Query 028540
Match_columns 207
No_of_seqs 121 out of 1071
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 21:56:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028540.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028540hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w98b1 a.74.1.1 (B:228-357) G 9.3 79 0.0058 22.4 2.3 33 77-109 58-95 (130)
2 d1iloa_ c.47.1.1 (A:) MTH985, 7.0 55 0.004 21.0 0.4 12 10-21 7-18 (77)
3 d1dxxa1 a.40.1.1 (A:9-119) Dys 5.5 2.7E+02 0.02 17.7 3.6 37 9-47 35-71 (111)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 5.0 1.9E+02 0.014 14.6 1.8 10 139-148 3-12 (27)
5 d1wjoa_ a.40.1.1 (A:) Fimbrin 5.0 2.8E+02 0.02 18.2 3.4 37 10-46 37-75 (124)
6 d2hf5a1 a.39.1.5 (A:81-113) Tr 3.9 1.9E+02 0.014 15.3 1.3 11 88-98 4-14 (33)
7 d1x5wa2 g.37.1.1 (A:36-64) Zin 3.7 87 0.0063 16.5 -0.3 6 14-19 5-10 (29)
8 d2ieca1 d.316.1.1 (A:11-123) H 3.7 74 0.0054 22.1 -0.8 11 23-33 96-106 (113)
9 d2r7ca2 d.216.1.1 (A:2-143) Ro 3.6 3.4E+02 0.025 18.9 2.9 30 21-50 58-87 (142)
10 d1tiza_ a.39.1.5 (A:) Calmodul 3.6 1.7E+02 0.013 16.8 1.1 11 89-99 3-13 (67)
No 1
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.26 E-value=79 Score=22.43 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=22.8
Q ss_pred HHHhhhhcCchhHHHHHHHHhhhhh---h-h-HHHHHH
Q 028540 77 VTSSLYHSSRGKLRKYLRWADYAMI---A-T-ATVCLS 109 (207)
Q Consensus 77 ~~STlYH~~~~~~k~~~rrlDH~aI---A-T-TP~~l~ 109 (207)
++|++||..+.+.-..---+|...| + = +||+.+
T Consensus 58 AAaAl~h~~~~e~~~kvSGl~w~~l~~Cv~WM~PF~~v 95 (130)
T d1w98b1 58 AASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMV 95 (130)
T ss_dssp HHHHHHHTSCHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 6789999987544333445777777 3 2 898876
No 2
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.02 E-value=55 Score=21.00 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=9.2
Q ss_pred ccCcchhhhhhh
Q 028540 10 FSSECSLISYLR 21 (207)
Q Consensus 10 ~~~~~~~~~~~~ 21 (207)
+|.||+-|--+.
T Consensus 7 lg~gC~~C~~~~ 18 (77)
T d1iloa_ 7 YGTGCANCQMLE 18 (77)
T ss_dssp ECSSSSTTHHHH
T ss_pred eCCCCccHHHHH
Confidence 588999987554
No 3
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.49 E-value=2.7e+02 Score=17.75 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=26.5
Q ss_pred cccCcchhhhhhhhhhccCCCCCCCCCCChHHHHHHHHH
Q 028540 9 HFSSECSLISYLRIYTCVSHFPLLSGDLHLLERVANVLT 47 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~Ee~aN~iT 47 (207)
-++.|-.||-+++.-+|. .-| .....++.+.+-|+-.
T Consensus 35 Dl~DG~~L~~Lle~l~~~-~~~-~~~~~~r~~~l~N~~~ 71 (111)
T d1dxxa1 35 DLQDGRRLLDLLEGLTGQ-KLP-KEKGSTRVHALNNVNK 71 (111)
T ss_dssp TTTTSHHHHHHHHHHHSC-CCC-CCCCSSHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHcCC-cCC-CCCCCcHhhHHHHHHH
Confidence 367899999999999994 345 3344567777777543
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.01 E-value=1.9e+02 Score=14.55 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=5.7
Q ss_pred HHHHHHHHHH
Q 028540 139 HTGMMEVAFA 148 (207)
Q Consensus 139 ~mGW~~v~~~ 148 (207)
.+||+.++..
T Consensus 3 ~lgwv~llvv 12 (27)
T d2e74h1 3 VLGWVALLVV 12 (27)
T ss_dssp HHHHHHHHHH
T ss_pred chhHhHHHHH
Confidence 4566665544
No 5
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.98 E-value=2.8e+02 Score=18.22 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=23.4
Q ss_pred ccCcchhhhhhhhhhccC-CCC-CCCCCCChHHHHHHHH
Q 028540 10 FSSECSLISYLRIYTCVS-HFP-LLSGDLHLLERVANVL 46 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~p-~~~~~~t~~Ee~aN~i 46 (207)
+..|-.||.+++.+.|.. ++. ....+.+..|..-|+-
T Consensus 37 l~DG~~L~~Ll~~l~p~~i~~~~~~~~~~~~~~~~~N~~ 75 (124)
T d1wjoa_ 37 ISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAK 75 (124)
T ss_dssp GGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhccCCHHhcccCCccHhhHHHHHH
Confidence 778999999999999943 222 1122335555555543
No 6
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=3.89 E-value=1.9e+02 Score=15.29 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=8.0
Q ss_pred hHHHHHHHHhh
Q 028540 88 KLRKYLRWADY 98 (207)
Q Consensus 88 ~~k~~~rrlDH 98 (207)
..|+.||.+|.
T Consensus 4 el~eAF~~FDk 14 (33)
T d2hf5a1 4 EIREAFRVFDK 14 (33)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhCC
Confidence 46778888875
No 7
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.69 E-value=87 Score=16.47 Aligned_cols=6 Identities=33% Similarity=1.032 Sum_probs=3.3
Q ss_pred chhhhh
Q 028540 14 CSLISY 19 (207)
Q Consensus 14 ~~~~~~ 19 (207)
|+.||+
T Consensus 5 C~~CsF 10 (29)
T d1x5wa2 5 CNYCSF 10 (29)
T ss_dssp CSSSSC
T ss_pred cceecc
Confidence 556653
No 8
>d2ieca1 d.316.1.1 (A:11-123) Hypothetical protein MK0786 {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.68 E-value=74 Score=22.09 Aligned_cols=11 Identities=18% Similarity=0.452 Sum_probs=8.7
Q ss_pred hhccCCCCCCC
Q 028540 23 YTCVSHFPLLS 33 (207)
Q Consensus 23 ~~~~~~~p~~~ 33 (207)
|.|+.|||+|.
T Consensus 96 ~~~E~dYPLM~ 106 (113)
T d2ieca1 96 FIEELNYPLMW 106 (113)
T ss_dssp EEGGGTEEEEE
T ss_pred ecccCCCceEE
Confidence 67889999764
No 9
>d2r7ca2 d.216.1.1 (A:2-143) Rotavirus NSP2 fragment, N-terminal domain {Simian 11 rotavirus [TaxId: 10923]}
Probab=3.60 E-value=3.4e+02 Score=18.94 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=23.0
Q ss_pred hhhhccCCCCCCCCCCChHHHHHHHHHHHH
Q 028540 21 RIYTCVSHFPLLSGDLHLLERVANVLTSLP 50 (207)
Q Consensus 21 ~~~~~~~~~p~~~~~~t~~Ee~aN~iTH~~ 50 (207)
.-|++-.|.+.|+.+.....++||.+.-..
T Consensus 58 kR~nt~~nsrGmnyet~m~~kVA~Li~~~L 87 (142)
T d2r7ca2 58 KRYNTNDNSRGMNFETIMFTKVAMLICEAL 87 (142)
T ss_dssp GGBCBTTBSSSBCTTSHHHHHHHHHHHHHH
T ss_pred hhccCCCcccCccchHHHHHHHHHHHHHHh
Confidence 346777777778888888899999887653
No 10
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.60 E-value=1.7e+02 Score=16.79 Aligned_cols=11 Identities=9% Similarity=0.063 Sum_probs=7.0
Q ss_pred HHHHHHHHhhh
Q 028540 89 LRKYLRWADYA 99 (207)
Q Consensus 89 ~k~~~rrlDH~ 99 (207)
+|+.|+.+|.-
T Consensus 3 ~r~~F~~~D~d 13 (67)
T d1tiza_ 3 AKRVFEKFDKN 13 (67)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHCCC
Confidence 56677776653
Done!