDNEVDFNEFVV 77 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC---CCCCCCHHHHHH
Confidence 34567889999998 78998 5999999999976 3 3345788999999999999 999999999973
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.96 E-value=1.8e-09 Score=68.64 Aligned_cols=55 Identities=33% Similarity=0.375 Sum_probs=51.2
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+.+|+.+|.+++|.|+.+||+.+++.+| ++.++++.+++.++.+ .+|.|+|++|+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~---~~g~i~~~ef~ 56 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTD---KDGKLDKEEFA 56 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCC---CCCcCCHHHHH
Confidence 5789999999999999999999999987 5889999999999998 89999999996
No 45
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.95 E-value=3e-09 Score=73.00 Aligned_cols=59 Identities=20% Similarity=0.378 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+..++.+|+.+|.+++|.|+.+||+.+|+..+ ++++++..|+..+|.+ .+|.|+|++|+
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~---~~g~I~~~eF~ 67 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADID---NDGELDKDEFA 67 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCC---CCCCcCHHHHH
Confidence 45788999999999999999999999999876 7889999999999998 89999999997
No 46
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.95 E-value=6.6e-09 Score=70.16 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=58.5
Q ss_pred hhHHHHHHHH-HcCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 76 HPDVIRSFEM-VDRDRSG-FIDENELQQALSSG-----YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 76 ~~~l~~~F~~-~D~d~~G-~I~~~e~~~~l~~l-----g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+..|..+|.. +|+++++ .|+..||+.++... +...+..++..++..+|. +++|.|+|+||+.++..+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~-d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDL-NSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHHH
Confidence 5678999999 8888876 99999999999964 335667899999999999 999999999999988765
No 47
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.90 E-value=4.2e-09 Score=70.98 Aligned_cols=62 Identities=16% Similarity=0.366 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhCC--CCCCcccHHHHHHHHHH-cCCCC----CHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 142 CLGQWRAIFERYDR--DRSGKIDLMELRDALYS-IGYAV----PPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 142 ~l~~~~~~F~~~D~--d~~G~I~~~e~~~~l~~-~g~~~----~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.+..++.+|..||+ +++|.|+.+||+.+++. +|..+ +.++++.|+..++.+ ++|.|+|++|+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~---~~g~I~f~eF~ 74 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN---KDGKVDFQEFL 74 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC---CCCcCcHHHHH
Confidence 35678899999999 89999999999999986 55444 589999999999999 99999999997
No 48
>PLN02964 phosphatidylserine decarboxylase
Probab=98.86 E-value=5.7e-09 Score=92.97 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=87.1
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCCC---CHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-----H--HHHHHHHhh
Q 028539 83 FEMVDRDRSGFIDENELQQALSSGYQRF---SLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-----L--GQWRAIFER 152 (207)
Q Consensus 83 F~~~D~d~~G~I~~~e~~~~l~~lg~~~---~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-----l--~~~~~~F~~ 152 (207)
|..+|.+ .++.+++....+.--..+ ..+++.+.|..+|. +++|.| +...+..+.. . ..+..+|+.
T Consensus 113 ~~~~~~~---~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~-dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~ 187 (644)
T PLN02964 113 ISVFETN---RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDP-SSSNKV-VGSIFVSCSIEDPVETERSFARRILAI 187 (644)
T ss_pred EEEEecC---CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCC-CCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 4455554 566666655443200122 23566778899999 999987 4444443331 1 138999999
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 153 YDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 153 ~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+|.|++|.|+.+||..++..++...+++++..+|+.+|.| ++|.|+++||+
T Consensus 188 ~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkD---gdG~Is~dEL~ 238 (644)
T PLN02964 188 VDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLN---GDGVVTIDELA 238 (644)
T ss_pred hCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCC---CCCcCCHHHHH
Confidence 9999999999999999999998888999999999999999 99999999986
No 49
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.86 E-value=6.3e-09 Score=63.51 Aligned_cols=48 Identities=29% Similarity=0.494 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 157 RSGKIDLMELRDALYSIGYA-VPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 157 ~~G~I~~~e~~~~l~~~g~~-~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
.+|.|+.++|+.+|..+|.. ++++++..|+..+|.+ ++|.|+|+||++
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~---~~G~I~~~EF~~ 49 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD---GDGYISFDEFIS 49 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS---SSSSEEHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC---CCCCCCHHHHHH
Confidence 36999999999999889999 9999999999999999 999999999973
No 50
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.83 E-value=1.2e-08 Score=68.88 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=54.5
Q ss_pred HHHHHHHHHhh-hCCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 142 CLGQWRAIFER-YDRDRSG-KIDLMELRDALYSI-----GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 142 ~l~~~~~~F~~-~D~d~~G-~I~~~e~~~~l~~~-----g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
.+..|..+|+. +|+++++ .|+.+||+.++... +...++.+++.+++.+|.| ++|.|+|+||++
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d---~DG~I~f~EF~~ 76 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN---SDGQLDFQEFLN 76 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC---CCCcCcHHHHHH
Confidence 45678899999 6788876 99999999999874 3456788999999999999 999999999973
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.83 E-value=1.6e-08 Score=62.35 Aligned_cols=58 Identities=26% Similarity=0.478 Sum_probs=54.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+..+|..+|.+++|.|+.+||+.+++.++...+.+++..++..++.+ +++.|++++|+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~ef~ 59 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD---GDGKIDFEEFL 59 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC---CCCeEeHHHHH
Confidence 56789999999999999999999999999999999999999999998 88999999996
No 52
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.82 E-value=1.6e-08 Score=76.58 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=86.4
Q ss_pred CCCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH----
Q 028539 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL---- 143 (207)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l---- 143 (207)
++.++..++..+..+|..+|.+.||+|+..||+.+|.+||..-+.--++.++...|. |.+|+|+|.||+-++...
T Consensus 90 F~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVde-d~dgklSfreflLIfrkaaagE 168 (244)
T KOG0041|consen 90 FSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDE-DFDGKLSFREFLLIFRKAAAGE 168 (244)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhc-ccccchhHHHHHHHHHHHhccc
Confidence 566778889999999999999999999999999999999998888889999999999 999999999999988752
Q ss_pred ----HHHHHHHh--hhCCCCCCcccHHHHHHHHHH
Q 028539 144 ----GQWRAIFE--RYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 144 ----~~~~~~F~--~~D~d~~G~I~~~e~~~~l~~ 172 (207)
..+..+=+ ..|....|......|-++-..
T Consensus 169 L~~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~ 203 (244)
T KOG0041|consen 169 LQEDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIE 203 (244)
T ss_pred cccchHHHHHHHhcccchhhhhhhhHHHHHHHHHH
Confidence 12222222 268888888888877766544
No 53
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.80 E-value=3.2e-08 Score=71.29 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHH--
Q 028539 114 TIRLLMFLFRNPHDSLRIGPKEFADLWSCL-------GQWRAIFERYDRDRSGKIDLMELRDALYSIG-YAVPPSVLQ-- 183 (207)
Q Consensus 114 ~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l-------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g-~~~~~~~~~-- 183 (207)
.-+++...|.. ++.|.++|++|+.++..+ -++..+|+.||-|+++.|..++|...+.++- ..++++|++
T Consensus 72 fk~ri~e~FSe-DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 72 FKRRICEVFSE-DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred HHHHHHHHhcc-CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 44577788888 999999999999988764 3677889999999999999999999998763 357877755
Q ss_pred --HHHHHHcCCCCCCCCccchhhhc
Q 028539 184 --LLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 184 --~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+++...|.+ .+|.|++.||-
T Consensus 151 ~ekvieEAD~D---gDgkl~~~eFe 172 (189)
T KOG0038|consen 151 CEKVIEEADLD---GDGKLSFAEFE 172 (189)
T ss_pred HHHHHHHhcCC---CCCcccHHHHH
Confidence 556667888 89999999984
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.75 E-value=4.1e-08 Score=69.43 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 73 ~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
+.....+.-.|..+|.|+||.|+..||..++ +......+..++..+|. +++|.|+++||..++
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~-n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDL-DKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCC-CCCCCCCHHHHHHHH
Confidence 4455667777888888888888888887765 23445666677777777 777777777777766
No 55
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.73 E-value=1e-07 Score=89.48 Aligned_cols=131 Identities=14% Similarity=0.211 Sum_probs=106.3
Q ss_pred CCCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCC-------HHHHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFS-------LSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~-------~~~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
....+++++.+|.-+|+.||++++|+|+..+|+.||+.+|++++ ..++++++...|. +.+|.|+..+|+.+|
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP-~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDP-NRDGYVSLQDYMAFM 2322 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCC-CCcCcccHHHHHHHH
Confidence 45589999999999999999999999999999999999998873 3379999999998 999999999999988
Q ss_pred HH--------HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCC-----CCCCCCccchhhhcC
Q 028539 141 SC--------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR-----SGSRKLGLSFDSFVE 207 (207)
Q Consensus 141 ~~--------l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~-----~~~~~g~I~~~eF~~ 207 (207)
.. -..+..+|+.+|. +.-+|+.+++.. +++.++++-.+.++..- ++.....|+|.+|++
T Consensus 2323 i~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~-------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~ 2394 (2399)
T KOG0040|consen 2323 ISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQ-------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVN 2394 (2399)
T ss_pred HhcccccccchHHHHHHHHHhhc-CCccccHHHHHh-------cCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHH
Confidence 65 2589999999998 678899888642 36777777777666321 001335689998864
No 56
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.72 E-value=7.5e-08 Score=64.92 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHcCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRD--RSGFIDENELQQALS-SGYQRFS----LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 76 ~~~l~~~F~~~D~d--~~G~I~~~e~~~~l~-~lg~~~~----~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+..+..+|..++.+ .+|.|+..||+.+|. .++..++ ..++..+|..+|. +++|.|+|+||+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~-d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDT-NQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHHH
Confidence 56788999999966 479999999999997 5555555 8999999999999 999999999999987743
No 57
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.72 E-value=1.3e-07 Score=79.79 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=91.3
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHh----cCCCCCCCcCHHHHHHHHHHH------HHHHHHHhh
Q 028539 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLF----RNPHDSLRIGPKEFADLWSCL------GQWRAIFER 152 (207)
Q Consensus 83 F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~----d~~~~~g~I~~~eF~~~~~~l------~~~~~~F~~ 152 (207)
|-.+|+|+||.|+.++|...-.. .++...+.++|... -. ..+|+++|++|+-++..+ ..+.-.|+.
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~-~~eGrmdykdFv~FilA~e~k~t~~SleYwFrc 359 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTV-KVEGRMDYKDFVDFILAEEDKDTPASLEYWFRC 359 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhcccccee-eecCcccHHHHHHHHHHhccCCCccchhhheee
Confidence 77899999999999999775543 35677889999833 33 457899999999988765 368899999
Q ss_pred hCCCCCCcccHHHHHHHHHH-------cC-CCCC-HHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 153 YDRDRSGKIDLMELRDALYS-------IG-YAVP-PSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 153 ~D~d~~G~I~~~e~~~~l~~-------~g-~~~~-~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+|.+++|.|+..|++-+... ++ +.++ ++.+.+|+..+... +.+.|+..+|.
T Consensus 360 lDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~---~~~kItLqDlk 419 (493)
T KOG2562|consen 360 LDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPE---DENKITLQDLK 419 (493)
T ss_pred eeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcc---CCCceeHHHHh
Confidence 99999999999999877763 22 3444 44556777777755 67889988875
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=98.69 E-value=7.9e-08 Score=60.42 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=56.4
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCC-CCcCHHHHHHHHH
Q 028539 81 RSFEMVDRDRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDS-LRIGPKEFADLWS 141 (207)
Q Consensus 81 ~~F~~~D~d~~G~I~~~e~~~~l~~lg~-~~~~~~~~~l~~~~d~~~~~-g~I~~~eF~~~~~ 141 (207)
.+|.+||.++.|.|...++..+|+.++. .+.+..++.|...+|. ++. +.|+|+.|+.++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP-~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDP-EGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCC-CCCCceEeHHHHHHHHH
Confidence 3699999999999999999999999998 8999999999999998 886 9999999999876
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.68 E-value=3e-07 Score=65.07 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 142 ~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
....+..+|..+|+|++|.|+.+||..++ + ...+..+..++..+|.| ++|.|+++||+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n---~Dg~IS~~Ef~ 103 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLD---KDGSISLDEWC 103 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCC---CCCCCCHHHHH
Confidence 34678888999999999999999998776 2 24467788899999988 89999999986
No 60
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.65 E-value=1.4e-07 Score=65.41 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHH
Q 028539 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (207)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~ 144 (207)
+.+++++...+..+|..+|. ++|.|+..+.+.+|... .++.+++..||.+.|. +++|.++++||+..+..+.
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~-~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADI-DNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-S-SSSSEEEHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcC-CCCCcCCHHHHHHHHHHHH
Confidence 45889999999999999985 68999999999999887 5788999999999999 9999999999999887553
No 61
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.65 E-value=3.3e-08 Score=77.15 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhc---CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH---------
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSG---YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL--------- 143 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l---g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l--------- 143 (207)
.+.+..+|...|.+-|++|+..|+++.+..- .+.-...+.+..|+..|. +++|.|+|+||..-+...
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDp-dgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDP-DGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCC-CCCCceehhhhhhHHHhhcCcchHHHH
Confidence 5578999999999999999999999887732 122334556678888898 999999999997754321
Q ss_pred -----------HHHHHHHhhhCCCCCCcccH---------HHHHHHHHH-cCCCCCHHHHHHHHHHHcCCCCCCCCccch
Q 028539 144 -----------GQWRAIFERYDRDRSGKIDL---------MELRDALYS-IGYAVPPSVLQLLMDKYDNRSGSRKLGLSF 202 (207)
Q Consensus 144 -----------~~~~~~F~~~D~d~~G~I~~---------~e~~~~l~~-~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~ 202 (207)
.+-+..|..-++++.+.++. +||..+|.- ....+-...+.+|+..+|.| ++.+++.
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqd---gDkqlSv 255 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQD---GDKQLSV 255 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccC---CCeeecc
Confidence 23334444445555555544 888877762 22224455678899999999 9999999
Q ss_pred hhhcC
Q 028539 203 DSFVE 207 (207)
Q Consensus 203 ~eF~~ 207 (207)
.+|+.
T Consensus 256 peFis 260 (362)
T KOG4251|consen 256 PEFIS 260 (362)
T ss_pred hhhhc
Confidence 99984
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.64 E-value=6.4e-08 Score=65.26 Aligned_cols=62 Identities=13% Similarity=0.289 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 143 LGQWRAIFERYDRD--RSGKIDLMELRDALY-SIGYAVP----PSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 143 l~~~~~~F~~~D~d--~~G~I~~~e~~~~l~-~~g~~~~----~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
+..+..+|+.|+.. .+|.|+.+||+.+|. .++..++ +++++.+++.+|.+ ++|.|+|++|+.
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d---~dG~I~f~eF~~ 75 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN---QDGQLSFEEFLV 75 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC---CCCcCcHHHHHH
Confidence 45678899999865 478999999999997 5666666 89999999999999 999999999973
No 63
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.62 E-value=7e-07 Score=74.55 Aligned_cols=104 Identities=25% Similarity=0.305 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------HHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRAI 149 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------~~~~~~ 149 (207)
......+|..+|.|.||.++..||++.+..- +..+.++|..+|. +.+|.|+..|...-+..+ +++..+
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-----E~~l~~~F~~iD~-~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~ 123 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-----ELELYRIFQSIDL-EHDGKIDPNEIWRYLKDLGIQLSDEKAAKF 123 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----HHHHHHHHhhhcc-ccCCccCHHHHHHHHHHhCCccCHHHHHHH
Confidence 3456788999999999999999999988743 5677889999999 999999999988777653 678889
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 150 FERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 150 F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
|+..|+++++.|+.+|+++.+.-. +++.++.++..+
T Consensus 124 ~e~~d~~g~~~I~~~e~rd~~ll~----p~s~i~di~~~W 159 (463)
T KOG0036|consen 124 FEHMDKDGKATIDLEEWRDHLLLY----PESDLEDIYDFW 159 (463)
T ss_pred HHHhccCCCeeeccHHHHhhhhcC----ChhHHHHHHHhh
Confidence 999999999999999999888642 356666665554
No 64
>PF14658 EF-hand_9: EF-hand domain
Probab=98.55 E-value=1.8e-07 Score=58.81 Aligned_cols=57 Identities=25% Similarity=0.473 Sum_probs=52.2
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 148 AIFERYDRDRSGKIDLMELRDALYSIGY-AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 148 ~~F~~~D~d~~G~I~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.+|..||+++.|.|...+++.+|++++. ..++++++.|.+.+|.++ .++.|+++.|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g--~~~~v~~d~F~ 59 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEG--RDGSVNFDTFL 59 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCC--CCceEeHHHHH
Confidence 4799999999999999999999999998 788999999999999983 44999999996
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.53 E-value=3.1e-07 Score=69.61 Aligned_cols=71 Identities=30% Similarity=0.468 Sum_probs=61.7
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 133 PKEFADLWSC-LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 133 ~~eF~~~~~~-l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
|.+|-.+-.. +..+..+|+.||.+.||+|++.||+.++..+|..-+.--+..||+..|.| .+|.|+|-+|+
T Consensus 87 yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded---~dgklSfrefl 158 (244)
T KOG0041|consen 87 YTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDED---FDGKLSFREFL 158 (244)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcc---cccchhHHHHH
Confidence 4566644333 57888999999999999999999999999999988888899999999999 99999999985
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.51 E-value=1.8e-07 Score=49.47 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALSSG 106 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~~l 106 (207)
+++++|+.+|+|++|.|+.+||+.+++.|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 47788999999999999999999888764
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.50 E-value=1.8e-07 Score=49.40 Aligned_cols=29 Identities=28% Similarity=0.688 Sum_probs=24.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q 028539 145 QWRAIFERYDRDRSGKIDLMELRDALYSI 173 (207)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 173 (207)
+++.+|+.+|+|++|+|+.+||+.+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36788999999999999999999888763
No 68
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.49 E-value=2.5e-06 Score=57.36 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSS-----GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG 144 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~-----lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~ 144 (207)
+..+..+|..+-.+ .+.|+..||+.+|+. +.-.-....+.++|..+|. +++|.|+|.||+.++..+.
T Consensus 7 i~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~-n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDD-CRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHHH
Confidence 45688899999844 679999999999983 3334568899999999999 9999999999999998763
No 69
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.38 E-value=4.9e-07 Score=48.57 Aligned_cols=30 Identities=43% Similarity=0.721 Sum_probs=26.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH-HcC
Q 028539 145 QWRAIFERYDRDRSGKIDLMELRDALY-SIG 174 (207)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~e~~~~l~-~~g 174 (207)
+++.+|+.+|.|++|+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999999 565
No 70
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.37 E-value=1.4e-06 Score=62.38 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=58.9
Q ss_pred CCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 73 PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 73 ~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
+...+.+.+.++.||++++|+|...||+++|..+|-.++.+++..|+.-.. |.+|.|+|+.|+..+
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e--D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE--DSNGCINYEAFVKHI 149 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc--ccCCcCcHHHHHHHH
Confidence 344667888999999999999999999999999999999999999988765 678999999999744
No 71
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.37 E-value=6.6e-07 Score=48.07 Aligned_cols=30 Identities=40% Similarity=0.554 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHH-hcC
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALS-SGY 107 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~-~lg 107 (207)
+++.+|+.+|+|++|.|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999999 665
No 72
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.32 E-value=3.2e-06 Score=61.63 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~ 141 (207)
...+..+|..||.+++|.|..+.|+.+|...|-.++.++|..+|+.+-. +..|.|+|.+|+.++.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~-d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPI-DKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCc-ccCCceeHHHHHHHHH
Confidence 4457888999999999999999999999988888999999999998887 8888899988887765
No 73
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=5.9e-06 Score=73.79 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=103.1
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHH-----
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG----- 144 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~----- 144 (207)
.++.++.....+.|..+- -+.|+|+...-+.++-.. .+...++..||.+.|. |.||+++..||...|..+.
T Consensus 9 avT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS--~LP~~VLaqIWALsDl-dkDGrmdi~EfSIAmkLi~lkLqG 84 (1118)
T KOG1029|consen 9 AVTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQS--GLPTPVLAQIWALSDL-DKDGRMDIREFSIAMKLIKLKLQG 84 (1118)
T ss_pred ccchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhc--CCChHHHHHHHHhhhc-CccccchHHHHHHHHHHHHHHhcC
Confidence 355555555555555544 367888888888887655 4667788888888888 8888888888877664310
Q ss_pred --------------------------------------------------------------------------------
Q 028539 145 -------------------------------------------------------------------------------- 144 (207)
Q Consensus 145 -------------------------------------------------------------------------------- 144 (207)
T Consensus 85 ~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~sp 164 (1118)
T KOG1029|consen 85 IQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSP 164 (1118)
T ss_pred CcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred -------------------------------HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCC
Q 028539 145 -------------------------------QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRS 193 (207)
Q Consensus 145 -------------------------------~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~ 193 (207)
+++.+|..+|+...|+|+...-|.+|...+ |+...+..|+..-|.|
T Consensus 165 l~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd- 241 (1118)
T KOG1029|consen 165 LPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVD- 241 (1118)
T ss_pred CCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccC-
Confidence 689999999999999999999999999877 7888899999999999
Q ss_pred CCCCCccchhhhc
Q 028539 194 GSRKLGLSFDSFV 206 (207)
Q Consensus 194 ~~~~g~I~~~eF~ 206 (207)
+||.++-+||+
T Consensus 242 --~DGkL~~dEfi 252 (1118)
T KOG1029|consen 242 --GDGKLSADEFI 252 (1118)
T ss_pred --CCCcccHHHHH
Confidence 99999999996
No 74
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.28 E-value=5.6e-06 Score=70.68 Aligned_cols=122 Identities=16% Similarity=0.258 Sum_probs=89.9
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhcC------CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH--HHHHHH
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGY------QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--LGQWRA 148 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg------~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~--l~~~~~ 148 (207)
..+..+|+.||+.++|.++.+++.+++.... ++.+.+.|+..| .. +....++|.||.+++.. ++.-+.
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~-~~~r~~ny~~f~Q~lh~~~~E~~~q 183 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GD-IRKRHLNYAEFTQFLHEFQLEHAEQ 183 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hh-HHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999998653 345555555544 33 55688999999999876 578999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHH-HHHHHcCCCCCCCCccchhhh
Q 028539 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQL-LMDKYDNRSGSRKLGLSFDSF 205 (207)
Q Consensus 149 ~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~-l~~~~d~~~~~~~g~I~~~eF 205 (207)
+|+..|+.++|.|+.-+|+.++......+...-++. ++.....+ ...+++|..|
T Consensus 184 afr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~---~~H~vSf~yf 238 (694)
T KOG0751|consen 184 AFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGN---DSHQVSFSYF 238 (694)
T ss_pred HHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCC---CccccchHHH
Confidence 999999999999999999999987655544444443 33333333 4445665544
No 75
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.26 E-value=9e-06 Score=72.71 Aligned_cols=134 Identities=17% Similarity=0.179 Sum_probs=110.6
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH---HHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL---GQWR 147 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l---~~~~ 147 (207)
...+....+..+|+..|++++|.++..+...+++.+...+....++.+|+..+. .+.++|.+.+|+.+...+ .++.
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~-~~~~k~~~~~~~~~~~~~~~rpev~ 208 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDN-SQTGKLEEEEFVKFRKELTKRPEVY 208 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHh-hccceehHHHHHHHHHhhccCchHH
Confidence 445556788999999999999999999999999999999999999999999988 889999999999987764 3778
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHHHcCCC-CCCCCccchhhhc
Q 028539 148 AIFERYDRDRSGKIDLMELRDALYSIG--YAVPPSVLQLLMDKYDNRS-GSRKLGLSFDSFV 206 (207)
Q Consensus 148 ~~F~~~D~d~~G~I~~~e~~~~l~~~g--~~~~~~~~~~l~~~~d~~~-~~~~g~I~~~eF~ 206 (207)
.+|..+-.+ .+.++.++|.++|.... ..++.+.+++|++.+.... ....+.++++.|.
T Consensus 209 ~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~ 269 (746)
T KOG0169|consen 209 FLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFT 269 (746)
T ss_pred HHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHH
Confidence 888888544 89999999999999764 2588899999999886430 0034558888875
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.24 E-value=1.1e-05 Score=69.06 Aligned_cols=129 Identities=15% Similarity=0.277 Sum_probs=90.2
Q ss_pred CCCCChhHHHHHHH---HHcCCCCCcccHHHHHHHHHh-cCC-CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH---
Q 028539 71 FPPGTHPDVIRSFE---MVDRDRSGFIDENELQQALSS-GYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--- 142 (207)
Q Consensus 71 l~~~~~~~l~~~F~---~~D~d~~G~I~~~e~~~~l~~-lg~-~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~--- 142 (207)
+...+..+|+.+|. ..++++.-.++.++|.+..-. ++. ..+++.++.+-...|. .+||.|+|+||+.+-..
T Consensus 27 lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~-tKDglisf~eF~afe~~lC~ 105 (694)
T KOG0751|consen 27 LKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQ-TKDGLISFQEFRAFESVLCA 105 (694)
T ss_pred hccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhh-cccccccHHHHHHHHhhccC
Confidence 55566677777775 456778889999999766543 333 4556666666667777 88999999999985443
Q ss_pred -HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC------CCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 -LGQWRAIFERYDRDRSGKIDLMELRDALYSIGY------AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 -l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~------~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
-.....+|..||+.++|.++.+++.+++..... +.+.+-|.. .|..+ +...++|.+|.
T Consensus 106 pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~---~~r~~ny~~f~ 170 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDI---RKRHLNYAEFT 170 (694)
T ss_pred chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhH---HHHhccHHHHH
Confidence 356888999999999999999999999986432 222222322 33333 45566776664
No 77
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.22 E-value=7.9e-06 Score=54.95 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYS-----IGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 142 ~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~-----~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.+..+..+|..|-. +.+.|+..||+.+|.. ++....+..++.+++.+|.| +||.|+|.||+
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n---~Dg~vdF~EF~ 71 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDC---RDGKVGFQSFF 71 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCC---CCCcCcHHHHH
Confidence 35577889999974 4579999999999974 24455788999999999999 99999999997
No 78
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.17 E-value=3.6e-06 Score=65.98 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=93.1
Q ss_pred HHHHHHHcCCCCCccc---------HHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-------
Q 028539 80 IRSFEMVDRDRSGFID---------ENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------- 142 (207)
Q Consensus 80 ~~~F~~~D~d~~G~I~---------~~e~~~~l~~l-g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~------- 142 (207)
.+.|..-++++.+..+ ..||..+|+-- ...+-...++.|++.+|+ +++..++-.||+.+..-
T Consensus 193 tqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDq-dgDkqlSvpeFislpvGTVenqqg 271 (362)
T KOG4251|consen 193 TQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQ-DGDKQLSVPEFISLPVGTVENQQG 271 (362)
T ss_pred HHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhcc-CCCeeecchhhhcCCCcchhhhhc
Confidence 3445444555555544 48888887732 223446688899999999 99999999999986521
Q ss_pred --------HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 --------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 --------l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
....++.=+.+|.+.+|+++.+||..+..-..+.+.-.++..++..-|.| ++..++.++.+
T Consensus 272 qdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n---~~~~Ls~eell 340 (362)
T KOG4251|consen 272 QDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDAN---NDEKLSLEELL 340 (362)
T ss_pred cchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccC---CCcccCHHHHH
Confidence 13455556678999999999999999977677777778899999999988 88899888765
No 79
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.13 E-value=7.1e-06 Score=69.08 Aligned_cols=108 Identities=16% Similarity=0.230 Sum_probs=66.6
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHH---------------------HH
Q 028539 88 RDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG---------------------QW 146 (207)
Q Consensus 88 ~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~---------------------~~ 146 (207)
.+.+|.|+..|..-++..| ..++..++.-|.+||. |++|.|+-+||..++.... .+
T Consensus 210 lg~~GLIsfSdYiFLlTlL--S~p~~~F~IAFKMFD~-dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 210 LGESGLISFSDYIFLLTLL--SIPERNFRIAFKMFDL-DGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred cCCCCeeeHHHHHHHHHHH--ccCcccceeeeeeeec-CCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 3456778877776666655 4556666667777887 8888888888877664320 11
Q ss_pred HH--HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhh
Q 028539 147 RA--IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205 (207)
Q Consensus 147 ~~--~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF 205 (207)
.. .-..|-++++++|+.+||.+++..+ .++.++.=|.+++.. ..|.|+-.+|
T Consensus 287 nsaL~~yFFG~rg~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~---~~g~Ise~DF 340 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSIDEFLKFQENL----QEEILELEFERFDKG---DSGAISEVDF 340 (489)
T ss_pred hhhHHHHhhccCCCccccHHHHHHHHHHH----HHHHHHHHHHHhCcc---cccccCHHHH
Confidence 11 1222466777888888888777753 344445555555554 4455555554
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.13 E-value=9.9e-06 Score=48.12 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+++..|++.+|+.+++.++...+..||..+|. +++|+|+.+||+.++..|
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~-s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDK-SQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-S-SSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcc-cCCCCccHHHHHHHHHHh
Confidence 47889999999999999999999999999999 999999999999887654
No 81
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.12 E-value=1.7e-05 Score=66.95 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=73.2
Q ss_pred CCCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH----
Q 028539 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL---- 143 (207)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l---- 143 (207)
+.+.+++..-++++.++.+|.+ .+..+-=..+++.| .-.+..++.+|+.+|. |+.|.|+.+||...|..+
T Consensus 507 la~~s~d~~v~Y~~~~~~l~~e---~~~~ea~~slvetL--Yr~ks~LetiF~~iD~-D~SG~isldEF~~a~~l~~sh~ 580 (631)
T KOG0377|consen 507 LANGSDDGKVEYKSTLDNLDTE---VILEEAGSSLVETL--YRNKSSLETIFNIIDA-DNSGEISLDEFRTAWKLLSSHM 580 (631)
T ss_pred ccCCCcCcceehHhHHHHhhhh---hHHHHHHhHHHHHH--HhchhhHHHHHHHhcc-CCCCceeHHHHHHHHHHHHhhc
Confidence 3445566666677777776653 22222223344444 2446678889999999 999999999999998764
Q ss_pred ------HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 144 ------GQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 144 ------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
..+.++-+.+|-++||+|+..||.++++-
T Consensus 581 ~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 581 NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 47888899999999999999999998874
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.09 E-value=2.2e-05 Score=66.78 Aligned_cols=59 Identities=20% Similarity=0.199 Sum_probs=48.4
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 106 GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 106 lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
.|...-+..++.+|..+|. +++|.|+++||+. ...+|+.+|.|++|.|+.+||++++..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~-dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDL-DGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCC-CCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3566677888889999998 8999999999853 456788899999999999999888874
No 83
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.07 E-value=1.4e-05 Score=55.42 Aligned_cols=57 Identities=26% Similarity=0.436 Sum_probs=47.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
..+..+|+..|. ++|.|+.++.+.+|...+ ++.+.+..|+...|.+ ++|.++++||+
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~---~dG~L~~~EF~ 66 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADID---NDGKLDFEEFA 66 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SS---SSSEEEHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCC---CCCcCCHHHHH
Confidence 456788888875 579999999999998877 8888999999999998 89999999986
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.02 E-value=8.2e-06 Score=41.47 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHH
Q 028539 79 VIRSFEMVDRDRSGFIDENELQQAL 103 (207)
Q Consensus 79 l~~~F~~~D~d~~G~I~~~e~~~~l 103 (207)
|+++|+.+|.|+||.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998754
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.02 E-value=6.9e-06 Score=41.75 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=20.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHH
Q 028539 146 WRAIFERYDRDRSGKIDLMELRDAL 170 (207)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~e~~~~l 170 (207)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578899999999999999998764
No 86
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.89 E-value=3e-05 Score=66.79 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=64.9
Q ss_pred CCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ---RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~---~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+.++.++++++++.|..+| |++|+|+..|+..++...+. ....++++.++...+. +.+|+|+|+||+.++..+
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~-~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGV-DADGRVEFEEFVGIFLNL 86 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCC-CcCCccCHHHHHHHHHhh
Confidence 4589999999999999999 99999999999999997654 3458899999999999 999999999999977554
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.83 E-value=5.4e-05 Score=64.45 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
...++.+|+.+|.|++|.|+.+||.. +..+|..+|. |++|.|+++||..++..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~-d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDL-NHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCC-CCCCCCcHHHHHHHHHH
Confidence 34678899999999999999999942 5789999999 99999999999998873
No 88
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.80 E-value=0.00014 Score=52.72 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=71.7
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCCCC-HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-----------HHHH
Q 028539 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFS-LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-----------GQWR 147 (207)
Q Consensus 80 ~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~-~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l-----------~~~~ 147 (207)
+++...|..|+.|.++.++|..++..+.-..+ .-.+.-.|+.+|- ++++.|.-++...++..+ ....
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDf-d~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~e 152 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDF-DGDEFIGHDDLEKTLTSLTRDELSDEEVELICE 152 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeec-CCCCcccHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 46677888999999999999999987642222 2233446778899 999999999988877664 2355
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 148 AIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 148 ~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
++.+..|.|++|+|+..||.+++..
T Consensus 153 kvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 153 KVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHhcCCCCCcccHHHHHHHHHh
Confidence 6677789999999999999988764
No 89
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0001 Score=68.53 Aligned_cols=132 Identities=18% Similarity=0.243 Sum_probs=111.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH--
Q 028539 66 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-- 143 (207)
Q Consensus 66 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l-- 143 (207)
.....++..+...+..+|+.+... .|.++....+-+|..- .+....+.++|.+.|. +.+|.+++.||...++..
T Consensus 118 ~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~-d~~g~Ld~~ef~~am~l~~~ 193 (847)
T KOG0998|consen 118 PFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDI-DKDGNLDRDEFAVAMHLIND 193 (847)
T ss_pred ccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccc-cccCCCChhhhhhhhhHHHH
Confidence 346678888889999999998875 8999999888888655 5777888899999999 999999999998865431
Q ss_pred --------------------------------------------------------------------------------
Q 028539 144 -------------------------------------------------------------------------------- 143 (207)
Q Consensus 144 -------------------------------------------------------------------------------- 143 (207)
T Consensus 194 ~l~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~ 273 (847)
T KOG0998|consen 194 LLNGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSW 273 (847)
T ss_pred HhhcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCcccccccccccccccccc
Confidence
Q ss_pred ---------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 144 ---------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 144 ---------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
..+..+|...|++.+|.|+..+.+.++...| +....+..++...+.. +.+.|++++|+
T Consensus 274 ~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~---n~~~ls~~ef~ 340 (847)
T KOG0998|consen 274 SPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQ---NTGTLSKDEFA 340 (847)
T ss_pred CcccChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchh---ccCcccccccc
Confidence 1466789999999999999999999998866 8888899999999998 88999998774
No 90
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.60 E-value=0.0011 Score=49.68 Aligned_cols=125 Identities=17% Similarity=0.084 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--CCCCCCcCHHHH---HHHHHH--------
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN--PHDSLRIGPKEF---ADLWSC-------- 142 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~--~~~~g~I~~~eF---~~~~~~-------- 142 (207)
...|++-...||+|+||.|..-|-...++.||+++--..+..++-.+.. +...+.+.---| +.-+.+
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 4567788889999999999999999999999988766555444433221 011111110001 111100
Q ss_pred ---------HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC-------CCCHHHHHHHHHHHcCCCCCCCCccchhh
Q 028539 143 ---------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGY-------AVPPSVLQLLMDKYDNRSGSRKLGLSFDS 204 (207)
Q Consensus 143 ---------l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~-------~~~~~~~~~l~~~~d~~~~~~~g~I~~~e 204 (207)
-+++.++|..+++.+.+.|+..|+.++++.-.. ....-|...++... .+ ++|.|..|+
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d---~dG~l~Ke~ 159 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KD---KDGFLSKED 159 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cC---cCCcEeHHH
Confidence 257889999999988899999999999996322 22344555555554 33 667776654
No 91
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.59 E-value=0.00044 Score=58.94 Aligned_cols=85 Identities=18% Similarity=0.320 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCCCCCCcCHHHHHHHH--HHH------------------HHHHHH---HhhhCCCCCCcccHHHHHHHHH
Q 028539 115 IRLLMFLFRNPHDSLRIGPKEFADLW--SCL------------------GQWRAI---FERYDRDRSGKIDLMELRDALY 171 (207)
Q Consensus 115 ~~~l~~~~d~~~~~g~I~~~eF~~~~--~~l------------------~~~~~~---F~~~D~d~~G~I~~~e~~~~l~ 171 (207)
++++|-.++. .+.|+|+..+.+..- ..+ +....+ |..+|+|.+|.|+.++|.+...
T Consensus 227 i~rIFy~~nr-s~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 227 IQRIFYYLNR-SRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred hhhhheeeCC-ccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 3455555566 677777776655421 111 233444 7777999999999999887765
Q ss_pred HcCCCCCHHHHHHHHHH----HcCCCCCCCCccchhhhc
Q 028539 172 SIGYAVPPSVLQLLMDK----YDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 172 ~~g~~~~~~~~~~l~~~----~d~~~~~~~g~I~~~eF~ 206 (207)
. .++..-++.||+. +-.- .+|+|+|++|+
T Consensus 306 ~---tlt~~ivdRIFs~v~r~~~~~---~eGrmdykdFv 338 (493)
T KOG2562|consen 306 H---TLTERIVDRIFSQVPRGFTVK---VEGRMDYKDFV 338 (493)
T ss_pred c---chhhHHHHHHHhhccccceee---ecCcccHHHHH
Confidence 3 3567778888882 2232 67889999986
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.48 E-value=3.5e-05 Score=54.31 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=29.6
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~ 138 (207)
..+.=.|..+|.|+||.|+..|+..+...+ ...+.=++.++...|. ++++.|++.||..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~-n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDV-NKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-T-T-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCC-CCCCCCCHHHHcc
Confidence 334444666666666666666666555444 3333344556666666 6666666666554
No 93
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.46 E-value=0.00036 Score=57.00 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=80.0
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-----
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL----- 143 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l-g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l----- 143 (207)
.+.-..-..++..|.+||.+++|.++..|....+..+ +-..+...++.-|.+|+- ..||.+.-++|-.++...
T Consensus 252 ~l~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v-~eDg~~ge~~ls~ilq~~lgv~~ 330 (412)
T KOG4666|consen 252 NLRVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSV-AEDGISGEHILSLILQVVLGVEV 330 (412)
T ss_pred eeecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhccc-ccccccchHHHHHHHHHhcCcce
Confidence 3333334667888999999999999998887777754 455677888888999998 889988888877666542
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSI 173 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 173 (207)
-.+...|+.++...+|+|+.++|+++....
T Consensus 331 l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 331 LRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred eeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 356778999999889999999999887754
No 94
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.43 E-value=0.00099 Score=58.57 Aligned_cols=105 Identities=19% Similarity=0.271 Sum_probs=81.2
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHH-hcCCCCCHHHHHHHHHHhcC--CCC--CCCcCHHHHHHHHHH---
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFRN--PHD--SLRIGPKEFADLWSC--- 142 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~-~lg~~~~~~~~~~l~~~~d~--~~~--~g~I~~~eF~~~~~~--- 142 (207)
+.+..+..|.++|.+.|.|.||.++..|+-.+-+ .++..+...++..+....+. |++ +..++..-|+.+...
T Consensus 189 lkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfie 268 (625)
T KOG1707|consen 189 LKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIE 268 (625)
T ss_pred ccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHH
Confidence 6677788999999999999999999999977655 46777777777666655544 122 455666667665432
Q ss_pred ---------------------------------------------HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC
Q 028539 143 ---------------------------------------------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 175 (207)
Q Consensus 143 ---------------------------------------------l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~ 175 (207)
.+-+..+|..||.|+||.+...||..++..++.
T Consensus 269 rgr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 269 RGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred hccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 136889999999999999999999999998654
No 95
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.41 E-value=0.0003 Score=41.84 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=22.6
Q ss_pred cCHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 131 IGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 131 I~~~eF~~~~~~l------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
++|.|...++..+ .....+|+..|++++|.|..+||.++++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4455555555442 34555666666666666666666655543
No 96
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.40 E-value=0.00016 Score=59.01 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-------HHHHHHHHhhhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHH
Q 028539 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDRSGKIDLMELRDALYS-IGYAVPPSVLQL 184 (207)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-------l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~-~g~~~~~~~~~~ 184 (207)
+.++.+|.+||. +.+|.++|.|.+..+.. ...+..+|++|+.+-||.+...+|--+|+. +| +.+-.+-.
T Consensus 259 d~l~~~f~LFde-~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~ 335 (412)
T KOG4666|consen 259 DKLAPTFMLFDE-GTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPV 335 (412)
T ss_pred hhhhhhhheecC-CCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccc
Confidence 567789999999 99999999998886643 467899999999999999999999999985 45 34444667
Q ss_pred HHHHHcCCCCCCCCccchhhhc
Q 028539 185 LMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 185 l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+|...+.. .++.|+|++|.
T Consensus 336 lf~~i~q~---d~~ki~~~~f~ 354 (412)
T KOG4666|consen 336 LFPSIEQK---DDPKIYASNFR 354 (412)
T ss_pred cchhhhcc---cCcceeHHHHH
Confidence 88888887 88899999885
No 97
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.00087 Score=46.64 Aligned_cols=67 Identities=22% Similarity=0.202 Sum_probs=41.8
Q ss_pred CCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhc------CC----CCCHHHHHHHH----HHhcCCCCCCCcCHH
Q 028539 69 SAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSG------YQ----RFSLSTIRLLM----FLFRNPHDSLRIGPK 134 (207)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l------g~----~~~~~~~~~l~----~~~d~~~~~g~I~~~ 134 (207)
..+++++.+ -..|.+.|.|+++.|+--|+..++... |. -.++.++..|+ +.-|. +++|.|+|-
T Consensus 61 a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDf-N~DG~IDYg 137 (144)
T KOG4065|consen 61 AKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDF-NGDGVIDYG 137 (144)
T ss_pred hhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhccccc-CCCceeeHH
Confidence 345555443 256999999999999999998888743 22 13344444333 33344 566667776
Q ss_pred HHHH
Q 028539 135 EFAD 138 (207)
Q Consensus 135 eF~~ 138 (207)
||+.
T Consensus 138 EflK 141 (144)
T KOG4065|consen 138 EFLK 141 (144)
T ss_pred HHHh
Confidence 6654
No 98
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.26 E-value=0.00081 Score=64.44 Aligned_cols=60 Identities=20% Similarity=0.531 Sum_probs=54.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC--CHH-----HHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAV--PPS-----VLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~--~~~-----~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.++..+|+.||++++|.|+..+|+.+|+++|+.+ .++ +++.++...|.+ .+|+|+..+|+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~---r~G~Vsl~dY~ 2319 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPN---RDGYVSLQDYM 2319 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCC---CcCcccHHHHH
Confidence 4788899999999999999999999999999876 234 799999999999 99999999886
No 99
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.00087 Score=46.66 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=42.8
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHc------CC----CCCHHHHHHHHHHH----cCCCCCCCCccchhhhcC
Q 028539 148 AIFERYDRDRSGKIDLMELRDALYSI------GY----AVPPSVLQLLMDKY----DNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 148 ~~F~~~D~d~~G~I~~~e~~~~l~~~------g~----~~~~~~~~~l~~~~----d~~~~~~~g~I~~~eF~~ 207 (207)
.-|.++|.|++++|+.-|+..++... |. -.++.|++.|+... |.| .+|.|+|-||++
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN---~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFN---GDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccC---CCceeeHHHHHh
Confidence 34788899999999999998888743 22 24567777776654 556 889999999974
No 100
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0043 Score=56.16 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=61.2
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
.+.-....++.+|..+|+..+|+|+...-+.+|-.. .++...+..||.+-|- |+||+|+-+||+..+...
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDv-d~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDV-DGDGKLSADEFILAMHLI 258 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeecc-CCCCcccHHHHHHHHHHH
Confidence 456667788999999999999999999999998766 4777889999999999 999999999999877654
No 101
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.08 E-value=0.0012 Score=57.24 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYA---VPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~---~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+..+++.|...| +++|+|+..|+..++...+.. ...+++++++...+.| .+|.|+|++|+
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~---~~g~v~fe~f~ 80 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVD---ADGRVEFEEFV 80 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCC---cCCccCHHHHH
Confidence 457788999999 999999999999999987653 4688999999999999 99999999997
No 102
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.06 E-value=0.0016 Score=58.97 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=6.5
Q ss_pred CCCcCHHHHHHHH
Q 028539 128 SLRIGPKEFADLW 140 (207)
Q Consensus 128 ~g~I~~~eF~~~~ 140 (207)
+..-.-++|+..+
T Consensus 759 e~l~e~EQF~vvm 771 (1102)
T KOG1924|consen 759 EDLPEPEQFVVVM 771 (1102)
T ss_pred cCCCCHHHHhHHH
Confidence 3444455555544
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.06 E-value=0.00089 Score=33.78 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHh
Q 028539 79 VIRSFEMVDRDRSGFIDENELQQALSS 105 (207)
Q Consensus 79 l~~~F~~~D~d~~G~I~~~e~~~~l~~ 105 (207)
++.+|..+|.+++|.|+..||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567788888888888888888887764
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.05 E-value=0.00086 Score=33.84 Aligned_cols=27 Identities=37% Similarity=0.696 Sum_probs=21.4
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 146 WRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
++.+|+.+|.+++|.|+..||+.+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567788888888888888888887764
No 105
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.01 E-value=0.00019 Score=50.60 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
...+...|..+|.++||.|+..|++.+...+ .-.+..+..+++..|.| +++.|++.|+.
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n---~d~~Is~~EW~ 111 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVN---KDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT----SSSEEHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCC---CCCCCCHHHHc
Confidence 3567788999999999999999988776644 34455688999999999 99999999885
No 106
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.008 Score=51.93 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=63.0
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
++++|+.+.+..-|+-+-.|-.|.|.-.--++++.+. .+...++..||.+.|- +.||-|++.||+..++.
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~-d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDV-DRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhccc-CccccccHHHHHhhHhh
Confidence 5788888889999999999999999999999999876 5778899999999999 99999999999997765
No 107
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.87 E-value=0.0021 Score=42.44 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=47.5
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHHcCCCC-CCCCccchhhhc
Q 028539 145 QWRAIFERYDRDRSGKIDLMELRDALYSI-GY-AVPPSVLQLLMDKYDNRSG-SRKLGLSFDSFV 206 (207)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~-g~-~~~~~~~~~l~~~~d~~~~-~~~g~I~~~eF~ 206 (207)
++..+|+.+-. +.+.|+.++|+++|+.. +. .++.+.+..|+.++..+.. ...+.|++++|+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~ 64 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFT 64 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHH
Confidence 46789999955 78999999999999864 44 5789999999999965410 035789999886
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.68 E-value=0.0072 Score=55.89 Aligned_cols=97 Identities=15% Similarity=-0.031 Sum_probs=75.1
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCH-----HHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSL-----STIRLLMFLFRNPHDSLRIGPKEFADLWSCL- 143 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~-----~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l- 143 (207)
..++....+|+..|..+|+...+.++.++|..+|-.+|.+... .++..|+...|. +.-|.|+|.+|...+...
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~-l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNP-LIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred chhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCc-ccccceeHHHHHhHhhhhh
Confidence 3445667789999999999999999999999999999988774 233344444444 555889999999988652
Q ss_pred ------HHHHHHHhhhCCCCCCcccHHHHHH
Q 028539 144 ------GQWRAIFERYDRDRSGKIDLMELRD 168 (207)
Q Consensus 144 ------~~~~~~F~~~D~d~~G~I~~~e~~~ 168 (207)
..+...|+.+-+++. +|..+||++
T Consensus 819 e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 819 EDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 567888888876655 788888887
No 109
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.023 Score=46.86 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCcCCCCCCCCC
Q 028539 13 SYAPSAPSLPETHNNSSYNNS 33 (207)
Q Consensus 13 ~~~~~~p~~~~~~~~~~~~~~ 33 (207)
.|+.+.|+.|++++..++.+|
T Consensus 141 ~ys~~~~~~p~p~p~~~~~~~ 161 (365)
T KOG2391|consen 141 VYSRSLPSPPPPYPQTEYNTP 161 (365)
T ss_pred cccCCCCCCCCCCCcccCCCC
Confidence 466666666666665544443
No 110
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.38 E-value=0.017 Score=52.54 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=2.9
Q ss_pred cCHHHHH
Q 028539 131 IGPKEFA 137 (207)
Q Consensus 131 I~~~eF~ 137 (207)
+.|+|..
T Consensus 713 mpyeeik 719 (1102)
T KOG1924|consen 713 MPYEEIK 719 (1102)
T ss_pred CCHHHHH
Confidence 4444433
No 111
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.23 E-value=0.013 Score=38.63 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCC----CCCCcCHHHHHHHH
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQ--RFSLSTIRLLMFLFRNPH----DSLRIGPKEFADLW 140 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~--~~~~~~~~~l~~~~d~~~----~~g~I~~~eF~~~~ 140 (207)
++..+|..+-. +.+.|+.++|..+|+.-.- ..+.+.+..++..+.. + ..+.|+++.|+..+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~-~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEP-DERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHH-HHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHcc-chhhcccCCcCHHHHHHHH
Confidence 47788999865 7899999999999985432 3578888888887754 3 24556666665544
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.22 E-value=0.08 Score=39.36 Aligned_cols=84 Identities=13% Similarity=0.250 Sum_probs=58.6
Q ss_pred HHHHHHHHc---CCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhh
Q 028539 79 VIRSFEMVD---RDRSGFIDENELQQALSSGYQ---RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFER 152 (207)
Q Consensus 79 l~~~F~~~D---~d~~G~I~~~e~~~~l~~lg~---~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~ 152 (207)
|+++|..|- ......|+...|..+++..++ .++...+..+|..+.. ....+|+|++|+.++..+. ..
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~-k~~~~I~f~~F~~aL~~lA------~~ 73 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKA-KGARKITFEQFLEALAELA------EK 73 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT--SS-SEEEHHHHHHHHHHHH------HH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhc-CCCcccCHHHHHHHHHHHH------HH
Confidence 456676663 456779999999999996543 5889999999999877 6777899999998887442 22
Q ss_pred hCCCCCCcccHHHHHHHHHH
Q 028539 153 YDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 153 ~D~d~~G~I~~~e~~~~l~~ 172 (207)
.-.+.+ +.+++...|..
T Consensus 74 ~~~~~~---~~~~~~~kl~~ 90 (154)
T PF05517_consen 74 KGKDKS---SAEELKEKLTA 90 (154)
T ss_dssp HSCCCT---HHHHHHHHHHT
T ss_pred hhcccc---cHHHHHHHHHc
Confidence 222222 77777777753
No 113
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.67 E-value=0.017 Score=50.81 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=67.2
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
.+++++...++..|..+|.|+.+.+...++..+|+..+...+.+.+.++....+. +.+|.+...||..++..+
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~-~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADE-NLNGFVELREFLQLMSAI 658 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhcceeeHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999889999999999999998 889999999999887643
No 114
>PLN02952 phosphoinositide phospholipase C
Probab=95.53 E-value=0.062 Score=48.32 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=52.1
Q ss_pred CCCCcCHHHHHHHHHHH--------HHHHHHHhhhCCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHHcCC----
Q 028539 127 DSLRIGPKEFADLWSCL--------GQWRAIFERYDRDRSGKIDLMELRDALYSI-GY-AVPPSVLQLLMDKYDNR---- 192 (207)
Q Consensus 127 ~~g~I~~~eF~~~~~~l--------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~-g~-~~~~~~~~~l~~~~d~~---- 192 (207)
..|.++|++|..++..+ .+++.+|..+-.+ .+.|+.++|..+|... ++ ..+.++++.|+..+-..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 34788899887776654 4888889888544 3679999999999864 33 36677777776654211
Q ss_pred CCCCCCccchhhhc
Q 028539 193 SGSRKLGLSFDSFV 206 (207)
Q Consensus 193 ~~~~~g~I~~~eF~ 206 (207)
.......+++++|.
T Consensus 92 ~~~~~~~l~~~~F~ 105 (599)
T PLN02952 92 TRYTRHGLNLDDFF 105 (599)
T ss_pred ccccccCcCHHHHH
Confidence 00022347777774
No 115
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.09 E-value=0.086 Score=51.05 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=48.1
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 148 AIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 148 ~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
..|+.+|.|+.|.|+..+|..++.... .-+..+++-++.....| .+..++|++|++
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~d---end~~~y~dfv~ 4116 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEAD---ENDMFDYEDFVD 4116 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccC---ccccccHHHHHH
Confidence 358999999999999999999987533 45778899999999988 889999999973
No 116
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.05 E-value=0.06 Score=44.68 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHH--HHHHHHHHHhh
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQ---RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS--CLGQWRAIFER 152 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~---~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~--~l~~~~~~F~~ 152 (207)
.|+.+|..+-.+.++......+..+-..+.. .+-+.++.=||..+|. +.++.|+..|...+.. ...-++..|..
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~-N~Dl~Ld~sEl~~I~ldknE~CikpFfns 290 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDT-NYDLLLDQSELRAIELDKNEACIKPFFNS 290 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhcccc-ccccccCHHHhhhhhccCchhHHHHHHhh
Confidence 4688899888887777666665554333322 3557788889999999 9999999999877664 34678899999
Q ss_pred hCCCCCCcccHHHHHHHHHHcC
Q 028539 153 YDRDRSGKIDLMELRDALYSIG 174 (207)
Q Consensus 153 ~D~d~~G~I~~~e~~~~l~~~g 174 (207)
.|...||.|+..|+...+..-+
T Consensus 291 CD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 291 CDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hcccccCccccchhhhhhccCC
Confidence 9999999999999988887654
No 117
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=0.034 Score=52.17 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=100.6
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-------------
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------------- 143 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------------- 143 (207)
..+...|+.+|.+.+|.|+..+...++..-+ +....+-.+|...|. .+.|.++..+|...++..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~-~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~ 87 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADS-SGKGFLNRQGFYAALRLVAQAQSGRELSAKK 87 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhcccccccc-ccCCccccccccccchHhhhhhcccCcCccc
Confidence 6678899999999999999999999887664 677888899999998 888999999998866541
Q ss_pred -----------------------------------------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHH
Q 028539 144 -----------------------------------------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVL 182 (207)
Q Consensus 144 -----------------------------------------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~ 182 (207)
.+...+|..+... +|.++.+..+-+|..-+ ++...+
T Consensus 88 ~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l 164 (847)
T KOG0998|consen 88 VLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVL 164 (847)
T ss_pred cccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhh
Confidence 1455668888766 78999999888887655 777788
Q ss_pred HHHHHHHcCCCCCCCCccchhhhc
Q 028539 183 QLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 183 ~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
..++...|.+ .+|.+++.+|.
T Consensus 165 ~~iw~l~d~d---~~g~Ld~~ef~ 185 (847)
T KOG0998|consen 165 GRIWELSDID---KDGNLDRDEFA 185 (847)
T ss_pred cccccccccc---ccCCCChhhhh
Confidence 8999999999 99999999884
No 118
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.71 E-value=0.02 Score=36.45 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=39.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCC----CCCCccchhhhcC
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSG----SRKLGLSFDSFVE 207 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~----~~~g~I~~~eF~~ 207 (207)
++++.+|+.+ .++.++|+.+||++.|. .+.++.++++|..-.+ ...+.++|..|++
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4688999999 77789999999998864 3335777777654311 0237799999874
No 119
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.61 E-value=0.48 Score=44.19 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=74.6
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCCC-----cCHHHHHHHHHHH---HHHHHHHhhhCCCCC
Q 028539 88 RDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNP-HDSLR-----IGPKEFADLWSCL---GQWRAIFERYDRDRS 158 (207)
Q Consensus 88 ~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~-~~~g~-----I~~~eF~~~~~~l---~~~~~~F~~~D~d~~ 158 (207)
.+..|+|-...+.+++.+- -.+..|..-+..+..| +.+.. .+++.|..++..+ .++..+|..+-.+..
T Consensus 159 vn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~k 235 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKKK 235 (1189)
T ss_pred ccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCCC
Confidence 3556666665555555432 1123333333333221 22233 4455666666654 689999999988888
Q ss_pred CcccHHHHHHHHHH------cC----CCCCHHHHHHHHHHHcCCCC-CCCCccchhhhc
Q 028539 159 GKIDLMELRDALYS------IG----YAVPPSVLQLLMDKYDNRSG-SRKLGLSFDSFV 206 (207)
Q Consensus 159 G~I~~~e~~~~l~~------~g----~~~~~~~~~~l~~~~d~~~~-~~~g~I~~~eF~ 206 (207)
-+++.++|..+|.. ++ ..+....+..|+.++..+.. ..+|+|+-+.|+
T Consensus 236 pylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ 294 (1189)
T KOG1265|consen 236 PYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFV 294 (1189)
T ss_pred ccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhH
Confidence 99999999999984 22 24678899999999987621 246788888876
No 120
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.30 E-value=0.4 Score=36.11 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 114 TIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 114 ~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
.+++-+.-+|+ |+||.|...|-..-+
T Consensus 8 ~LQqHvaFFDr-d~DGiI~P~dTy~GF 33 (174)
T PF05042_consen 8 VLQQHVAFFDR-DKDGIIYPWDTYQGF 33 (174)
T ss_pred HHhhhhceeCC-CCCeeECHHHHHHHH
Confidence 45666777888 888888876654433
No 121
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.15 E-value=0.3 Score=44.63 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHH
Q 028539 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQ 183 (207)
Q Consensus 110 ~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~ 183 (207)
....++..+|...|+ +.++.+++.+-+.+...+ ..++.+|+..|..++++|...+++.+....... . ++.
T Consensus 133 ~~~~wi~~~~~~ad~-~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev~ 208 (746)
T KOG0169|consen 133 RREHWIHSIFQEADK-NKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EVY 208 (746)
T ss_pred hHHHHHHHHHHHHcc-ccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hHH
Confidence 446678889999999 999999999988877654 578888999999999999999999988876532 2 566
Q ss_pred HHHHHHcC
Q 028539 184 LLMDKYDN 191 (207)
Q Consensus 184 ~l~~~~d~ 191 (207)
.++..+-.
T Consensus 209 ~~f~~~s~ 216 (746)
T KOG0169|consen 209 FLFVQYSH 216 (746)
T ss_pred HHHHHHhC
Confidence 66666554
No 122
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=0.14 Score=44.63 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.+.+...|+.+-.|-.|+|+..--+.++.... ++.+|+..||...|.+ +||.|+++|||
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d---~DGALtL~EFc 288 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVD---RDGALTLSEFC 288 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccC---ccccccHHHHH
Confidence 34555677778777788888877777777544 6677788888888887 88888888886
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.63 E-value=0.13 Score=46.17 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=54.7
Q ss_pred ccHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH------HHHHHHHHhhhCCCCCCcccHHHH
Q 028539 94 IDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC------LGQWRAIFERYDRDRSGKIDLMEL 166 (207)
Q Consensus 94 I~~~e~~~~l~~l-g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~------l~~~~~~F~~~D~d~~G~I~~~e~ 166 (207)
|+...|..+++.+ -+..+...+.++|+++|. +.+|.|+|.+|+..+.. ++++.-+|+.+|.+++ .++.+|.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~-s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDD-SMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhccc-CCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3444555555543 223555677889999999 99999999999997765 4789999999999999 8888887
No 124
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.45 E-value=0.29 Score=40.22 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=42.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHH-----cCCCCCHHHH-----------HHHHHHHcCCCCCCCCccchhhhcC
Q 028539 146 WRAIFERYDRDRSGKIDLMELRDALYS-----IGYAVPPSVL-----------QLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~e~~~~l~~-----~g~~~~~~~~-----------~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
-+..|..+|.+++|+++-.||..++.. +...-.++++ +.+++..|.| .+..|+.+||++
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtN---qDRlvtleEFL~ 320 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTN---QDRLVTLEEFLN 320 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccc---hhhhhhHHHHHh
Confidence 456789999999999999999888763 1222222222 2356667888 899999999974
No 125
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.41 E-value=0.26 Score=36.60 Aligned_cols=49 Identities=10% Similarity=0.309 Sum_probs=28.2
Q ss_pred CCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 155 RDRSGKIDLMELRDALYSIGY---AVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 155 ~d~~G~I~~~e~~~~l~~~g~---~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
......|+...|..+|+.++. .++...++.+|.++... ....|+|++|+
T Consensus 13 ~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k---~~~~I~f~~F~ 64 (154)
T PF05517_consen 13 KKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAK---GARKITFEQFL 64 (154)
T ss_dssp TSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-S---S-SEEEHHHHH
T ss_pred CCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcC---CCcccCHHHHH
Confidence 334455677777777776543 46666677777775443 44457777764
No 126
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.24 E-value=0.033 Score=45.87 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=14.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHH
Q 028539 146 WRAIFERYDRDRSGKIDLMELRDALY 171 (207)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~e~~~~l~ 171 (207)
.+.+|+..|.++|-+|+++|++..|.
T Consensus 372 ~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 372 SRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred hhhcchhcccCCCceecHHHHhhhhc
Confidence 44555555666666666666655554
No 127
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.49 E-value=0.32 Score=43.66 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=63.7
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH--HHHHHHHHhhhC
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--LGQWRAIFERYD 154 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~--l~~~~~~F~~~D 154 (207)
--+.++|+++|...+|.|+..+|...|..+...-..+.+..++.+++. +++ .++.++....... ...+..+|..-+
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~-p~~-~~d~e~~~~e~~~~~~~~~~~~l~~~~ 632 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDP-PAD-ELDREEVSLECCPELATEITEVLGSPS 632 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccC-Ccc-cccccccccccChhhhHHHHHHhCCCC
Confidence 346899999999999999999999999988777777888899999998 887 8887777332221 123334443333
Q ss_pred CCCCCcccHHHHHHHHH
Q 028539 155 RDRSGKIDLMELRDALY 171 (207)
Q Consensus 155 ~d~~G~I~~~e~~~~l~ 171 (207)
+|.++..|-++.+.
T Consensus 633 ---~~~~~~~e~~q~~~ 646 (671)
T KOG4347|consen 633 ---DGDSTTKESKQAIA 646 (671)
T ss_pred ---CcchhhhhhHHHHH
Confidence 44445555554444
No 128
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.43 E-value=0.31 Score=40.06 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=20.2
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHH
Q 028539 81 RSFEMVDRDRSGFIDENELQQALS 104 (207)
Q Consensus 81 ~~F~~~D~d~~G~I~~~e~~~~l~ 104 (207)
-.|.++|.|+||.++..||..++.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFt 271 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFT 271 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHH
Confidence 347788899999999999988776
No 129
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.35 E-value=0.25 Score=43.80 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=53.5
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
..+..|..+|.|+.|.+..++++++|++.+..++++.+.+++...+.+ .+|.+...||.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~---~~g~v~l~e~~ 652 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADEN---LNGFVELREFL 652 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---hcceeeHHHHH
Confidence 466789999999999999999999999988889999999999999988 88999988875
No 130
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.08 E-value=0.27 Score=43.81 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=51.5
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
.+++.-.+.+..+|..+|.|+||.++..||..+++......-.+.... ..--. +..|.+++.-|+..|..+
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~--~~t~~-~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYK--DSTVK-NERGWLTLNGFLSQWSLM 378 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccc--cccee-cccceeehhhHHHHHHHH
Confidence 477888899999999999999999999999999997654330000000 00001 456999999999988764
No 131
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.96 E-value=0.45 Score=46.52 Aligned_cols=57 Identities=19% Similarity=0.372 Sum_probs=49.0
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Q 028539 83 FEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (207)
Q Consensus 83 F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~ 141 (207)
|+.+|.|+.|.|+..+|..+++... ..+..++.-++..... +.+..++|++|+.-+.
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~-dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEA-DENDMFDYEDFVDRFH 4119 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhcc-CccccccHHHHHHHhc
Confidence 6788999999999999999998543 4667888888888888 8999999999998653
No 132
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=90.66 E-value=3.7 Score=33.38 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=59.9
Q ss_pred CCCCcccHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-----H----HHHHHHhhhCCCC
Q 028539 89 DRSGFIDENELQQALSSG--YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-----G----QWRAIFERYDRDR 157 (207)
Q Consensus 89 d~~G~I~~~e~~~~l~~l--g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l-----~----~~~~~F~~~D~d~ 157 (207)
.-||.++..|+. +.+.+ .+.++.+..+.+...|.. ......++++|+..+... + -|..+|...=.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~-~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~A-- 142 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFRE-GKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAFA-- 142 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--
Confidence 458999999997 33432 134566664455555555 445568899999877541 1 12444555433
Q ss_pred CCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHHc
Q 028539 158 SGKIDLMELRDALYSI--GYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 158 ~G~I~~~e~~~~l~~~--g~~~~~~~~~~l~~~~d 190 (207)
||.|+..| +++|+.+ ...++..+++.+...+.
T Consensus 143 DG~l~~~E-~~~L~~Ia~~Lgis~~df~~~~~~~~ 176 (267)
T PRK09430 143 DGSLHPNE-RQVLYVIAEELGFSRFQFDQLLRMMQ 176 (267)
T ss_pred cCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 48899988 4444432 12388888888877654
No 133
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=90.48 E-value=2.1 Score=39.36 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=12.6
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcC
Q 028539 147 RAIFERYDRDRSGKIDLMELRDALYSIG 174 (207)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~e~~~~l~~~g 174 (207)
+++|..-=+-+ ..+..+++..+...+.
T Consensus 443 ~R~~nlaiT~R-~~~~~~~V~~Aih~~d 469 (830)
T KOG1923|consen 443 RRLFNLAITRR-VQMKAKEVMAAIHPLD 469 (830)
T ss_pred HHHHHHHHHhh-hcCchHHHHHHhhhcc
Confidence 34444433333 4455555555555443
No 134
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=90.42 E-value=1.5 Score=31.99 Aligned_cols=65 Identities=15% Similarity=0.318 Sum_probs=36.5
Q ss_pred CCCcCHHHHHHHHHHH----HHHHHHHhhhCC-------CCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHHcCC
Q 028539 128 SLRIGPKEFADLWSCL----GQWRAIFERYDR-------DRSGKIDLMELRDALYSI-GYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 128 ~g~I~~~eF~~~~~~l----~~~~~~F~~~D~-------d~~G~I~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~ 192 (207)
-+.|+..||..+-... .+++.+.+.|.. +..+.|+.+-|+.+|+.. ...++++-++.||..|...
T Consensus 5 ~~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eeccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 3567777777766543 244444444422 224589999999999974 4458888888999888653
No 135
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=89.92 E-value=0.6 Score=38.96 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=56.8
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
+.+--..++-=+|..+|.+.|+.|+..||..+- +.-.+.=|+.+|...|. ..++.|+-.||.-++..
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~-~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDT-YKDGSISTNEWCYCFQK 310 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcc-cccCccccchhhhhhcc
Confidence 555667788889999999999999999997754 35667788899999999 99999999999987753
No 136
>PLN02952 phosphoinositide phospholipase C
Probab=89.33 E-value=3.8 Score=37.16 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=57.3
Q ss_pred CCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH--------HHHHHHHhhh------
Q 028539 90 RSGFIDENELQQALSSGYQ--RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL--------GQWRAIFERY------ 153 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~lg~--~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l--------~~~~~~F~~~------ 153 (207)
+.|.++.++|..+.+.+-. .....++..||..+-. + ...|+.++|..++... +.+..+|+.+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-G-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-C-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccc
Confidence 3589999999888886642 3468899999999965 4 3689999999988753 2344444432
Q ss_pred -CCCCCCcccHHHHHHHHHH
Q 028539 154 -DRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 154 -D~d~~G~I~~~e~~~~l~~ 172 (207)
...+...++.+.|..+|..
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccCcCHHHHHHHHcC
Confidence 1122345899999998863
No 137
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=89.01 E-value=0.7 Score=43.28 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHH-----HHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPS-----VLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~-----~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+.+++..|..+|+...|.++.++|+..|..+|+..-++ ++..|+..-|.+ .-|+|+|.+|.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l---~~~qv~~~e~~ 811 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPL---IQGQVQLLEFE 811 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcc---cccceeHHHHH
Confidence 46899999999999999999999999999999887642 233344444444 44788888875
No 138
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=88.85 E-value=2.9 Score=28.39 Aligned_cols=75 Identities=20% Similarity=0.073 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-------HHHHHHHHhhhCCCCCCc
Q 028539 90 RSGFIDENELQQALSSGY--QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDRSGK 160 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~lg--~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-------l~~~~~~F~~~D~d~~G~ 160 (207)
-||.++..|...+-+.+. +.++..+...++..+.. ......++.+|+..+.. ..-+..+|+..-.| |.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~AD--G~ 88 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEA-LEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYAD--GE 88 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CC
Confidence 378999998866655321 35778888888888887 66777899999887653 23345555555444 77
Q ss_pred ccHHHHH
Q 028539 161 IDLMELR 167 (207)
Q Consensus 161 I~~~e~~ 167 (207)
++..|-.
T Consensus 89 ~~~~E~~ 95 (104)
T cd07313 89 LDEYEEH 95 (104)
T ss_pred CCHHHHH
Confidence 7777743
No 139
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=88.64 E-value=0.37 Score=39.87 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=26.5
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Q 028539 83 FEMVDRDRSGFIDENELQQALSSGY-QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (207)
Q Consensus 83 F~~~D~d~~G~I~~~e~~~~l~~lg-~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~ 141 (207)
|..+|+|.++.|+..|++.+-+.+- ..-...=.++++...|- ++|..|++.||+.++.
T Consensus 339 F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDl-NkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 339 FNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDL-NKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhccc-CCCceecHHHHhhhhc
Confidence 5555555555555555333222111 11223333445555555 5555555555555443
No 140
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.58 E-value=5.6 Score=26.71 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhc-------C----CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSG-------Y----QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l-------g----~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
+.++-+|..+ .|.+|.|+...|..+|+.+ | +...+..++..|.... ....|+.++|+.++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~---~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ---LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT---T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC---CCCccCHHHHHHHHHh
Confidence 5678889988 5789999999998888732 1 1124444555554431 2355666666666543
No 141
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.46 E-value=1.9 Score=28.94 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHH-------cCCC----CCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 143 LGQWRAIFERYDRDRSGKIDLMELRDALYS-------IGYA----VPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 143 l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~-------~g~~----~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
.+++|.+|..+ .|.+|.++...|..+|++ +||. -.+..++..|.... ....|+.++|+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~-----~~~~I~~~~Fl 70 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ-----LSPKITENQFL 70 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT-----T-S-B-HHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC-----CCCccCHHHHH
Confidence 35778888888 667788888888888774 2331 14556666666652 34567777775
No 142
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.05 E-value=5.7 Score=28.46 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHcCCC--CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHH-----HHHHHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDR--SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPK-----EFADLWSCLGQWRA 148 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~--~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~-----eF~~~~~~l~~~~~ 148 (207)
+..+.++|+.+..+. +..|+..|+..+|..+ |..... ......+.. .-+.++ +..
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~i------------y~~l~~-~~p~~~~i~~~~v~~a~~L~-----ln~ 101 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSI------------YEFLNK-RLPTLHQIPSRPVDLAVDLL-----LNW 101 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHH------------HHHHHH-HSTTS--HH-----HHHHHH-----HHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHH------------HHHHHH-HCCCCCCCCchhHHHHHHHH-----HHH
Confidence 344556666555332 3557777776666543 222222 222223322 333322 346
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHH
Q 028539 149 IFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 149 ~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
++..||.+++|+|..-.|+-+|..
T Consensus 102 Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 102 LLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHhCCCCCCeeehhHHHHHHHH
Confidence 788999999999999999887754
No 143
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.63 E-value=8.3 Score=31.31 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCCC
Q 028539 3 NYSGSYSSSQSYAPSAPSLPETHNNS 28 (207)
Q Consensus 3 ~~~~~~~~~~~~~~~~p~~~~~~~~~ 28 (207)
+|+.+|.-+--++.|.|+-|..+.+.
T Consensus 191 syp~Py~p~p~~q~p~p~~p~~~~yi 216 (338)
T KOG0917|consen 191 SYPSPYDPSPYHQDPMPSGPYTGIYI 216 (338)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCccee
Confidence 45556655544455555555555554
No 144
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=84.86 E-value=9.1 Score=25.38 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=41.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
-..||..||...-+..++.++.+..+.++..+.. ..-...+-+|=..++..+
T Consensus 12 ln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~-k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 12 LNNITAKELLKYSKQYNISITKKQAEQIANILRG-KNINIFNEQERKKLLKEI 63 (85)
T ss_pred HhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999887 666666666665555543
No 145
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=81.31 E-value=11 Score=26.38 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~ 138 (207)
++...+.++-.-++..++.++++.+|+..|.......+..++..+.. .+.+|.+.
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G------KdI~ELIa 58 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG------KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC------CCHHHHHH
Confidence 34556667777777889999999999999999999999999988865 55666554
No 146
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=81.09 E-value=6 Score=37.09 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCCCCCChhH-HHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCCCcCHHHHHHHHHHHH--
Q 028539 69 SAFPPGTHPD-VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNP-HDSLRIGPKEFADLWSCLG-- 144 (207)
Q Consensus 69 ~~l~~~~~~~-l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~-~~~g~I~~~eF~~~~~~l~-- 144 (207)
.+.++-++.. +++.+..+|...-..|+..+++.+|....+.++.... +...+..+ -..+.++|++|..++..+.
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kf--l~e~~ted~~~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKF--LKEKFTEDGARKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred cCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHH--HHHHHhHhhhccccccHHHHHHHHHHHhhc
Confidence 3445555544 5667778887777789999999999877666554322 22222220 2467899999999887641
Q ss_pred -------HHHHHHhh--hCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHHHcCCCC--CCCCccchhhhc
Q 028539 145 -------QWRAIFER--YDRDRSGKIDLMELRDALYSIGYA---VPPSVLQLLMDKYDNRSG--SRKLGLSFDSFV 206 (207)
Q Consensus 145 -------~~~~~F~~--~D~d~~G~I~~~e~~~~l~~~g~~---~~~~~~~~l~~~~d~~~~--~~~g~I~~~eF~ 206 (207)
.....|-. -+...--.|+..||.++|..-... .....++.++..|-.|.- ...-.+.++||+
T Consensus 213 ~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv 288 (1267)
T KOG1264|consen 213 QQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFV 288 (1267)
T ss_pred cchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHH
Confidence 11111111 122223479999999999743211 222356667776654410 033457788886
No 147
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=79.93 E-value=3.1 Score=36.40 Aligned_cols=112 Identities=13% Similarity=0.256 Sum_probs=61.7
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC------CCCCCCcCHHHHHHHHHHHHHHHHHH
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN------PHDSLRIGPKEFADLWSCLGQWRAIF 150 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~------~~~~g~I~~~eF~~~~~~l~~~~~~F 150 (207)
..+..++ .+-....+.-+.+||...++...-. .+..+...+.. ......+.++.-++++. -+-
T Consensus 289 ~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~----L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~a------L~~ 357 (445)
T PF13608_consen 289 DEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPE----LLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVA------LLM 357 (445)
T ss_pred HHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCch----HHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHH------HHH
Confidence 3455666 5555667888888888888855322 22222222211 01234455555554444 223
Q ss_pred hhhCCCCCCccc--HHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchh
Q 028539 151 ERYDRDRSGKID--LMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFD 203 (207)
Q Consensus 151 ~~~D~d~~G~I~--~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~ 203 (207)
-.||.+++..|- +..|+.++.+++..+...-++++.+.++. ++..|+|+
T Consensus 358 M~FD~ERSD~VyKiLnKlK~v~st~~~~V~hQSLDdi~~~~ee----K~lTIDFe 408 (445)
T PF13608_consen 358 MMFDAERSDCVYKILNKLKGVFSTMGQDVRHQSLDDIEDIFEE----KNLTIDFE 408 (445)
T ss_pred HHhCchhhHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhh----hcceeEEE
Confidence 346777777654 45777888877766555455566555543 44555553
No 148
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=79.82 E-value=2.6 Score=32.20 Aligned_cols=53 Identities=9% Similarity=0.221 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028539 136 FADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (207)
Q Consensus 136 F~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~ 188 (207)
|+.++.+.+.++++|..||.++--..+.+++.++|...|+....-.|+.++.+
T Consensus 47 W~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~N 99 (188)
T COG2818 47 WLTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINN 99 (188)
T ss_pred HHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHH
Confidence 45566778899999999999999999999999999988876665555555544
No 149
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=79.50 E-value=3.2 Score=26.39 Aligned_cols=29 Identities=17% Similarity=0.436 Sum_probs=24.4
Q ss_pred ChhHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 028539 75 THPDVIRSFEMVDRDRSGFIDENELQQALS 104 (207)
Q Consensus 75 ~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~ 104 (207)
..+++.+.|+.+ .++.+.||..||++.|.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 457889999999 67889999999999765
No 150
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=78.88 E-value=13 Score=23.04 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 028539 133 PKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMD 187 (207)
Q Consensus 133 ~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~ 187 (207)
+..|+..+..-..++..++.. .+.+++..+.+..|+.++.+++.....
T Consensus 4 l~~Fl~~~~~d~~L~~~l~~~-------~~~e~~~~lA~~~Gf~ft~~el~~~~~ 51 (64)
T TIGR03798 4 LKAFLEKVKTDPDLREKLKAA-------EDPEDRVAIAKEAGFEFTGEDLKEAGE 51 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHHc-------CCHHHHHHHHHHcCCCCCHHHHHHHHh
Confidence 456777776666677766654 458999999999999999999987533
No 151
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=78.57 E-value=7.6 Score=25.73 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
.||.+||..+.+..+..++.+.++.++..+-.
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRG 45 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 46777777777777777777776666666643
No 152
>PLN02222 phosphoinositide phospholipase C 2
Probab=77.96 E-value=5.3 Score=36.17 Aligned_cols=58 Identities=7% Similarity=0.066 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH--------HHHHHHHhhhCC-CCCCcccHHHHHHHHH
Q 028539 111 SLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL--------GQWRAIFERYDR-DRSGKIDLMELRDALY 171 (207)
Q Consensus 111 ~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l--------~~~~~~F~~~D~-d~~G~I~~~e~~~~l~ 171 (207)
...++..||..+.. ++.++.++|..++... +....+|+.+.. .+.+.++.+.|..+|.
T Consensus 23 ~~~ei~~if~~~~~---~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 23 APREIKTIFEKYSE---NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CcHHHHHHHHHhcC---CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 34455555555532 2355656555555432 223334443321 1234455555555554
No 153
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=77.65 E-value=17 Score=25.36 Aligned_cols=55 Identities=5% Similarity=0.020 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHH
Q 028539 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (207)
Q Consensus 79 l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~ 139 (207)
+...+.++...++..++.++++.+|+..|.......+..+++.+.. .+.+|.+..
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G------Kdi~eLIa~ 57 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG------KDVEELIAA 57 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC------CCHHHHHHH
Confidence 3455666677778899999999999999999999999988888764 456666553
No 154
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=77.17 E-value=5.3 Score=27.18 Aligned_cols=72 Identities=18% Similarity=0.079 Sum_probs=38.3
Q ss_pred CCCcccHHHHHHHHHhcC--CC---CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-------HHHHHHHHhhhCCCC
Q 028539 90 RSGFIDENELQQALSSGY--QR---FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDR 157 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~lg--~~---~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-------l~~~~~~F~~~D~d~ 157 (207)
-||.++..|...+.+.+. .. .....+..++..... .- ...+..++...+.. ..-+..++.....|
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~aD- 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLA-LL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAAD- 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHH-HH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc-
Confidence 368899998887777553 22 233444444444332 10 03445566554443 23344555555444
Q ss_pred CCcccHHH
Q 028539 158 SGKIDLME 165 (207)
Q Consensus 158 ~G~I~~~e 165 (207)
|.++..|
T Consensus 92 -G~~~~~E 98 (111)
T cd07176 92 -GEVDPEE 98 (111)
T ss_pred -CCCCHHH
Confidence 6777766
No 155
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.58 E-value=15 Score=26.41 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 143 LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 143 l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
+.+++.+|..-+.| +..++...++.++.-|+..+|+.=+.
T Consensus 90 LkKLRiAf~lK~~D---------m~~I~~~~~f~vS~pElsAlfR~~~h 129 (155)
T COG4807 90 LKKLRIAFSLKTDD---------MLAILTEQQFRVSMPELSALFRAPDH 129 (155)
T ss_pred HHhHhHhhhcccch---------HHHHHhccCcccccHHHHHHHhCCCc
Confidence 35778888765443 77778877888888888888876554
No 156
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=76.54 E-value=8.2 Score=24.61 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHH----cCCCCCHHHHHHHHHHH
Q 028539 132 GPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYS----IGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 132 ~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~----~g~~~~~~~~~~l~~~~ 189 (207)
+-.+...+-..+..+..+...++..-.--|-..+++.++.. .|...+++.++.||++|
T Consensus 11 ~~Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 11 NARQRQLLEQALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34444445555666777777766443344666788888875 47788899999998765
No 157
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=75.32 E-value=22 Score=23.91 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=40.0
Q ss_pred CCCcccHHHHHHH---HHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH---------HHHHHHHHhhhCCCC
Q 028539 90 RSGFIDENELQQA---LSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC---------LGQWRAIFERYDRDR 157 (207)
Q Consensus 90 ~~G~I~~~e~~~~---l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~---------l~~~~~~F~~~D~d~ 157 (207)
-||.++..|...+ +..+ .........+...+.. ......++.+|...+.. +.-+..+|...-.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A-- 86 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQM--GLDAEARREAIRLFNE-GKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA-- 86 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHH-hCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--
Confidence 3788998887554 4443 2334444555555543 33333677887776543 2334445555433
Q ss_pred CCcccHHHH
Q 028539 158 SGKIDLMEL 166 (207)
Q Consensus 158 ~G~I~~~e~ 166 (207)
||.|+..|-
T Consensus 87 DG~~~~~E~ 95 (106)
T cd07316 87 DGELSEAER 95 (106)
T ss_pred cCCCCHHHH
Confidence 377777763
No 158
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=74.64 E-value=10 Score=21.99 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHH
Q 028539 134 KEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVL 182 (207)
Q Consensus 134 ~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~ 182 (207)
..|+..+..-..++..++.. -+.+++..+.+..|+.++.+++
T Consensus 7 ~~Fl~~~~~d~~l~~~l~~~-------~~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 7 KAFLEKVKSDPELREQLKAC-------QNPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred HHHHHHHhcCHHHHHHHHhc-------CCHHHHHHHHHHcCCCCCHHHh
Confidence 34444444445566666553 2788999999999999998776
No 159
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=74.53 E-value=24 Score=23.91 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCC
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDR 155 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~ 155 (207)
.+.|...|..+-. .+...+.+.+.+.|| ++..+|..+-...- + +.+. ++..|..|+. +
T Consensus 3 ~~~l~~~f~~i~~----~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~-----~--~~eq---~~qmL~~W~~------~ 60 (96)
T cd08315 3 QETLRRSFDHFIK----EVPFDSWNRLMRQLG--LSENEIDVAKANER-----V--TREQ---LYQMLLTWVN------K 60 (96)
T ss_pred HhHHHHHHHHHHH----HCCHHHHHHHHHHcC--CCHHHHHHHHHHCC-----C--CHHH---HHHHHHHHHH------h
Confidence 3557777776643 567788999999997 67777777654321 1 2222 2222323332 2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 028539 156 DRSGKIDLMELRDALYSIGYAVPPSVLQLLMD 187 (207)
Q Consensus 156 d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~ 187 (207)
.|. .-+...|.++|+.++.....+.|+..+.
T Consensus 61 ~G~-~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 61 TGR-KASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred hCC-CcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 222 3468899999999999888888876543
No 160
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=73.97 E-value=3.4 Score=29.57 Aligned_cols=73 Identities=18% Similarity=0.067 Sum_probs=45.8
Q ss_pred CCCcccHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-------HHHHHHHHhhhCCCCCCc
Q 028539 90 RSGFIDENELQQALSSG--YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDRSGK 160 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~l--g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-------l~~~~~~F~~~D~d~~G~ 160 (207)
-||.|+..|...+...+ ...++......++..++. .....+++.+|+..+.. ..-+..++.....| |.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~ 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADE-LKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GE 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCH-HHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-HHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CC
Confidence 57999999988776654 334556667777777765 44456778888765533 34566667666655 66
Q ss_pred ccHHH
Q 028539 161 IDLME 165 (207)
Q Consensus 161 I~~~e 165 (207)
|+..|
T Consensus 113 ~~~~E 117 (140)
T PF05099_consen 113 ISPEE 117 (140)
T ss_dssp -SCCH
T ss_pred CCHHH
Confidence 66665
No 161
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=73.71 E-value=51 Score=29.29 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=64.1
Q ss_pred HHHHHHcCC----CCCcccHHHHHHHHHhc------------C----------------CCCC-HHHHHHHHHHhcCCCC
Q 028539 81 RSFEMVDRD----RSGFIDENELQQALSSG------------Y----------------QRFS-LSTIRLLMFLFRNPHD 127 (207)
Q Consensus 81 ~~F~~~D~d----~~G~I~~~e~~~~l~~l------------g----------------~~~~-~~~~~~l~~~~d~~~~ 127 (207)
++|..++.. ++|+|+..++..+.... + ..++ .+.+++|++.-| .-
T Consensus 303 ~lf~AigsqgdGkcgGKI~AkDls~fs~~H~qva~y~~~qA~~Y~qnYipSD~~~~~~psvMT~nDA~RELYrYSd--yL 380 (624)
T PF05819_consen 303 ALFYAIGSQGDGKCGGKIKAKDLSKFSSHHPQVAEYAEQQAESYTQNYIPSDSKDNAQPSVMTENDAMRELYRYSD--YL 380 (624)
T ss_pred HHHHHhccCCCCCcCCeechhhHHHHHhcChHHHHHHHHHhhhhhhccCCCCCCCCCCCcccchhHHHHHHHHhhh--cc
Confidence 457777754 45789999887764411 0 0122 456677777766 56
Q ss_pred CCCcCHHHHHHHHHH-----------------HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 028539 128 SLRIGPKEFADLWSC-----------------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLL 185 (207)
Q Consensus 128 ~g~I~~~eF~~~~~~-----------------l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l 185 (207)
.+.|+.+.|..++.- ...-...|+.+-.+.++.|..++|.+...+ ...++..|+..|
T Consensus 381 PK~L~~~~f~~IVdG~s~tgKcPPQViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~ass-~m~LT~~ElkTL 454 (624)
T PF05819_consen 381 PKNLSLEDFKQIVDGDSKTGKCPPQVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVASS-SMHLTAPELKTL 454 (624)
T ss_pred ccccCHHHHHhHhcCccccCCCCHHHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHHHh-hcccChHHHHHH
Confidence 788999999988742 122334445553455689999999887664 234666665543
No 162
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=73.55 E-value=9.5 Score=26.04 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=7.8
Q ss_pred CcccHHHHHHHHHH
Q 028539 159 GKIDLMELRDALYS 172 (207)
Q Consensus 159 G~I~~~e~~~~l~~ 172 (207)
..|+.+||++++..
T Consensus 79 ~~I~k~eL~efW~q 92 (100)
T PF08414_consen 79 DSITKDELKEFWEQ 92 (100)
T ss_dssp SEE-HHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 45666666666654
No 163
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=73.43 E-value=27 Score=25.65 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 135 EFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 135 eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
||+.++.. ++=+..+.+..-+|..+.+..+|..+|+.---+++..++..+
T Consensus 46 EFI~liSs-----EAneic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~~ 95 (156)
T KOG0871|consen 46 EFINLISS-----EANEICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLENC 95 (156)
T ss_pred HHHHHHHH-----HHHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 56666553 345566777778999999999999998763344444444443
No 164
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.32 E-value=48 Score=26.86 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=47.7
Q ss_pred hhHHHHHHH-HHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 76 HPDVIRSFE-MVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 76 ~~~l~~~F~-~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
...+.++|. ..|.+.+..|..+-+..+++.+|+.+..-.+-.+--.++. ..-+.++.+||+.-+..
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A-~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGA-ATMCEFSREEFLKGMTA 129 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhcc-chhhhhhHHHHHHHHHH
Confidence 455666776 4455555799999999999999987765444444445555 67788999999996644
No 165
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=73.09 E-value=5.5 Score=24.81 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=31.9
Q ss_pred hhhCCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHHHcC
Q 028539 151 ERYDRDRSGKIDLMELRDALYS----------IGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 151 ~~~D~d~~G~I~~~e~~~~l~~----------~g~~~~~~~~~~l~~~~d~ 191 (207)
+.||+..+.+|++++++++.+. .|+.++...+-+++-.-..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~e~ 60 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEEES 60 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHHHh
Confidence 4679999999999999999984 2677888877777665543
No 166
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.92 E-value=4.3 Score=34.41 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=34.4
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLL 185 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l 185 (207)
+++|++|+.+|..++|+|+..-|+.++...+..+++.+...+
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l 350 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVML 350 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHH
Confidence 489999999999999999999999999988755555443333
No 167
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.82 E-value=6.4 Score=39.82 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=51.2
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcC----CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGY----QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg----~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
.|++.+.+++.++|..+|.+..|.|...++..+++.+. +....+. +.+--.+-. ..+++|+|.+-+..+.+
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~-~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPM-VSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCc-CCCCeeehhhHHHHHHH
Confidence 58999999999999999999999999999999999763 2222222 111112222 45788888887776653
No 168
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=72.41 E-value=15 Score=25.51 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH
Q 028539 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (207)
Q Consensus 79 l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~ 138 (207)
+...|.+++.-++...+..+++.+|...|.....+.++.++..+.- + +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~G-----K-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKG-----K-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcC-----C-CHHHHHH
Confidence 4566788888888899999999999999999999999999998753 2 5666554
No 169
>PLN02228 Phosphoinositide phospholipase C
Probab=72.21 E-value=10 Score=34.21 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=21.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHHHc
Q 028539 145 QWRAIFERYDRDRSGKIDLMELRDALYSI-GY-AVPPSVLQLLMDKYD 190 (207)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~-g~-~~~~~~~~~l~~~~d 190 (207)
++..+|..+-.+ +.|+.++|.++|... ++ ..+.+.+..++..+.
T Consensus 25 ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~ 70 (567)
T PLN02228 25 SIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVK 70 (567)
T ss_pred HHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhc
Confidence 444555554322 346666666655543 22 233444555555554
No 170
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=72.12 E-value=18 Score=25.35 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 149 ~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
+|-+...-++..++.+++..+|...|..+....+..+++.+..
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G 50 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG 50 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC
Confidence 3444445566779999999999999999999999999988864
No 171
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=71.36 E-value=18 Score=33.63 Aligned_cols=8 Identities=25% Similarity=0.318 Sum_probs=3.3
Q ss_pred cCHHHHHH
Q 028539 131 IGPKEFAD 138 (207)
Q Consensus 131 I~~~eF~~ 138 (207)
+.+++.+.
T Consensus 456 ~~~~~V~~ 463 (830)
T KOG1923|consen 456 MKAKEVMA 463 (830)
T ss_pred CchHHHHH
Confidence 44444433
No 172
>PLN02230 phosphoinositide phospholipase C 4
Probab=71.27 E-value=11 Score=34.39 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=37.9
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC--C-CCCHHHHHHHHHHHcCCC----CCCCCccchhhhc
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIG--Y-AVPPSVLQLLMDKYDNRS----GSRKLGLSFDSFV 206 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g--~-~~~~~~~~~l~~~~d~~~----~~~~g~I~~~eF~ 206 (207)
.+++.+|..+-.++ +.++.++|.++|.... + ..+.++++.++..+...- ....+.++++.|.
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~ 97 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFN 97 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHH
Confidence 46778888884333 6888888888888643 2 346666777776543210 0023457777764
No 173
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=70.03 E-value=21 Score=24.75 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=37.7
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 148 AIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 148 ~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
..|-+++.-++-..+..+++.+|.++|..+..+.+..+++.+..
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~G 48 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKG 48 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcC
Confidence 45666777777789999999999999999999999999998864
No 174
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=69.83 E-value=32 Score=23.39 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
.|...+++.+.+.+| +++..|..+-..... + ..++...+ |..|.... ...| +...|...|+.
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~~-d-----~~Eq~~qm---L~~W~~~~-----G~~a--~~~~Li~aLr~ 78 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQ-D-----TAEQKVQL---LRAWYQSH-----GKTG--AYRTLIKTLRK 78 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCCC-C-----hHHHHHHH---HHHHHHHh-----CCCc--hHHHHHHHHHH
Confidence 567788888888886 677777776553322 1 13443332 22332221 1122 45888999999
Q ss_pred cCCCCCHHHHHHHHHH
Q 028539 173 IGYAVPPSVLQLLMDK 188 (207)
Q Consensus 173 ~g~~~~~~~~~~l~~~ 188 (207)
++.....+.|+.++..
T Consensus 79 ~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 79 AKLCTKADKIQDIIEA 94 (97)
T ss_pred ccchhHHHHHHHHHHh
Confidence 9988888888877654
No 175
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=69.00 E-value=5.6 Score=30.56 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028539 136 FADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (207)
Q Consensus 136 F~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~ 188 (207)
|..++.+.+.++.+|..||.+.--..+.+++.++|..-+.-.....|+.++.+
T Consensus 46 W~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~N 98 (187)
T PRK10353 46 WITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGN 98 (187)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHH
Confidence 44566777899999999999988888999999999876655555556555553
No 176
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=68.78 E-value=36 Score=23.53 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHH
Q 028539 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (207)
Q Consensus 94 I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~ 139 (207)
||.++++.+|+..|..+....+..++..+.. .+.+|.+.-
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG------k~V~eli~~ 56 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG------KNIDEVISK 56 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC------CCHHHHHHH
Confidence 9999999999999999999999999988764 466776653
No 177
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.59 E-value=7.4 Score=29.67 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028539 136 FADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (207)
Q Consensus 136 F~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~ 188 (207)
|..++.+.+.++++|.-||.+.--..+.+++.+++..-+.-...-.|+.++.+
T Consensus 45 W~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~N 97 (179)
T TIGR00624 45 WITVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIAN 97 (179)
T ss_pred HHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHH
Confidence 45566778899999999999988889999999999877765566556666654
No 178
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=68.46 E-value=20 Score=20.48 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhC-C-CCCCcccHHHHHHHHHH
Q 028539 143 LGQWRAIFERYD-R-DRSGKIDLMELRDALYS 172 (207)
Q Consensus 143 l~~~~~~F~~~D-~-d~~G~I~~~e~~~~l~~ 172 (207)
+..+..+|..|- + .....|+..||+.+|..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456778888883 2 33568999999999874
No 179
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=68.28 E-value=33 Score=22.89 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=20.9
Q ss_pred cccHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 93 FIDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~-~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
.|+..+|.++++.+... ...+-+. ++...-. ... .++-.+...++..
T Consensus 4 ~m~~~~f~~~~~~lk~~~fd~dkl~-~l~~~~~-~~~-~~T~~Qv~~il~~ 51 (95)
T PF14771_consen 4 PMSDNDFEQFLEQLKKESFDSDKLK-VLEAAAK-TNN-CFTCAQVKQILSL 51 (95)
T ss_pred CCCHHHHHHHHHHHHcCCCcHHHHH-HHHHHHh-cCC-ceeHHHHHHHHHH
Confidence 34555555555554332 3333332 2222222 211 4666666665543
No 180
>PLN02228 Phosphoinositide phospholipase C
Probab=68.02 E-value=33 Score=31.09 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCC----CCCCcCHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ--RFSLSTIRLLMFLFRNPH----DSLRIGPKEFADLWS 141 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~--~~~~~~~~~l~~~~d~~~----~~g~I~~~eF~~~~~ 141 (207)
..++.++|..+-.+ +.|+.++|..+|+.... ..+...+..++..+.. . ..+.++++.|...+.
T Consensus 23 ~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 23 PVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKH-HNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred cHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhcc-chhhcccCccCHHHHHHHhc
Confidence 46788888887643 58999999999997642 3566778899988864 3 246799999988663
No 181
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=67.72 E-value=28 Score=21.97 Aligned_cols=44 Identities=2% Similarity=0.018 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH
Q 028539 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (207)
Q Consensus 94 I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~ 138 (207)
|+.+++..+++..++.+++.++..+++.-+. .+-..++-..+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~-~~y~~c~D~~L~~ 57 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDE-KGYKECSDQLLRN 57 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCC-ccccccChHHHHH
Confidence 3466888888888888999988888887665 4433344333333
No 182
>PHA02335 hypothetical protein
Probab=67.45 E-value=38 Score=23.39 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=34.9
Q ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCC--cccHHHHHHHHHHcCC
Q 028539 126 HDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSG--KIDLMELRDALYSIGY 175 (207)
Q Consensus 126 ~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G--~I~~~e~~~~l~~~g~ 175 (207)
++...|+++||..-+.+..-+++.|++|...++- .+-...+..+...+++
T Consensus 20 ~np~sVt~ddf~~DlkRi~yIkrllKRy~~~~~~k~hlIlNhlI~l~NvF~e 71 (118)
T PHA02335 20 NNPQSVTYDDFEEDLKRFKYIKRLFKRYLNTGELKTHLILNHIIILYNVFGE 71 (118)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhhh
Confidence 3456788888888888888888888888776554 3444555555555554
No 183
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=66.87 E-value=41 Score=23.58 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHH
Q 028539 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFA 137 (207)
Q Consensus 80 ~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~ 137 (207)
...+.+.-.-++..++.++++.+|+..|.......+..++..+.. .+.+|.+
T Consensus 4 vaAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g------K~i~eLI 55 (113)
T PLN00138 4 VAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG------KDITELI 55 (113)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC------CCHHHHH
Confidence 344555555667789999999999999999999999888888864 4455554
No 184
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=65.48 E-value=41 Score=23.36 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~ 138 (207)
.|+.+.++.+|+..|..+....++.++..+.. ++.+|.+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg------~~idE~i~ 55 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG------VDIDEVIK 55 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC------CCHHHHHH
Confidence 99999999999999999999999999988864 57777665
No 185
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=65.39 E-value=20 Score=31.55 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-------CCCCCCcCHHHHHHHH
Q 028539 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN-------PHDSLRIGPKEFADLW 140 (207)
Q Consensus 81 ~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~-------~~~~g~I~~~eF~~~~ 140 (207)
-+|..+-...+++|....|..+|+++|+.-+..-++.+|..+.. ......++-+.|..++
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 45777776668999999999999999998777666666655432 0124668888887765
No 186
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.35 E-value=5.6 Score=33.75 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHH-hcCCCCCCCcCHHHHHHH
Q 028539 74 GTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL-FRNPHDSLRIGPKEFADL 139 (207)
Q Consensus 74 ~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~-~d~~~~~g~I~~~eF~~~ 139 (207)
+.-.+++++|+..|+.+.|.|+-.-++.++..++...++...-.+++. +|. +.-+.|-..+|+.-
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~p-E~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDP-ESLGIILLEDFLGE 371 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccCh-hhcceEEecccccc
Confidence 335679999999999999999999999999998855665544444443 444 66666666665543
No 187
>PF13551 HTH_29: Winged helix-turn helix
Probab=65.34 E-value=24 Score=23.75 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=40.7
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHH-H-hcCCCCCHHHHHHHHHHh
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-S-SGYQRFSLSTIRLLMFLF 122 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l-~-~lg~~~~~~~~~~l~~~~ 122 (207)
+++++...+.+++.....++....+..++...| + ..+..++...+..++...
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 788888888888886655544578999999865 4 568899999999988753
No 188
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=64.75 E-value=31 Score=24.02 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 149 ~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
+|-+....++..|+.+++..+|+..|..+....+..+++.+..
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G 48 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG 48 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC
Confidence 3444445667789999999999999999998888888888754
No 189
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=64.64 E-value=14 Score=25.60 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=35.7
Q ss_pred HhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc---CC-CCCHHHHHHHHHHHcCC
Q 028539 121 LFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSI---GY-AVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 121 ~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~---g~-~~~~~~~~~l~~~~d~~ 192 (207)
++|. .....|++++...++..= .-|+..|..-..-|+..=|.+++.+. |. -++.+.+..|++.++..
T Consensus 11 LYDT-~tS~YITLedi~~lV~~g----~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~ 81 (107)
T TIGR01848 11 LYDT-ETSSYVTLEDIRDLVREG----REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGS 81 (107)
T ss_pred ccCC-CccceeeHHHHHHHHHCC----CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChh
Confidence 3455 555666666655555422 33555555544456655555555431 22 25666666666666543
No 190
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=64.57 E-value=39 Score=22.42 Aligned_cols=63 Identities=11% Similarity=-0.074 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q 028539 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDALYSI 173 (207)
Q Consensus 109 ~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 173 (207)
.+++.+...++...-. .+..|.+.+|...+... .+...+=..+|...++.|+.=||--+.+-+
T Consensus 3 rITK~eA~~FW~~~Fg--~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 3 RITKAEAAEFWKTSFG--KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp --SSHHHHHHHHHHHT--T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eeccHHHHHHHHHHCC--CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3455666666665442 34557777777766542 122333344577777777777776665543
No 191
>PLN02222 phosphoinositide phospholipase C 2
Probab=64.03 E-value=31 Score=31.34 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ--RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~--~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~ 141 (207)
..++.++|..+-. ++.|+.++|..+|..... ..+.+.+..|+..+..-...+.++++.|...+.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 3578888988754 479999999999997643 356788888888763202356799999998764
No 192
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=63.35 E-value=22 Score=20.85 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=36.3
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLF 122 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~ 122 (207)
.++.++...|..+|.. +...+..++..+...+| ++...|..+|..-
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~nr 51 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQNR 51 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 3677778889999987 45889999999888885 7778888877643
No 193
>PLN02230 phosphoinositide phospholipase C 4
Probab=63.26 E-value=44 Score=30.52 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHHhcCC------CCCCCcCHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ---RFSLSTIRLLMFLFRNP------HDSLRIGPKEFADLWS 141 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~---~~~~~~~~~l~~~~d~~------~~~g~I~~~eF~~~~~ 141 (207)
..+++.+|..+-.++ +.|+.++|..+|..... ..+.+.+..++..+... -..+.++++.|...+.
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 468899999986444 89999999999997652 34666777777654220 1245699999998653
No 194
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=62.44 E-value=33 Score=29.85 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~-lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~ 141 (207)
.+.++.+-+.+|.|.+|-|+.+|-..+|+. +.+.-+...-.+ .|- ..|..|+.++....|.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~---~fH--~dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSE---KFH--GDDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhh---hcc--CCccceeHHHHHHHHH
Confidence 345777888999999999999998888883 433322222222 222 2356677777766654
No 195
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.31 E-value=48 Score=29.03 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 94 I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
|...++..+++...-.+..++.+++...+.. |..++++|+.-+..
T Consensus 294 LGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~----g~FtL~Df~~Ql~~ 338 (451)
T COG0541 294 LGMGDVLSLIEKAEEVVDEEEAEKLAEKLKK----GKFTLEDFLEQLEQ 338 (451)
T ss_pred cCcccHHHHHHHHHHhhhHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 3344445555544434445555555555554 55777777665544
No 196
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=62.26 E-value=62 Score=31.02 Aligned_cols=72 Identities=10% Similarity=0.186 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH----------------HHHHHHHhhhCCC----
Q 028539 97 NELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL----------------GQWRAIFERYDRD---- 156 (207)
Q Consensus 97 ~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l----------------~~~~~~F~~~D~d---- 156 (207)
+.|..++..+. ...+|+.||..+.. +....++.++|+.++..- ..+..+.+.|..+
T Consensus 208 e~f~~~l~klc---pR~eie~iF~ki~~-~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a 283 (1189)
T KOG1265|consen 208 EKFYRLLNKLC---PRPEIEEIFRKISG-KKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNA 283 (1189)
T ss_pred HHHHHHHHhcC---CchhHHHHHHHhcc-CCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhh
Confidence 34455565553 34689999999988 777899999999988652 4677777777444
Q ss_pred CCCcccHHHHHHHHHH
Q 028539 157 RSGKIDLMELRDALYS 172 (207)
Q Consensus 157 ~~G~I~~~e~~~~l~~ 172 (207)
..|.|+.+-|.+.|..
T Consensus 284 ~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 284 EKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hccccchhhhHHHhhC
Confidence 4689999999988874
No 197
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=62.03 E-value=61 Score=24.08 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 135 EFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 135 eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
||+.++... +=+.+-.++.-+|+.+++..++.++|+.--.+-+...+.+|
T Consensus 66 EfISFvT~E-----AsekC~~EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 66 EFISFVTGE-----ASEKCQREKRKTINGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HHHHHHhhH-----HHHHHHHHhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 777777643 23333445566899999999999999765566666666665
No 198
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=61.07 E-value=21 Score=21.94 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=27.0
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 159 GKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 159 G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
-.+|.+||.+++..++..++.+++-.|+...-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35889999999999999999888888877664
No 199
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=60.88 E-value=53 Score=22.76 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~ 138 (207)
.||.+.++.+|+..|.......+..++..+.. ++.++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G------kdIeElI~ 55 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED------VNIEEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC------CCHHHHHH
Confidence 89999999999999999999999999888764 56666664
No 200
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=60.87 E-value=6 Score=27.81 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 110 ~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
++++.++.||..+-- +..|+|.|.||+.-+...
T Consensus 4 LtDeQFdrLW~e~Pv-n~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPV-NAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B--TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcC-CccCCEeHHHHHHHcccc
Confidence 678889999999888 899999999999877643
No 201
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=60.70 E-value=13 Score=22.98 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=22.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 028539 160 KIDLMELRDALYSIGYAVPPSVLQLLMD 187 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~~~~~~~~~l~~ 187 (207)
.|+.++|..+|+...-.++.++|+...+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~ 56 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEE 56 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4899999999999988899988876543
No 202
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.28 E-value=12 Score=34.54 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=44.6
Q ss_pred cCHHHHHHHHH--HHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc---C-----CCCCHHHHHHHHHHHcCCCCCCCCcc
Q 028539 131 IGPKEFADLWS--CLGQWRAIFERYDRDRSGKIDLMELRDALYSI---G-----YAVPPSVLQLLMDKYDNRSGSRKLGL 200 (207)
Q Consensus 131 I~~~eF~~~~~--~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~---g-----~~~~~~~~~~l~~~~d~~~~~~~g~I 200 (207)
|+++||. ... ....++..|.++|. .+|.++.++++.+++.. + .....+....++...+.+ ..+.+
T Consensus 4 ~~~~~~~-~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~y~ 78 (646)
T KOG0039|consen 4 ISFQELK-ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD---HKGYI 78 (646)
T ss_pred cchhhhc-ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc---cccee
Confidence 7788877 222 24678888888888 78999999988888742 1 223444455666666655 44555
Q ss_pred chhh
Q 028539 201 SFDS 204 (207)
Q Consensus 201 ~~~e 204 (207)
.+++
T Consensus 79 ~~~~ 82 (646)
T KOG0039|consen 79 TNED 82 (646)
T ss_pred eecc
Confidence 4443
No 203
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=59.70 E-value=23 Score=22.54 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=9.6
Q ss_pred CCCcccHHHHHHHHHH
Q 028539 157 RSGKIDLMELRDALYS 172 (207)
Q Consensus 157 ~~G~I~~~e~~~~l~~ 172 (207)
+.++|+.+||.+.++.
T Consensus 38 k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 38 KKKKISREEFVRKLRQ 53 (70)
T ss_pred HHCCCCHHHHHHHHHH
Confidence 4456666666666664
No 204
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.33 E-value=85 Score=24.61 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=55.7
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHH----hhhCCCCCCcccHH
Q 028539 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIF----ERYDRDRSGKIDLM 164 (207)
Q Consensus 89 d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F----~~~D~d~~G~I~~~ 164 (207)
..||.|+..|-..++..+...-...+.+.++..-- ..-|+.++........+.-.++| -.+|.+ .+....
T Consensus 122 kaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~El----~~PlD~~~ia~~a~~ee~a~ElY~ASrl~id~d--~r~Er~ 195 (225)
T COG2979 122 KADGHIDEKERARIMQKLQESGVDPEAQAFLEQEL----EQPLDPDEIAAAARNEEQALELYLASRLAIDDD--SRMERS 195 (225)
T ss_pred hhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHH----hCCCCHHHHHHHhcCHHHHHHHHHHHHHhcCch--hHHHHH
Confidence 46899999999999866554444556666665533 25689999888776644333332 233443 444433
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 165 ELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 165 e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
=|..+-..++ +.+..++.|-...
T Consensus 196 YL~~La~~L~--L~dalvd~lE~qv 218 (225)
T COG2979 196 YLNALAGALG--LPDALVDHLERQV 218 (225)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHH
Confidence 3334444455 6776666655443
No 205
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=59.12 E-value=19 Score=30.32 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=5.7
Q ss_pred ccHHHHHHHHH
Q 028539 94 IDENELQQALS 104 (207)
Q Consensus 94 I~~~e~~~~l~ 104 (207)
|+..||.+++.
T Consensus 357 lSeAEFEdiM~ 367 (498)
T KOG4849|consen 357 LSEAEFEDIMT 367 (498)
T ss_pred chHHHHHHHHh
Confidence 44555555554
No 206
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=59.03 E-value=4.6 Score=25.75 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhcC
Q 028539 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFVE 207 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~~ 207 (207)
.|+...|..+|. ..++.+.++.+...|+.- +.+.|+.++|++
T Consensus 8 ~~~F~~L~~~l~---~~l~~~~~~~l~~~Y~~~---k~~kIsR~~fvr 49 (70)
T PF12174_consen 8 WMPFPMLFSALS---KHLPPSKMDLLQKHYEEF---KKKKISREEFVR 49 (70)
T ss_pred cccHHHHHHHHH---HHCCHHHHHHHHHHHHHH---HHCCCCHHHHHH
Confidence 455444444444 446777777777777655 778888888874
No 207
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=58.57 E-value=76 Score=23.80 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=29.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
.++..+++.+-......|+.++|.+.|- +|..+++++++..+..+-
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~i 130 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKYI 130 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHHH
Confidence 4677778777655555799999887773 678899999998877764
No 208
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=57.94 E-value=42 Score=20.61 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 028539 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~ 124 (207)
+..+|.+||...|..|+-.++..++..||..+-.
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~ 40 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQVHG 40 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 3467888888888888878888888777776543
No 209
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=57.85 E-value=18 Score=22.63 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=32.4
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCC
Q 028539 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHD 127 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~ 127 (207)
.++-++..++...|..-|..++.+.++..++.++. ++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~-~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMER-DG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHH-CC
Confidence 45689999999999988999999999999999987 54
No 210
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=57.69 E-value=22 Score=26.30 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHcCCCC----C-cccHHHHHHHHHhcC----CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRS----G-FIDENELQQALSSGY----QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~----G-~I~~~e~~~~l~~lg----~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+..+.+.|+.|-.-++ | .|+...+..+++..+ -.++.-++...|..+.. ..-..|+|++|...+..|
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg-~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKG-KKARTITFEEFKKALEEL 86 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccc-cccccccHHHHHHHHHHH
Confidence 4556677776665443 3 566666777777543 23444555566666665 566789999997766543
No 211
>PLN02223 phosphoinositide phospholipase C
Probab=57.44 E-value=27 Score=31.34 Aligned_cols=45 Identities=4% Similarity=-0.173 Sum_probs=26.6
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHH---HHc-CC-CCCHHHHHHHHHHHc
Q 028539 145 QWRAIFERYDRDRSGKIDLMELRDAL---YSI-GY-AVPPSVLQLLMDKYD 190 (207)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~e~~~~l---~~~-g~-~~~~~~~~~l~~~~d 190 (207)
.++.+|..+ .++.|.++.+.|+++| ... |+ ..+.++++.|+..+-
T Consensus 17 ~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~ 66 (537)
T PLN02223 17 LILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELK 66 (537)
T ss_pred HHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 456666666 3455677777777766 332 32 355666666666543
No 212
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=56.98 E-value=15 Score=17.47 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=10.3
Q ss_pred cCCCCCcccHHHHHHH
Q 028539 87 DRDRSGFIDENELQQA 102 (207)
Q Consensus 87 D~d~~G~I~~~e~~~~ 102 (207)
|.|+||.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677788877776443
No 213
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=56.83 E-value=9.3 Score=33.08 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=5.9
Q ss_pred hHHHHHHHHHcC
Q 028539 77 PDVIRSFEMVDR 88 (207)
Q Consensus 77 ~~l~~~F~~~D~ 88 (207)
...-.+|..+..
T Consensus 262 ~~~~AlFaqlNq 273 (480)
T KOG2675|consen 262 GGRGALFAQLNQ 273 (480)
T ss_pred ccHHHHHHHHhc
Confidence 334455665543
No 214
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=56.11 E-value=9.4 Score=25.79 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=27.2
Q ss_pred CCCCcCHHHHHHHHHHH--------HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 127 DSLRIGPKEFADLWSCL--------GQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 127 ~~g~I~~~eF~~~~~~l--------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
.||.|+-.|-..+-..+ .....+++.+........+..+|.+.++.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 36778877755543321 34555555555556666777777666654
No 215
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=55.96 E-value=53 Score=23.03 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 155 RDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 155 ~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
..++..++.++++.+|...|..+....+..+++.+..
T Consensus 12 l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g 48 (113)
T PLN00138 12 LGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG 48 (113)
T ss_pred hcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC
Confidence 4556679999999999999998888888888888854
No 216
>PHA02105 hypothetical protein
Probab=55.87 E-value=20 Score=21.79 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHc---CCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 160 KIDLMELRDALYSI---GYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 160 ~I~~~e~~~~l~~~---g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
+++.+||+.++..- .+.+..+.+..+-..|..-.- +--.++|+||-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi-~yvyls~~e~~ 52 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQI-KYVYLSYEEFN 52 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccce-EEEEEeHHHhc
Confidence 57888999888753 346777778888877776410 23356888773
No 217
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=55.64 E-value=7.8 Score=29.56 Aligned_cols=54 Identities=11% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 136 FADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 136 F~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
|..++.+.+.++.+|.-||.+.--..+.+++.+++..-+.-.....|+.++.+.
T Consensus 41 W~~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA 94 (179)
T PF03352_consen 41 WSTILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNA 94 (179)
T ss_dssp HHHHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 344666778999999999998888889999999998776656666666666554
No 218
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=54.66 E-value=2.1e+02 Score=27.75 Aligned_cols=124 Identities=8% Similarity=0.054 Sum_probs=73.5
Q ss_pred CCCCCCChhHHHHHHHHHcCC------------------------CC----CcccHHHHHHHHHh--------cCCCCCH
Q 028539 69 SAFPPGTHPDVIRSFEMVDRD------------------------RS----GFIDENELQQALSS--------GYQRFSL 112 (207)
Q Consensus 69 ~~l~~~~~~~l~~~F~~~D~d------------------------~~----G~I~~~e~~~~l~~--------lg~~~~~ 112 (207)
+.|+++....|.+.|..+-+. ++ -.||...|..+++- |.-..+.
T Consensus 715 P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~ 794 (915)
T PTZ00111 715 PKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTP 794 (915)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccH
Confidence 447777777777766554431 11 25889999888872 2334566
Q ss_pred HHHHHHHHHhcC-------CCCCCCcCHHHHHH-----HHHHHHHHHHHHhhh-----CCCCCCcccHHHHHHHHHH---
Q 028539 113 STIRLLMFLFRN-------PHDSLRIGPKEFAD-----LWSCLGQWRAIFERY-----DRDRSGKIDLMELRDALYS--- 172 (207)
Q Consensus 113 ~~~~~l~~~~d~-------~~~~g~I~~~eF~~-----~~~~l~~~~~~F~~~-----D~d~~G~I~~~e~~~~l~~--- 172 (207)
+.++..++++.. +...|.|+++.... -...+..+..+++.+ ..+..+.+..+|+.+.+..
T Consensus 795 ~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 874 (915)
T PTZ00111 795 ADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQLNQMYEQVLSVLTRSSNQDSNKSLDLNEVLSLCHKTFK 874 (915)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHHHHHHHHHHHHHHHHHHHhhhccccCCceeHHHHHHHHHhhcc
Confidence 666655554431 12478888765432 111223333333222 1234467999999988742
Q ss_pred ----cCCCCCHHHHHHHHHHHcCC
Q 028539 173 ----IGYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 173 ----~g~~~~~~~~~~l~~~~d~~ 192 (207)
-...+++++++++++.+...
T Consensus 875 ~~~~~~~~i~~~~~~~~l~~L~~~ 898 (915)
T PTZ00111 875 DNRDHKDGEIYKLISEVLNKMVQE 898 (915)
T ss_pred ccchhccCCCHHHHHHHHHHHHhC
Confidence 23458999999999999754
No 219
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=54.61 E-value=90 Score=29.35 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=70.5
Q ss_pred hhHHHHHHH-HHcCCCCCc---ccHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-------
Q 028539 76 HPDVIRSFE-MVDRDRSGF---IDENELQQALSSGYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL------- 143 (207)
Q Consensus 76 ~~~l~~~F~-~~D~d~~G~---I~~~e~~~~l~~lg~~-~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l------- 143 (207)
...+.++|+ +.|-++-.+ =+...|+.+-+.+... ++...+.++|...+.-.+...++..+.+.++..+
T Consensus 378 hp~~tel~q~lad~nnvKfsaYRtAmKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~ 457 (966)
T KOG4286|consen 378 HPKMTELYQSLADLNNVKFSAYRTAMKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQE 457 (966)
T ss_pred chHHHHHHHHHHHhcCeeehhHHHHHHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHH
Confidence 445566665 334443222 2233344443444332 4556666777766651235556666666654321
Q ss_pred ------------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCC
Q 028539 144 ------------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 144 ------------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~ 192 (207)
..+..++.+||..++|+|..-+|+-.+..+.-...++....||+.....
T Consensus 458 ~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~ 518 (966)
T KOG4286|consen 458 HGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASS 518 (966)
T ss_pred cccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCc
Confidence 2467788999999999999999987766554445566677888887665
No 220
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=54.33 E-value=70 Score=22.09 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 161 IDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 161 I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
|+.+++..+|...|..++.+.+..+++.+..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG 47 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG 47 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC
Confidence 9999999999999999999999999988754
No 221
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=54.20 E-value=26 Score=20.64 Aligned_cols=45 Identities=7% Similarity=0.012 Sum_probs=34.1
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 028539 70 AFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121 (207)
Q Consensus 70 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~ 121 (207)
.++.+++..|..+|.. +..++..+...+...+| ++...|..+|..
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHHH
Confidence 3667778888888884 56888888888888884 677788777753
No 222
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.64 E-value=29 Score=29.93 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~ 139 (207)
...+.++|.-+.. -+|+|+-..-+..+-.. .+.+..+-++|.+.|- +.+|.++-+||.-.
T Consensus 443 k~~yde~fy~l~p-~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~-d~dg~ld~eefala 502 (532)
T KOG1954|consen 443 KPTYDEIFYTLSP-VNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADI-DKDGMLDDEEFALA 502 (532)
T ss_pred CcchHhhhhcccc-cCceeccchhHHHHHhc--cCchhHHHhhhhhhcC-CcccCcCHHHHHHH
Confidence 3456677877665 47888877776665433 5778888889998888 88888888888643
No 223
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=53.62 E-value=29 Score=21.66 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=29.8
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Q 028539 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFR 123 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d 123 (207)
+--|+.+.++.++...|..+++..++.+++...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 568999999999999999999999999988764
No 224
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=53.23 E-value=29 Score=25.28 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=23.7
Q ss_pred CCcccHHHHHHHHHh-cCCCCCHHHHHHHHHHhcC
Q 028539 91 SGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~-lg~~~~~~~~~~l~~~~d~ 124 (207)
.+.|+.+.|+.+|+. |..+++.+.++.||..|.+
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 458999999999985 6778888899999988876
No 225
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=53.08 E-value=59 Score=22.33 Aligned_cols=43 Identities=9% Similarity=-0.024 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH
Q 028539 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~ 138 (207)
..-.||.+++..+|+..|.......+..+.+.+.. .+.+|++.
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g------k~i~elIa 56 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALEG------KDIKDLLS 56 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC------CCHHHHhh
Confidence 45689999999999999999888888777777654 45566553
No 226
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=53.02 E-value=65 Score=21.38 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=32.1
Q ss_pred CcCHHHHHHHH--HH---HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 028539 130 RIGPKEFADLW--SC---LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLM 186 (207)
Q Consensus 130 ~I~~~eF~~~~--~~---l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~ 186 (207)
.|++++++.+= .. -..-..+.+.+ +=|+....+|...|..+| ++.+++++.+
T Consensus 30 ~it~~dL~~~GL~g~~~s~~rR~~l~~~L---~iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIELGLIGGPDSKERREKLGEYL---GIGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHCCCCCCccHHHHHHHHHHHH---CCCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 47777777631 11 11222223333 347888888888888877 7788887765
No 227
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=52.99 E-value=1.1e+02 Score=23.96 Aligned_cols=83 Identities=13% Similarity=0.010 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCC-CCCCc-CHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcC
Q 028539 97 NELQQALSSGYQRFSLSTIRLLMFLFRNPH-DSLRI-GPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIG 174 (207)
Q Consensus 97 ~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~-~~g~I-~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g 174 (207)
.+|..++..+|+... ... + ....+ +..+|..-+.. ++.+++......+.|.|+..|+...+....
T Consensus 61 ~~f~~~~~~lGvdp~----------~s~-~~~s~~l~~~~~f~~ELa~--qi~e~c~~~~~~~GGii~L~dl~~~~nr~R 127 (223)
T PF04157_consen 61 SQFQSMCASLGVDPL----------ASS-KFWSESLKGSGDFYYELAV--QIAEVCLATRSKNGGIISLSDLYCRYNRAR 127 (223)
T ss_dssp HHHHHHHHHHT--CH----------CCT-TCCCCCCSCHHHHHHHHHH--HHHHHHHHHCCTTTSEEEHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCcc----------cch-hhhhhccccchhHHHHHHH--HHHHHHHHHHhcCCCEEEHHHHHHHHHHhc
Confidence 467777777776531 000 0 01233 56666553321 223333333344457888888888887643
Q ss_pred ---CCCCHHHHHHHHHHHcCC
Q 028539 175 ---YAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 175 ---~~~~~~~~~~l~~~~d~~ 192 (207)
..++++++...++.+..-
T Consensus 128 ~g~~lISp~Di~~A~~~l~~l 148 (223)
T PF04157_consen 128 GGSELISPEDILRACKLLEVL 148 (223)
T ss_dssp TTSST--HHHHHHHHHHHCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHc
Confidence 357888888888887654
No 228
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=52.94 E-value=23 Score=28.77 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=66.6
Q ss_pred CCChhHHHHHHHHHcCC--CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Q 028539 73 PGTHPDVIRSFEMVDRD--RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIF 150 (207)
Q Consensus 73 ~~~~~~l~~~F~~~D~d--~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F 150 (207)
......+..++..+..+ ....++.+|.+..-.-|..-+....++.++.-+-. .+--..+..+|...+..+ -|
T Consensus 60 ~pTy~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i~~T~vmk~~~~fL~~-k~~~~~~~~~Fk~~L~~i-----WF 133 (265)
T PF09412_consen 60 KPTYAAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAIMETKVMKLAHQFLVS-KGLAPSDEAEFKKQLKNI-----WF 133 (265)
T ss_dssp TSTHHHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHHTTSHHHHHHHHHHHH-TTSS-SSHHHHHHHHHHH-----HT
T ss_pred CCHHHHHHHHHhccccccCCcccCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHh-----CC
Confidence 44566777888766654 34577777665443333223566677777766665 555668889999877643 57
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcCCCCCH--HHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 151 ERYDRDRSGKIDLMELRDALYSIGYAVPP--SVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 151 ~~~D~d~~G~I~~~e~~~~l~~~g~~~~~--~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
..+.+.+ |.++-.-|.+++. |+.-.. .=+..+++-+-.. +.|.|+|..|+
T Consensus 134 ~~Y~R~~-~~~dSSGFEHVFv--GE~k~~~V~G~HNWi~fy~~E---k~g~~dY~Gy~ 185 (265)
T PF09412_consen 134 GLYSRGS-GGLDSSGFEHVFV--GEIKGGEVSGFHNWIQFYLQE---KSGNVDYKGYI 185 (265)
T ss_dssp S-B-SST-TS--B-HHHHHTT--S-SSTTS------HHHHHHHH---HTTSEEEEEE-
T ss_pred ccccCCC-CCCCCcccceeee--eeecCCeEeeeEHHHHHHHHH---hcCCceEEEEE
Confidence 7776654 4477777888775 443221 2245666666655 67788887664
No 229
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=52.85 E-value=31 Score=22.08 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCCCCcC------HHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 028539 113 STIRLLMFLFRNPHDSLRIG------PKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALY 171 (207)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~I~------~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~ 171 (207)
+.+.+++...-. +..-+|+ ..+++.++.....+|.+...-+.+.++.|+.++|.+++-
T Consensus 3 ~li~rll~~~f~-~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~p 66 (72)
T PF09415_consen 3 ELIARLLHEHFK-DDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILP 66 (72)
T ss_dssp HHHHHHHCTTSS-STT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCH
T ss_pred HHHHHHHHHHhc-CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 345555555444 4444555 345666666555566666555444444599999888764
No 230
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=52.76 E-value=51 Score=24.75 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=39.8
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 028539 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRS 158 (207)
Q Consensus 94 I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~ 158 (207)
|+..+.+.-|+..|++.+.+..+.++..+-. ++.+.| |..| ..++.+...||.|++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~-~~~~~~-y~~~-------~~iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMS-AGEGAM-YTNI-------QGIKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhc-CCCCce-eehH-------HHHHHHHHhcCCCCc
Confidence 5677888889999999888888888877776 665543 3333 235667777877764
No 231
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.99 E-value=93 Score=22.82 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=62.6
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHh--cCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-------HHHHHHHHh
Q 028539 81 RSFEMVDRDRSGFIDENELQQALSS--GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFE 151 (207)
Q Consensus 81 ~~F~~~D~d~~G~I~~~e~~~~l~~--lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-------l~~~~~~F~ 151 (207)
-+|..++. ||.+...|...+... -.+.++...+..++..... -+...|++-.|...+.. ++-+..+|+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~-~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mwe 110 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEE-AGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWE 110 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56777665 577777776544432 2356888899999888877 77788999999987752 345666676
Q ss_pred hhCCCCCCcccHHHHHHHHH---HcCCCCCHHHH
Q 028539 152 RYDRDRSGKIDLMELRDALY---SIGYAVPPSVL 182 (207)
Q Consensus 152 ~~D~d~~G~I~~~e~~~~l~---~~g~~~~~~~~ 182 (207)
..-.| |.++.-|-.-+.+ -+| ++.++.
T Consensus 111 Ia~AD--g~l~e~Ed~vi~RvAeLLg--V~~~d~ 140 (148)
T COG4103 111 IAYAD--GELDESEDHVIWRVAELLG--VSPEDR 140 (148)
T ss_pred HHHcc--ccccHHHHHHHHHHHHHhC--CCHHHH
Confidence 66444 7777766544444 345 444443
No 232
>PRK08181 transposase; Validated
Probab=51.67 E-value=49 Score=26.90 Aligned_cols=48 Identities=15% Similarity=-0.037 Sum_probs=33.0
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
...|+.+++...|+.|.+.--.+.+..+... ...+.++|.||+..+..
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~----a~~~~~~~~e~L~~ll~ 51 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQ----ADKEGWPAARFLAAIAE 51 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHH----HhhcCCCHHHHHHHHHH
Confidence 4678888899999998766434444444433 33467999999997643
No 233
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=51.54 E-value=37 Score=26.05 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLM 119 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~ 119 (207)
.+.++++|..||.++--.++.+++.++|...|+--....|..++
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 44688999999999888999999999999877655554444433
No 234
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=51.49 E-value=28 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 154 DRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 154 D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
..|.+|++..+||.+.+..-+..++.+++.+++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 45667999999999888876777889999998887554
No 235
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.22 E-value=1.1e+02 Score=27.07 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=49.8
Q ss_pred HHHhcCCCCCHHHHHHHHHHhcCCCC---CCCcCHHHHHHHHHH------------------------------------
Q 028539 102 ALSSGYQRFSLSTIRLLMFLFRNPHD---SLRIGPKEFADLWSC------------------------------------ 142 (207)
Q Consensus 102 ~l~~lg~~~~~~~~~~l~~~~d~~~~---~g~I~~~eF~~~~~~------------------------------------ 142 (207)
.|+.-+..++.+.-..||++..- .+ .-.+.|++|+..-..
T Consensus 140 ~m~~e~~~vS~kvq~~L~~LV~~-~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~ 218 (625)
T KOG4422|consen 140 RMRSENVDVSEKVQLELFRLVTY-YNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSIMIAGLC 218 (625)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHh-hcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHHHHHHHH
Confidence 34556788888877777776544 33 334555555543211
Q ss_pred ----HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028539 143 ----LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (207)
Q Consensus 143 ----l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~ 188 (207)
++..+.+++.+ ....|+|..+-|..+.....+.+..+.+.+|+..
T Consensus 219 K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 219 KFSSLERARELYKEH-RAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQ 267 (625)
T ss_pred HHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHh
Confidence 13445555555 3446888888887777665555555555555544
No 236
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=51.15 E-value=52 Score=20.03 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=36.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhh
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF 205 (207)
+-++.+|.... ..+.|...++.+.|. ++...+.++++++.. .|.|.++.+
T Consensus 8 ~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~-----~GlV~~~~y 57 (60)
T PF01325_consen 8 DYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAE-----KGLVEYEPY 57 (60)
T ss_dssp HHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHH-----TTSEEEETT
T ss_pred HHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHH-----CCCEEecCC
Confidence 34566666665 568899888887775 888899999999984 477776654
No 237
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=50.90 E-value=1.3e+02 Score=24.13 Aligned_cols=91 Identities=9% Similarity=-0.033 Sum_probs=54.6
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHH----HHHHhcCCCCCCCcCHHHHHHHHHHHHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRL----LMFLFRNPHDSLRIGPKEFADLWSCLGQW 146 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~----l~~~~d~~~~~g~I~~~eF~~~~~~l~~~ 146 (207)
+++++..++..-+.. ..|...-+.+..+.+|+.++..++.. +-..+.. .-+++++|...+...-.+
T Consensus 19 ~~~~~~~~~~~~~~~------~lI~e~l~lq~A~~~gi~v~~~ev~~~~e~~~~~L~~----~G~~~~~~r~~ir~~i~~ 88 (256)
T TIGR02933 19 LSPDQLQQFDQAWQR------QRHIEQAVVRAADEIGVVIPPSLLEEAPQALAQALDE----QALDAAERRAMLAHHLRL 88 (256)
T ss_pred CCHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHH
Confidence 555655555444433 35555555666678899999998844 4444443 347899998877654445
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 147 RAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
..++...-.. .-.|+-+|++.++..
T Consensus 89 ~~~~~~~~~~-~i~ise~ei~~yy~~ 113 (256)
T TIGR02933 89 EAQLACVCAQ-APQPDDADVEAWYRR 113 (256)
T ss_pred HHHHHHHhcC-CCCCCHHHHHHHHHH
Confidence 5555443222 234677777776653
No 238
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=50.86 E-value=41 Score=21.04 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=30.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 158 ~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
+-.|+.+.++.++..+|.+.++..+..+++.+..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN 62 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 4679999999999999999999999999988753
No 239
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.77 E-value=25 Score=25.67 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=5.7
Q ss_pred cccHHHHHHHHH
Q 028539 160 KIDLMELRDALY 171 (207)
Q Consensus 160 ~I~~~e~~~~l~ 171 (207)
.|+.-.|...|+
T Consensus 82 a~d~y~fts~l~ 93 (148)
T COG4103 82 AIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHHHHHHH
Confidence 444455554444
No 240
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=50.71 E-value=25 Score=22.55 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=9.8
Q ss_pred CCCcCHHHHHHHHHH
Q 028539 128 SLRIGPKEFADLWSC 142 (207)
Q Consensus 128 ~g~I~~~eF~~~~~~ 142 (207)
.|+|.-+||..+...
T Consensus 28 ~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 28 SGKLRGEEINSLLEA 42 (75)
T ss_pred cCcccHHHHHHHHHH
Confidence 567777777666543
No 241
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=50.55 E-value=59 Score=28.38 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcC-CCCCHH
Q 028539 109 RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-------GQWRAIFERYDRDRSGKIDLMELRDALYSIG-YAVPPS 180 (207)
Q Consensus 109 ~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l-------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g-~~~~~~ 180 (207)
.+.-+.|+.|-+.+|. |.+|.|+.+|=-.++... .+-.+.|.. .|..|+.++|.+++...- .+.+.+
T Consensus 64 klg~EAir~iHrqmDD-D~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev~nWT~e 138 (575)
T KOG4403|consen 64 KLGYEAIRDIHRQMDD-DHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESEVHNWTNE 138 (575)
T ss_pred hhhHHHHHHHHHhccc-ccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhhhhcchHH
Confidence 4566788889999998 999999998766555432 223334543 245799999999988643 234444
Q ss_pred H
Q 028539 181 V 181 (207)
Q Consensus 181 ~ 181 (207)
+
T Consensus 139 ~ 139 (575)
T KOG4403|consen 139 R 139 (575)
T ss_pred H
Confidence 3
No 242
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=50.48 E-value=46 Score=22.51 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 112 LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 112 ~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
.+.++..|..+- ..|.+.+|..++..+
T Consensus 3 ~~~l~~~f~~i~-----~~V~~~~Wk~laR~L 29 (96)
T cd08315 3 QETLRRSFDHFI-----KEVPFDSWNRLMRQL 29 (96)
T ss_pred HhHHHHHHHHHH-----HHCCHHHHHHHHHHc
Confidence 345555555553 236667777766654
No 243
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=50.29 E-value=1e+02 Score=22.74 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=60.3
Q ss_pred CCCC-CCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH---H
Q 028539 69 SAFP-PGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGY-QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC---L 143 (207)
Q Consensus 69 ~~l~-~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg-~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~---l 143 (207)
-.++ .++...|....-.+- ..||.++..|...+-..+. ..++.+..+.++.. .. + -.++...|...... .
T Consensus 15 ~~~~~~~~~~~~~~~Ll~iA-kADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~-~~-~--~~L~~~~~~~~~~~~~~~ 89 (150)
T cd07311 15 DQIPTNQDKLAYLKALLVCA-KGDGVISPEERDWAIGYAAARGGDADMVEELKEY-TA-D--EDLEEVDFRSPNIKSSRR 89 (150)
T ss_pred ccCCCcccHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh-Cc-c--ccHHHHHHHHHhcchhHH
Confidence 3444 556555544333332 3589999999865544321 15778888888877 32 2 22333333221111 1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHH---HHHHHcCCCCCHHHHHHHHHHH
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELR---DALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~---~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
..+...+.+.= -||.++..|-. ++...+| ++..++..+++.+
T Consensus 90 ~ll~~~l~vA~--ADG~l~~~E~~lL~~iA~~LG--is~~~~~~l~~~~ 134 (150)
T cd07311 90 ALLYDAIQVCA--ADGELSPGEVAAVRKAASLLG--ISEDEVQKLEEIY 134 (150)
T ss_pred HHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 22233443332 34888888732 3333455 7888888877665
No 244
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=49.59 E-value=1.1e+02 Score=25.54 Aligned_cols=56 Identities=7% Similarity=0.061 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 80 IRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 80 ~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
+++|..+.. .+-.+-.=|+..++-.+...+...+-...+..+.. ..|.|++=+..+
T Consensus 77 rkvWd~VkA-~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYea----EKieY~~smkay 132 (410)
T KOG4715|consen 77 RKVWDQVKA-SNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEA----EKIEYNESMKAY 132 (410)
T ss_pred hhhhhhhhc-cCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 455554443 23345555666777666666666666666555544 446666554433
No 245
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.57 E-value=29 Score=29.44 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=31.0
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHH-HHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 92 GFIDENELQQALSSGYQRFSLSTIR-LLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 92 G~I~~~e~~~~l~~lg~~~~~~~~~-~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
..++.+||+..|.. +.. +++.|. +|.+.-|. --.-|+-|.||+..+..+
T Consensus 6 ~~~~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~s-ILPlRL~FNeFi~tma~I 55 (379)
T PF11593_consen 6 PNLKLEELEEKLAS-NDN-SKDSVMDKISEAQDS-ILPLRLQFNEFIQTMANI 55 (379)
T ss_pred CCCcHHHHHHHHhc-CCc-hHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 45677888887773 323 444444 44444444 456778888998888765
No 246
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=49.52 E-value=53 Score=22.48 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=32.6
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHH
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN--PHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~--~~~~g~I~~~eF~~~~~~l 143 (207)
..+++.|..+-. +|.|...+|..++ |..-+++...+||..+-. --....|+-+|...+|..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 345555666555 6777777777665 334556666666655432 0124557777766666543
No 247
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=49.10 E-value=1.2e+02 Score=23.31 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=51.7
Q ss_pred CCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHH----HHHHHHhhhCCCCCCcccH
Q 028539 89 DRSGFIDENELQQALSSGYQ-RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG----QWRAIFERYDRDRSGKIDL 163 (207)
Q Consensus 89 d~~G~I~~~e~~~~l~~lg~-~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~----~~~~~F~~~D~d~~G~I~~ 163 (207)
..||.|+.+|-..++..+.- ....++-..+...+. .-++.+++...+..-+ .+.-..-.+|.| .....
T Consensus 91 kADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~-----~P~d~~~la~~v~~~e~A~evY~aS~laid~d--~~~Er 163 (188)
T PF04391_consen 91 KADGHIDEEERQRIEGALQELGLDAEERAWLQAELA-----APLDPDALAAAVTDPEQAAEVYLASLLAIDVD--TFAER 163 (188)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHh-----CCCCHHHHHHhCCCHHHHHHHHHHHHHHhCCC--CHHHH
Confidence 46899999999998776543 244444444444444 4578888877663322 233333345554 33333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 028539 164 MELRDALYSIGYAVPPSVLQLLMDK 188 (207)
Q Consensus 164 ~e~~~~l~~~g~~~~~~~~~~l~~~ 188 (207)
.=|..+-+.++ +++..+..|-+.
T Consensus 164 ~YL~~LA~aL~--L~~~lv~~le~~ 186 (188)
T PF04391_consen 164 AYLDELAQALG--LDPDLVAQLEQQ 186 (188)
T ss_pred HHHHHHHHHhC--cCHHHHHHHHHH
Confidence 33333333445 778777776543
No 248
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=48.94 E-value=84 Score=21.91 Aligned_cols=18 Identities=33% Similarity=0.217 Sum_probs=9.2
Q ss_pred CCCCCcccHHHHHHHHHH
Q 028539 155 RDRSGKIDLMELRDALYS 172 (207)
Q Consensus 155 ~d~~G~I~~~e~~~~l~~ 172 (207)
.-++|.|+...+..+|+.
T Consensus 80 ~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 80 DYREGKIPLSVPLTLLKH 97 (117)
T ss_pred HHHcCCccHHHHHHHHHH
Confidence 334455555555555543
No 249
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=48.24 E-value=35 Score=26.02 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=25.8
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 155 RDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 155 ~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
.|.+|++..++|.+.++.-+..++.+++.+++..-++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDK 64 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCC
Confidence 4566888888888877654556787777777766443
No 250
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=48.18 E-value=1.1e+02 Score=22.44 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.1
Q ss_pred HHHcCCCCCHHHHHHHH
Q 028539 170 LYSIGYAVPPSVLQLLM 186 (207)
Q Consensus 170 l~~~g~~~~~~~~~~l~ 186 (207)
+..+|..++++|+..++
T Consensus 99 ~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 99 FEKLGITVSDDELQDML 115 (145)
T ss_pred HHHhCCccCHHHHHHHH
Confidence 34578888888888877
No 251
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.86 E-value=33 Score=29.60 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=43.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhhc
Q 028539 145 QWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSFV 206 (207)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF~ 206 (207)
...++|..+-.- +|+|+...-+.-+.. -.++..++-.+++..|.| ++|.++-+||.
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d---~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADID---KDGMLDDEEFA 500 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHHh--ccCchhHHHhhhhhhcCC---cccCcCHHHHH
Confidence 466777777443 688887766655554 348888999999999999 99999999883
No 252
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=47.48 E-value=33 Score=21.38 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCC
Q 028539 157 RSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 157 ~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~ 192 (207)
.++.|+..++.+.|...|+.++++.+...++.++.+
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERD 45 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHC
Confidence 346799999999999889999999999999999865
No 253
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=47.26 E-value=28 Score=22.66 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=19.7
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCC
Q 028539 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 158 ~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~ 192 (207)
.|+||.+|+..+|.... ++.+.++.++..+...
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHHC
Confidence 47788888888777433 7777788887777543
No 254
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=47.01 E-value=36 Score=29.64 Aligned_cols=30 Identities=3% Similarity=0.065 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcCC
Q 028539 163 LMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 163 ~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~ 192 (207)
.+|.+-+...+....++.|+++||.+|..-
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~I 151 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHI 151 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCcc
Confidence 345555555566677888888888888543
No 255
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=47.00 E-value=40 Score=22.40 Aligned_cols=29 Identities=7% Similarity=-0.010 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 161 IDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 161 I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
|+.++++++.+-....+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 56777888777777778887776665554
No 256
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.82 E-value=43 Score=19.36 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=23.5
Q ss_pred CCCccc-HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 157 RSGKID-LMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 157 ~~G~I~-~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
+.|.|+ ..++.+.|...|..++++.++.+++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 357776 445555666778889999988888753
No 257
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=46.30 E-value=1e+02 Score=26.24 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHH
Q 028539 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPK 134 (207)
Q Consensus 94 I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~ 134 (207)
+-.+|+.+-+..+| +.++.++.+++++.. ++ --|||.
T Consensus 319 ~p~ddvidKv~~MG--f~rDqV~a~v~rl~E-~G-Q~vD~N 355 (358)
T PF07223_consen 319 HPYDDVIDKVASMG--FRRDQVRATVRRLTE-NG-QPVDLN 355 (358)
T ss_pred CcHHHHHHHHHHcC--CcHHHHHHHHHHHHh-cC-Cccccc
Confidence 34555555555555 667788888777765 43 445554
No 258
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=46.20 E-value=82 Score=20.56 Aligned_cols=73 Identities=19% Similarity=0.109 Sum_probs=35.0
Q ss_pred CCcccHHHHHHHHHhcCC--CCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-------HHHHHHHHhhhCCCCCCcc
Q 028539 91 SGFIDENELQQALSSGYQ--RFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-------LGQWRAIFERYDRDRSGKI 161 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~lg~--~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-------l~~~~~~F~~~D~d~~G~I 161 (207)
||.|+..|...+.+.+.. .++......+...+.. ..........|..+... ..-++.++.....| |.+
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~aD--G~~ 89 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEE-PLAEAGDLAALAALLKELPDAELREALLAALWEVALAD--GEL 89 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cCC
Confidence 789999988776664321 1234444444444432 11112234444443322 12344444444444 677
Q ss_pred cHHHH
Q 028539 162 DLMEL 166 (207)
Q Consensus 162 ~~~e~ 166 (207)
+..|.
T Consensus 90 ~~~E~ 94 (104)
T cd07177 90 DPEER 94 (104)
T ss_pred CHHHH
Confidence 76663
No 259
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=46.02 E-value=44 Score=22.24 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=23.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
.|+.++++++.+-....+++++++.+...++
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l~ 32 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQLN 32 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4788888888888778888887766665553
No 260
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=45.84 E-value=1.8e+02 Score=25.22 Aligned_cols=81 Identities=14% Similarity=-0.018 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHH---HHHHHHhhhCCCCCC---cccHH
Q 028539 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLG---QWRAIFERYDRDRSG---KIDLM 164 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~---~~~~~F~~~D~d~~G---~I~~~ 164 (207)
...+...+|+++|....-..+--+...|-..+|. ..++.|+--||-.+.+..+ .+.+-|+.+-...-| +|+.+
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDL-tcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTYD 266 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDL-TCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYD 266 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceecc-ccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeHH
Confidence 4567777888888765433344455566666676 6677776555544444333 333334444445555 47788
Q ss_pred HHHHHHHH
Q 028539 165 ELRDALYS 172 (207)
Q Consensus 165 e~~~~l~~ 172 (207)
|++.-|..
T Consensus 267 EVk~RLqk 274 (563)
T KOG1785|consen 267 EVKARLQK 274 (563)
T ss_pred HHHHHHHH
Confidence 88777764
No 261
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=45.44 E-value=81 Score=27.69 Aligned_cols=104 Identities=9% Similarity=-0.021 Sum_probs=54.4
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHH---HHhcCCCCCCCcCHHHHHHHHHHH----
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLM---FLFRNPHDSLRIGPKEFADLWSCL---- 143 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~---~~~d~~~~~g~I~~~eF~~~~~~l---- 143 (207)
+++.+..-...+...+|. +|++... +..+...++. ...+++.+++ ..||. -|.+.=++.|++.+-...
T Consensus 105 ~s~~e~~Ia~~lI~~Ldd--~GYl~~~-le~~~~~l~~-~~~~eve~vl~~iQ~ldP-~GV~Ar~l~EcL~lQL~~~~~~ 179 (444)
T COG1508 105 LSDTERAIATYLIDALDD--EGYLTES-LEEIAELLGS-VDEEEVEKVLARIQSLDP-AGVGARDLRECLLLQLERRPLD 179 (444)
T ss_pred CChHHHHHHHHHHhhcCc--CCCcccC-HHHHHHhccc-ccHHHHHHHHHHHhcCCC-CccccCcHHHHHHHHHHhcCCC
Confidence 333443334444456555 4555544 4444444432 5555665544 55565 888888888887755431
Q ss_pred ----HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 144 ----GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 144 ----~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
..+..-|.. +-..+|..+.+.++ ++.+++.+++...
T Consensus 180 ~~~~~~v~~~l~l--------la~~d~~~i~~~~~--v~~~dl~~~l~~I 219 (444)
T COG1508 180 DPALEIVIDHLEL--------LARRDFTTIARELK--VDEDELKEALLLI 219 (444)
T ss_pred ChhHHHHHHHHHH--------HHhhhHHHHHHHhC--CCHHHHHHHHHHH
Confidence 111222222 23334666666655 6666666666554
No 262
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.38 E-value=47 Score=26.92 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-------HHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHH
Q 028539 108 QRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-------GQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPS 180 (207)
Q Consensus 108 ~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l-------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~ 180 (207)
...+...+..+|..+..|..+..|..+-...++..+ ..+..+++.- ...-+..+++||..-+..++ ..+.+
T Consensus 59 ~~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~-A~~m~~Fsr~ef~~g~~~l~-~dS~d 136 (260)
T KOG3077|consen 59 ARVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLG-AATMCEFSREEFLKGMTALG-CDSID 136 (260)
T ss_pred ccccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhc-cchhhhhhHHHHHHHHHHcC-CCcHH
Confidence 345666666666666542333456655555555443 2344444433 56667778888777676665 23455
Q ss_pred HHHHHHHHHc
Q 028539 181 VLQLLMDKYD 190 (207)
Q Consensus 181 ~~~~l~~~~d 190 (207)
.++..+....
T Consensus 137 ~lq~~l~~l~ 146 (260)
T KOG3077|consen 137 KLQQRLDFLR 146 (260)
T ss_pred HHHHHHHHHH
Confidence 5655555543
No 263
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=44.69 E-value=55 Score=23.30 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=24.1
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHHc
Q 028539 144 GQWRAIFERYDRDRSGKIDLMELRDALYSI-GYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 144 ~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d 190 (207)
.+|..+|++|.. +.|+.+.+..++... |..++...+..+..++-
T Consensus 37 ~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 37 DKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVY 81 (122)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHH
Confidence 355566666632 346666666666544 34566655555555543
No 264
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=44.63 E-value=70 Score=31.24 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=19.8
Q ss_pred CCCCCcCHHHHHHHH--HHHHHHHHHHhhhCC
Q 028539 126 HDSLRIGPKEFADLW--SCLGQWRAIFERYDR 155 (207)
Q Consensus 126 ~~~g~I~~~eF~~~~--~~l~~~~~~F~~~D~ 155 (207)
...++|+|..++... ..|.+...+-..|+.
T Consensus 165 ~~GgKVSFThlI~kAvv~AL~~~P~mNasy~~ 196 (1228)
T PRK12270 165 TRGGKVSFTHLIGYALVQALKAFPNMNRHYAE 196 (1228)
T ss_pred ccCCcccHHHHHHHHHHHHHHhCchhhceeec
Confidence 567999999998743 345555555555553
No 265
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=43.87 E-value=33 Score=22.36 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Q 028539 165 ELRDALYSIGYAVPPSVLQLLMD 187 (207)
Q Consensus 165 e~~~~l~~~g~~~~~~~~~~l~~ 187 (207)
|+..+|+.+|+.++++|..-|-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 66778889999999988765544
No 266
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=43.43 E-value=55 Score=18.92 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=32.9
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFL 121 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~ 121 (207)
++++++..|..+|...- ..+..+...+...+| ++...|..+|..
T Consensus 7 ~~~~~~~~L~~~f~~~~-----~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (56)
T smart00389 7 FTPEQLEELEKEFQKNP-----YPSREEREELAAKLG--LSERQVKVWFQN 50 (56)
T ss_pred CCHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHC--cCHHHHHHhHHH
Confidence 67777888888886422 788888888888885 667777777754
No 267
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=43.39 E-value=65 Score=23.32 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCCcccHHHHHHHHHhcC---------CCCCHHHHHHHHHHhcCCCCCC-CcCHHHHHHH
Q 028539 90 RSGFIDENELQQALSSGY---------QRFSLSTIRLLMFLFRNPHDSL-RIGPKEFADL 139 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~lg---------~~~~~~~~~~l~~~~d~~~~~g-~I~~~eF~~~ 139 (207)
++..|+.+||.++++.-. +.+..++++++...+.. ...+ .++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~-~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEK-APKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHh-ccccCCCCHHHHHHH
Confidence 678999999999998431 36778888888888887 5544 4888876654
No 268
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=43.14 E-value=82 Score=21.64 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=27.5
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 159 GKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 159 G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
-.|+.+++..+|+..|..+....+..+++.+..
T Consensus 16 ~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g 48 (103)
T cd05831 16 IEITADNINALLKAAGVNVEPYWPGLFAKALEG 48 (103)
T ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC
Confidence 579999999999999988888777777777753
No 269
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=42.87 E-value=58 Score=27.42 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=22.0
Q ss_pred CCcCHHHHHHHHHHH------HHHHHHHhhhCCCCCCcccHHHHHHHH
Q 028539 129 LRIGPKEFADLWSCL------GQWRAIFERYDRDRSGKIDLMELRDAL 170 (207)
Q Consensus 129 g~I~~~eF~~~~~~l------~~~~~~F~~~D~d~~G~I~~~e~~~~l 170 (207)
|.|+.+|=+.++... +.+..+++.++ |+.+||..++
T Consensus 301 G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 301 GRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 667777777666552 34555555553 6777776654
No 270
>COG4086 Predicted secreted protein [Function unknown]
Probab=42.38 E-value=1.7e+02 Score=24.00 Aligned_cols=62 Identities=10% Similarity=0.131 Sum_probs=41.2
Q ss_pred ccHHHHHHHHH----hcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-HHHHHHHHhhhCCC
Q 028539 94 IDENELQQALS----SGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-LGQWRAIFERYDRD 156 (207)
Q Consensus 94 I~~~e~~~~l~----~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-l~~~~~~F~~~D~d 156 (207)
.+.+|++++.. .++++++...+..+...+-. -.+-.|+|.....-+.. ...|..+++.++.+
T Consensus 210 ~~~~dirkvv~dv~~~ynvnltd~qvn~i~~~~~~-~~~~n~d~~kv~~~L~qa~d~l~~~~~~~ea~ 276 (299)
T COG4086 210 DDPADIRKVVDDVANNYNVNLTDTQVNQIVNLFLA-MSNLNIDWTKVQGQLKQAKDSLKWFLQRDEAK 276 (299)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hhccCccHHHhhhHHHHHHHHHHHHHHhhhhh
Confidence 46667666554 57888888888888888776 66677877776654443 34566666665433
No 271
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=42.15 E-value=49 Score=28.01 Aligned_cols=99 Identities=10% Similarity=0.125 Sum_probs=53.1
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCCCC----------HHHHHHHHHHhcCCCCC---------CC----------cCH
Q 028539 83 FEMVDRDRSGFIDENELQQALSSGYQRFS----------LSTIRLLMFLFRNPHDS---------LR----------IGP 133 (207)
Q Consensus 83 F~~~D~d~~G~I~~~e~~~~l~~lg~~~~----------~~~~~~l~~~~d~~~~~---------g~----------I~~ 133 (207)
|...+.+..+.++..|...+|..+++... ...+..++..+.. .+. .+ .+.
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~-~G~EGVVlK~~~~~~~~~Ky~t~~~~~ 209 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDK-EGREGVVLKDPDMRVPPLKYTTSYSNC 209 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHH-CCCceEEEeccccccCcceeecCCCCc
Confidence 44444454567888999999998865322 2456666666654 321 11 111
Q ss_pred HHHHHHHHH----------HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 028539 134 KEFADLWSC----------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLM 186 (207)
Q Consensus 134 ~eF~~~~~~----------l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~ 186 (207)
.+....+.. -..+|.+|..+..+ ++.+++++....+|..+-.-.++.+-
T Consensus 210 ~di~~~~~~~~d~~~~~~~~Ri~R~~~~~~E~~----~~~~~~~~~~~~lG~ail~p~~~~i~ 268 (342)
T cd07894 210 SDIRYAFRYPFDLGRDFFFSRIVREGFQSVELG----ESEEELEERALELGEAILEPLVEAIR 268 (342)
T ss_pred HHHHHHhhhccccCchHHHHHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 13567777776555 55667777777777554443344333
No 272
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=42.02 E-value=1.1e+02 Score=23.48 Aligned_cols=48 Identities=31% Similarity=0.448 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHHHc----------CCCCCHHHHHHHHHHHcCC
Q 028539 142 CLGQWRAIFERYDRDRSGKIDLMELRDALYSI----------GYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 142 ~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~----------g~~~~~~~~~~l~~~~d~~ 192 (207)
.|..++.+|..-+ .-.|...+|...|... |..++...+..+++.|++.
T Consensus 101 LL~DIr~vf~~~~---~~~i~T~dLl~~L~~~~e~pW~~~~~g~~Lt~r~La~~L~~ygI~ 158 (184)
T PF12307_consen 101 LLADIREVFEAGG---EDRIPTADLLDALNADEEAPWATWNRGKPLTPRQLAKLLKEYGIR 158 (184)
T ss_pred hHHHHHHHHccCC---CCcccHHHHHHHHHhCCCCchhhcCCCCCCCHHHHHHHHHHCCCC
Confidence 3567778886633 3579999999988853 4568899999999999874
No 273
>PLN02223 phosphoinositide phospholipase C
Probab=41.67 E-value=1.4e+02 Score=26.91 Aligned_cols=64 Identities=5% Similarity=-0.114 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhc---C--CCCCHHHHHHHHHHhcCCCC--------CCCcCHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSG---Y--QRFSLSTIRLLMFLFRNPHD--------SLRIGPKEFADLWS 141 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l---g--~~~~~~~~~~l~~~~d~~~~--------~g~I~~~eF~~~~~ 141 (207)
-..++.+|..+- ++.|.++.+.|.++|.-| . ...+.++++.|+..+.. .. ...++++.|...+.
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKR-RKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHh-hcccchhhhhccccCHHHHHHHhc
Confidence 356888898884 567999999999988432 1 34666777777765543 22 25699999988664
No 274
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=41.45 E-value=53 Score=20.72 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Q 028539 165 ELRDALYSIGYAVPPSVLQLLMDK 188 (207)
Q Consensus 165 e~~~~l~~~g~~~~~~~~~~l~~~ 188 (207)
++.+++...|..++..++..++++
T Consensus 18 ~m~~if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 18 DMIEIFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred HHHHHHHHcCCccCHHHHHHHHCC
Confidence 344444444444444444444444
No 275
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=41.40 E-value=1.2e+02 Score=21.04 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
.|+.+.+..+|+..|..+.+..+..+++.+..
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G 47 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED 47 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC
Confidence 79999999999999999999989998888754
No 276
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=40.78 E-value=1.6e+02 Score=22.36 Aligned_cols=93 Identities=18% Similarity=0.122 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcC----CCCCCC-cCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 028539 97 NELQQALSSGYQRFSLSTIRLLMFLFRN----PHDSLR-IGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALY 171 (207)
Q Consensus 97 ~e~~~~l~~lg~~~~~~~~~~l~~~~d~----~~~~g~-I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~ 171 (207)
+-|+.+|..+.+.-..+.|.+++..|-. .+.+.. .+.+.--.++..+--+. -..+..+...+++.++|.+.++
T Consensus 83 ~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLn--TdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 83 EALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLN--TDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHh--HHhcCcccCCCCCHHHHHHHHh
Confidence 3466666666666666667666666533 011111 23443332222111111 1234455567899999999998
Q ss_pred Hc--CCCCCHHHHHHHHHHHcC
Q 028539 172 SI--GYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 172 ~~--g~~~~~~~~~~l~~~~d~ 191 (207)
.+ +..++++.++.++.....
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~ 182 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKN 182 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHh
Confidence 65 447999999999887654
No 277
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=40.66 E-value=3.2e+02 Score=25.93 Aligned_cols=122 Identities=12% Similarity=0.135 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCCC-CCcccHHHHHHHHHh--------cCC----CCCHHH-HHHHHHHhcCCCCCCCcCHHHHHHHHHH-
Q 028539 78 DVIRSFEMVDRDR-SGFIDENELQQALSS--------GYQ----RFSLST-IRLLMFLFRNPHDSLRIGPKEFADLWSC- 142 (207)
Q Consensus 78 ~l~~~F~~~D~d~-~G~I~~~e~~~~l~~--------lg~----~~~~~~-~~~l~~~~d~~~~~g~I~~~eF~~~~~~- 142 (207)
-+.++|..++..+ +..++..++..+|.. .|. ++.-+. +.-++..||. ..+|.|..-+|...+..
T Consensus 421 l~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~-~R~g~irvls~ki~~i~l 499 (966)
T KOG4286|consen 421 LALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDT-GRTGRIRVLSFKIGIISL 499 (966)
T ss_pred HHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhccc-CCCcceEEeeehhhHHHH
Confidence 4456677777544 456777766665542 221 222222 3557889999 99999998888775543
Q ss_pred -----HHHHHHHHhhhCCCCCCcc------cHHHHHHHHHHcCC-------CCCHHHHHHHHHHHcCCCCCCCCccchhh
Q 028539 143 -----LGQWRAIFERYDRDRSGKI------DLMELRDALYSIGY-------AVPPSVLQLLMDKYDNRSGSRKLGLSFDS 204 (207)
Q Consensus 143 -----l~~~~~~F~~~D~d~~G~I------~~~e~~~~l~~~g~-------~~~~~~~~~l~~~~d~~~~~~~g~I~~~e 204 (207)
.++++.+|+..-.++.-.+ -+.++.++.+.+|+ ++.. -++..|... + ..-.|.+..
T Consensus 500 ck~~leek~~ylF~~vA~~~sq~~q~~l~lLL~dliqipr~lGE~aAfGgsNvep-svrsCF~~v--~---~~pei~~~~ 573 (966)
T KOG4286|consen 500 CKAHLEDKYRYLFKQVASSTSQCDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP-SVRSCFQFV--N---NKPEIEAAL 573 (966)
T ss_pred hcchhHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh-HHHHHHHhc--C---CCCcchHHH
Confidence 3789999999966655443 22344444444443 3333 355555522 1 455677777
Q ss_pred hc
Q 028539 205 FV 206 (207)
Q Consensus 205 F~ 206 (207)
|+
T Consensus 574 f~ 575 (966)
T KOG4286|consen 574 FL 575 (966)
T ss_pred HH
Confidence 75
No 278
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=40.63 E-value=1.2e+02 Score=21.35 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=16.0
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 028539 128 SLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169 (207)
Q Consensus 128 ~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~ 169 (207)
...|+.+.+..++.-...+..-+..+|.++.=-+-.+||.+.
T Consensus 74 ~k~IskD~W~~~l~F~~~~~~dls~Yde~~AWP~liDeFVe~ 115 (117)
T PF03556_consen 74 KKAISKDTWNQFLDFFKTVDEDLSNYDEEGAWPSLIDEFVEW 115 (117)
T ss_dssp -SEEEHHHHHHHHHHHHH-HCCHCC--TTSSS-HHHHHHHHH
T ss_pred CcCcChhHHHHHHHHHHhcCccccCCCCCCCCcHHHHHHHHH
Confidence 344555544444443333333444444443333444444443
No 279
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=40.42 E-value=88 Score=27.75 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=33.6
Q ss_pred CCCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 028539 68 HSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSG 106 (207)
Q Consensus 68 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l 106 (207)
+-.|++-|...|.-+|+..|.++--.|+..+|+.+|..+
T Consensus 119 lL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 119 LLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred HhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 446777777789999999999999999999999999855
No 280
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=40.25 E-value=77 Score=22.56 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=26.8
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHhcC
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~l-g~~~~~~~~~~l~~~~d~ 124 (207)
..|.++|++|.. +.|+.+.+..++... |..++...+.-++..+-.
T Consensus 37 ~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~ 82 (122)
T PF06648_consen 37 DKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYN 82 (122)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHc
Confidence 346666666664 366666666666654 356666666665555543
No 281
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=40.12 E-value=1e+02 Score=21.41 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
-|+-+.++.+|...|..+.+.-+..++..++.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg 47 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG 47 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC
Confidence 79999999999999999999999999988864
No 282
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=40.04 E-value=1.5e+02 Score=21.84 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=39.8
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHH----cCCCCCH
Q 028539 128 SLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYS----IGYAVPP 179 (207)
Q Consensus 128 ~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~----~g~~~~~ 179 (207)
...-..+-|...+..++.+..-....|..+.++||..||+.++-. ++..++-
T Consensus 53 ~~~~~l~gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~ 108 (148)
T PF12486_consen 53 LPAPQLDGWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPL 108 (148)
T ss_pred CCchhhchHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCH
Confidence 344456677778888888999999999998888999999988764 4444553
No 283
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=39.90 E-value=41 Score=20.05 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=14.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 028539 158 SGKIDLMELRDALYSIGYAVPPSVLQLLM 186 (207)
Q Consensus 158 ~G~I~~~e~~~~l~~~g~~~~~~~~~~l~ 186 (207)
+|.|+.+||.+-+...-...+..++..++
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45666666655555443334444444443
No 284
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=39.45 E-value=1.6e+02 Score=21.85 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH-HHHHHHH-HhhhCCCCCCcccHHHHHHHHHHc-----CCCCCHHHHHH
Q 028539 112 LSTIRLLMFLFRNPHDSLRIGPKEFADLWSC-LGQWRAI-FERYDRDRSGKIDLMELRDALYSI-----GYAVPPSVLQL 184 (207)
Q Consensus 112 ~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~-l~~~~~~-F~~~D~d~~G~I~~~e~~~~l~~~-----g~~~~~~~~~~ 184 (207)
+..+..|+..-+. +.++.|++..|..++.. +..|... |-. ....++.++++.+|..+ .+....++-+.
T Consensus 82 ~s~Lehllg~~~~-~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lk----h~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye~ 156 (175)
T PF04876_consen 82 HSFLEHLLGGEDD-STNGLIDIGKFFDILQPKLGDWITKNFLK----HPNRMSKDQIKTLCEQIIEMAKAESSDTEHYEK 156 (175)
T ss_pred HHHHHHHhcCCcC-CcccceeHHHHHHHHHHHhhhHHHHHHHh----ccchhhHHHHHHHHHHHHHHHhccCCchHHHHH
Confidence 3344444444333 44677999998887753 4444333 322 24567888888777643 23345555666
Q ss_pred HHHHH
Q 028539 185 LMDKY 189 (207)
Q Consensus 185 l~~~~ 189 (207)
++.++
T Consensus 157 vwkKm 161 (175)
T PF04876_consen 157 VWKKM 161 (175)
T ss_pred HHHHh
Confidence 66554
No 285
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=39.00 E-value=2.1e+02 Score=23.20 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHH
Q 028539 155 RDRSGKIDLMELRDALYSIGY---AVPPSVLQLLMDKY 189 (207)
Q Consensus 155 ~d~~G~I~~~e~~~~l~~~g~---~~~~~~~~~l~~~~ 189 (207)
.+|-..++.+||+.+|..=|. .++.+++...+..+
T Consensus 214 ~eGv~~Ls~~EL~~Ac~~RGl~~~~~s~~~lr~~L~~W 251 (268)
T PF07766_consen 214 REGVDSLSEEELQDACYERGLRSTGLSEEELREWLKQW 251 (268)
T ss_dssp HH-GGGS-HHHHHHHHHHTT---TT--HHHHHHHHHHH
T ss_pred HhccccCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHH
Confidence 345567999999999997554 46777777666554
No 286
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=38.99 E-value=61 Score=19.05 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=25.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCC
Q 028539 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 158 ~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~ 192 (207)
.|.|+..+|++++. ++...+..+++.||..
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 68999999999985 7888899999999864
No 287
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=38.81 E-value=1.2e+02 Score=20.37 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH-----HHHHHHHhhhCCCCCCcccHHHHHH
Q 028539 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL-----GQWRAIFERYDRDRSGKIDLMELRD 168 (207)
Q Consensus 94 I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l-----~~~~~~F~~~D~d~~G~I~~~e~~~ 168 (207)
....|+...++.....++..-+++|++.... . +|+-+-...+...+ .....+-...+-.+--+|..+++..
T Consensus 4 ~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~-~---Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~l 79 (91)
T COG2036 4 VGLKEIRRYQRSTDLLLPKAPVRRILRKAGA-E---RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKL 79 (91)
T ss_pred chHHHHHhhhhhhhhhcCchHHHHHHHHHhH-H---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHH
Confidence 3445666666666666777777777777654 3 44443333333322 2233333444555667788888888
Q ss_pred HHHHcCC
Q 028539 169 ALYSIGY 175 (207)
Q Consensus 169 ~l~~~g~ 175 (207)
+++..+.
T Consensus 80 a~~~~~~ 86 (91)
T COG2036 80 ALKRLGR 86 (91)
T ss_pred HHHHhcc
Confidence 8887664
No 288
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=38.78 E-value=57 Score=23.76 Aligned_cols=31 Identities=6% Similarity=0.161 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 161 IDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 161 I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
.+.++++.+...+..+++++|++.++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 3455555555545555555555555555543
No 289
>PRK00523 hypothetical protein; Provisional
Probab=38.24 E-value=1.1e+02 Score=19.63 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=35.3
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
.+..|+.+=++ +-.|+.+-+|.++..+|.+.++..+..+++.+..
T Consensus 26 ark~~~k~l~~-NPpine~mir~M~~QMGqKPSekki~Q~m~~mk~ 70 (72)
T PRK00523 26 SKKMFKKQIRE-NPPITENMIRAMYMQMGRKPSESQIKQVMRSVKN 70 (72)
T ss_pred HHHHHHHHHHH-CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 34445555333 5779999999999999999999999999988743
No 290
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=36.89 E-value=55 Score=29.03 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=24.9
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 149 IFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 149 ~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
+|..|-...++.|....|..+|++.|...++--+..+++++
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~m 131 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEM 131 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHH
Confidence 45555444456677777777777777666555555555544
No 291
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=36.89 E-value=71 Score=22.24 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 161 IDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 161 I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
-+.+|++.++-.....+++++++.|+....
T Consensus 79 ~~~dElrai~~~~~~~~~~e~l~~ILd~l~ 108 (112)
T PRK14981 79 ETRDELRAIFAKERYTLSPEELDEILDIVK 108 (112)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 367788888877777788888888777653
No 292
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=36.86 E-value=1.2e+02 Score=22.13 Aligned_cols=31 Identities=3% Similarity=0.014 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 028539 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 94 I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~ 124 (207)
.+.+++..+......+++.++++.++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 5788999988878888999999999999886
No 293
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.43 E-value=1.1e+02 Score=19.40 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=34.7
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
++.|+..=+| +-.|+.+-+|.++..+|-+.++..+.++++.+..
T Consensus 26 rk~~~k~lk~-NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~k 69 (71)
T COG3763 26 RKQMKKQLKD-NPPINEEMIRMMMAQMGQKPSEKKINQVMRSIIK 69 (71)
T ss_pred HHHHHHHHhh-CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4445544333 5679999999999999999999999999988754
No 294
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=36.39 E-value=51 Score=23.87 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=33.3
Q ss_pred CCCcccHHHHHHHHHHc-------C--CCCCHHHHHHHHHHHcCCCCCCCC-ccchhhh
Q 028539 157 RSGKIDLMELRDALYSI-------G--YAVPPSVLQLLMDKYDNRSGSRKL-GLSFDSF 205 (207)
Q Consensus 157 ~~G~I~~~e~~~~l~~~-------g--~~~~~~~~~~l~~~~d~~~~~~~g-~I~~~eF 205 (207)
++-.|+.+||.+++..- | ..++.++++.+.+.+... ..+ .++..|-
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~---~~~~~lt~~e~ 135 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKA---PKGEKLTLAEA 135 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhc---cccCCCCHHHH
Confidence 45679999999988852 1 146888999999998875 444 3776654
No 295
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=35.57 E-value=94 Score=24.16 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 114 TIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 114 ~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
.+.+|-++.|. |.++|+.++.-+..
T Consensus 165 ~L~eMK~Lad~----geldFn~iL~~Mk~ 189 (246)
T PF10897_consen 165 NLGEMKRLADK----GELDFNDILDKMKL 189 (246)
T ss_pred HHHHHHHhhhc----CCCcHHHHHHHHHH
Confidence 34444455554 67788877776654
No 296
>PRK12469 RNA polymerase factor sigma-54; Provisional
Probab=35.26 E-value=2.6e+02 Score=24.94 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=34.4
Q ss_pred CCCCChhHHHHHHHHHcCCCCCccc--HHHHHHHHHhcCCCCCHHHHHHHH---HHhcCCCCCCCcCHHHHHHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFID--ENELQQALSSGYQRFSLSTIRLLM---FLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~--~~e~~~~l~~lg~~~~~~~~~~l~---~~~d~~~~~g~I~~~eF~~~~ 140 (207)
+++.+..-...+...+| .+|++. .+|+...+. -++.++.+++..++ ..|+. -|.|.=++.|.+.+-
T Consensus 138 ~~~~~~~ia~~lI~~LD--~~GyL~~~~~eia~~~~-~~l~~~~~~ve~vL~~iQ~leP-~GVgARdL~ECL~lQ 208 (481)
T PRK12469 138 LTERDREIARTIIDALD--DDGYLRQDLSELAEAAD-PELGLSEQELEVALRLVQSLDP-PGVAARDLSECLLLQ 208 (481)
T ss_pred CCHHHHHHHHHHHhhCC--CCCCCCCCHHHHHhccc-cccCCCHHHHHHHHHHHhcCCC-CccCcCCHHHHHHHH
Confidence 33433333334444444 456654 555543311 11235666666544 44555 788888888877653
No 297
>PRK10867 signal recognition particle protein; Provisional
Probab=35.08 E-value=2.1e+02 Score=25.05 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 110 FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 110 ~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
+..++.+++...+.. |..++++|+.-+..+
T Consensus 311 ~~~~~~~~~~~~~~~----g~f~l~d~~~q~~~~ 340 (433)
T PRK10867 311 VDEEKAEKLAKKLKK----GKFDLEDFLEQLQQM 340 (433)
T ss_pred hCHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 334445555555543 678888888877654
No 298
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=35.05 E-value=2.2e+02 Score=22.25 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcC---CCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH---HH-----HHH-HH
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALSSGY---QRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD---LW-----SCL-GQ 145 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg---~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~---~~-----~~l-~~ 145 (207)
++.+++........|.|+..|+...+.... ..++.+++.+-+..+.. -+.+ +....|-. ++ ..+ ..
T Consensus 98 qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~-lg~g-~~l~~~~sg~~vv~s~~~~e~~~~ 175 (223)
T PF04157_consen 98 QIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEV-LGLG-FRLRKFGSGVKVVQSVPYSELSKD 175 (223)
T ss_dssp HHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCC-CTSS-EEEEEETTTEEEEECST-CHH-HH
T ss_pred HHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHH-cCCC-eEEEEeCCCcEEEEeCCchhhhHH
Confidence 455666666666678999999988888642 24677777777777765 4432 11111110 00 001 22
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
...+.+.......|.++..++.+-+. .+...+.+.+..+.
T Consensus 176 ~~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~~~ 215 (223)
T PF04157_consen 176 QSRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEELE 215 (223)
T ss_dssp HHHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHHHH
Confidence 23444444244568999999887765 56666666665554
No 299
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=34.62 E-value=59 Score=25.00 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMF 120 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~ 120 (207)
.+.++++|..||.+.--.++.+++..+|..-++--+..-|+.++.
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 446788899999887788889999988887665445555544443
No 300
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=34.56 E-value=1.2e+02 Score=23.29 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 113 STIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
.+|..|+..|-. . ..+.|++|..+|..+
T Consensus 4 ~D~~~Ll~~F~~-~--~~~~F~~F~~~W~~~ 31 (194)
T PF09808_consen 4 EDIDELLQRFQQ-A--ESVRFEDFKRLWREM 31 (194)
T ss_pred HHHHHHHHHHHH-c--CCCCHHHHHHHHHHC
Confidence 466677777765 3 678888888888764
No 301
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=33.31 E-value=85 Score=21.22 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 160 KIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
.|+.++++++.+-....+++++++.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 477888888887666677877766555544
No 302
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=33.31 E-value=14 Score=28.65 Aligned_cols=43 Identities=23% Similarity=0.146 Sum_probs=25.7
Q ss_pred CCCcCHHHHHHHHHH----HHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 028539 128 SLRIGPKEFADLWSC----LGQWRAIFERYDRDRSGKIDLMELRDAL 170 (207)
Q Consensus 128 ~g~I~~~eF~~~~~~----l~~~~~~F~~~D~d~~G~I~~~e~~~~l 170 (207)
+|.|+-.|.+-+... ..-++..|+..|.|+||.|..+|+...+
T Consensus 202 d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 455555555443322 2346667777777777887777765443
No 303
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=33.15 E-value=49 Score=32.83 Aligned_cols=10 Identities=0% Similarity=-0.243 Sum_probs=4.9
Q ss_pred CcccHHHHHH
Q 028539 159 GKIDLMELRD 168 (207)
Q Consensus 159 G~I~~~e~~~ 168 (207)
--++.+.+..
T Consensus 197 ppls~~q~v~ 206 (2365)
T COG5178 197 PPLSKSQWVL 206 (2365)
T ss_pred CcccHHHHHh
Confidence 3455555443
No 304
>PRK05932 RNA polymerase factor sigma-54; Reviewed
Probab=32.88 E-value=2.5e+02 Score=24.79 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=35.0
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcc--cHHHHHHHHHhcCCCCCHHHHHHHH---HHhcCCCCCCCcCHHHHHHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFI--DENELQQALSSGYQRFSLSTIRLLM---FLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I--~~~e~~~~l~~lg~~~~~~~~~~l~---~~~d~~~~~g~I~~~eF~~~~ 140 (207)
+++.+..-...+...+| .+|++ +.+++... ++ ++.+++..++ ..++. .|-|.=++.|.+.+-
T Consensus 116 l~~~~~~ia~~iI~~LD--~~GyL~~~~~eia~~---l~--~~~~~v~~~l~~lQ~leP-~GigAr~L~ECLllQ 182 (455)
T PRK05932 116 FSETDRAIATYIIDALD--DEGYLTEDLEEIAES---LG--VELDEVEAVLKRIQSFDP-AGVGARDLQECLLLQ 182 (455)
T ss_pred CCHHHHHHHHHHHHhCC--CCCCCCCCHHHHHHH---cC--CCHHHHHHHHHHHhcCCC-CccCcCCHHHHHHHH
Confidence 44444433444444444 46766 45555444 33 4566665544 44555 788888888877653
No 305
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=32.03 E-value=85 Score=26.58 Aligned_cols=54 Identities=11% Similarity=0.034 Sum_probs=31.4
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 85 MVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 85 ~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
++|..+.|+++.--++.+|..+.-.--.+.++.||.+.. +.+|.+.+-.|..++
T Consensus 118 A~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is--ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 118 AEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS--DSRGIMQEIQRDQFL 171 (434)
T ss_pred hcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc--cchHHHHHHHHHHHH
Confidence 566666677776666666665433333556666666665 455655555444444
No 306
>PF13835 DUF4194: Domain of unknown function (DUF4194)
Probab=32.00 E-value=2.1e+02 Score=21.09 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=41.0
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC-----CCCHHHHHHHHHHHc
Q 028539 129 LRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY-----AVPPSVLQLLMDKYD 190 (207)
Q Consensus 129 g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~-----~~~~~~~~~l~~~~d 190 (207)
.++++.|-+-++.....+.+.- ....++.-.|+.+|+.+.+..+.. .....+++.+++.+.
T Consensus 70 ~~L~~~eTilLL~LR~~y~e~~-~~~~~~~~~v~~~ei~e~~~~~~~~~~d~~~~~~~~~~~l~~l~ 135 (166)
T PF13835_consen 70 RRLSLEETILLLVLRLLYEEKE-SLSGSERVVVTREEIVEKLESFLPESRDEAPFKKRLDAALRRLK 135 (166)
T ss_pred cCCCHHHHHHHHHHHHHHHHHh-ccCCCCcEEEeHHHHHHHHHHHccccccccchHHHHHHHHHHHH
Confidence 5688888777665433222222 223455668999999999998643 556778888888875
No 307
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.52 E-value=2.7e+02 Score=24.36 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 111 SLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 111 ~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
..++..++...+.. |..+|++|+.-+..+
T Consensus 311 ~~~~~~~~~~~~~~----~~f~l~d~~~q~~~~ 339 (428)
T TIGR00959 311 DEEEAKKLAEKMKK----GQFDLEDFLEQLRQI 339 (428)
T ss_pred CHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 34444455554443 678888888877654
No 308
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.45 E-value=1.5e+02 Score=21.48 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=31.0
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 028539 81 RSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 81 ~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~ 124 (207)
.+++.+-...++.++.+|+...|+.-+..++..+|-+.+..+-.
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e 64 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 33444443345688999998888887778888888777776654
No 309
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.40 E-value=2e+02 Score=20.71 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=18.9
Q ss_pred cccHHHHHHHHH-hcCCCCCHHHHHHHHHHhcC
Q 028539 93 FIDENELQQALS-SGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 93 ~I~~~e~~~~l~-~lg~~~~~~~~~~l~~~~d~ 124 (207)
.+...||..+|+ .+ +++..+..++++.+..
T Consensus 38 ~l~HGef~~Wle~~~--~~s~rtA~~~M~va~~ 68 (130)
T PF11300_consen 38 LLPHGEFGKWLEEEV--GYSQRTAQRFMQVAEE 68 (130)
T ss_pred hCCHHHHHHHHHHHc--CcCHHHHHHHHHHHHH
Confidence 366777777777 44 4666666666655543
No 310
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=31.12 E-value=1.5e+02 Score=25.48 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchhhh
Q 028539 162 DLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFDSF 205 (207)
Q Consensus 162 ~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~eF 205 (207)
..-.|..+|..+..++++++++.|-+.|..... ......|||-
T Consensus 286 ~~~~Ll~~L~~l~~~l~~~~~~~l~s~~~~~v~-d~~e~gWEE~ 328 (377)
T PF14728_consen 286 CATQLLILLLKLRFNLNEDDVELLESVFSPSVQ-DSTEQGWEES 328 (377)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcC-cCCcCChHHH
Confidence 344555555555556777777777666654321 3334566653
No 311
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=31.05 E-value=17 Score=28.22 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=31.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Q 028539 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~ 141 (207)
||.++..||.-+-.-+ -..+.-+..+|...|. ++++.|.++||..++.
T Consensus 202 d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~-~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPL--IPMEHCTTRFFETCDL-DNDKYIALDEWAGCFG 249 (259)
T ss_pred cccccccccccccCCc--ccHHhhchhhhhcccC-CCCCceeHHHhhcccC
Confidence 5666665553322111 1223345678899999 9999999999987664
No 312
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=30.94 E-value=2.4e+02 Score=21.45 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHH----
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRD---- 168 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~---- 168 (207)
.|+.+||+.-.+.-.+..-++.+-.++-. -..|.++..+|..-+ ++.+.. .-|+.+-|..
T Consensus 3 IIdFnelKNKvkdkDiDKFE~YiY~ly~~----~a~Gklsm~dFsk~I---------~~Ymee---NNISqeKf~niQkk 66 (186)
T PF12983_consen 3 IIDFNELKNKVKDKDIDKFEEYIYSLYYD----VAEGKLSMADFSKKI---------MEYMEE---NNISQEKFLNIQKK 66 (186)
T ss_pred eecHHHHhhhcccccHHHHHHHHHHHHHH----HhcCcccHHHHHHHH---------HHHHHH---cCCcHHHHHHHHHH
Confidence 56666666544433222212222222222 234777777776522 222222 2355554432
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcCC
Q 028539 169 ALYSIGYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 169 ~l~~~g~~~~~~~~~~l~~~~d~~ 192 (207)
+|.+.| +..++++..++.+..|
T Consensus 67 ~mERYG--fd~~~iE~q~K~~Gid 88 (186)
T PF12983_consen 67 FMERYG--FDPSEIEKQMKSMGID 88 (186)
T ss_pred HHHHhC--CCHHHHHHHHHHcCCC
Confidence 333344 4455566666665544
No 313
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=30.80 E-value=40 Score=21.98 Aligned_cols=43 Identities=7% Similarity=0.157 Sum_probs=24.0
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccch
Q 028539 151 ERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSF 202 (207)
Q Consensus 151 ~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~ 202 (207)
..+..+..+.|+.++.+..++ ......+..+++-+.. .|.|+|
T Consensus 44 ~~w~~n~~~~lt~~~~~~~i~----~~d~~~~~ri~~FL~~-----~G~INf 86 (86)
T PF04433_consen 44 AEWRKNPNKYLTKTDARKLIK----GIDVNKIRRIYDFLER-----WGLINF 86 (86)
T ss_dssp HHHHHHTTS---HHHHHHHTT----SSSHHHHHHHHHHHHH-----TTSSSS
T ss_pred HHHHHCCCCcccHHHHHHHcc----ccCHHHHHHHHHHHHH-----cCccCC
Confidence 333445567788887777666 2455666777766663 356654
No 314
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=30.76 E-value=2e+02 Score=20.39 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=7.6
Q ss_pred HHHhhhCCCCCCcccHH
Q 028539 148 AIFERYDRDRSGKIDLM 164 (207)
Q Consensus 148 ~~F~~~D~d~~G~I~~~ 164 (207)
..|..+...+.++|...
T Consensus 25 Q~f~~~s~~~k~fI~~~ 41 (130)
T COG5611 25 QFFEELSQKGKLFIPEE 41 (130)
T ss_pred HHHHhcCcCCCccchHH
Confidence 34444444444444444
No 315
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=30.42 E-value=1e+02 Score=23.50 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 028539 88 RDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 88 ~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~ 124 (207)
.|.+|+++.++|.+.++.-+..++.+.+.+++..-++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDK 64 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCC
Confidence 4788999999999998865667889999888876544
No 316
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=30.28 E-value=1.2e+02 Score=27.35 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=36.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCC
Q 028539 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~ 192 (207)
++.+-...+..+.|.++.+|..++|..+.+.-..-+++++++....|
T Consensus 457 ~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 457 SRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcc
Confidence 44555566777888899999999999988766556688888887654
No 317
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=30.18 E-value=93 Score=23.80 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=24.9
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 028539 87 DRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 87 D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~ 124 (207)
..|.+|++..+||.+.++.-+..++.+.+++++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 45778999999999998877777888999988887654
No 318
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=29.82 E-value=1.7e+02 Score=19.40 Aligned_cols=51 Identities=18% Similarity=-0.073 Sum_probs=37.8
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 91 SGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
.-.+.-.+|+..|+...--....+...|-..+|- ..++.|+.=||-.+.+.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDl-T~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDL-TCNDYISNFEFDVFTRL 70 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-T-TSSSEEEHHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhc-ccCCccchhhhHHHHHH
Confidence 3579999999999975433444666788888999 99999998888776654
No 319
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.68 E-value=3e+02 Score=22.16 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHcC
Q 028539 178 PPSVLQLLMDKYDN 191 (207)
Q Consensus 178 ~~~~~~~l~~~~d~ 191 (207)
++++-..|+..+..
T Consensus 121 SEeEk~Dl~~~Y~k 134 (264)
T KOG0719|consen 121 SEEEKKDLLKLYNK 134 (264)
T ss_pred cHHHHHHHHHHHHh
Confidence 45555555555554
No 320
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.52 E-value=1.1e+02 Score=21.42 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 161 IDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 161 I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
-+.+|++.+|..-+..++.++++.|+...+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 477899999998888889999998887654
No 321
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=29.48 E-value=89 Score=25.38 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=24.6
Q ss_pred CCCCcCHHHHHHHHHH---H----HHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 127 DSLRIGPKEFADLWSC---L----GQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 127 ~~g~I~~~eF~~~~~~---l----~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
.||+|+-.|....-.. + +.-+.+.+.|+..+....+.+++.+.++.
T Consensus 68 ADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 68 AKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 4677777776522111 1 23334555555556666666666665553
No 322
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=29.42 E-value=4.6e+02 Score=24.23 Aligned_cols=95 Identities=7% Similarity=0.068 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCC--CCCcCHHHHHHHHHHH---HHHHHHHh
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHD--SLRIGPKEFADLWSCL---GQWRAIFE 151 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~--~g~I~~~eF~~~~~~l---~~~~~~F~ 151 (207)
.+..++|..+...+.-..+..-+..+|..+...-.......++..+.. .+ .....+...+.++... +....+|+
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 344455555543322233444444444433222223333344443332 21 1233344444444332 34444444
Q ss_pred hhCCCCCCcccHHHHHHHHHHcC
Q 028539 152 RYDRDRSGKIDLMELRDALYSIG 174 (207)
Q Consensus 152 ~~D~d~~G~I~~~e~~~~l~~~g 174 (207)
.+-. -..++..-+...+...|
T Consensus 183 ~m~~--~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 183 EMPE--RNLASWGTIIGGLVDAG 203 (697)
T ss_pred cCCC--CCeeeHHHHHHHHHHCc
Confidence 4421 23455555555555444
No 323
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=29.31 E-value=2.2e+02 Score=20.60 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=28.4
Q ss_pred CCCCcCHHHHHHHHHHH----------HHHHHHHhhhCCCCCCcccHHHHHHHHHHc
Q 028539 127 DSLRIGPKEFADLWSCL----------GQWRAIFERYDRDRSGKIDLMELRDALYSI 173 (207)
Q Consensus 127 ~~g~I~~~eF~~~~~~l----------~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 173 (207)
....++.++|+.-+..- ..+..+|+.++.. |+..|+.+++..+
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r~----Is~gei~~v~s~L 124 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKRH----ISPGEIDKVRSRL 124 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHh----CCHHHHHHHHHHC
Confidence 35678888888766541 2344777777544 7777777777664
No 324
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=29.23 E-value=3.7e+02 Score=23.02 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=11.7
Q ss_pred CCCcccHHHHHHHHHhc
Q 028539 90 RSGFIDENELQQALSSG 106 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~l 106 (207)
++..|+...+.+++...
T Consensus 368 RNraiSSSAIsrAvsdA 384 (498)
T KOG4849|consen 368 RNRAISSSAISRAVSDA 384 (498)
T ss_pred hcchhhHHHHHHHhccc
Confidence 35678888887777743
No 325
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=29.15 E-value=3.7e+02 Score=27.11 Aligned_cols=10 Identities=70% Similarity=1.109 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q 028539 7 SYSSSQSYAP 16 (207)
Q Consensus 7 ~~~~~~~~~~ 16 (207)
+|+++-+|++
T Consensus 1445 s~~ssp~~s~ 1454 (1605)
T KOG0260|consen 1445 SYSSSPGYSP 1454 (1605)
T ss_pred CCCCCCCCCC
Confidence 3444444543
No 326
>PHA01351 putative minor structural protein
Probab=29.04 E-value=3.9e+02 Score=25.24 Aligned_cols=79 Identities=9% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 028539 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~ 169 (207)
+.|.++..|++.-++.+| ..+..+.++...+.. . +..-..++.+....+.+ .|+..|+..-
T Consensus 589 kKGY~d~qq~ksElk~LG--idKe~i~klin~Y~q-l----------~qt~~eIkYIqe~LK~f------~IspkeAitE 649 (1070)
T PHA01351 589 KKGYLSLDEIKKQFKAIG--IIKEYEDAFINFYNQ-E----------LQISAFLTILKSQLRQF------QIDPKEAETE 649 (1070)
T ss_pred HhccccHHHHHHHHHhhc--cchhHHHHHHHHHHH-H----------HHHHHHHHHHHHHHHHc------ccCHHHHHHH
Q ss_pred HHHcCCCCCHHHHHHHHHHH
Q 028539 170 LYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 170 l~~~g~~~~~~~~~~l~~~~ 189 (207)
|+.++ ++++.+..++..+
T Consensus 650 LKKL~--ISdaLAn~IV~eY 667 (1070)
T PHA01351 650 LKKLN--INEYLANQIIQEE 667 (1070)
T ss_pred HHHcC--chHHHHHHHHHHH
No 327
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=28.96 E-value=2.6e+02 Score=21.23 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcC------CCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 028539 98 ELQQALSSGYQRFSLSTIRLLMFLFRN------PHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALY 171 (207)
Q Consensus 98 e~~~~l~~lg~~~~~~~~~~l~~~~d~------~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~ 171 (207)
-|+.+|..+.+.-....+.+++..|-. |+.....+.+.-..++..+--+.. ..+..+-.-+++.++|.+.++
T Consensus 88 ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnT--dlHn~~~~~kmt~~~Fi~~~~ 165 (190)
T PF01369_consen 88 ALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNT--DLHNPNIKKKMTKEDFIKNTR 165 (190)
T ss_dssp HHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHH--HHH-TTSSSS--HHHHHHHTT
T ss_pred HHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhH--HHHhhccccCCcHHHHHHHhh
Confidence 344444455555555666666655532 111233444432222221111111 112333335688888888888
Q ss_pred Hc--CCCCCHHHHHHHHHHHc
Q 028539 172 SI--GYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 172 ~~--g~~~~~~~~~~l~~~~d 190 (207)
.+ +..++++.+..++....
T Consensus 166 ~~~~~~~~~~~~L~~iY~~I~ 186 (190)
T PF01369_consen 166 GIDDGKDIPEEFLESIYDSIK 186 (190)
T ss_dssp TTBTTBS--HHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHH
Confidence 64 45688888888877654
No 328
>PRK01844 hypothetical protein; Provisional
Probab=28.93 E-value=1.6e+02 Score=18.84 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=35.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 146 WRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 146 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
.+..|+.+=++ +-.|+.+-+|.++..+|-+.++..+..+++.+..
T Consensus 25 ark~~~k~lk~-NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk~ 69 (72)
T PRK01844 25 ARKYMMNYLQK-NPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNK 69 (72)
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 34445554333 4679999999999999999999999999988743
No 329
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=28.70 E-value=2.4e+02 Score=20.90 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=32.7
Q ss_pred HHHHHHhhh-CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 145 QWRAIFERY-DRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 145 ~~~~~F~~~-D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
.+.-+|+.| |.+.+-..+.+++.+-|.+.| ..+++|.+.+.-++
T Consensus 4 VL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 4 VLMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 345567776 445567889999999999999 66778877666554
No 330
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=28.02 E-value=1.3e+02 Score=20.94 Aligned_cols=6 Identities=33% Similarity=0.606 Sum_probs=3.7
Q ss_pred CCCCCC
Q 028539 6 GSYSSS 11 (207)
Q Consensus 6 ~~~~~~ 11 (207)
..|||.
T Consensus 24 ~qY~sq 29 (124)
T PF12355_consen 24 DQYGSQ 29 (124)
T ss_pred cccccc
Confidence 456666
No 331
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=27.78 E-value=1.7e+02 Score=20.49 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=23.5
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 147 RAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
..++..+. ...-.|+.+||.++|. .|+..+..+++++.
T Consensus 7 ~~L~~~~~-~~~~~vtl~elA~~l~-----cS~Rn~r~lLkkm~ 44 (115)
T PF12793_consen 7 QRLWQHYG-GQPVEVTLDELAELLF-----CSRRNARTLLKKMQ 44 (115)
T ss_pred HHHHHHcC-CCCcceeHHHHHHHhC-----CCHHHHHHHHHHHH
Confidence 34444443 4455677777777765 56666777777765
No 332
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=27.73 E-value=2.1e+02 Score=19.80 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHH
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADL 139 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~ 139 (207)
.||.+.+..+|+..|.......+..+...+.. .+.++.+.-
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g------kdIeElIa~ 56 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE------VNIDEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC------CCHHHHHHh
Confidence 89999999999999999999899888888864 566666653
No 333
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=27.36 E-value=3.5e+02 Score=22.26 Aligned_cols=28 Identities=4% Similarity=-0.032 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Q 028539 113 STIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (207)
Q Consensus 113 ~~~~~l~~~~d~~~~~g~I~~~eF~~~~~ 141 (207)
.++..++..... .+.-...|..+..++.
T Consensus 22 ~~L~~il~~ia~-tg~~~~~W~~lk~l~~ 49 (288)
T PF09184_consen 22 PELEDILEHIAK-TGETWYPWSLLKSLFR 49 (288)
T ss_pred HHHHHHHHHHHh-hCCCcchHHHHHHHHH
Confidence 344445555554 4445555665555544
No 334
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=27.04 E-value=3.4e+02 Score=23.82 Aligned_cols=28 Identities=4% Similarity=-0.139 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH
Q 028539 112 LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL 143 (207)
Q Consensus 112 ~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l 143 (207)
.++.+++...+.. |..++++|+.-+..+
T Consensus 305 ~~~~~~~~~~~~~----~~f~l~d~~~q~~~~ 332 (437)
T PRK00771 305 EEEEEKDVEKMMK----GKFTLKDMYKQLEAM 332 (437)
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHHHH
Confidence 3344445555443 678888888876654
No 335
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=27.03 E-value=1.2e+02 Score=24.09 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=13.0
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHH
Q 028539 106 GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFA 137 (207)
Q Consensus 106 lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~ 137 (207)
+++.++...+..|..++.+ -.+-.+++.+|.
T Consensus 188 ~~i~ls~~q~~~i~~l~~~-~~~~~~~~~~~k 218 (225)
T PF06207_consen 188 YNINLSDEQIQQIVNLMKK-IQNLNIDWKQVK 218 (225)
T ss_pred cCCCCCHHHHHHHHHHHHH-HHcCCCCHHHHH
Confidence 3444444444444444433 333334444443
No 336
>PRK01294 lipase chaperone; Provisional
Probab=26.98 E-value=3.9e+02 Score=22.58 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHH
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALS 104 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~ 104 (207)
.++.+|.-|=. .-|..+..+++..++
T Consensus 87 ~~Rd~FDYfLs-~~gE~~l~~i~~~v~ 112 (336)
T PRK01294 87 ALRDFFDYFLS-ALGELDLAAIDALVE 112 (336)
T ss_pred HHHHHHHHHhh-ccCCCCHHHHHHHHH
Confidence 34455543332 234445555544444
No 337
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=26.91 E-value=2.6e+02 Score=20.60 Aligned_cols=106 Identities=10% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH------------
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD------------ 138 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~------------ 138 (207)
+++....-++.++.... .+|.+...++...| +++...+..++..+.. .|.|++..+..
T Consensus 4 ~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L-----~Vsp~sVt~ml~rL~~---~GlV~~~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 4 LSETEEDYLETIYELLE--EKGFARTKDIAERL-----KVSPPSVTEMLKRLER---LGLVEYEPYGGVTLTEKGREKAK 73 (154)
T ss_pred cchHHHHHHHHHHHHHh--ccCcccHHHHHHHh-----CCCcHHHHHHHHHHHH---CCCeEEecCCCeEEChhhHHHHH
Confidence 33444555677776665 67889988888777 4566777777777765 34444432211
Q ss_pred -HHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 139 -LWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 139 -~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
++..-..+...|... -| |+.++..+-...+...++++.++.|.+.++.
T Consensus 74 ~~~r~hrlle~fL~~~----lg-~~~~~~~~ea~~leh~~s~~~~~rl~~~l~~ 122 (154)
T COG1321 74 ELLRKHRLLERFLVDV----LG-LDWEEAHEEAEGLEHALSDETAERLDELLGF 122 (154)
T ss_pred HHHHHHHHHHHHHHHH----hC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhCC
Confidence 111122233333311 12 5666666555666777999999999998873
No 338
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=26.82 E-value=1.1e+02 Score=16.25 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=13.3
Q ss_pred cccHHHHHHHHHHcCCCC
Q 028539 160 KIDLMELRDALYSIGYAV 177 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~~ 177 (207)
.++..|+++.|+..|...
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 467788999998887654
No 339
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=26.81 E-value=1.3e+02 Score=25.84 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=56.1
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCCC-------CHH----HHHHHHHHhcCCCCCCCcCH------------------
Q 028539 83 FEMVDRDRSGFIDENELQQALSSGYQRF-------SLS----TIRLLMFLFRNPHDSLRIGP------------------ 133 (207)
Q Consensus 83 F~~~D~d~~G~I~~~e~~~~l~~lg~~~-------~~~----~~~~l~~~~d~~~~~g~I~~------------------ 133 (207)
|...|++....++.+|...++..+|+.. +.+ .+..++..++. .+..-|-+
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~-~gREGVVlK~~~~~~~~~KYtT~~~n 241 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNK-EGREGVVMKDPEMRVKPLKYTTSYAN 241 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhh-cCcceEEEcCccccCCcceeecCccC
Confidence 4444556678999999999999877543 333 34456566665 33222222
Q ss_pred -HHHHHHHHH----------HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 028539 134 -KEFADLWSC----------LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMD 187 (207)
Q Consensus 134 -~eF~~~~~~----------l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~ 187 (207)
.+....+.. -.-+|.+|..+..+ ++.+|+++....+|..+-.-.++.+-+
T Consensus 242 ~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~~----~~~~e~~~ra~~LG~Ail~p~~esI~~ 302 (374)
T TIGR01209 242 INDIKYAARYFFELGRDFFFSRILREAFQSYEFG----EKGEEFRRRAKELGEAILQPMVESIED 302 (374)
T ss_pred hHHHHHHHhhccccCchHHHHHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111111 13567777776555 667777777777775544443444333
No 340
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=26.60 E-value=1.5e+02 Score=19.10 Aligned_cols=44 Identities=20% Similarity=0.113 Sum_probs=27.0
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 95 DENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 95 ~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
+..+|..+| .|...+.+.+...+..++..+--+.++.+||+.++
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 356666666 45567777777777776431234567777776653
No 341
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=26.52 E-value=22 Score=30.37 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHcCC
Q 028539 74 GTHPDVIRSFEMVDRD 89 (207)
Q Consensus 74 ~~~~~l~~~F~~~D~d 89 (207)
.....|+++|+.+-..
T Consensus 46 ~~~~~LEdLF~~YGVR 61 (386)
T PF01698_consen 46 RELRGLEDLFQGYGVR 61 (386)
T ss_dssp ----------------
T ss_pred cchhhHHHHHhhcccc
Confidence 3355777788766543
No 342
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=26.40 E-value=2e+02 Score=19.03 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCcC---HHHHHHHHHH--HHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCC
Q 028539 109 RFSLSTIRLLMFLFRNPHDSLRIG---PKEFADLWSC--LGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAV 177 (207)
Q Consensus 109 ~~~~~~~~~l~~~~d~~~~~g~I~---~~eF~~~~~~--l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~ 177 (207)
.++...+++|.+. .+..+|+ ++|....+.. .+-++.+-...+-.+--+|+.+++..+|+..|..+
T Consensus 13 gi~k~~I~RLarr----~GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~~ 82 (85)
T cd00076 13 GITKPAIRRLARR----GGVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 82 (85)
T ss_pred cCCHHHHHHHHHH----cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCCc
Confidence 3555555555554 3345555 4444443322 12333343333444556789999998888877543
No 343
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=26.30 E-value=71 Score=27.16 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhh
Q 028539 112 LSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERY 153 (207)
Q Consensus 112 ~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~ 153 (207)
..++-+|+.++.. |+|.+++|+.-...|+++.++|+.+
T Consensus 317 ~~diP~lv~~y~~----Gkl~~d~lvt~~~~Le~INeaf~~m 354 (366)
T COG1062 317 RSDIPRLVDLYMA----GKLPLDRLVTHTIPLEDINEAFDLM 354 (366)
T ss_pred ccchhHHHHHHHc----CCCchhHHhhccccHHHHHHHHHHH
Confidence 4444555555544 6677777766666666666666665
No 344
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=26.28 E-value=3.7e+02 Score=22.15 Aligned_cols=97 Identities=8% Similarity=-0.110 Sum_probs=54.9
Q ss_pred CCCcccHHHHHHHHHh-----cCCC-CCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH--------HHHHHHHHhhhCC
Q 028539 90 RSGFIDENELQQALSS-----GYQR-FSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--------LGQWRAIFERYDR 155 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~-----lg~~-~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~--------l~~~~~~F~~~D~ 155 (207)
.+|.|=.-+|..+|.. ++.. .+=...+.++..+. +.+.-.|..|..+|.. .+.+..+++.+=.
T Consensus 155 ~~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mG---g~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~ 231 (289)
T cd00893 155 SDGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMG---GKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIF 231 (289)
T ss_pred CCCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhC---CCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHcc
Confidence 3566555566666653 1111 11122334444443 2334557888887753 2456666666644
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 156 DRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 156 d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
++-..+..+.++.+-..+...++++++...+...
T Consensus 232 ~~lp~~~~~~i~~l~~r~~l~~s~~~a~~~~~~l 265 (289)
T cd00893 232 SGLPCFRGSTIKKLKERLCLNMSEKEAINTVMKK 265 (289)
T ss_pred CCCcccCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4445556566666666777778988887666554
No 345
>PLN02859 glutamine-tRNA ligase
Probab=26.09 E-value=5.3e+02 Score=24.71 Aligned_cols=91 Identities=13% Similarity=0.121 Sum_probs=54.8
Q ss_pred HHHHHHhcCCC--CCHHHHHHHHHHhcCCCCCCCcCHHHHHH-HHHH-----HHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 028539 99 LQQALSSGYQR--FSLSTIRLLMFLFRNPHDSLRIGPKEFAD-LWSC-----LGQWRAIFERYDRDRSGKIDLMELRDAL 170 (207)
Q Consensus 99 ~~~~l~~lg~~--~~~~~~~~l~~~~d~~~~~g~I~~~eF~~-~~~~-----l~~~~~~F~~~D~d~~G~I~~~e~~~~l 170 (207)
|..++...+.. .++..-..|+.+... -....+.-..++. .+.. -.++..+|+.+-..+...++..+|...|
T Consensus 35 L~~iI~ea~~~~~~dk~~g~LLy~LAtk-~~~~~~~~r~~lv~~I~~gkIkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~C 113 (788)
T PLN02859 35 LTAVIHEAGVTNGCDKTVGNLLYTVATK-YPANALVHRPTLLSYIVSSKIKTPAQLEAAFSFFSSTGPESFDLNKFEEAC 113 (788)
T ss_pred HHHHHHhcCCccCCChHHHHHHHHHHHh-cCCccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCccCHHHHHHhC
Confidence 45555554442 244555555555554 3223333334443 2222 2578888888866655578888887766
Q ss_pred HHcCCCCCHHHHHHHHHHHcC
Q 028539 171 YSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 171 ~~~g~~~~~~~~~~l~~~~d~ 191 (207)
.+|..+++++++..+..+-.
T Consensus 114 -GVGV~VT~EqI~~~V~~~i~ 133 (788)
T PLN02859 114 -GVGVVVSPEDIEAAVNEVFE 133 (788)
T ss_pred -CCCEEECHHHHHHHHHHHHH
Confidence 36778999999988886543
No 346
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=26.08 E-value=3.6e+02 Score=21.91 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=61.7
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-CC-----CCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHH
Q 028539 92 GFIDENELQQALSSGYQRFSLSTIRLLMFLFRN-PH-----DSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLME 165 (207)
Q Consensus 92 G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~-~~-----~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e 165 (207)
-.++.+|+...|.+-|+.++...|..+++.+.. +. -...|.-..+..+.........+|..+-.+.+ ++.++
T Consensus 135 ~~ltq~ela~~lgk~g~~isrs~Isn~lrll~~L~~~i~~~l~~glGr~~~~~L~~L~~~a~~~w~~~~~~~~--~~f~~ 212 (258)
T TIGR03764 135 ESLSQRELARRLSADGYPISQSHISRMGDTVEYLYPAIPNLLYSGLGRPQIEKLLSLRKAAEKIWNRYSSGVE--VDFEE 212 (258)
T ss_pred CCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHhChHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHccccC--CCHHH
Confidence 368888888888888888888888877777662 00 12346667777777777777888888865543 66665
Q ss_pred H-HHHHHHcC--CCCCHHHH-HHHHHHHc
Q 028539 166 L-RDALYSIG--YAVPPSVL-QLLMDKYD 190 (207)
Q Consensus 166 ~-~~~l~~~g--~~~~~~~~-~~l~~~~d 190 (207)
+ .++|..+. ...+.+.+ ++++..+-
T Consensus 213 ~f~~~~~~~d~~~~~~~~~~~deli~~~~ 241 (258)
T TIGR03764 213 VFQEVLARFDDPEEFSLERFRDELIGEMA 241 (258)
T ss_pred HHHHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 4 45666655 23343333 24444443
No 347
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=26.02 E-value=3.7e+02 Score=21.98 Aligned_cols=93 Identities=10% Similarity=0.133 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCC--
Q 028539 79 VIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRD-- 156 (207)
Q Consensus 79 l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d-- 156 (207)
++++...+..+-...++.+++...+ .++...+.++|+..- -+++.+|+..+......+.+- +.+
T Consensus 193 i~~~~~~i~~~~~~~~tl~~lA~~~-----~~S~~~l~r~Fk~~~------G~t~~~~l~~~Rl~~A~~lL~---~~~~s 258 (302)
T PRK10371 193 VSQMLGFIAENYDQALTINDVAEHV-----KLNANYAMGIFQRVM------QLTMKQYITAMRINHVRALLS---DTDKS 258 (302)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHH-----CcCHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh---cCCCC
Confidence 3344443333333345555544433 466777777776542 267888887665432111111 111
Q ss_pred ------CCCcccHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 028539 157 ------RSGKIDLMELRDALYS-IGYAVPPSVLQLLMD 187 (207)
Q Consensus 157 ------~~G~I~~~e~~~~l~~-~g~~~~~~~~~~l~~ 187 (207)
..|+-+...|.++++. .| +++.+.+...+
T Consensus 259 i~eIA~~~Gf~~~s~F~r~Fk~~~G--~tP~~yr~~~~ 294 (302)
T PRK10371 259 ILDIALTAGFRSSSRFYSTFGKYVG--MSPQQYRKLSQ 294 (302)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHC--cCHHHHHHHhh
Confidence 1356666666666654 34 66666655433
No 348
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=25.92 E-value=1.1e+02 Score=19.92 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 028539 161 IDLMELRDALYSIGYAVPPSVLQLLMD 187 (207)
Q Consensus 161 I~~~e~~~~l~~~g~~~~~~~~~~l~~ 187 (207)
|...+++++.+.+| +++.+|+.+-.
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~ie~ 33 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERVEL 33 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 55666666666666 55655555543
No 349
>PRK10788 periplasmic folding chaperone; Provisional
Probab=25.71 E-value=5.2e+02 Score=23.64 Aligned_cols=89 Identities=8% Similarity=-0.003 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHH--------------HHHHHHHhhhCCCCCCcccHH
Q 028539 99 LQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCL--------------GQWRAIFERYDRDRSGKIDLM 164 (207)
Q Consensus 99 ~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l--------------~~~~~~F~~~D~d~~G~I~~~ 164 (207)
+.+..+.+|+.++.+++...+...-.=..+|.++.+.|..++... ..+..+...+- ...+++..
T Consensus 101 l~q~A~~lgi~vsd~ev~~~I~~~p~Fq~~G~Fd~~~y~~~L~~~g~t~~~f~~~ir~~l~~~~l~~~i~--~~~~~~~~ 178 (623)
T PRK10788 101 LDQYARELGLGISDEQVKQAIFATPAFQTDGKFDNNKYLAILNQMGMTADQYAQALRQQLTTQQLINGVA--GTDFMLPG 178 (623)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHhCcccccCCCcCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh--hcCCCCHH
Confidence 344445678899999998877663210124667777776665431 12222333331 34577777
Q ss_pred HHHHHHHHc------------------CCCCCHHHHHHHHHHH
Q 028539 165 ELRDALYSI------------------GYAVPPSVLQLLMDKY 189 (207)
Q Consensus 165 e~~~~l~~~------------------g~~~~~~~~~~l~~~~ 189 (207)
|+..+.+.. ...+++++++.+++..
T Consensus 179 e~~~~~~~~~q~r~v~~~~i~~~~~~~~v~vsd~ei~~yy~~~ 221 (623)
T PRK10788 179 ETDELAALVAQQRVVREATIDVNALAAKQTVTDEEIKSYYDQN 221 (623)
T ss_pred HHHHHHHHhhceEEEEEEEEcHHHccCcCCCCHHHHHHHHHhC
Confidence 777665421 2356788888888764
No 350
>CHL00091 apcE phycobillisome linker protein
Probab=25.61 E-value=2.5e+02 Score=26.94 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=33.7
Q ss_pred CCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHHcC
Q 028539 127 DSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY-AVPPSVLQLLMDKYDN 191 (207)
Q Consensus 127 ~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~ 191 (207)
.+|.|+..||+..+.+-+..+..| |+....-+.-.--|+++| |- ..+.+|+...+..+..
T Consensus 304 rnG~IsVReFIR~LakS~~Yr~~f--~~~~~~~R~IEl~fkhlL---GR~p~~~~E~~~~~~i~a~ 364 (877)
T CHL00091 304 KNGQISIKEFIRALGKSEIYRKQF--YEPFVNSRVLELAFRHFL---GRGPSSLEEFQKYFAILSS 364 (877)
T ss_pred hcCCccHHHHHHHHhccHHHHHHh--ccCCCcchhHHHHhhhhc---CCCCCCHHHHHHHHHHHHc
Confidence 358999999999888776666665 333322221111223333 32 3456666666666543
No 351
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=25.49 E-value=2.9e+02 Score=20.66 Aligned_cols=36 Identities=3% Similarity=-0.017 Sum_probs=22.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 028539 66 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS 105 (207)
Q Consensus 66 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~ 105 (207)
+|+--.+++++..+..+-..-+ --++.+|++.+|..
T Consensus 35 ~gyR~Y~~~dl~rL~~I~~lr~----~G~sL~eI~~ll~~ 70 (172)
T cd04790 35 SNYRLYGERDLERLEQICAYRS----AGVSLEDIRSLLQQ 70 (172)
T ss_pred CCCccCCHHHHHHHHHHHHHHH----cCCCHHHHHHHHhc
Confidence 3455677777777755544422 34667777777764
No 352
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=25.42 E-value=2.6e+02 Score=22.03 Aligned_cols=10 Identities=20% Similarity=0.229 Sum_probs=5.5
Q ss_pred cHHHHHHHHH
Q 028539 162 DLMELRDALY 171 (207)
Q Consensus 162 ~~~e~~~~l~ 171 (207)
..++|.++|.
T Consensus 157 e~e~~~~~Le 166 (216)
T PF07957_consen 157 EQEEFEEFLE 166 (216)
T ss_pred cHHHHHHHHh
Confidence 3455666664
No 353
>PRK10945 gene expression modulator; Provisional
Probab=25.41 E-value=1.6e+02 Score=18.81 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=6.8
Q ss_pred cccHHHHHHHHHH
Q 028539 160 KIDLMELRDALYS 172 (207)
Q Consensus 160 ~I~~~e~~~~l~~ 172 (207)
.|+.+|+..+..+
T Consensus 34 ~L~~~E~~~f~~A 46 (72)
T PRK10945 34 ELSDDELAVFYSA 46 (72)
T ss_pred cCCHHHHHHHHHH
Confidence 3555555555554
No 354
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=25.29 E-value=4.3e+02 Score=22.52 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhh---CCCCCCcccHHHHHHHHHHc
Q 028539 114 TIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERY---DRDRSGKIDLMELRDALYSI 173 (207)
Q Consensus 114 ~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~---D~d~~G~I~~~e~~~~l~~~ 173 (207)
+++++...+.. -....|+-+.+...+......+.+++.+ -+.....|+..|...++...
T Consensus 139 el~~l~~~LE~-~~G~~i~~e~L~~ai~~~n~~r~~~~~~~~l~~~~p~pitg~e~~~~~~~~ 200 (377)
T TIGR03190 139 EVQRFRVFLQT-LTGKEITDDMLRDALAVCDENRRLLRELFDYRKEADPKVTGVEALYASLTA 200 (377)
T ss_pred HHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcCHHHHHHHHHHh
Confidence 44444444444 4455677777777666544333333222 23444567766665555443
No 355
>PRK03968 DNA primase large subunit; Validated
Probab=25.12 E-value=1.5e+02 Score=25.48 Aligned_cols=44 Identities=16% Similarity=0.050 Sum_probs=24.2
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHH
Q 028539 90 RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 90 ~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
....|..+++..+-+..+..+..+++..+... ..|.|.+|+.++
T Consensus 118 ~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~-------y~i~~~df~~l~ 161 (399)
T PRK03968 118 NAIEIPEKDRKILERVRGRELPPEELEDLLPE-------YKIKWKDLLDLI 161 (399)
T ss_pred ccccccchhhhhhhhhcccccCHHHHHHHhhh-------ccccHHHHHHhc
Confidence 34455555666666666666666666555432 335555555544
No 356
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=25.11 E-value=1.6e+02 Score=24.55 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=12.5
Q ss_pred CCcccHHHHHHHHHhc
Q 028539 91 SGFIDENELQQALSSG 106 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~l 106 (207)
+-.|+.++|+..|+..
T Consensus 17 ~~yinYk~LKK~lK~~ 32 (310)
T KOG1161|consen 17 DKYINYKELKKLLKQY 32 (310)
T ss_pred hhhcCHHHHHHHHHHh
Confidence 4578888888888865
No 357
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.08 E-value=1.9e+02 Score=18.49 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=40.3
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
.+...+.+.+.+.|| ++..+|..+-. +... .-+. ++..|..|+ ++.|. .-+.+.|.++|..
T Consensus 8 ~v~~~~Wk~laR~LG--ls~~~I~~ie~-----~~~~--~~eq---~~~mL~~W~------~k~G~-~At~~~L~~aL~~ 68 (79)
T cd08784 8 EVPFDQHKRFFRKLG--LSDNEIKVAEL-----DNPQ--HRDR---VYELLRIWR------NKEGR-KATLNTLIKALKD 68 (79)
T ss_pred HCCHHHHHHHHHHcC--CCHHHHHHHHH-----cCCc--hHHH---HHHHHHHHH------hccCc-CcHHHHHHHHHHH
Confidence 567788888888887 55666666542 2222 1122 222222222 23443 3478889999998
Q ss_pred cCCCCCHHH
Q 028539 173 IGYAVPPSV 181 (207)
Q Consensus 173 ~g~~~~~~~ 181 (207)
+|.....+.
T Consensus 69 ~~~~~~Ae~ 77 (79)
T cd08784 69 LDQRRTAEK 77 (79)
T ss_pred cccHhHHHH
Confidence 886655443
No 358
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=25.04 E-value=2e+02 Score=25.78 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 028539 97 NELQQALS 104 (207)
Q Consensus 97 ~e~~~~l~ 104 (207)
..|..-|+
T Consensus 496 ~~LmaqIR 503 (569)
T KOG3671|consen 496 DALMAQIR 503 (569)
T ss_pred HHHHHHHH
Confidence 33444344
No 359
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.53 E-value=98 Score=31.87 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=24.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHcC
Q 028539 145 QWRAIFERYDRDRSGKIDLMELRDALYSIG 174 (207)
Q Consensus 145 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g 174 (207)
+..++|+.+|.+..|.|...++..+++.+.
T Consensus 1418 ~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ 1447 (1592)
T KOG2301|consen 1418 KFYEAWDEFDPEATQEIPYSDLSAFLRSLD 1447 (1592)
T ss_pred HHHHHHHhcChhhheeeeHhhHHHHHHhcC
Confidence 344688899999999999999999998753
No 360
>PHA02986 hypothetical protein; Provisional
Probab=24.46 E-value=2.3e+02 Score=20.26 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=31.8
Q ss_pred CCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028539 127 DSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (207)
Q Consensus 127 ~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~ 188 (207)
.+..|.|+-|..+|... +-..+...+..+|++.+|..+-..+......-+...
T Consensus 23 ~~nei~~k~FsNLCkef---------i~~~k~~~~ik~~IK~ill~iP~sm~~~~W~PIanl 75 (141)
T PHA02986 23 NDNEISFKYFSNLCKEF---------ISNKKKTTLIKEEIKKILLEIPDSMISQVWYPIANL 75 (141)
T ss_pred ccchhhHHHHHHHHHHH---------HhcCCCchhHHHHHHHHHHhCChhHHHHHHHHHHhh
Confidence 35778888888877621 212333456778899988876555544443333333
No 361
>PHA03155 hypothetical protein; Provisional
Probab=24.34 E-value=2.6e+02 Score=19.64 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=51.0
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH----H--HHHHHHHhhhCCCCCCcccHHHH
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC----L--GQWRAIFERYDRDRSGKIDLMEL 166 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~----l--~~~~~~F~~~D~d~~G~I~~~e~ 166 (207)
..+.+||..-|..| .+.+..+++-+..-.. ..+..|+-.+=-.++.. + ...+.+-.....+-.+.++.+|+
T Consensus 7 ~~tvEeLaaeL~kL--~~ENK~LKkkl~~~~~-p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk~~~~~vTk~q~ 83 (115)
T PHA03155 7 CADVEELEKELQKL--KIENKALKKKLLQHGN-PEDELLTPAQKDAIINSLVNKLTKKAEEKIRERVLKDLLPLVSKNQC 83 (115)
T ss_pred CCCHHHHHHHHHHH--HHHHHHHHHHHHccCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 45677777777766 3555566555544333 45677776654333322 1 23344444455555577888999
Q ss_pred HHHHHHcCC--CCCHHHHHH
Q 028539 167 RDALYSIGY--AVPPSVLQL 184 (207)
Q Consensus 167 ~~~l~~~g~--~~~~~~~~~ 184 (207)
.++|..+.+ .++.++.+.
T Consensus 84 ~~al~~lt~RidvSmde~~~ 103 (115)
T PHA03155 84 MEAIADIKYRIDVSIDESQD 103 (115)
T ss_pred HHHHhcCeeeEEecccchhc
Confidence 999887644 344444433
No 362
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=24.14 E-value=88 Score=22.31 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=15.5
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHh
Q 028539 81 RSFEMVDRDRSGFIDENELQQALSS 105 (207)
Q Consensus 81 ~~F~~~D~d~~G~I~~~e~~~~l~~ 105 (207)
=++..+|.+++|.|..-.|+.+|..
T Consensus 101 ~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 101 WLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3456778888888888888777654
No 363
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=24.12 E-value=48 Score=21.55 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCCCccchh
Q 028539 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDNRSGSRKLGLSFD 203 (207)
Q Consensus 158 ~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~~g~I~~~ 203 (207)
+|+=..-||-.+|..+|-.+-+..++-|++.+.. ..|.+.|+
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR----~tgF~E~~ 79 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSMTR----STGFMEFE 79 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhc----ccCceecC
Confidence 4555555788888887866667777888888776 44444443
No 364
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.11 E-value=5.8e+02 Score=23.63 Aligned_cols=36 Identities=11% Similarity=-0.048 Sum_probs=25.4
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccH
Q 028539 128 SLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDL 163 (207)
Q Consensus 128 ~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~ 163 (207)
...+.+++...-...|..++.-|..+...=+.+++.
T Consensus 547 ~~~~~~e~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (620)
T PRK14954 547 CRKFSYEELMQDAALLSKEIESFYGIPLKLQIRYDA 582 (620)
T ss_pred cccccHHHHHhHHHHHHHHHHHHhcCCceEEEEEeh
Confidence 356788888887777888888888876554444443
No 365
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=24.04 E-value=81 Score=19.23 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=16.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHH
Q 028539 161 IDLMELRDALYSIGYAVPPSVLQLLM 186 (207)
Q Consensus 161 I~~~e~~~~l~~~g~~~~~~~~~~l~ 186 (207)
++..+..+++..+| |++..+.-.|
T Consensus 30 ~~~~~r~~la~~lg--l~~~vvKVWf 53 (58)
T TIGR01565 30 KRREEVREFCEEIG--VTRKVFKVWM 53 (58)
T ss_pred CCHHHHHHHHHHhC--CCHHHeeeec
Confidence 77777778888777 6666555443
No 366
>PF09687 PRESAN: Plasmodium RESA N-terminal; InterPro: IPR019111 The short, four-helical domain first identified in the Plasmodium export proteins PHISTa and PHISTc [] has been extended to become this six-helical PRESAC domain identified in the P. falciparum-specific RESA-type (Ring-infected erythrocyte surface antigen) proteins in association with the DnaJ domain. Overall, at least 67 proteins have been detected in P. falciparum with complete copies of the PRESAC domain. No versions of this domain were detected in other apicomplexan genera, suggesting that the domain was 'invented' after the divergence of the lineage leading to the genus Plasmodium undergoing a dramatic proliferation only in P. falciparum. A secondary structure-prediction derived from the multiple alignment of the PRESAC family reveals that it is composed of an all-helical fold with six conserved helical segments. There is some evidence it might localise to membranes [].
Probab=24.04 E-value=2.4e+02 Score=19.20 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=23.0
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 028539 92 GFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 92 G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~ 124 (207)
..++.+|+...+..++..++..++..+|..+-.
T Consensus 4 ~~lt~~ei~~~i~~l~~~~~k~~m~~iw~~~~~ 36 (129)
T PF09687_consen 4 KNLTDEEINKKINSLGEFVSKKDMYNIWNQVMK 36 (129)
T ss_pred hHhhHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 356677777888877777777777776665543
No 367
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=23.85 E-value=1.8e+02 Score=21.72 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH---------HHHHHHHHHHHHhhhCCCCCCcccHH
Q 028539 94 IDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD---------LWSCLGQWRAIFERYDRDRSGKIDLM 164 (207)
Q Consensus 94 I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~---------~~~~l~~~~~~F~~~D~d~~G~I~~~ 164 (207)
++..||..+|+..-..++..++..+-..+.. +. ..|. .++.. ++....+++..++.-..-.+..++.+
T Consensus 1 m~~~eL~~~Lk~~~~~~si~DL~~i~~~l~~-~~-~~lp-~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~~~~~~~d~~ 77 (163)
T PF09888_consen 1 MTKGELLEILKEEASNYSIYDLMKIRGFLEK-DI-KYLP-PEYREKYIESFFEYFFGTYHEIKNMYRSGSFIEDFEIDEE 77 (163)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HH-HhCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCHH
Confidence 4567777777766556666666655544443 21 1111 12222 11222344443333333334457888
Q ss_pred HHHHHHHHc
Q 028539 165 ELRDALYSI 173 (207)
Q Consensus 165 e~~~~l~~~ 173 (207)
+|++++..+
T Consensus 78 ~~~~~~~~i 86 (163)
T PF09888_consen 78 EFKEFLNMI 86 (163)
T ss_pred HHHHHHHHH
Confidence 888888754
No 368
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.84 E-value=1.3e+02 Score=15.85 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=6.8
Q ss_pred CCcCHHHHHHHHHH
Q 028539 129 LRIGPKEFADLWSC 142 (207)
Q Consensus 129 g~I~~~eF~~~~~~ 142 (207)
+.|+++|++.+...
T Consensus 3 ~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 3 GTISKEEYLDMASR 16 (33)
T ss_pred ceecHHHHHHHHHH
Confidence 44555555554443
No 369
>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.72 E-value=2.3e+02 Score=21.20 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=35.3
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 95 DENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 95 ~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
+.+++..-|.++|+++....++.++.. . +-...++|.|-..++.+
T Consensus 38 d~e~Vn~qLdkMGyNiG~RLiedFLAk--s-~vpRC~dfretaevlak 82 (183)
T KOG3330|consen 38 DPEDVNKQLDKMGYNIGIRLIEDFLAK--S-NVPRCVDFRETAEVLAK 82 (183)
T ss_pred CHHHHHHHHHhccchhhHHHHHHHHhh--c-CCchhhhHHHHHHHHHH
Confidence 577788888899999999888888877 3 55677888887776653
No 370
>PRK04974 glycerol-3-phosphate acyltransferase; Validated
Probab=23.68 E-value=5.8e+02 Score=24.58 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=27.8
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 151 ERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 151 ~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
..++++.+|.+..++...++.....-++.+....|-....
T Consensus 771 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~i~~~~~ 810 (818)
T PRK04974 771 GYIRDDDSGDLEFEETLEIYAILKRLLSPEVRLTIEQVAQ 810 (818)
T ss_pred CCCCcccCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 3447778899999999888887665677765555544443
No 371
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=23.57 E-value=2.2e+02 Score=22.15 Aligned_cols=43 Identities=19% Similarity=0.052 Sum_probs=25.5
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH
Q 028539 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (207)
Q Consensus 89 d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~ 138 (207)
|=||.|+.++....|..- +...++..|+.. -.++.|++.+...
T Consensus 9 DFDGTITl~Ds~~~itdt---f~~~e~k~l~~~----vls~tiS~rd~~g 51 (220)
T COG4359 9 DFDGTITLNDSNDYITDT---FGPGEWKALKDG----VLSKTISFRDGFG 51 (220)
T ss_pred cCCCceEecchhHHHHhc---cCchHHHHHHHH----HhhCceeHHHHHH
Confidence 457889988887777642 112233344333 3357788877554
No 372
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=23.51 E-value=2e+02 Score=18.20 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=23.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 159 GKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 159 G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
..-+-+||.+.|...|+.++...+..-++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 35588999999999999999999998888875
No 373
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=23.45 E-value=2.6e+02 Score=19.39 Aligned_cols=48 Identities=8% Similarity=0.189 Sum_probs=30.9
Q ss_pred HHHcCCCCCcccHHHHHHHHHhc----------CCCCCHHHHHHHHHHhcCCCCCCCcC
Q 028539 84 EMVDRDRSGFIDENELQQALSSG----------YQRFSLSTIRLLMFLFRNPHDSLRIG 132 (207)
Q Consensus 84 ~~~D~d~~G~I~~~e~~~~l~~l----------g~~~~~~~~~~l~~~~d~~~~~g~I~ 132 (207)
+++|...+-+|+.+++..++..- |-+++...+-.++..-.. .+...++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~-~g~~~lp 67 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEES-GGEPVLS 67 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHh-CCCCCCC
Confidence 36788889999999999988832 445555555555554444 4433333
No 374
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=23.45 E-value=2e+02 Score=19.21 Aligned_cols=54 Identities=13% Similarity=-0.021 Sum_probs=23.7
Q ss_pred CCCCChhHHHHHHHHHcCC--CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 028539 71 FPPGTHPDVIRSFEMVDRD--RSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d--~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~ 124 (207)
|.++++..++.+.+..-.+ .++-|+.+.|..+-+.+-..-..+++..+++.|.-
T Consensus 4 L~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY 59 (89)
T PF08356_consen 4 LQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGY 59 (89)
T ss_pred CCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCC
Confidence 4445555555555443222 23445555554443322222233444455555544
No 375
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=23.34 E-value=6e+02 Score=23.55 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=18.2
Q ss_pred CcccHHHHHHHHHHcC---C--CCCHHHHHHHHHH
Q 028539 159 GKIDLMELRDALYSIG---Y--AVPPSVLQLLMDK 188 (207)
Q Consensus 159 G~I~~~e~~~~l~~~g---~--~~~~~~~~~l~~~ 188 (207)
-.|+.+..+++|+.+. . .++.+.|...+..
T Consensus 501 ~~itl~la~~vL~~~~~~~~~~~it~d~I~~~Va~ 535 (617)
T PRK14086 501 QPVDLGLTEIVLRDLIPEDSAPEITAAAIMAATAD 535 (617)
T ss_pred CCCCHHHHHHHHHHhhccccCCcCCHHHHHHHHHH
Confidence 3488888888887652 1 3565555544443
No 376
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.20 E-value=1.8e+02 Score=23.12 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=33.5
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 153 YDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 153 ~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
.--+++|.+....|..-++.+.-+++..|+.++-+++..
T Consensus 160 ~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~A 198 (224)
T PF13829_consen 160 IVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLRA 198 (224)
T ss_pred EecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999988887753
No 377
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.14 E-value=3.4e+02 Score=20.53 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=57.1
Q ss_pred hHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH--HH--HHHH----
Q 028539 77 PDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC--LG--QWRA---- 148 (207)
Q Consensus 77 ~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~--l~--~~~~---- 148 (207)
..|.++...+| |-.-.|-..=....|+..|+..+..-|.+|+.+.-. -|+.-+.. ++ ++|.
T Consensus 71 ~~l~efl~qLd-dYtP~IPDavt~~yL~~aGf~~~D~rv~RLvsLaAQ----------KfvSDIa~DA~Q~~k~r~~~~~ 139 (176)
T KOG3423|consen 71 THLEEFLAQLD-DYTPTIPDAVTDHYLKKAGFQTSDPRVKRLVSLAAQ----------KFVSDIANDALQHSKIRTKTAI 139 (176)
T ss_pred hHHHHHHHHHh-cCCCCCcHHHHHHHHHhcCCCcCcHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhcccccc
Confidence 45666666665 456677777778888888988888888888877654 45553332 11 1111
Q ss_pred -HHhhhCCCCCCcccHHHHHHHHHHcCCCCC
Q 028539 149 -IFERYDRDRSGKIDLMELRDALYSIGYAVP 178 (207)
Q Consensus 149 -~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~ 178 (207)
-=+..-+++.=.|+.++|..+|.+.|+++.
T Consensus 140 ~~~k~~~kdkK~tLtmeDL~~AL~EyGinv~ 170 (176)
T KOG3423|consen 140 GKDKKQAKDKKYTLTMEDLSPALAEYGINVK 170 (176)
T ss_pred ccccccccccceeeeHHHHHHHHHHhCcccC
Confidence 011123344456888888888888887654
No 378
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=23.14 E-value=2.1e+02 Score=18.07 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=30.4
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 148 AIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 148 ~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
.+|-.+=....+.|...+|.++|..+| +++.-+..-+..+-.
T Consensus 8 tl~Gdy~~~~g~~i~~~~Li~ll~~~G--v~e~avR~alsRl~~ 49 (70)
T PF07848_consen 8 TLLGDYLRPRGGWIWVASLIRLLAAFG--VSESAVRTALSRLVR 49 (70)
T ss_dssp HHHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCceeHHHHHHHHHHcC--CChHHHHHHHHHHHH
Confidence 445444556678999999999999988 888888888877754
No 379
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.08 E-value=3.1e+02 Score=26.38 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=32.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028539 131 IGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYS 172 (207)
Q Consensus 131 I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 172 (207)
=+|.+|+.+...+..++..|+.-+.+-.|..+.. +...++.
T Consensus 213 ~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~-l~n~i~~ 253 (934)
T KOG2347|consen 213 DNFDSFISCKDTLDNIHQKLERGEEDPHGSGTTK-LENCIKN 253 (934)
T ss_pred cchhHHHHHHHHHHHHHHHHhccccCccchHHHH-HHHHHHH
Confidence 3578999999999999999999877777777766 6666664
No 380
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=22.92 E-value=1.3e+02 Score=18.45 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=18.1
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHcCCC
Q 028539 147 RAIFERYDRDRSGKIDLMELRDALYSIGYA 176 (207)
Q Consensus 147 ~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~ 176 (207)
.++++.++.+...-|+.+|..+-++..|.+
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 345566654444556777777766666653
No 381
>PF13276 HTH_21: HTH-like domain
Probab=22.81 E-value=1.8e+02 Score=17.24 Aligned_cols=34 Identities=18% Similarity=0.009 Sum_probs=26.1
Q ss_pred CCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHhcC
Q 028539 91 SGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 91 ~G~I~~~e~~~~l~~l-g~~~~~~~~~~l~~~~d~ 124 (207)
.+..-..-+...|... ++.++...|..|+...+-
T Consensus 18 ~~~yG~rri~~~L~~~~~~~v~~krV~RlM~~~gL 52 (60)
T PF13276_consen 18 KPTYGYRRIWAELRREGGIRVSRKRVRRLMREMGL 52 (60)
T ss_pred CCCeehhHHHHHHhccCcccccHHHHHHHHHHcCC
Confidence 3466777778888877 578999999999887654
No 382
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.70 E-value=3.6e+02 Score=20.79 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=24.7
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 150 FERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 150 F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
-..|..|+.|.|+...+..+.+- .+.++.+.+.+..+.
T Consensus 125 ~~af~~dk~G~l~~~rIl~Lrrl---~i~D~~w~~am~aI~ 162 (195)
T PF11363_consen 125 NRAFQVDKEGNLNTSRILGLRRL---EIDDERWQEAMDAIK 162 (195)
T ss_pred HHHHhcCCCCCcCHHHHHHHHhc---cCCCHHHHHHHHHHH
Confidence 34566778888888877766552 355666666666554
No 383
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=22.61 E-value=2.3e+02 Score=18.49 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCC
Q 028539 97 NELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYA 176 (207)
Q Consensus 97 ~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~ 176 (207)
.+.+.+.+.|| ++..+|..+-...-. .+ .+ .++..|..|+. ..+ ..-+.+.|.++|+.++..
T Consensus 14 ~~Wk~laR~LG--lse~~Id~i~~~~~~-----~~-~e---q~~~mL~~W~~------~~g-~~At~~~L~~aL~~~~l~ 75 (86)
T cd08306 14 RDWRKLARKLG--LSETKIESIEEAHPR-----NL-RE---QVRQSLREWKK------IKK-KEAKVADLIKALRDCQLN 75 (86)
T ss_pred hhHHHHHHHcC--CCHHHHHHHHHHCCC-----CH-HH---HHHHHHHHHHH------hHC-cchHHHHHHHHHHHcCcH
Confidence 45667777775 677777766553321 11 11 12222323332 222 335788999999998865
Q ss_pred CCHHHHHH
Q 028539 177 VPPSVLQL 184 (207)
Q Consensus 177 ~~~~~~~~ 184 (207)
...+.++.
T Consensus 76 ~~ad~i~~ 83 (86)
T cd08306 76 LVADLVEE 83 (86)
T ss_pred HHHHHHHH
Confidence 55554444
No 384
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=22.56 E-value=3.5e+02 Score=20.47 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=33.5
Q ss_pred CCCCCCCCChhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 028539 67 GHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQ 108 (207)
Q Consensus 67 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~ 108 (207)
.+..++++-..++.++|..+-.+ +.-+..++|..+++.|.+
T Consensus 4 ~f~ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~I 44 (170)
T PF08730_consen 4 QFEKIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQI 44 (170)
T ss_pred ccccCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCC
Confidence 35578888899999999877654 778899999999998854
No 385
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=22.48 E-value=1.6e+02 Score=21.07 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=8.0
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 028539 159 GKIDLMELRDALYSIGYAVPPSVLQLLMD 187 (207)
Q Consensus 159 G~I~~~e~~~~l~~~g~~~~~~~~~~l~~ 187 (207)
|..+.+.|.++|...| +++++++..++
T Consensus 119 g~~~~~~f~~~L~~~g--~t~~~~~~~lr 145 (154)
T PF13624_consen 119 GKFDKEAFEEFLKQQG--MTEEEFKEELR 145 (154)
T ss_dssp ----HHHHHHHHH----------------
T ss_pred CCCCHHHHHHHHHHhh--ccccccchhhh
Confidence 7778888999888776 56666655444
No 386
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations
Probab=22.41 E-value=5.3e+02 Score=22.57 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=35.9
Q ss_pred CCCCChhHHHHHHHHHcCCCCCccc--HHHHHHHHHhcCCCCCHHHHHH---HHHHhcCCCCCCCcCHHHHHHHH
Q 028539 71 FPPGTHPDVIRSFEMVDRDRSGFID--ENELQQALSSGYQRFSLSTIRL---LMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 71 l~~~~~~~l~~~F~~~D~d~~G~I~--~~e~~~~l~~lg~~~~~~~~~~---l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
+++.+..-...+...+| .+|++. .+++... ++ ++.+++.. ++..++. .|-|.-++.|++.+-
T Consensus 91 ~~~~~~~ia~~iI~~LD--~~GyL~~~~~eia~~---l~--~~~~~ve~~l~~iq~leP-~GIgAr~L~EcLllQ 157 (429)
T TIGR02395 91 FTERDRKIALYIIDNLD--EDGYLEIDLEEIADE---LE--VSEEEVEKVLELIQRLDP-AGVGARDLQECLLLQ 157 (429)
T ss_pred CCHHHHHHHHHHHHhCC--CCCCCCCCHHHHHHH---cC--CCHHHHHHHHHHHhcCCC-CccCcCCHHHHHHHH
Confidence 44444433444444555 456665 5555443 43 45666655 4455666 888888999987654
No 387
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.39 E-value=2.4e+02 Score=27.01 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=2.9
Q ss_pred CCHHHHHH
Q 028539 110 FSLSTIRL 117 (207)
Q Consensus 110 ~~~~~~~~ 117 (207)
++.+.+..
T Consensus 198 id~eAL~l 205 (830)
T PRK07003 198 FEPQALRL 205 (830)
T ss_pred CCHHHHHH
Confidence 33333333
No 388
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.39 E-value=2.9e+02 Score=19.49 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=30.3
Q ss_pred CCCCCcCHHHHHH-HHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028539 126 HDSLRIGPKEFAD-LWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDK 188 (207)
Q Consensus 126 ~~~g~I~~~eF~~-~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~ 188 (207)
...|..-|++|.. .+..|++-+. ||..+|..+...-+.+|++.++..
T Consensus 65 ~~sGN~AFD~YR~~tL~RLEeEq~----------------eF~~Fl~rLR~AKDk~EFD~FM~~ 112 (115)
T PF11014_consen 65 RSSGNAAFDEYREDTLRRLEEEQR----------------EFEDFLERLRRAKDKEEFDQFMAE 112 (115)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhhhHHHHHHHHHh
Confidence 5578888999987 3444554444 666666665555566777766653
No 389
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=22.37 E-value=26 Score=31.44 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHcCCCCCHHHHHHHHHH
Q 028539 169 ALYSIGYAVPPSVLQLLMDK 188 (207)
Q Consensus 169 ~l~~~g~~~~~~~~~~l~~~ 188 (207)
+|+++-+....++++.||+.
T Consensus 179 ilREIpettp~e~Vk~lf~~ 198 (684)
T KOG2591|consen 179 ILREIPETTPIEVVKALFKG 198 (684)
T ss_pred EEeecCCCChHHHHHHHhcc
Confidence 45667777888888888876
No 390
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=22.23 E-value=2e+02 Score=17.62 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 028539 128 SLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 169 (207)
Q Consensus 128 ~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~ 169 (207)
+|.|...++...+. ..|..||...=|+-+..+|.+.
T Consensus 21 ~g~v~ls~l~~~~~------~~~~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 21 DGWVSLSQLGQEYK------KKYPDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp TSSEEHHHHHHHHH------HHHTT--TCCTTSSSHHHHHHT
T ss_pred CceEEHHHHHHHHH------HHCCCCCccccCCCcHHHHHHh
Confidence 45677776666554 4456667776777776665543
No 391
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.10 E-value=1.2e+02 Score=22.77 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=37.8
Q ss_pred HhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHHHH----cCCC-CCHHHHHHHHHHHc
Q 028539 121 LFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYS----IGYA-VPPSVLQLLMDKYD 190 (207)
Q Consensus 121 ~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l~~----~g~~-~~~~~~~~l~~~~d 190 (207)
+++. ...-.|++++...++..- +-|.+.|.....-|++.=|.+++-+ -|.+ ++-.-++.||..+.
T Consensus 20 LYnT-~TSTYVTL~dla~mVk~g----edF~V~DAKsgeDiT~sVLtQIIfEeE~k~G~~llpi~fLrQlI~fYG 89 (193)
T COG5394 20 LYNT-GTSTYVTLEDLAQMVKEG----EDFRVQDAKSGEDITHSVLTQIIFEEENKGGQNLLPISFLRQLISFYG 89 (193)
T ss_pred hccc-CCceeeeHHHHHHHHhcC----CceEEeeccccchhhHHHHHHHHHHHhccCCCccccHHHHHHHHHHHh
Confidence 3444 445667777766655432 3466777766666776666665542 2332 45566667776664
No 392
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=21.88 E-value=1.8e+02 Score=26.11 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCC--CCCCcCHHHHHHHHHH
Q 028539 96 ENELQQALSSGYQRFSLSTIRLLMFLFRNPH--DSLRIGPKEFADLWSC 142 (207)
Q Consensus 96 ~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~--~~g~I~~~eF~~~~~~ 142 (207)
..-++..|+.+|+.++++++..++..+.. - ..+.|+-+|+..++..
T Consensus 429 ~~av~~~l~~lG~~~~~~~~~~l~~~vk~-~a~~~~~l~~~el~~i~~~ 476 (503)
T PLN03228 429 RHAVKDRLKELGYELDDEKLNEVFSRFRD-LTKEKKRITDADLKALVVN 476 (503)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHcCCCCCHHHHHHHHhc
Confidence 34556667778888887777777666543 1 1234555555555443
No 393
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=21.88 E-value=1.7e+02 Score=16.64 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 163 LMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 163 ~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
.+|...+|..+| .++.++..+++...
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~ 28 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLL 28 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhh
Confidence 367888888888 66788888888875
No 394
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.85 E-value=3.8e+02 Score=20.71 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=8.5
Q ss_pred HHHHhcCCCCCCCcCHHHHH
Q 028539 118 LMFLFRNPHDSLRIGPKEFA 137 (207)
Q Consensus 118 l~~~~d~~~~~g~I~~~eF~ 137 (207)
+...|.. |..|.|+....+
T Consensus 124 V~~af~~-dk~G~l~~~rIl 142 (195)
T PF11363_consen 124 VNRAFQV-DKEGNLNTSRIL 142 (195)
T ss_pred HHHHHhc-CCCCCcCHHHHH
Confidence 3333444 445555544433
No 395
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=21.77 E-value=12 Score=30.35 Aligned_cols=13 Identities=0% Similarity=-0.023 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHc
Q 028539 178 PPSVLQLLMDKYD 190 (207)
Q Consensus 178 ~~~~~~~l~~~~d 190 (207)
..++.+..|..|.
T Consensus 113 ~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 113 NKEDAENAIQQMN 125 (321)
T ss_pred chHHHHHHHHHhC
Confidence 3455555555554
No 396
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=21.72 E-value=4.2e+02 Score=22.63 Aligned_cols=68 Identities=24% Similarity=0.267 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH---H-------HHHHHHHhhhCCCCCCcccHHHHHH
Q 028539 99 LQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC---L-------GQWRAIFERYDRDRSGKIDLMELRD 168 (207)
Q Consensus 99 ~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~---l-------~~~~~~F~~~D~d~~G~I~~~e~~~ 168 (207)
|..+|+.+.-....++|..++..+-. +=. +-+.|...|.| + +++..+|+..=.. |.-..+||++
T Consensus 106 lsECl~Li~eGcp~eei~~~L~~li~-~IP---~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a--gAqPieElR~ 179 (353)
T PF15297_consen 106 LSECLNLIEEGCPKEEILATLSDLIK-NIP---DAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA--GAQPIEELRH 179 (353)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh-cCc---hHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc--CCChHHHHHH
Confidence 44455555555666677666664443 211 22344444433 2 4566666655333 5568889988
Q ss_pred HHHH
Q 028539 169 ALYS 172 (207)
Q Consensus 169 ~l~~ 172 (207)
++..
T Consensus 180 ~l~d 183 (353)
T PF15297_consen 180 VLVD 183 (353)
T ss_pred HHHH
Confidence 6654
No 397
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.62 E-value=68 Score=24.47 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH
Q 028539 76 HPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMF 120 (207)
Q Consensus 76 ~~~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~ 120 (207)
.+.++++|..||.+.--.++.+++.+++..-++--+..-|+.++.
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 446788999999888888899999999987766555555554443
No 398
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=21.62 E-value=5.2e+02 Score=23.42 Aligned_cols=92 Identities=14% Similarity=0.276 Sum_probs=50.1
Q ss_pred HcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--------------CCCCCCcCHHHHHHHHHHHHHHHHHHh
Q 028539 86 VDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRN--------------PHDSLRIGPKEFADLWSCLGQWRAIFE 151 (207)
Q Consensus 86 ~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~--------------~~~~g~I~~~eF~~~~~~l~~~~~~F~ 151 (207)
.|.|--|-|+..+|+.+|+-....+....++.++..--. ++.+--++|+|.- ++. .+|++
T Consensus 534 ADINPIGgISK~DLr~Fl~~a~~~~~lp~L~~il~a~pTAELePl~~g~~~QtDE~dmGmTY~ELs-v~G---rlRK~-- 607 (706)
T KOG2303|consen 534 ADINPIGGISKTDLRRFLQYAKEKFGLPALQSILDAPPTAELEPLTDGDYSQTDEADMGMTYAELS-VFG---RLRKV-- 607 (706)
T ss_pred cccCCccCccHHHHHHHHHHHHHhcCchHHHHHhcCCCcccccccccCcccccchhhhCccHHHHH-HhH---hhccc--
Confidence 345667999999999998843323333333333322111 0123335565532 111 12222
Q ss_pred hhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 152 RYDRDRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 152 ~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
.+-| ...-|.++|..+|..++..++.+-+++|
T Consensus 608 ----~~cG--PysMF~kLl~~W~~klsp~qvaEKVk~F 639 (706)
T KOG2303|consen 608 ----SKCG--PYSMFCKLLHQWGDKLSPRQVAEKVKRF 639 (706)
T ss_pred ----cccC--cHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 2234 4567899999999999887766544443
No 399
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=21.61 E-value=3.1e+02 Score=19.62 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=14.9
Q ss_pred hhhCCCCCCcccHHHHHHHHHHcCC
Q 028539 151 ERYDRDRSGKIDLMELRDALYSIGY 175 (207)
Q Consensus 151 ~~~D~d~~G~I~~~e~~~~l~~~g~ 175 (207)
+..+....-.|..+.+..+|..+++
T Consensus 56 e~ce~EaKKTIa~EHviKALenLef 80 (148)
T COG5150 56 EACEEEAKKTIAYEHVIKALENLEF 80 (148)
T ss_pred HHHHHHHhccccHHHHHHHHHhccH
Confidence 3444555556777776666666553
No 400
>PRK14136 recX recombination regulator RecX; Provisional
Probab=21.58 E-value=4.8e+02 Score=21.80 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Q 028539 78 DVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSC 142 (207)
Q Consensus 78 ~l~~~F~~~D~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~ 142 (207)
.+..++..+-. -.-+..||..-|...+ +..+.|..++..+.. .+.|+=..|...+..
T Consensus 164 lk~kAL~lLSr---ReRSe~ELr~KL~kkG--~~ee~IE~VIerLke---~gYLDDeRFAesyVr 220 (309)
T PRK14136 164 LKGRALGYLSR---REYSRAELARKLAPYA--DESDSVEPLLDALER---EGWLSDARFAESLVH 220 (309)
T ss_pred HHHHHHHHhhc---ccccHHHHHHHHHHcC--CCHHHHHHHHHHHHH---cCCcCHHHHHHHHHH
Confidence 34455555543 2557889999888774 677889898888865 588999999887763
No 401
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=21.43 E-value=2.8e+02 Score=19.06 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHH
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFAD 138 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~ 138 (207)
.||.+.+..+|+..|+......+..+...+.. .+.++.+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~g------k~i~eli~ 55 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALEG------VNIEEAIK 55 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC------CCHHHHHH
Confidence 89999999999999999988888888888753 45566554
No 402
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=21.38 E-value=2e+02 Score=20.23 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=18.7
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 158 SGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 158 ~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
.|.++.+++.+-+..-+-.++..++..++..+.
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~~ 58 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNALK 58 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 456666666555543355566666665555543
No 403
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=21.16 E-value=2.7e+02 Score=18.65 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=44.1
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHH
Q 028539 89 DRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRD 168 (207)
Q Consensus 89 d~~G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~ 168 (207)
..++.|+..++...+ .++......|-..+.. ..|+-.-+..++. .+.-..|.++.-.|+.+.+.+
T Consensus 27 ~~Na~l~~~~l~~~~-----~l~~~~~~~l~~~~~~----~~lS~R~~~rilr------vARTIADL~~~~~I~~~hi~E 91 (96)
T PF13335_consen 27 KCNAQLPGEELRKYC-----PLSSEAKKLLEQAAEK----LNLSARGYHRILR------VARTIADLEGSERITREHIAE 91 (96)
T ss_pred CccccCCHHHHHhHc-----CCCHHHHHHHHHHHHH----cCcCHHHHHHHHH------HHHHHHhHcCCCCCCHHHHHH
Confidence 346788888877653 4445444444444443 4456555554443 666777889999999998888
Q ss_pred HHH
Q 028539 169 ALY 171 (207)
Q Consensus 169 ~l~ 171 (207)
++.
T Consensus 92 Al~ 94 (96)
T PF13335_consen 92 ALS 94 (96)
T ss_pred HHh
Confidence 764
No 404
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.95 E-value=99 Score=24.10 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=19.8
Q ss_pred HhhhCCCCCCcccHHHHHHHHHHc
Q 028539 150 FERYDRDRSGKIDLMELRDALYSI 173 (207)
Q Consensus 150 F~~~D~d~~G~I~~~e~~~~l~~~ 173 (207)
..-+|.|++|.++.+|+..+...+
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 446899999999999998887753
No 405
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=20.92 E-value=1.4e+02 Score=23.11 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=32.0
Q ss_pred CCCcCHHHHHHHHHHHHHHH---------HHHhhhCCCCCCcccHHHHHHHHHHcCCCC
Q 028539 128 SLRIGPKEFADLWSCLGQWR---------AIFERYDRDRSGKIDLMELRDALYSIGYAV 177 (207)
Q Consensus 128 ~g~I~~~eF~~~~~~l~~~~---------~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~ 177 (207)
...|+|..|-.+-..+.-+. .=++-||+-+-...|..+|+++|+..|..+
T Consensus 104 ~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 104 RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEE
Confidence 45666666655443322110 014557888888999999999999887543
No 406
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.87 E-value=1.5e+02 Score=15.60 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=13.9
Q ss_pred cccHHHHHHHHHHcCCCC
Q 028539 160 KIDLMELRDALYSIGYAV 177 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~~ 177 (207)
.++..||+..|+..|...
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467888999999887654
No 407
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=20.87 E-value=3.8e+02 Score=20.30 Aligned_cols=93 Identities=18% Similarity=0.127 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcC----CCCCCC--cCHHHHHHHHHHHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 028539 97 NELQQALSSGYQRFSLSTIRLLMFLFRN----PHDSLR--IGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 170 (207)
Q Consensus 97 ~e~~~~l~~lg~~~~~~~~~~l~~~~d~----~~~~g~--I~~~eF~~~~~~l~~~~~~F~~~D~d~~G~I~~~e~~~~l 170 (207)
+-|+.+|..+.+.-....|.+++..|-. .+.+.. ++.+.--.+...+--+. =..+..+...+++.++|.+.+
T Consensus 84 ~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLn--Tdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 84 QALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLN--TDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHh--HHhcCCccCCCCCHHHHHHHH
Confidence 3466666666666666677777666543 011111 13333222222111111 112344445689999999999
Q ss_pred HHc--CCCCCHHHHHHHHHHHcC
Q 028539 171 YSI--GYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 171 ~~~--g~~~~~~~~~~l~~~~d~ 191 (207)
+.. +..++++.++.++.....
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~ 184 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKN 184 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHh
Confidence 876 467999999999887654
No 408
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.71 E-value=2.2e+02 Score=19.52 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=24.7
Q ss_pred CCCCCcccHHH----HHHHHHHcCCCCCHHHHHHHHHHH
Q 028539 155 RDRSGKIDLME----LRDALYSIGYAVPPSVLQLLMDKY 189 (207)
Q Consensus 155 ~d~~G~I~~~e----~~~~l~~~g~~~~~~~~~~l~~~~ 189 (207)
..++|.--.++ +...|...|..+++++++.+++..
T Consensus 62 ~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 62 EGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33366656553 445667789999999999888764
No 409
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=20.70 E-value=3.4e+02 Score=19.72 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=53.0
Q ss_pred ChhHHHHHHH-HHcCCCCCcccHHHHHHHHHhc---CCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Q 028539 75 THPDVIRSFE-MVDRDRSGFIDENELQQALSSG---YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIF 150 (207)
Q Consensus 75 ~~~~l~~~F~-~~D~d~~G~I~~~e~~~~l~~l---g~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~~l~~~~~~F 150 (207)
..+++...|. -|++ ..|+.=|+++.|..+ .+-.+.+.|+.-++.... -+ +|-..+..++.++.-.
T Consensus 46 t~EEfd~ry~~yf~r---~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RR-vN-------Dfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNR---PEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRR-VN-------DFATAVRILEAIKDKC 114 (149)
T ss_pred cHHHHHHHHHHHcCc---ccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHH-hc-------cHHHHHHHHHHHHHhc
Confidence 4556655554 4443 357777888888864 345677888887777765 22 4555544333322211
Q ss_pred hhhCCCCCC--cccHHHHHHHHHHcCCCCCHH
Q 028539 151 ERYDRDRSG--KIDLMELRDALYSIGYAVPPS 180 (207)
Q Consensus 151 ~~~D~d~~G--~I~~~e~~~~l~~~g~~~~~~ 180 (207)
- +.+. .--.+|++-.|+++|..+.++
T Consensus 115 g----~~k~~Y~y~v~elkpvl~ELGI~t~Ee 142 (149)
T KOG4077|consen 115 G----AQKQVYPYYVKELKPVLNELGIPTPEE 142 (149)
T ss_pred c----cHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 1 1111 123578999999999876654
No 410
>PHA02771 hypothetical protein; Provisional
Probab=20.60 E-value=1.9e+02 Score=19.41 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=23.0
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcCHHHHHHHHH
Q 028539 95 DENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWS 141 (207)
Q Consensus 95 ~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~~~eF~~~~~ 141 (207)
..++|++++..+-- .+++.+|--.|. ..-.|+.+||..+..
T Consensus 2 ~f~~lK~ii~~fF~---d~~i~El~L~F~---~~l~ite~ey~ELi~ 42 (90)
T PHA02771 2 EFEELKSIIDKFFQ---DQTIIRINLMFN---KEIIVSYNQFEEIIK 42 (90)
T ss_pred ChHHHHHHHHHHhc---ccchHHhhhhcC---CCeEecHHHHHHHHc
Confidence 35677777776532 333434333343 345677777776664
No 411
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=20.57 E-value=1.9e+02 Score=25.58 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=28.6
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 028539 156 DRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYD 190 (207)
Q Consensus 156 d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d 190 (207)
.+.-.|+.+|++++.+-....++++|++.+.+.++
T Consensus 384 ~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dLn 418 (477)
T PRK12821 384 SKKQQLNKDELKKLARLVMFDLDDAELEKLQVEFK 418 (477)
T ss_pred cccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 33457999999999998888899999888777664
No 412
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=20.53 E-value=3.7e+02 Score=20.08 Aligned_cols=34 Identities=6% Similarity=0.080 Sum_probs=23.7
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Q 028539 156 DRSGKIDLMELRDALYSIGYAVPPSVLQLLMDKYDN 191 (207)
Q Consensus 156 d~~G~I~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~ 191 (207)
+....|+.+++..+++.+| +++..+..+-..|+.
T Consensus 111 ~~~~~V~~~~w~~l~~~~g--~~~~~m~~wh~~fe~ 144 (172)
T cd04790 111 KEQRLVTKEKWVAILKAAG--MDEADMRRWHIEFEK 144 (172)
T ss_pred cccccCCHHHHHHHHHHcC--CChHHHHHHHHHHHH
Confidence 3455788999999999888 666665555555543
No 413
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.40 E-value=1.8e+02 Score=19.93 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=24.4
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 028539 93 FIDENELQQALSSGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 93 ~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~ 124 (207)
.++.+|+...|+..+..++..++-+.+..+..
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 89999999999988888888888776666643
No 414
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=20.14 E-value=89 Score=16.93 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.2
Q ss_pred cccHHHHHHHHHHcCCC
Q 028539 160 KIDLMELRDALYSIGYA 176 (207)
Q Consensus 160 ~I~~~e~~~~l~~~g~~ 176 (207)
.++..||+.+|.+.|..
T Consensus 3 sltV~~Lk~iL~~~~I~ 19 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIE 19 (35)
T ss_dssp T--SHHHHHHHHHHT--
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 46778888888876653
No 415
>PF13592 HTH_33: Winged helix-turn helix
Probab=20.06 E-value=2e+02 Score=17.22 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=23.4
Q ss_pred CcccHHHHHHHHH-hcCCCCCHHHHHHHHHHhcC
Q 028539 92 GFIDENELQQALS-SGYQRFSLSTIRLLMFLFRN 124 (207)
Q Consensus 92 G~I~~~e~~~~l~-~lg~~~~~~~~~~l~~~~d~ 124 (207)
+..+..++...|. .+|..++...+..++..+.-
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G~ 36 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLGF 36 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcCC
Confidence 4566777777776 46777787777777776654
No 416
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=20.06 E-value=26 Score=26.92 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=25.7
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHH---HHHHhcCCCCCCCcCHHHHHHHH
Q 028539 88 RDRSGFIDENELQQALSSGYQRFSLSTIRL---LMFLFRNPHDSLRIGPKEFADLW 140 (207)
Q Consensus 88 ~d~~G~I~~~e~~~~l~~lg~~~~~~~~~~---l~~~~d~~~~~g~I~~~eF~~~~ 140 (207)
-|.+|+++. .+..+...++ ++.+.+.+ ++..++. -|-|.=++.|.+.+-
T Consensus 45 LD~~GyL~~-~~~eia~~l~--~~~~~v~~~l~~lQ~leP-~GigAr~l~EcLllQ 96 (194)
T PF04963_consen 45 LDDDGYLTE-SLEEIAEELG--VSEEEVEKALELLQSLEP-AGIGARDLQECLLLQ 96 (194)
T ss_dssp BTTTSTCSS--HHHHHHHCT--S-HHHHHHHHHHHHTTSS---TTTS-TTHHHHHH
T ss_pred CCCCCccCC-CHHHHHHHhC--CCHHHHHHHHHHHHcCCC-CccCcCCHHHHHHHH
Confidence 345676662 3444455554 55555554 4445565 788888888876543
No 417
>PRK01022 hypothetical protein; Provisional
Probab=20.05 E-value=3.7e+02 Score=20.21 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=45.4
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcC---HHHHHHHHHH--HHHHHHHH-hhhCCCCCCcccHHH
Q 028539 92 GFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIG---PKEFADLWSC--LGQWRAIF-ERYDRDRSGKIDLME 165 (207)
Q Consensus 92 G~I~~~e~~~~l~~lg~~~~~~~~~~l~~~~d~~~~~g~I~---~~eF~~~~~~--l~~~~~~F-~~~D~d~~G~I~~~e 165 (207)
+.++..||...|+......+..++..+-..+.. +. ..|. -+.++.-+.. +..+.++- ..+....+..|+.+.
T Consensus 2 ~~m~~~eL~~~Lke~~~~~si~Dl~~~~~~l~~-~~-~~lp~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~d~~~d~e~ 79 (167)
T PRK01022 2 GAMTKGELGEKLKEEALEYSIYDLMKARVFLEK-DI-KYLPEKYREKYIESFFEYLFGTLNEIKSGSFSEIEDPEIDEEE 79 (167)
T ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HH-HhCCHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcCccCCHHH
Confidence 356788888888877777887777776666654 21 2222 1233332211 12223332 244555567788887
Q ss_pred HHHHHHHc
Q 028539 166 LRDALYSI 173 (207)
Q Consensus 166 ~~~~l~~~ 173 (207)
|.+++..+
T Consensus 80 ~~~~~~~i 87 (167)
T PRK01022 80 FKEFLARI 87 (167)
T ss_pred HHHHHHHH
Confidence 77777653
No 418
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=20.05 E-value=6.6e+02 Score=22.72 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=14.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHcCC
Q 028539 166 LRDALYSIGYAVPPSVLQLLMDKYDNR 192 (207)
Q Consensus 166 ~~~~l~~~g~~~~~~~~~~l~~~~d~~ 192 (207)
|..+...+....+..++++.++.++.+
T Consensus 198 ~~si~ekindp~~pp~mraai~al~~~ 224 (624)
T PF05819_consen 198 WQSIQEKINDPSTPPDMRAAIEALDQD 224 (624)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHhhcC
Confidence 444444444455555666666666644
No 419
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.04 E-value=1.7e+02 Score=19.03 Aligned_cols=20 Identities=5% Similarity=0.262 Sum_probs=10.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHH
Q 028539 161 IDLMELRDALYSIGYAVPPSVL 182 (207)
Q Consensus 161 I~~~e~~~~l~~~g~~~~~~~~ 182 (207)
|....++++++.+| +++.+|
T Consensus 9 VP~~~wk~F~R~LG--Lsdn~I 28 (77)
T cd08815 9 VPARRWKEFVRTLG--LREAEI 28 (77)
T ss_pred CChHHHHHHHHHcC--CcHhHH
Confidence 55555666666655 444443
Done!