BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028540
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7CPQ1|NLPI_SALTY Lipoprotein NlpI OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=nlpI PE=3 SV=1
Length = 294
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + A R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNSAWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|Q8XG77|NLPI_SALTI Lipoprotein NlpI OS=Salmonella typhi GN=nlpI PE=3 SV=1
Length = 294
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + A R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNSAWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|Q57JI4|NLPI_SALCH Lipoprotein NlpI OS=Salmonella choleraesuis (strain SC-B67) GN=nlpI
PE=3 SV=1
Length = 294
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + A R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNSAWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|Q8IY49|PAQRA_HUMAN Monocyte to macrophage differentiation factor 2 OS=Homo sapiens
GN=MMD2 PE=1 SV=2
Length = 270
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 20/128 (15%)
Query: 87 GKLRKYLRWADYAMIATATV-----------CLSRALRDENPKMLMAASALALPIQPLMV 135
G ++RW + M + T+ C+ + PK A LP + +V
Sbjct: 129 GPWASHMRWLVWIMASVGTIYVFFFHERTGSCVQFLRGEACPK----AGTACLPARYKLV 184
Query: 136 SAVHTGMMEVAFAKRALNDPNLR--MAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHL 193
+ +M A L+ PN V LG VFF +D P+ HA WHL
Sbjct: 185 ELLCYVVMGFFPALVILSMPNTEGIWELVTGGVFYCLGMVFFKSDG---RIPFAHAIWHL 241
Query: 194 AAAVGVGT 201
A G GT
Sbjct: 242 FVAFGAGT 249
>sp|Q8R189|PAQRA_MOUSE Monocyte to macrophage differentiation factor 2 OS=Mus musculus
GN=Mmd2 PE=2 SV=1
Length = 247
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 170 LGGVFFIADDVFPETPYLHAAWHLAAAVGVGT 201
LG VFF +D P+ HA WHL A G GT
Sbjct: 198 LGMVFFKSDG---RIPFAHAIWHLFVAFGAGT 226
>sp|Q31W42|NLPI_SHIBS Lipoprotein NlpI OS=Shigella boydii serotype 4 (strain Sb227)
GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|P0AFB4|NLPI_SHIFL Lipoprotein NlpI OS=Shigella flexneri GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|P0AFB1|NLPI_ECOLI Lipoprotein NlpI OS=Escherichia coli (strain K12) GN=nlpI PE=1 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|P0AFB2|NLPI_ECOL6 Lipoprotein NlpI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|Q0TCU6|NLPI_ECOL5 Lipoprotein NlpI OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|D5D1H3|NLPI_ECOKI Lipoprotein NlpI OS=Escherichia coli O18:K1:H7 (strain IHE3034 /
ExPEC) GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|A1AG68|NLPI_ECOK1 Lipoprotein NlpI OS=Escherichia coli O1:K1 / APEC GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|B1XGX5|NLPI_ECODH Lipoprotein NlpI OS=Escherichia coli (strain K12 / DH10B) GN=nlpI
PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|C4ZSQ4|NLPI_ECOBW Lipoprotein NlpI OS=Escherichia coli (strain K12 / MC4100 / BW2952)
GN=nlpI PE=2 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|C6EH62|NLPI_ECOBD Lipoprotein NlpI OS=Escherichia coli (strain B / BL21-DE3) GN=nlpI
PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|E4P9W4|NLPI_ECO8N Lipoprotein NlpI OS=Escherichia coli O83:H1 (strain NRG 857C /
AIEC) GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|P0AFB3|NLPI_ECO57 Lipoprotein NlpI OS=Escherichia coli O157:H7 GN=nlpI PE=2 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
>sp|B7NDE9|NLPI_ECOLU Lipoprotein NlpI OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 89 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 148
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 149 KRALND 154
RAL D
Sbjct: 53 SRALTD 58
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,501,824
Number of Sequences: 539616
Number of extensions: 2486228
Number of successful extensions: 8190
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 8189
Number of HSP's gapped (non-prelim): 23
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)