Query 028540
Match_columns 207
No_of_seqs 121 out of 1071
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15087 hemolysin; Provisiona 100.0 1.6E-38 3.5E-43 272.0 17.5 169 27-201 2-207 (219)
2 COG1272 Predicted membrane pro 100.0 5.9E-38 1.3E-42 269.7 14.9 161 35-201 15-214 (226)
3 TIGR01065 hlyIII channel prote 100.0 4.6E-32 9.9E-37 229.3 16.0 156 40-201 1-195 (204)
4 KOG4243 Macrophage maturation- 100.0 4.8E-29 1E-33 213.9 8.0 165 29-201 74-279 (298)
5 PF03006 HlyIII: Haemolysin-II 99.9 3.8E-22 8.2E-27 167.3 12.7 159 37-201 2-220 (222)
6 KOG0748 Predicted membrane pro 98.7 1.2E-07 2.7E-12 84.6 11.3 121 79-200 98-260 (286)
7 PF05875 Ceramidase: Ceramidas 98.4 6.4E-06 1.4E-10 71.9 13.1 63 36-101 21-89 (262)
8 PF12036 DUF3522: Protein of u 95.3 0.11 2.4E-06 43.7 8.4 148 40-193 7-186 (186)
9 KOG2329 Alkaline ceramidase [L 94.1 0.085 1.9E-06 47.2 4.9 70 37-109 30-110 (276)
10 COG5500 Predicted integral mem 27.3 66 0.0014 26.1 2.9 20 162-181 82-101 (159)
11 PF06645 SPC12: Microsomal sig 21.0 2E+02 0.0044 20.6 4.2 43 36-78 6-51 (76)
No 1
>PRK15087 hemolysin; Provisional
Probab=100.00 E-value=1.6e-38 Score=271.96 Aligned_cols=169 Identities=21% Similarity=0.292 Sum_probs=146.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhc-------------c-CchhHHHHHHHHHHHHHHHHHHhhhhcCc-hhHHH
Q 028540 27 SHFPLLSGDLHLLERVANVLTSLPFIALGL-------------Q-TPRKNLNMTLYANSLVGVGVTSSLYHSSR-GKLRK 91 (207)
Q Consensus 27 ~~~p~~~~~~t~~Ee~aN~iTH~~~~~~~~-------------~-~~~~~~s~~vYg~sli~lf~~STlYH~~~-~~~k~ 91 (207)
-|+|..++.+++.||.+|++||++++.++. + +.++..+..+|+.|++++|++||+||..+ ++.|+
T Consensus 2 ~~~~~~~~~~~~~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~ 81 (219)
T PRK15087 2 VQKPLITQGYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKR 81 (219)
T ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 478877888899999999999986543221 1 23467889999999999999999999988 58899
Q ss_pred HHHHHhhhhh----h-h-HHHHHHHhcCCchHHHHHHH------HHH----hhc-ccchHHHH--HHHHHHHHHHHHHhh
Q 028540 92 YLRWADYAMI----A-T-ATVCLSRALRDENPKMLMAA------SAL----ALP-IQPLMVSA--VHTGMMEVAFAKRAL 152 (207)
Q Consensus 92 ~~rrlDH~aI----A-T-TP~~l~~~l~~~~g~~lla~------~Gi----~~~-~~~~l~~~--l~mGW~~v~~~~~l~ 152 (207)
++||+||++| | | ||+++. .+++++++.++++ +|+ ++. ++|++++. ++|||++++.++++.
T Consensus 82 ~~~rlDh~~I~llIaGsytP~~~~-~~~~~~~~~l~~~iW~~a~~Gi~~~~~~~~~~r~l~~~~Yl~mGw~~v~~~~~l~ 160 (219)
T PRK15087 82 WLKKFDHCAIYLLIAGTYTPFLLV-GLDSPLARGLMIVIWSLALLGILFKLAFAHRFKVLSLVTYLAMGWLSLIVIYQLA 160 (219)
T ss_pred HHHHccHHHHHHHHHHhhHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 7 8 999998 8888888876544 677 445 88999988 999999999999999
Q ss_pred cCcccccCcHHHHHHHHhhhcceeccccc---CCCCchhhHHHHHHHHHHHH
Q 028540 153 NDPNLRMAHTVHKVSSLLGGVFFIADDVF---PETPYLHAAWHLAAAVGVGT 201 (207)
Q Consensus 153 ~~~~~~~l~~~~~~lll~GGi~YtvG~if---~~~p~~H~IWHlfV~~ga~~ 201 (207)
+.+++.++.++++||++|++|++| ||.|+.|+|||+||++|+.+
T Consensus 161 -----~~~~~~~l~~l~~GG~~Y~~G~~fY~~~~~p~~H~IwH~fVl~ga~~ 207 (219)
T PRK15087 161 -----IKLAIGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVC 207 (219)
T ss_pred -----HhCCHHHHHHHHHHhHHHHhhHHHHccCCCCCchhHHHHHHHHHHHH
Confidence 888999999999999999999999 57899999999999999865
No 2
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=269.74 Aligned_cols=161 Identities=24% Similarity=0.304 Sum_probs=143.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhc-------------cCchhHHHHHHHHHHHHHHHHHHhhhhcCc--hhHHHHHHHHhhh
Q 028540 35 DLHLLERVANVLTSLPFIALGL-------------QTPRKNLNMTLYANSLVGVGVTSSLYHSSR--GKLRKYLRWADYA 99 (207)
Q Consensus 35 ~~t~~Ee~aN~iTH~~~~~~~~-------------~~~~~~~s~~vYg~sli~lf~~STlYH~~~--~~~k~~~rrlDH~ 99 (207)
.++..||.+|++||+++..++. .+.++.++..+|+.|++.||.+||+||..+ .|.|+++||+||+
T Consensus 15 ~~~~~~e~~n~~tHlvGail~i~~l~~l~~~a~~~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~ 94 (226)
T COG1272 15 SYSWHEEIANAITHLIGAILAIVGLVLLLVYALITGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHS 94 (226)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHH
Confidence 5688999999999987654321 245678999999999999999999999998 3999999999999
Q ss_pred hh----h-h-HHHHHHHhcCCchHHHHHHH------HHH----hhc-ccchHHHH--HHHHHHHHHHHHHhhcCcccccC
Q 028540 100 MI----A-T-ATVCLSRALRDENPKMLMAA------SAL----ALP-IQPLMVSA--VHTGMMEVAFAKRALNDPNLRMA 160 (207)
Q Consensus 100 aI----A-T-TP~~l~~~l~~~~g~~lla~------~Gi----~~~-~~~~l~~~--l~mGW~~v~~~~~l~~~~~~~~l 160 (207)
+| | | ||+++. .+++++++.++++ +|+ .++ ++|++++. ++|||+.++.++|+. +.+
T Consensus 95 ~I~vLIAgSyTP~~l~-~l~~~~~~~~~~iiW~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l~-----~~l 168 (226)
T COG1272 95 GIYVLIAGSYTPFLLV-GLYGPLGWILLGLIWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLI-----AKL 168 (226)
T ss_pred HHHHHHHHhhHHHhHH-HhccchHHHHHHHHHHHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHHH-----HhC
Confidence 99 7 9 999998 9999999988765 677 445 88999988 999999999999999 999
Q ss_pred cHHHHHHHHhhhcceeccccc---C--CCCchhhHHHHHHHHHHHH
Q 028540 161 HTVHKVSSLLGGVFFIADDVF---P--ETPYLHAAWHLAAAVGVGT 201 (207)
Q Consensus 161 ~~~~~~lll~GGi~YtvG~if---~--~~p~~H~IWHlfV~~ga~~ 201 (207)
++.++.++++||+.||+|++| | +.|+.|+|||+||++||++
T Consensus 169 ~~~~~~~l~~GGv~YsvG~ifY~~~~~~~~~~H~iwH~fVv~ga~~ 214 (226)
T COG1272 169 GLIGLVLLALGGVLYSVGAIFYVLRIDRIPYSHAIWHLFVVGGAAC 214 (226)
T ss_pred chHHHHHHHHHhHHheeeeEEEEEeeccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999 5 6899999999999999865
No 3
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=100.00 E-value=4.6e-32 Score=229.31 Aligned_cols=156 Identities=24% Similarity=0.274 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHhc-------------cCchhHHHHHHHHHHHHHHHHHHhhhhcCc--hhHHHHHHHHhhhhh---
Q 028540 40 ERVANVLTSLPFIALGL-------------QTPRKNLNMTLYANSLVGVGVTSSLYHSSR--GKLRKYLRWADYAMI--- 101 (207)
Q Consensus 40 Ee~aN~iTH~~~~~~~~-------------~~~~~~~s~~vYg~sli~lf~~STlYH~~~--~~~k~~~rrlDH~aI--- 101 (207)
||.+|++||++++.++. .+.+++.+..+|+++++.+|++||+||..+ ++.|+++||+||++|
T Consensus 1 ~e~~N~~tH~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~l 80 (204)
T TIGR01065 1 EEIANAITHGIGAVLSIIALALLVIYSWDHGGAVAVLGFSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVL 80 (204)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHH
Confidence 79999999986543221 123468999999999999999999999887 388999999999999
Q ss_pred -h-h-HHHHHHHhcCCchHHHHHHH------HHH----hhc-ccchHHHH--HHHHHHHHHHHHHhhcCcccccCcHHHH
Q 028540 102 -A-T-ATVCLSRALRDENPKMLMAA------SAL----ALP-IQPLMVSA--VHTGMMEVAFAKRALNDPNLRMAHTVHK 165 (207)
Q Consensus 102 -A-T-TP~~l~~~l~~~~g~~lla~------~Gi----~~~-~~~~l~~~--l~mGW~~v~~~~~l~~~~~~~~l~~~~~ 165 (207)
+ | ||+++. .+.+++++.++.+ .|+ +++ ++|++++. ++|||+++..+|++. +..+..++
T Consensus 81 IaGsytP~~~~-~~~~~~~~~~~~~iw~la~~gi~~~~~~~~~~r~~r~~~y~~~G~~~v~~~~~~~-----~~~~~~~~ 154 (204)
T TIGR01065 81 IAGTYTPFLLL-ALPGPLGWTVLWIIWGLAIGGIIYKLFFHKRPRWLSLFLYLIMGWLVVLVIKPLY-----HNLPGAGF 154 (204)
T ss_pred HHHhhHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHH-----HhCCHHHH
Confidence 6 8 999998 8888888776554 566 345 78888888 999999999999988 78899999
Q ss_pred HHHHhhhcceeccccc---C-CCCch-hhHHHHHHHHHHHH
Q 028540 166 VSSLLGGVFFIADDVF---P-ETPYL-HAAWHLAAAVGVGT 201 (207)
Q Consensus 166 ~lll~GGi~YtvG~if---~-~~p~~-H~IWHlfV~~ga~~ 201 (207)
.++++||++|++|++| | +.|++ |+|||+||++|+.+
T Consensus 155 ~~l~~gg~~Y~~G~~fY~~~~p~~~~~H~iwH~fV~~g~~~ 195 (204)
T TIGR01065 155 SLLAAGGLLYTVGAIFYALKWPIPFTYHAIWHLFVLGASAC 195 (204)
T ss_pred HHHHHHhHHHHcchHheeecCCCCCCcChHHHHHHHHHHHH
Confidence 9999999999999999 3 66788 99999999999864
No 4
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=99.95 E-value=4.8e-29 Score=213.93 Aligned_cols=165 Identities=24% Similarity=0.259 Sum_probs=138.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHh----------ccCchhHHHHHHHHHHHHHHHHHHhhhhcCc------h---hH
Q 028540 29 FPLLSGDLHLLERVANVLTSLPFIALG----------LQTPRKNLNMTLYANSLVGVGVTSSLYHSSR------G---KL 89 (207)
Q Consensus 29 ~p~~~~~~t~~Ee~aN~iTH~~~~~~~----------~~~~~~~~s~~vYg~sli~lf~~STlYH~~~------~---~~ 89 (207)
.|....++|..|++||++||++.+.-+ .++.|+.+.++|||.++++||++||.||... . +.
T Consensus 74 ~~g~aYqPT~~EhvAN~~tHai~I~PaIl~~~~l~~~s~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r~l 153 (298)
T KOG4243|consen 74 PAGGAYQPTEYEHVANCYTHAIWIVPAILGSALLHRLSDDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLRTL 153 (298)
T ss_pred CCCCCCCCchHHHHHhhHhhHhhhhHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566889999999999997655421 1467899999999999999999999999874 1 46
Q ss_pred HHHHHHHhhhhh----h-h-HHHHHHHhcCC-----chHHHHHHHHHH----hhc-ccchHHHH--HHHHHHHHHHHHHh
Q 028540 90 RKYLRWADYAMI----A-T-ATVCLSRALRD-----ENPKMLMAASAL----ALP-IQPLMVSA--VHTGMMEVAFAKRA 151 (207)
Q Consensus 90 k~~~rrlDH~aI----A-T-TP~~l~~~l~~-----~~g~~lla~~Gi----~~~-~~~~l~~~--l~mGW~~v~~~~~l 151 (207)
|..++++|.++| | | +|++-+|-++. .|-.|++|+.|+ .|. |+|.+.+. ++||..+.+++-
T Consensus 154 ~~~lH~cDRa~IY~FIAaSY~PWLtLr~~g~~~~~m~W~IWlmA~~Gi~Yq~~fHErYK~lEt~~Ylvmg~gPalvv~-- 231 (298)
T KOG4243|consen 154 EHCLHMCDRAVIYFFIAASYAPWLTLRELGPLASHMRWFIWLMAAGGIIYQFLFHERYKVLETFFYLVMGFGPALVVT-- 231 (298)
T ss_pred HHHHHHhhhhHhhhhhhhcccccccHHhhCcHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhcCceEEEE--
Confidence 789999999999 6 8 99998875554 477889999999 455 99999998 999998887664
Q ss_pred hcCcccccCcHHHHHHHHhhhcceeccccc----CCCCchhhHHHHHHHHHHHH
Q 028540 152 LNDPNLRMAHTVHKVSSLLGGVFFIADDVF----PETPYLHAAWHLAAAVGVGT 201 (207)
Q Consensus 152 ~~~~~~~~l~~~~~~lll~GGi~YtvG~if----~~~p~~H~IWHlfV~~ga~~ 201 (207)
.+-...++.++..||.+|.+|.+| ..+|+.|+|||+||+.|++|
T Consensus 232 ------sm~~~~Gl~~l~~GG~~Y~lGvvFFK~DG~ipfAHAIWHLFV~l~A~c 279 (298)
T KOG4243|consen 232 ------SMNNTDGLQELATGGLFYCLGVVFFKSDGIIPFAHAIWHLFVALAAGC 279 (298)
T ss_pred ------EeCCchhHHHHHhCCEEEEEEEEEEecCCceehHHHHHHHHHHHHcch
Confidence 455688999999999999999999 46799999999999999865
No 5
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=99.88 E-value=3.8e-22 Score=167.34 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=120.6
Q ss_pred ChHHHHHHHHHHHHHHHHhc------------c--CchhHHHHHHHHHHHHHHHHHHhhhhcCc---h-hHHHHHHHHhh
Q 028540 37 HLLERVANVLTSLPFIALGL------------Q--TPRKNLNMTLYANSLVGVGVTSSLYHSSR---G-KLRKYLRWADY 98 (207)
Q Consensus 37 t~~Ee~aN~iTH~~~~~~~~------------~--~~~~~~s~~vYg~sli~lf~~STlYH~~~---~-~~k~~~rrlDH 98 (207)
+.-||.+|++||++++.... . +........+|..+.+.++.+||+||... . +.+++++|+||
T Consensus 2 ~~hNEt~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~ 81 (222)
T PF03006_consen 2 QLHNETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDY 81 (222)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcch
Confidence 35689999999976543220 1 23468899999999999999999999954 3 78999999999
Q ss_pred hhh----h-h-HHHHHHHhc--CCchHHHHHHH------HHH---h--h---cccchHHHH--HHHHHHHHHHHHHhhcC
Q 028540 99 AMI----A-T-ATVCLSRAL--RDENPKMLMAA------SAL---A--L---PIQPLMVSA--VHTGMMEVAFAKRALND 154 (207)
Q Consensus 99 ~aI----A-T-TP~~l~~~l--~~~~g~~lla~------~Gi---~--~---~~~~~l~~~--l~mGW~~v~~~~~l~~~ 154 (207)
++| + | ||.+.. .+ ++++++..++. .|+ . . ++++.+++. +.|||..++.+....
T Consensus 82 ~gI~l~i~gs~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~-- 158 (222)
T PF03006_consen 82 AGIFLLIAGSYTPFIYY-GFYCHPWLGWFYLAFIWILALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRI-- 158 (222)
T ss_pred hhhhHhHhhhhhhHHHh-hccccchHHHHHHHHHHHHHHHhHHhhcchhhcCCccceeeehHhHHHHHHHHhhhHHHH--
Confidence 999 5 7 999998 77 35555554433 555 1 1 145566665 999999998887733
Q ss_pred cccccCcHHH----HHHHHhhhcceeccccc---C------CCCc-----hhhHHHHHHHHHHHH
Q 028540 155 PNLRMAHTVH----KVSSLLGGVFFIADDVF---P------ETPY-----LHAAWHLAAAVGVGT 201 (207)
Q Consensus 155 ~~~~~l~~~~----~~lll~GGi~YtvG~if---~------~~p~-----~H~IWHlfV~~ga~~ 201 (207)
..++..+ +.+++.||++|++|++| | +.|+ .|+|||++|++|+.+
T Consensus 159 ---~~~~~~~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 159 ---FFLGGWGSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWGHSHQIWHIFVVLAALC 220 (222)
T ss_pred ---HHhccccchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCCccHHHHHHHHHHHHHH
Confidence 3334333 89999999999999999 3 4456 899999999999754
No 6
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=98.72 E-value=1.2e-07 Score=84.58 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=72.0
Q ss_pred HhhhhcCch---hHHHHHHHHhhhhh----h-h-HHHHHHHhcCCc--hHHHHHHH---HHH------hhc-----ccch
Q 028540 79 SSLYHSSRG---KLRKYLRWADYAMI----A-T-ATVCLSRALRDE--NPKMLMAA---SAL------ALP-----IQPL 133 (207)
Q Consensus 79 STlYH~~~~---~~k~~~rrlDH~aI----A-T-TP~~l~~~l~~~--~g~~lla~---~Gi------~~~-----~~~~ 133 (207)
|.+||..+. +.++.+.++||++| . | .|.... .+... +....+.. .|+ ..+ ++|-
T Consensus 98 S~~~H~~~~~s~~~~~~~~~lDY~GIs~li~gS~~~~~yy-~f~c~~~~~~iy~~~~~~lgi~~~~~~l~~~~~~~~~r~ 176 (286)
T KOG0748|consen 98 SSLYHLFSCHSEKVSRFFLKLDYAGISLLIIGSFLPIIYY-AFYCHPFFRLIYLPIILVLGLLAIFVSLSDKFRTPKRRP 176 (286)
T ss_pred HHHHHHHhcccHHHHHHHHHccHHhhHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHheeechhhhCCccchh
Confidence 999998873 88999999999999 2 5 566554 55432 22221211 333 111 2222
Q ss_pred HHHH--HHHH-HHHHHHHHHhhcCcccccCcHHHHHHHHhhhcceeccccc--CCC-----C-------chhhHHHHHHH
Q 028540 134 MVSA--VHTG-MMEVAFAKRALNDPNLRMAHTVHKVSSLLGGVFFIADDVF--PET-----P-------YLHAAWHLAAA 196 (207)
Q Consensus 134 l~~~--l~mG-W~~v~~~~~l~~~~~~~~l~~~~~~lll~GGi~YtvG~if--~~~-----p-------~~H~IWHlfV~ 196 (207)
++.. +.|| +.++...-.+..+...+......+.+....++.|.+|++| .++ | ..|-|||++|+
T Consensus 177 ~R~~~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~SHQifHv~vv 256 (286)
T KOG0748|consen 177 LRAGVFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFDIWGHSHQIFHVLVV 256 (286)
T ss_pred hHHHHHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccceeCChhHHHHHHHH
Confidence 3333 7776 4444444444322211112355667777788888888888 222 3 25999999999
Q ss_pred HHHH
Q 028540 197 VGVG 200 (207)
Q Consensus 197 ~ga~ 200 (207)
+|+-
T Consensus 257 ~~a~ 260 (286)
T KOG0748|consen 257 LAAL 260 (286)
T ss_pred HHHH
Confidence 9874
No 7
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=98.40 E-value=6.4e-06 Score=71.90 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHHHHHHHHhccC------chhHHHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHhhhhh
Q 028540 36 LHLLERVANVLTSLPFIALGLQT------PRKNLNMTLYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMI 101 (207)
Q Consensus 36 ~t~~Ee~aN~iTH~~~~~~~~~~------~~~~~s~~vYg~sli~lf~~STlYH~~~~~~k~~~rrlDH~aI 101 (207)
.....|-.|.+|+++++++|... .+......+..++++.+..-|++||+.. +...|.+|=..|
T Consensus 21 s~yiAEf~NtlSNl~fi~~al~gl~~~~~~~~~~~~~l~~~~l~~VGiGS~~FHaTl---~~~~ql~DelPM 89 (262)
T PF05875_consen 21 SPYIAEFWNTLSNLAFIVAALYGLYLARRRGLERRFALLYLGLALVGIGSFLFHATL---SYWTQLLDELPM 89 (262)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhHHHHHhCh---hhhHHHhhhhhH
Confidence 34678999999999988766421 1112344566678889999999999944 466788998888
No 8
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=95.35 E-value=0.11 Score=43.72 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHHHHhhhhcCc-hh-----HHHHHHHHhhhhh-----h-h-H
Q 028540 40 ERVANVLTSLPFIALGLQT--PRKNLNMTLYANSLVGVGVTSSLYHSSR-GK-----LRKYLRWADYAMI-----A-T-A 104 (207)
Q Consensus 40 Ee~aN~iTH~~~~~~~~~~--~~~~~s~~vYg~sli~lf~~STlYH~~~-~~-----~k~~~rrlDH~aI-----A-T-T 104 (207)
+-+.-.+||+.++...... .+......+|..+|+. |+.||+.. .+ ..--+.++|.+.. + . |
T Consensus 7 ~~l~l~lSnl~~lP~i~~a~rr~~~~Ea~v~~~tm~~----S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~~~vt 82 (186)
T PF12036_consen 7 QFLLLTLSNLAFLPTIYVAVRRRYHFEAFVYTFTMFF----STFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLSIWVT 82 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHhcccccCCCCceEEeechHHHHHHHHHHHHHHHHHHH
Confidence 3344456665444322111 2234667788887754 99999986 21 1223344444433 3 3 5
Q ss_pred HHHHHHhcCCchHHH--HHHHHHH-hhc---ccchHHHH--HHHHHHHHHHHHHhhcCcccccCc-H---HHHHHHHhhh
Q 028540 105 TVCLSRALRDENPKM--LMAASAL-ALP---IQPLMVSA--VHTGMMEVAFAKRALNDPNLRMAH-T---VHKVSSLLGG 172 (207)
Q Consensus 105 P~~l~~~l~~~~g~~--lla~~Gi-~~~---~~~~l~~~--l~mGW~~v~~~~~l~~~~~~~~l~-~---~~~~lll~GG 172 (207)
..++- .+++..... +++++.+ +.. +++...+. ++.|-+....-. ..+..+.+... + .....++.|.
T Consensus 83 l~~~a-~~~~~~~~~l~~~~~~~~ai~~~~~~~~~~~~~~Pi~~~~~i~~~~w-~~r~~~~~~~~~~~~~~~~~~l~~g~ 160 (186)
T PF12036_consen 83 LCAMA-RLDEPLKSVLHYFGALVIAIFQQKDRWSLWNTIGPILIGLLILLVSW-LYRCRRRRRCYPPSWRRWLFYLLPGI 160 (186)
T ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHHHHhhCcccchhhHHHHHHHHHHHHHHH-heecccCCccCChHHHHHHHHHHHHH
Confidence 55553 445444222 2233333 222 33322232 555554444333 22211112222 2 2455667777
Q ss_pred cceeccccc---CCCC--chhhHHHH
Q 028540 173 VFFIADDVF---PETP--YLHAAWHL 193 (207)
Q Consensus 173 i~YtvG~if---~~~p--~~H~IWHl 193 (207)
++.++|... ++.+ +.|.+||+
T Consensus 161 ~~~~~Gl~~f~et~dnY~~~HSlWHi 186 (186)
T PF12036_consen 161 IFFILGLDLFLETNDNYRIVHSLWHI 186 (186)
T ss_pred HHHHHHHhHhhcCCCcEEEEeeeeeC
Confidence 788888763 3444 58999995
No 9
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=94.11 E-value=0.085 Score=47.16 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHHHHHHh---c-cCchhHHHHH--HHHHHHHHHHHHHhhhhcCchhHHHHHHHHhhhhh--h--h-HH
Q 028540 37 HLLERVANVLTSLPFIALG---L-QTPRKNLNMT--LYANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMI--A--T-AT 105 (207)
Q Consensus 37 t~~Ee~aN~iTH~~~~~~~---~-~~~~~~~s~~--vYg~sli~lf~~STlYH~~~~~~k~~~rrlDH~aI--A--T-TP 105 (207)
..+.|.+|..|..++++.+ + +..++.+.-. +=+.++..+...|..||.. .+..+|-+|-.++ + + .|
T Consensus 30 ~yIAEf~NT~sN~~fil~~~~~l~~~y~~~~e~~~~l~~v~~~ivgl~S~~fH~T---L~~~~QllDElamiw~i~~~~~ 106 (276)
T KOG2329|consen 30 PYIAEFANTESNSPFILLAFIGLHCAYRQKLEKRAYLICVLFTIVGLGSMYFHMT---LVYKGQLLDELAMIWEIPLVSL 106 (276)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhh---HHHhheehhhhhHHHHHHHHHH
Confidence 4678999999998877543 2 2333433333 3355667777899999984 4567788888887 3 3 55
Q ss_pred HHHH
Q 028540 106 VCLS 109 (207)
Q Consensus 106 ~~l~ 109 (207)
.|..
T Consensus 107 ~cy~ 110 (276)
T KOG2329|consen 107 LCYF 110 (276)
T ss_pred hhcc
Confidence 5554
No 10
>COG5500 Predicted integral membrane protein [Function unknown]
Probab=27.32 E-value=66 Score=26.14 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhcceeccccc
Q 028540 162 TVHKVSSLLGGVFFIADDVF 181 (207)
Q Consensus 162 ~~~~~lll~GGi~YtvG~if 181 (207)
..+-.++++|++.|-+|..-
T Consensus 82 ~pgsy~Llag~l~YlvGt~~ 101 (159)
T COG5500 82 QPGSYYLLAGSLLYLVGTFG 101 (159)
T ss_pred CCCchhhhhhhhhheecCce
Confidence 33557889999999999874
No 11
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.95 E-value=2e+02 Score=20.59 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHH---HHHHHhccCchhHHHHHHHHHHHHHHHHH
Q 028540 36 LHLLERVANVLTSL---PFIALGLQTPRKNLNMTLYANSLVGVGVT 78 (207)
Q Consensus 36 ~t~~Ee~aN~iTH~---~~~~~~~~~~~~~~s~~vYg~sli~lf~~ 78 (207)
+...|++.+.+--. ++++.|.....-.....+|+++.++..++
T Consensus 6 Q~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv 51 (76)
T PF06645_consen 6 QRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLV 51 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667776665442 33444543333345666777776665443
Done!