BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028541
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
Nicotinate Phosphoribosyltransferase, New York
Structural Genomics Consortium
Length = 494
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 107/181 (59%), Gaps = 8/181 (4%)
Query: 28 LLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEE 87
L D+YQ M YW+ G+ D AVF+ YFR+ PF Y IFAGLE + ++ N TE
Sbjct: 12 LHTDMYQINMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTES 71
Query: 88 EITFVRDSLPGSCEDGFFDYLRG--INCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQL 145
+I ++R+ + ED F YL C+ V + EG +VF PL+++EGP+A QL
Sbjct: 72 DIAYLRE-VEEYPED-FLTYLANFEFKCT---VRSALEGDLVFNNEPLIQIEGPLAQCQL 126
Query: 146 LETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQGPDGGIGASKYCYIGGFDA 205
+ET +N++N+ +L+ T AAR + V G LLEFG RRAQ D I ++ YIGG DA
Sbjct: 127 VETALLNMVNFQTLIATKAARIKSVIGDDP-LLEFGTRRAQELDAAIWGTRAAYIGGADA 185
Query: 206 T 206
T
Sbjct: 186 T 186
>pdb|1YTD|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Native Structure
pdb|1YTE|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Phosphoribosylpyrophosphate Bound Structure
pdb|1YTK|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
With Nicotinate Mononucleotide
pdb|2I1O|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
Length = 398
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 103 GFFDYLRGINCSDVEVHAITEGSVVFPK------VPLLRVEGPVAVVQLLETPFVNLINY 156
G + L+ + DV+++AI EG+++FP+ VP +RVEG + ET + I
Sbjct: 62 GLDEVLKLLEGLDVDLYAIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQ 121
Query: 157 ASLVTTNAARHRFVAGKSKMLLEFGLRRAQGPDGGIGASKYCYIGGFD 204
AS ++T A++ R AG S FG+RR P + YIGG D
Sbjct: 122 ASGISTKASKVRLAAGDSP-FFSFGIRRMH-PAISPMIDRSAYIGGAD 167
>pdb|2I14|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|E Chain E, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|F Chain F, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
Length = 395
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 116 VEVHAITEGSVVFPKVPLLRVEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGKSK 175
V V+A+ EG++ P P+L++EG A + ET + +++ AS + T A R + +A K K
Sbjct: 77 VNVYAMPEGTIFHPYEPVLQIEGDYADFGIYETALLGMLSQASGIATAALRIK-IAAKFK 135
Query: 176 MLLEFGLRRAQGPDGGIGASKYCYIGGFD 204
+ FG+R P + +IGG D
Sbjct: 136 PVYSFGIRHMH-PAIAPMIDRAAFIGGCD 163
>pdb|2IM5|A Chain A, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
pdb|2IM5|B Chain B, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
pdb|2IM5|C Chain C, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
pdb|2IM5|D Chain D, Crystal Structure Of Nicotinate Phosphoribosyltransferase
From Porphyromonas Gingivalis
Length = 394
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 28 LLNDLYQFTMAYAYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEEC-IRFIANFKLTE 86
L DLY+FT YAY K RA + F G FA L IR +A LT
Sbjct: 8 LDTDLYKFTTGYAY---AKLFPRAYGEFRFIDRNRQGFTEEFAELVRGEIRAMAALSLTR 64
Query: 87 EEITFVRDSLPGSCEDGFFDYLRG--INCSDVEVHAITEGSVVFPKVPLLRVEGPVAVVQ 144
+E F++ LP + D+L G + +V V +G + +R +G + V
Sbjct: 65 DEKEFLQRELP-YLPPIYIDFLDGFRFDPEEVTVSIDAQGHLD------IRAQGLLYRVT 117
Query: 145 LLETPFVNLIN 155
L ETP + +I+
Sbjct: 118 LWETPILAVIS 128
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 66 YTIFAGLEECIRFIANFKLTEEEITFVRDSL--PGSCEDGFFDYLRGINCSDVEVHAITE 123
Y GL C F+ + ++ + D+L P + G +YL GI ++ + E
Sbjct: 485 YVTMEGLRICTMFLQ--PVMPQKAKEIMDALGVPEAARVGMENYLFGIVKPGTKIAGLAE 542
Query: 124 GSVVFPKVPLLRVEG 138
G VVF KV L EG
Sbjct: 543 GQVVFQKVTLPTEEG 557
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(239-1451)
Length = 1219
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 146 LETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRA 185
LET FV+++N S+ A + + A K + FG R+A
Sbjct: 688 LETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKA 727
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(236-1259)
Length = 1030
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 146 LETPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRA 185
LET FV+++N S+ A + + A K + FG R+A
Sbjct: 691 LETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKA 730
>pdb|2KZ5|A Chain A, Solution Nmr Structure Of Transcription Factor Nf-E2
Subunit's Dna Binding Domain From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4653b
Length = 91
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 40 AYWKAGKHDERAVFDLYFRKNPFGGEYTIFAGLEECIRFIANFKLTEEEITFVRD 94
A +AG DER + K PF + + +++ +A + LTE ++ VRD
Sbjct: 16 ARGEAGSRDERRALAM---KIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRD 67
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 9 SENQAGRSVSGPTNPMVTPLLNDLYQFTMAYAYWKAGKHDERAVFDLY 56
+E+ RS+ GP + T ++ A AYW A D+++ F +
Sbjct: 83 AESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFH 130
>pdb|1X3M|A Chain A, Crystal Structure Of Adp Bound Propionate Kinase (tdcd)
From Salmonella Typhimurium
pdb|1X3N|A Chain A, Crystal Structure Of Amppnp Bound Propionate Kinase (Tdcd)
From Salmonella Typhimurium
pdb|2E1Y|A Chain A, Crystal Structure Of Propionate Kinase (Tdcd) From
Salmonella Typhimurium
pdb|2E1Z|A Chain A, Crystal Structure Of Salmonella Typhimurium Propionate
Kinase (Tdcd) In Complex With Diadenosine Tetraphosphate
(Ap4a) Obtained After Co-Crystallization With Atp
pdb|2E20|A Chain A, Crystal Structure Of Salmonella Typhimurium Propionate
Kinase (Tdcd) In Complex With Diadenosine Tetraphosphate
(Ap4a)
Length = 415
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 148 TPFVNLINYASLVTTNAARHRFVAGKSKMLLEFGLRRAQGPD 189
+P L NYA+L +AARH F A + + + + P+
Sbjct: 125 SPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPE 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,472,589
Number of Sequences: 62578
Number of extensions: 259272
Number of successful extensions: 402
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 11
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)