Query 028542
Match_columns 207
No_of_seqs 241 out of 1743
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 21:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eld_A MJ16.5-P1, small heat s 99.9 2.4E-25 8.1E-30 178.1 13.2 95 108-204 57-160 (161)
2 1gme_A Heat shock protein 16.9 99.9 1.1E-24 3.8E-29 172.8 14.1 100 106-207 42-150 (151)
3 3gla_A Low molecular weight he 99.9 5.2E-24 1.8E-28 157.2 13.8 90 105-195 2-99 (100)
4 4fei_A Heat shock protein-rela 99.9 8.8E-24 3E-28 157.0 13.8 91 105-196 4-97 (102)
5 3aab_A Putative uncharacterize 99.9 1.1E-24 3.8E-29 166.9 8.9 88 106-195 23-117 (123)
6 3l1e_A Alpha-crystallin A chai 99.9 3.7E-23 1.3E-27 154.9 13.1 95 109-204 4-104 (106)
7 2wj5_A Heat shock protein beta 99.9 8.2E-23 2.8E-27 151.7 11.2 96 109-206 3-100 (101)
8 2klr_A Alpha-crystallin B chai 99.9 8.9E-23 3E-27 165.6 10.1 97 109-206 65-163 (175)
9 3q9p_A Heat shock protein beta 99.9 3.2E-22 1.1E-26 144.1 11.3 82 112-194 2-85 (85)
10 2bol_A TSP36, small heat shock 99.9 5.2E-21 1.8E-25 167.9 15.3 97 105-204 96-197 (314)
11 2y1y_A Alpha-crystallin B chai 99.8 6.3E-21 2.1E-25 138.6 11.0 83 113-196 2-86 (90)
12 2bol_A TSP36, small heat shock 99.8 1.8E-18 6.2E-23 151.7 9.2 86 108-194 221-314 (314)
13 2xcm_C SGT1-like protein, cyto 99.0 1.5E-09 5E-14 77.8 8.8 81 107-195 2-82 (92)
14 1rl1_A Suppressor of G2 allele 99.0 1.8E-09 6.2E-14 80.6 9.2 82 106-195 8-89 (114)
15 3eud_A Protein SHQ1; CS domain 98.4 4.3E-06 1.5E-10 62.7 10.7 79 106-196 16-98 (115)
16 2k8q_A Protein SHQ1; beta-sand 98.3 1.1E-06 3.7E-11 67.8 5.6 78 106-195 2-83 (134)
17 3igf_A ALL4481 protein; two-do 98.2 4.4E-06 1.5E-10 74.6 9.4 72 108-193 298-369 (374)
18 1x5m_A Calcyclin-binding prote 97.9 0.0002 7E-09 54.2 11.6 80 108-195 21-104 (127)
19 1wgv_A KIAA1068 protein; CS do 97.8 0.00041 1.4E-08 52.3 12.3 83 105-195 17-102 (124)
20 3qor_A Nuclear migration prote 97.8 0.00028 9.7E-09 53.1 10.8 81 104-195 13-97 (121)
21 1wfi_A Nuclear distribution ge 97.8 0.00011 3.8E-09 55.9 8.4 81 104-195 4-88 (131)
22 1wh0_A Ubiquitin carboxyl-term 97.8 0.00017 5.8E-09 55.5 9.3 88 107-195 19-112 (134)
23 1ejf_A Progesterone receptor P 97.7 0.00029 9.8E-09 53.3 9.5 78 109-195 5-82 (125)
24 2o30_A Nuclear movement protei 97.6 0.00056 1.9E-08 52.0 9.9 76 107-194 4-80 (131)
25 2rh0_A NUDC domain-containing 97.5 0.0012 4E-08 51.9 10.8 78 106-195 12-91 (157)
26 2kmw_A Uncharacterized protein 97.2 0.00092 3.1E-08 52.3 7.3 78 107-195 4-82 (150)
27 2cg9_X CO-chaperone protein SB 97.1 0.00023 7.7E-09 54.6 3.0 84 107-194 6-97 (134)
28 4fei_A Heat shock protein-rela 77.0 9.4 0.00032 26.8 6.9 33 119-151 63-96 (102)
29 4eld_A MJ16.5-P1, small heat s 74.5 22 0.00074 27.0 8.9 31 162-194 69-99 (161)
30 3q9p_A Heat shock protein beta 66.2 14 0.00048 25.0 5.6 34 159-194 7-40 (85)
31 3gla_A Low molecular weight he 63.2 22 0.00075 24.5 6.3 34 160-195 15-48 (100)
32 2cql_A OK/SW-CL.103, 60S ribos 61.0 23 0.00078 25.2 6.0 45 130-192 20-68 (100)
33 2nwt_A UPF0165 protein AF_2212 59.8 9.9 0.00034 25.5 3.6 17 175-191 3-19 (69)
34 2wj5_A Heat shock protein beta 58.6 15 0.0005 25.8 4.6 32 119-150 56-89 (101)
35 3l1e_A Alpha-crystallin A chai 56.1 18 0.00061 25.6 4.8 33 119-151 57-91 (106)
36 3aab_A Putative uncharacterize 55.2 54 0.0018 23.5 7.4 30 164-195 39-69 (123)
37 2y1y_A Alpha-crystallin B chai 54.9 28 0.00095 23.7 5.5 33 160-194 7-39 (90)
38 1gme_A Heat shock protein 16.9 54.8 25 0.00084 26.5 5.7 33 118-150 105-138 (151)
39 1rl6_A Protein (ribosomal prot 52.1 43 0.0015 26.3 6.8 46 130-193 11-56 (177)
40 3jx8_A Putative lipoprotein; s 49.5 84 0.0029 25.3 8.5 31 117-147 41-71 (250)
41 1nkw_E 50S ribosomal protein L 47.4 49 0.0017 26.8 6.5 46 130-193 39-84 (212)
42 1rl1_A Suppressor of G2 allele 46.9 25 0.00085 24.8 4.3 34 116-149 53-87 (114)
43 1vq8_E 50S ribosomal protein L 46.8 19 0.00066 28.4 4.0 47 130-193 9-55 (178)
44 3v2d_H 50S ribosomal protein L 45.6 33 0.0011 27.0 5.2 44 130-191 12-55 (180)
45 3pet_A Putative adhesin; right 43.3 43 0.0015 26.6 5.7 30 118-147 41-70 (221)
46 2xcm_C SGT1-like protein, cyto 41.7 20 0.00069 24.0 3.0 34 116-149 46-80 (92)
47 3iz5_F 60S ribosomal protein L 40.0 86 0.0029 24.8 6.9 46 130-192 13-60 (190)
48 2klr_A Alpha-crystallin B chai 37.8 49 0.0017 25.7 5.0 33 160-194 74-106 (175)
49 3j21_F 50S ribosomal protein L 35.8 32 0.0011 27.2 3.7 45 130-191 14-58 (184)
50 3ljy_A Putative adhesin; struc 35.7 1.5E+02 0.0051 23.6 7.9 58 112-192 6-71 (243)
51 1ew4_A CYAY protein; friedreic 32.3 25 0.00085 25.3 2.3 17 176-192 29-45 (106)
52 3u5e_H L8, RP24, YL11, 60S rib 31.7 1.7E+02 0.0058 23.0 7.4 46 130-192 13-59 (191)
53 2ks0_A Uncharacterized protein 30.8 25 0.00085 23.6 1.9 21 128-148 18-38 (71)
54 3bbo_I Ribosomal protein L6; l 30.3 26 0.0009 28.6 2.3 45 130-192 54-99 (223)
55 2gjh_A Designed protein; oblig 30.0 39 0.0013 21.2 2.6 23 128-150 30-52 (62)
56 1n91_A ORF, hypothetical prote 28.7 83 0.0028 22.6 4.6 39 112-151 8-47 (108)
57 3ug3_A Alpha-L-arabinofuranosi 27.3 56 0.0019 29.8 4.2 34 168-207 471-504 (504)
58 2zkr_e 60S ribosomal protein L 26.4 1.3E+02 0.0045 23.7 5.8 48 129-193 12-62 (192)
59 2o30_A Nuclear movement protei 24.5 97 0.0033 22.5 4.5 29 162-191 17-45 (131)
60 3oeq_A Frataxin homolog, mitoc 24.3 53 0.0018 24.3 2.9 16 177-192 49-64 (123)
61 1qys_A TOP7; alpha-beta, novel 23.5 85 0.0029 21.6 3.6 23 127-149 73-95 (106)
62 3qqz_A Putative uncharacterize 23.3 2.2E+02 0.0075 23.0 6.9 68 119-189 13-86 (255)
63 2kgs_A Uncharacterized protein 22.7 64 0.0022 23.7 3.1 66 125-190 2-92 (132)
64 3t3l_A Frataxin, mitochondrial 21.9 63 0.0022 24.0 2.9 17 175-191 40-56 (129)
65 3jx8_A Putative lipoprotein; s 21.6 1.1E+02 0.0038 24.5 4.7 41 107-147 54-106 (250)
No 1
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=99.93 E-value=2.4e-25 Score=178.09 Aligned_cols=95 Identities=24% Similarity=0.336 Sum_probs=82.0
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeecccccc--------Cc-eeeEEEEEEECCCCCCCCcceE
Q 028542 108 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED--------EE-SVRRYTSRIDLPEKLYRTDQIK 178 (207)
Q Consensus 108 p~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~--------e~-~~~~f~r~i~LP~~v~d~~~Ik 178 (207)
+++||+|++++|+|+++|||+++|||+|+++++.|+|+|+++...+. ++ .++.|.|+|.||.+| |.++|+
T Consensus 57 ~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~v-d~~~i~ 135 (161)
T 4eld_A 57 MPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV-KEENAS 135 (161)
T ss_dssp CCEEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCB-CGGGCE
T ss_pred cceeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCc-ccccEE
Confidence 34999999999999999999999999999999999999998764321 34 567999999999999 999999
Q ss_pred EEEeCCEEEEEEeCcCcccCCceeEe
Q 028542 179 AEMKNGVLKVTVPKVKEEERADVFQV 204 (207)
Q Consensus 179 A~~~nGvL~I~lPK~~~~~~~~~i~I 204 (207)
|.|+||||+|++||.+.. +++.|+|
T Consensus 136 A~~~nGvL~I~lpK~~~~-~~r~I~I 160 (161)
T 4eld_A 136 AKFENGVLSVILPKAESS-IKKGINI 160 (161)
T ss_dssp EEEETTEEEEEEEBCGGG-SCCCCCC
T ss_pred EEEECCEEEEEEEcCCCC-CCcEeec
Confidence 999999999999997544 3455544
No 2
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=99.92 E-value=1.1e-24 Score=172.76 Aligned_cols=100 Identities=39% Similarity=0.614 Sum_probs=86.0
Q ss_pred CcceeeEEEcCCeEEEEEEcCCCCcCceEEEEE-CCEEEEEEeecccccc--------CceeeEEEEEEECCCCCCCCcc
Q 028542 106 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLE-QNTLVIRGEGGKEGED--------EESVRRYTSRIDLPEKLYRTDQ 176 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~~dLPG~~~edV~V~v~-~~~L~I~g~~~~~~~~--------e~~~~~f~r~i~LP~~v~d~~~ 176 (207)
+.|++||+|++++|+|.++|||+++++|+|+++ ++.|+|+|+++.+.+. |+.++.|.|+|.||.+| +.+.
T Consensus 42 ~~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~v-d~~~ 120 (151)
T 1gme_A 42 ANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDA-KVEE 120 (151)
T ss_dssp GGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCC-CGGG
T ss_pred cCCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCc-cccc
Confidence 679999999999999999999999999999995 6899999998765432 33467899999999999 9999
Q ss_pred eEEEEeCCEEEEEEeCcCcccCCceeEeecC
Q 028542 177 IKAEMKNGVLKVTVPKVKEEERADVFQVKVD 207 (207)
Q Consensus 177 IkA~~~nGvL~I~lPK~~~~~~~~~i~I~Ie 207 (207)
|+|.|+||+|+|++||..++ +++.+.|+|+
T Consensus 121 i~A~~~nGvL~I~lPK~~~~-~~~~~~I~I~ 150 (151)
T 1gme_A 121 VKAGLENGVLTVTVPKAEVK-KPEVKAIQIS 150 (151)
T ss_dssp CEEEEETTEEEEEEECCCCC-TTCCCCCCCC
T ss_pred eEEEEECCEEEEEEEccCcC-CCCCeEeeeC
Confidence 99999999999999998654 3445666653
No 3
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=99.91 E-value=5.2e-24 Score=157.23 Aligned_cols=90 Identities=30% Similarity=0.492 Sum_probs=80.7
Q ss_pred CCcceeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeecccccc--------CceeeEEEEEEECCCCCCCCcc
Q 028542 105 GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED--------EESVRRYTSRIDLPEKLYRTDQ 176 (207)
Q Consensus 105 ~~~p~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~--------e~~~~~f~r~i~LP~~v~d~~~ 176 (207)
.+.|++||+|++++|+|.++|||+++++|+|+++++.|+|+|+++.+.+. ++..+.|.|+|.||.++ |.+.
T Consensus 2 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v-d~~~ 80 (100)
T 3gla_A 2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSA-DADG 80 (100)
T ss_dssp CSCCCEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTB-CTTS
T ss_pred CccCcEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCc-ChHH
Confidence 47899999999999999999999999999999999999999998765432 34467999999999999 9999
Q ss_pred eEEEEeCCEEEEEEeCcCc
Q 028542 177 IKAEMKNGVLKVTVPKVKE 195 (207)
Q Consensus 177 IkA~~~nGvL~I~lPK~~~ 195 (207)
|+|.|+||+|+|++||.++
T Consensus 81 i~A~~~~GvL~I~~pK~~~ 99 (100)
T 3gla_A 81 ITAAGRNGVLEIRIPKRPA 99 (100)
T ss_dssp CEEEEETTEEEEEEEBC--
T ss_pred eEEEEeCCEEEEEEecCCC
Confidence 9999999999999999754
No 4
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=99.91 E-value=8.8e-24 Score=157.02 Aligned_cols=91 Identities=22% Similarity=0.373 Sum_probs=82.4
Q ss_pred CCcceeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeecccccc---CceeeEEEEEEECCCCCCCCcceEEEE
Q 028542 105 GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED---EESVRRYTSRIDLPEKLYRTDQIKAEM 181 (207)
Q Consensus 105 ~~~p~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~---e~~~~~f~r~i~LP~~v~d~~~IkA~~ 181 (207)
.+.|++||+|++++|+|.++|||+++++|+|+++++.|+|+|+++.+..- ++..+.|.|+|.||.++ |.+.|+|.|
T Consensus 4 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~v-d~~~i~A~~ 82 (102)
T 4fei_A 4 PWTPAADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPV-RPASGVASL 82 (102)
T ss_dssp ECCCCEEEEEETTEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCB-CTTCCEEEE
T ss_pred cccCcEEEEEcCCEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCc-chhHcEEEE
Confidence 47899999999999999999999999999999999999999998653221 45678999999999999 999999999
Q ss_pred eCCEEEEEEeCcCcc
Q 028542 182 KNGVLKVTVPKVKEE 196 (207)
Q Consensus 182 ~nGvL~I~lPK~~~~ 196 (207)
+||+|+|++||.++.
T Consensus 83 ~~GvL~I~lpK~~~~ 97 (102)
T 4fei_A 83 AGGVLTVRFEKLRPT 97 (102)
T ss_dssp ETTEEEEEEEBSSCC
T ss_pred ECCEEEEEEEccCcc
Confidence 999999999998654
No 5
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=99.91 E-value=1.1e-24 Score=166.92 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=79.0
Q ss_pred CcceeeEEEcCCeEEEEEEcCCCCcCceEEEEEC-CEEEEEEeecccccc-----CceeeEEEEEEECCCCCCCCcce-E
Q 028542 106 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGED-----EESVRRYTSRIDLPEKLYRTDQI-K 178 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~~dLPG~~~edV~V~v~~-~~L~I~g~~~~~~~~-----e~~~~~f~r~i~LP~~v~d~~~I-k 178 (207)
+.|++||+|++++|+|.++|||++++||+|++++ +.|+|+|+++.+.+. ++.+ .|.|+|.||.++ +.++| +
T Consensus 23 ~~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~-~f~R~~~LP~~v-d~~~i~~ 100 (123)
T 3aab_A 23 VYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPK-YVRKVIRLPYNV-AKDAEIS 100 (123)
T ss_dssp HCSCEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCS-EEEEEEECSSEE-CTTCCCE
T ss_pred CCCcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeE-EEEEEEECCCCc-CcchhCe
Confidence 4688999999999999999999999999999999 999999998765421 2334 899999999999 99999 9
Q ss_pred EEEeCCEEEEEEeCcCc
Q 028542 179 AEMKNGVLKVTVPKVKE 195 (207)
Q Consensus 179 A~~~nGvL~I~lPK~~~ 195 (207)
|.|+||+|+|++||..+
T Consensus 101 A~~~~GvL~I~lPK~~~ 117 (123)
T 3aab_A 101 GKYENGVLTIRIPIAGT 117 (123)
T ss_dssp EEEETTEEEEEEEGGGE
T ss_pred eEEcCCEEEEEEEcCCC
Confidence 99999999999999754
No 6
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=99.90 E-value=3.7e-23 Score=154.93 Aligned_cols=95 Identities=18% Similarity=0.368 Sum_probs=81.4
Q ss_pred eeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccC-ceeeEEEEEEECCCCCCCCcceEEEE-eCCEE
Q 028542 109 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDE-ESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVL 186 (207)
Q Consensus 109 ~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e-~~~~~f~r~i~LP~~v~d~~~IkA~~-~nGvL 186 (207)
..+|+|++++|.|.++|||++++||+|+++++.|+|+|+++...++. ...+.|.|+|.||.++ |.+.|+|.| +||+|
T Consensus 4 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~i~A~~s~~GvL 82 (106)
T 3l1e_A 4 ISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNV-DQSALSCSLSADGML 82 (106)
T ss_dssp SEEEEECSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTB-CTTSCEEEECTTSEE
T ss_pred ceEEEEcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCc-ChhHcEEEECCCCEE
Confidence 47899999999999999999999999999999999999976543332 2356799999999999 999999999 89999
Q ss_pred EEEEeCcCccc----CCceeEe
Q 028542 187 KVTVPKVKEEE----RADVFQV 204 (207)
Q Consensus 187 ~I~lPK~~~~~----~~~~i~I 204 (207)
+|++||..++. +++.|+|
T Consensus 83 ~I~~PK~~~~~~~~~~~r~I~I 104 (106)
T 3l1e_A 83 TFSGPKIPSGVDAGHSERAIPV 104 (106)
T ss_dssp EEEEEBCCCCTTTTSSSCCCCC
T ss_pred EEEEEccCcccccCCCCeEeee
Confidence 99999987652 3445544
No 7
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=99.89 E-value=8.2e-23 Score=151.74 Aligned_cols=96 Identities=10% Similarity=0.204 Sum_probs=80.5
Q ss_pred eeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccC-ceeeEEEEEEECCCCCCCCcceEEEE-eCCEE
Q 028542 109 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDE-ESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVL 186 (207)
Q Consensus 109 ~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e-~~~~~f~r~i~LP~~v~d~~~IkA~~-~nGvL 186 (207)
.+||+|++++|.|.++|||++++||+|+++++.|+|+|+++...++. ...+.|+|+|.||.++ |.+.|+|.| +||+|
T Consensus 3 ~vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~i~A~~s~nGvL 81 (101)
T 2wj5_A 3 MAQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGV-DPAAVTSALSPEGVL 81 (101)
T ss_dssp CCCCCCCSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTB-CTTCCEEEECTTSEE
T ss_pred cEEEEEeCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCc-ChhHCEEEECCCCEE
Confidence 47899999999999999999999999999999999999987654332 3356799999999999 999999999 89999
Q ss_pred EEEEeCcCcccCCceeEeec
Q 028542 187 KVTVPKVKEEERADVFQVKV 206 (207)
Q Consensus 187 ~I~lPK~~~~~~~~~i~I~I 206 (207)
+|++||..++ +++.+.|..
T Consensus 82 ~I~lPK~~~~-~~~~~~i~~ 100 (101)
T 2wj5_A 82 SIQATPASAQ-ASLPSPPAA 100 (101)
T ss_dssp EEEECBCCCC-CSSCC----
T ss_pred EEEEECCCcC-CCCCCcccc
Confidence 9999998544 456776653
No 8
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=99.88 E-value=8.9e-23 Score=165.63 Aligned_cols=97 Identities=13% Similarity=0.325 Sum_probs=72.7
Q ss_pred eeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccCc-eeeEEEEEEECCCCCCCCcceEEEE-eCCEE
Q 028542 109 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEE-SVRRYTSRIDLPEKLYRTDQIKAEM-KNGVL 186 (207)
Q Consensus 109 ~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e~-~~~~f~r~i~LP~~v~d~~~IkA~~-~nGvL 186 (207)
.+||+|++++|+|.++|||+++|||+|+++++.|+|+|+++...++.+ ..+.|+|+|.||.+| |.++|+|+| +||||
T Consensus 65 ~~dv~e~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~V-d~~~i~A~~s~dGvL 143 (175)
T 2klr_A 65 LSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADV-DPLTITSSLSSDGVL 143 (175)
T ss_dssp ----CCCCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTC-CTTTCEEEECTTSCE
T ss_pred ceEEEEcCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCc-ChhHeEEEEcCCCEE
Confidence 369999999999999999999999999999999999999876543322 356799999999999 999999999 79999
Q ss_pred EEEEeCcCcccCCceeEeec
Q 028542 187 KVTVPKVKEEERADVFQVKV 206 (207)
Q Consensus 187 ~I~lPK~~~~~~~~~i~I~I 206 (207)
+|++||.++....+.|+|+.
T Consensus 144 ~I~lPK~~~~~~~r~I~I~~ 163 (175)
T 2klr_A 144 TVNGPRKQVSGPERTIPITR 163 (175)
T ss_dssp EEEEECC-------------
T ss_pred EEEEECCCCCCCCeEEEEec
Confidence 99999986544346666653
No 9
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=99.88 E-value=3.2e-22 Score=144.12 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=70.5
Q ss_pred EEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeecccccc-CceeeEEEEEEECCCCCCCCcceEEEEe-CCEEEEE
Q 028542 112 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVT 189 (207)
Q Consensus 112 i~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~IkA~~~-nGvL~I~ 189 (207)
+.|++++|.|.++|||++++||+|+++++.|+|+|+++...++ +...+.|.|+|.||.+| |.++|+|.|+ ||+|+|+
T Consensus 2 ~~E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~v-d~~~i~A~~~~~GvL~I~ 80 (85)
T 3q9p_A 2 GSHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGV-DPTQVSSSLSPEGTLTVE 80 (85)
T ss_dssp -CCCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTC-CGGGCEEEECTTSEEEEE
T ss_pred ccCcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCc-ChHHcEEEECCCCEEEEE
Confidence 4689999999999999999999999999999999998765432 23468999999999999 9999999998 9999999
Q ss_pred EeCcC
Q 028542 190 VPKVK 194 (207)
Q Consensus 190 lPK~~ 194 (207)
+||.+
T Consensus 81 lPK~k 85 (85)
T 3q9p_A 81 APMPK 85 (85)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99963
No 10
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.86 E-value=5.2e-21 Score=167.88 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=87.2
Q ss_pred CCcceeeEEEcCC----eEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEE
Q 028542 105 GLRRGWDAKETDD----ALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAE 180 (207)
Q Consensus 105 ~~~p~~di~e~~d----~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~ 180 (207)
.+.|++||+|+++ +|+|.++|||+++|+|+|+++++.|+|+|+++.+.+++..++.|.|+|.||.+| |.++|+|+
T Consensus 96 ~~~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~V-d~e~i~A~ 174 (314)
T 2bol_A 96 ELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSV-DRNHIQAT 174 (314)
T ss_dssp TTGGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTB-CGGGCEEE
T ss_pred cCCCccceEEcCCCCceEEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCc-cccccEEE
Confidence 4678999999999 999999999999999999999999999999987666667789999999999999 99999999
Q ss_pred Ee-CCEEEEEEeCcCcccCCceeEe
Q 028542 181 MK-NGVLKVTVPKVKEEERADVFQV 204 (207)
Q Consensus 181 ~~-nGvL~I~lPK~~~~~~~~~i~I 204 (207)
|+ ||||+|++||.+++. +.|.|
T Consensus 175 ~~~nGVL~I~lPK~~~~~--~~I~i 197 (314)
T 2bol_A 175 ITTDDVLVIEAPVNEPNY--KAIKL 197 (314)
T ss_dssp ECSSSEEEEEEEBSSCCT--TTEEE
T ss_pred EeCCCEEEEEEeccCccc--ceeec
Confidence 99 999999999986553 34544
No 11
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=99.85 E-value=6.3e-21 Score=138.61 Aligned_cols=83 Identities=17% Similarity=0.387 Sum_probs=68.6
Q ss_pred EEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccC-ceeeEEEEEEECCCCCCCCcceEEEE-eCCEEEEEE
Q 028542 113 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDE-ESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVTV 190 (207)
Q Consensus 113 ~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e-~~~~~f~r~i~LP~~v~d~~~IkA~~-~nGvL~I~l 190 (207)
.+++++|+|.++|||++++||+|+++++.|+|+|+++...++. ...+.|.|+|.||.+| |.+.|+|.| +||+|+|++
T Consensus 2 k~~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~v-d~~~i~A~~~~~GvL~I~~ 80 (90)
T 2y1y_A 2 AMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADV-DPLTITSSMSSDGVLTVNG 80 (90)
T ss_dssp ----CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTB-CGGGCEEEECTTSEEEEEE
T ss_pred CcCCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCc-ChhHcEEEECCCCEEEEEE
Confidence 4678999999999999999999999999999999987643332 2356799999999999 999999999 899999999
Q ss_pred eCcCcc
Q 028542 191 PKVKEE 196 (207)
Q Consensus 191 PK~~~~ 196 (207)
||..++
T Consensus 81 pK~~~~ 86 (90)
T 2y1y_A 81 PRKQVS 86 (90)
T ss_dssp CBC---
T ss_pred EcCCCC
Confidence 997554
No 12
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.75 E-value=1.8e-18 Score=151.74 Aligned_cols=86 Identities=23% Similarity=0.452 Sum_probs=71.7
Q ss_pred ceeeEEEcC---CeEEEEEEc-CCCCcCceEEEEECCEEEEEEeecccccc----CceeeEEEEEEECCCCCCCCcceEE
Q 028542 108 RGWDAKETD---DALNLSIDM-PGLGKEDVRVSLEQNTLVIRGEGGKEGED----EESVRRYTSRIDLPEKLYRTDQIKA 179 (207)
Q Consensus 108 p~~di~e~~---d~y~l~~dL-PG~~~edV~V~v~~~~L~I~g~~~~~~~~----e~~~~~f~r~i~LP~~v~d~~~IkA 179 (207)
...+|.+++ ++|.|+++| ||++||||+|++++|.|+|+|+++.+.+. ++.++.|+|+|.||++| |.++|+|
T Consensus 221 ~~~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~v-d~~~i~A 299 (314)
T 2bol_A 221 EGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVV-DASKTQA 299 (314)
T ss_dssp CEEEEEECTTSCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEE-CGGGCEE
T ss_pred CCCcEEEecCCCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCc-ChHHeEE
Confidence 346777765 489999999 99999999999999999999999876544 67789999999999999 9999999
Q ss_pred EEeCCEEEEEEeCcC
Q 028542 180 EMKNGVLKVTVPKVK 194 (207)
Q Consensus 180 ~~~nGvL~I~lPK~~ 194 (207)
+|+||||+|++||.+
T Consensus 300 ~~~dGvL~i~~Pk~~ 314 (314)
T 2bol_A 300 EIVDGLMVVEAPLFK 314 (314)
T ss_dssp EEETTEEEEEEEEEC
T ss_pred EEeCCEEEEEEecCC
Confidence 999999999999963
No 13
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=99.01 E-value=1.5e-09 Score=77.84 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=72.6
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCEE
Q 028542 107 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVL 186 (207)
Q Consensus 107 ~p~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL 186 (207)
.+.+++.++.+.+.|.+.+||+.+++++|.++++.|.|++.... ...|...+.|+..| +++..++.+.+|.|
T Consensus 2 ~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~-------~~~y~~~~~L~~~I-~~~~s~~~~~~~~l 73 (92)
T 2xcm_C 2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPG-------EDAYYLQPRLFGKI-IPDKCKYEVLSTKI 73 (92)
T ss_dssp CSEEEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTT-------SCCEEECCBBSSCB-CGGGCEEEECSSCE
T ss_pred CccccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCC-------CcEEEEeeEcCCcc-CchhEEEEEECCEE
Confidence 46789999999999999999999999999999999999986421 23688899999999 99999999999999
Q ss_pred EEEEeCcCc
Q 028542 187 KVTVPKVKE 195 (207)
Q Consensus 187 ~I~lPK~~~ 195 (207)
.|+|+|.++
T Consensus 74 ~i~L~K~~~ 82 (92)
T 2xcm_C 74 EICLAKADI 82 (92)
T ss_dssp EEEEEBSSS
T ss_pred EEEEEcCCC
Confidence 999999754
No 14
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=99.00 E-value=1.8e-09 Score=80.64 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=73.3
Q ss_pred CcceeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCE
Q 028542 106 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 185 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGv 185 (207)
..+.+++.++.+.+.|.+.+||+++++++|.++++.|.|++.... ...|...+.|+..| +++..++.+.+|.
T Consensus 8 ~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~-------~~~y~~~~~L~~~I-~~e~s~~~~~~~~ 79 (114)
T 1rl1_A 8 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPS-------GEDYNLKLELLHPI-IPEQSTFKVLSTK 79 (114)
T ss_dssp CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTT-------SSEEEEEECBSSCC-CGGGEEEEECSSS
T ss_pred CCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCC-------CcEEEEEeeCCCcC-CccccEEEEECCE
Confidence 356789999999999999999999999999999999999987421 24788999999999 9999999999999
Q ss_pred EEEEEeCcCc
Q 028542 186 LKVTVPKVKE 195 (207)
Q Consensus 186 L~I~lPK~~~ 195 (207)
|.|+|+|..+
T Consensus 80 l~i~L~K~~~ 89 (114)
T 1rl1_A 80 IEIKLKKPEA 89 (114)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEcCCC
Confidence 9999999754
No 15
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=4.3e-06 Score=62.67 Aligned_cols=79 Identities=15% Similarity=0.361 Sum_probs=71.3
Q ss_pred CcceeeEEEcCCeEEEEEEcCCCC--cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEE--
Q 028542 106 LRRGWDAKETDDALNLSIDMPGLG--KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEM-- 181 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~~dLPG~~--~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~-- 181 (207)
..|.+.+.++++.++|.+.+|.+. ..++++.++++.+..... .|--++.||..+.+.+.-+|+|
T Consensus 16 iTP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~------------PYyLRL~lP~~vved~~~~A~YD~ 83 (115)
T 3eud_A 16 ITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS------------PYYLRLRFPHELIDDERSTAQYDS 83 (115)
T ss_dssp BCCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEET------------TEEEEEECSSCEECSTTCEEEEET
T ss_pred eCCcEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecC------------CeEEEEecCcceecCCCcceEEeC
Confidence 578899999999999999999877 789999999999999987 7888999999997778889999
Q ss_pred eCCEEEEEEeCcCcc
Q 028542 182 KNGVLKVTVPKVKEE 196 (207)
Q Consensus 182 ~nGvL~I~lPK~~~~ 196 (207)
++|.++|++||..+-
T Consensus 84 d~g~~~v~lpK~~~G 98 (115)
T 3eud_A 84 KDECINVKVAKLNKN 98 (115)
T ss_dssp TTTEEEEEEEESSTT
T ss_pred CCcEEEEEEcCCcCC
Confidence 589999999997543
No 16
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.1e-06 Score=67.83 Aligned_cols=78 Identities=15% Similarity=0.362 Sum_probs=70.3
Q ss_pred CcceeeEEEcCCeEEEEEEcCCCC--cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEE--
Q 028542 106 LRRGWDAKETDDALNLSIDMPGLG--KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEM-- 181 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~~dLPG~~--~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~-- 181 (207)
..|.+.+..+++.++|.+.+|... ..++++.+++..+..... .|.-++.||..|.+.+..+|+|
T Consensus 2 iTP~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~------------PYyLRL~LP~~V~e~~~~kA~YD~ 69 (134)
T 2k8q_A 2 ITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS------------PYYLRLRFPHELIDDERSTAQYDS 69 (134)
T ss_dssp CCSEEEEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEECSS------------SSCEEECCSSCEECCSSCEEEEET
T ss_pred cCceEEEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEecC------------CeEEEecCCCeeecCCCcceeEec
Confidence 367889999999999999999999 899999999999999876 7778899999997778899999
Q ss_pred eCCEEEEEEeCcCc
Q 028542 182 KNGVLKVTVPKVKE 195 (207)
Q Consensus 182 ~nGvL~I~lPK~~~ 195 (207)
+.|.|+|++||..+
T Consensus 70 d~~~~~VtLpK~~~ 83 (134)
T 2k8q_A 70 KDECINVKVAKLNK 83 (134)
T ss_dssp TTTEEEEEEEESST
T ss_pred cCCEEEEEEeCCCC
Confidence 58999999999754
No 17
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=98.22 E-value=4.4e-06 Score=74.57 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=63.3
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEE
Q 028542 108 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 187 (207)
Q Consensus 108 p~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~ 187 (207)
.++.|.+. .|.+++.|||+++++|++.-.++.|+|++. .|.|.|.||..+....-..|.|+||.|+
T Consensus 298 ~~~~i~~~--~~~~~l~lP~~~~~~~~l~~~gdeL~v~~g------------~~rR~i~LP~~L~~~~v~~A~~~~~~L~ 363 (374)
T 3igf_A 298 KPITIDTH--NRQVRLFLPGFDKKQVKLTQYGPEVTVEAG------------DQRRNIFLPPALSGRPITGAKFQNNYLI 363 (374)
T ss_dssp CSEEEETT--TTEEEEECTTCCGGGCEEEEETTEEEEEET------------TEEEEEECCTTTTTCCEEEEEEETTEEE
T ss_pred CCEEEEec--cEEEEEECCCCCHHHeEEEEECCeEEEEEC------------CEeecccCCHHHcCCCccccEEECCEEE
Confidence 34555444 899999999999999999999999999985 8999999999987777889999999999
Q ss_pred EEEeCc
Q 028542 188 VTVPKV 193 (207)
Q Consensus 188 I~lPK~ 193 (207)
|++-..
T Consensus 364 i~~~~~ 369 (374)
T 3igf_A 364 ISFLEH 369 (374)
T ss_dssp EEECCC
T ss_pred EEEehh
Confidence 998654
No 18
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=0.0002 Score=54.19 Aligned_cols=80 Identities=14% Similarity=0.266 Sum_probs=69.2
Q ss_pred ceeeEEEcCCeEEEEEEcCCC---CcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEE-CCCCCCCCcceEEEEeC
Q 028542 108 RGWDAKETDDALNLSIDMPGL---GKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRID-LPEKLYRTDQIKAEMKN 183 (207)
Q Consensus 108 p~~di~e~~d~y~l~~dLPG~---~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~-LP~~v~d~~~IkA~~~n 183 (207)
+.+++.++.+.+.|.+.+||+ .+++|.|.+..+.|.|.+.... ...|.-.+. |-..| ++++-+..+..
T Consensus 21 ~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~-------~~~y~~~~~~L~~~I-~~e~S~~~v~~ 92 (127)
T 1x5m_A 21 SNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLN-------GKSYSMIVNNLLKPI-SVEGSSKKVKT 92 (127)
T ss_dssp CSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCS-------SSCEEEEEECBSSCC-CTTTCEEEEET
T ss_pred cEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCC-------CCcEEEEhHHhcCcc-CcccCEEEEeC
Confidence 468999999999999999999 8999999999999999885321 135777885 99999 99999999999
Q ss_pred CEEEEEEeCcCc
Q 028542 184 GVLKVTVPKVKE 195 (207)
Q Consensus 184 GvL~I~lPK~~~ 195 (207)
+.+.|+|-|..+
T Consensus 93 ~kVei~L~K~~~ 104 (127)
T 1x5m_A 93 DTVLILCRKKVE 104 (127)
T ss_dssp TEEEEEEECSSS
T ss_pred CEEEEEEEECCC
Confidence 999999999764
No 19
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=97.82 E-value=0.00041 Score=52.28 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCcceeeEEEcCCeEEEEEEcC-CC-CcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEe
Q 028542 105 GLRRGWDAKETDDALNLSIDMP-GL-GKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMK 182 (207)
Q Consensus 105 ~~~p~~di~e~~d~y~l~~dLP-G~-~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~ 182 (207)
+..+.+.+.++.+.+.|.+.|| |+ +.++|+|.+..+.|.|.+.... ...+.-...|...| +++.-+..++
T Consensus 17 ~~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~-------~~~~~~~~~L~~~I-~~e~S~w~i~ 88 (124)
T 1wgv_A 17 AVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEEN-------GERVLMEGKLTHKI-NTESSLWSLE 88 (124)
T ss_dssp BCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSS-------SEEEEEEEEBSSCB-CTTTCEEEEC
T ss_pred CcCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccC-------CCceEEcccccCcC-CCcCCEEEEe
Confidence 4567899999999999999999 87 8999999999999999875311 11234557799999 9999999998
Q ss_pred CCE-EEEEEeCcCc
Q 028542 183 NGV-LKVTVPKVKE 195 (207)
Q Consensus 183 nGv-L~I~lPK~~~ 195 (207)
+|- |.|+|-|...
T Consensus 89 ~~k~v~i~L~K~~~ 102 (124)
T 1wgv_A 89 PGKCVLVNLSKVGE 102 (124)
T ss_dssp TTSEEEEEECBSSS
T ss_pred CCCEEEEEEEECCC
Confidence 885 9999999754
No 20
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=97.78 E-value=0.00028 Score=53.06 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=67.4
Q ss_pred CCCcceeeEEEcCCeEEEEEEcC-C--CCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEE
Q 028542 104 GGLRRGWDAKETDDALNLSIDMP-G--LGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAE 180 (207)
Q Consensus 104 ~~~~p~~di~e~~d~y~l~~dLP-G--~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~ 180 (207)
|+..+.+.+.++.+.+.|.+.|| | ++.++|+|.+..+.|.|..... .+.-...|...| +++.....
T Consensus 13 G~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~----------~~~~~g~L~~~I-~~deS~w~ 81 (121)
T 3qor_A 13 GADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQ----------PAIIDGELYNEV-KVEESSWL 81 (121)
T ss_dssp SCBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTS----------CCSEEEEBSSCB-CGGGCEEE
T ss_pred CCcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCc----------ceEEeccccccc-cccccEEE
Confidence 35678899999999999999999 4 7899999999999999876421 122345789999 89999999
Q ss_pred EeCC-EEEEEEeCcCc
Q 028542 181 MKNG-VLKVTVPKVKE 195 (207)
Q Consensus 181 ~~nG-vL~I~lPK~~~ 195 (207)
+++| .|.|+|-|...
T Consensus 82 i~~~~~i~i~L~K~~~ 97 (121)
T 3qor_A 82 IADGAVVTVHLEKINK 97 (121)
T ss_dssp EETTTEEEEEEEBSSS
T ss_pred EcCCCEEEEEEEECCC
Confidence 9998 99999999754
No 21
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=97.76 E-value=0.00011 Score=55.91 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=67.2
Q ss_pred CCCcceeeEEEcCCeEEEEEEcC-C--CCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEE
Q 028542 104 GGLRRGWDAKETDDALNLSIDMP-G--LGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAE 180 (207)
Q Consensus 104 ~~~~p~~di~e~~d~y~l~~dLP-G--~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~ 180 (207)
|+..+.+.+.++.+...|.+.|| | +++++|+|.+..+.|.|..... .+.-...|...| +++.-...
T Consensus 4 g~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~----------~~~~~~~L~~~I-~~e~s~w~ 72 (131)
T 1wfi_A 4 GSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQ----------PPVVDGELYNEV-KVEESSWL 72 (131)
T ss_dssp SSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTS----------CCSBCSCBSSCB-CSTTCEEE
T ss_pred CCCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCc----------eEEEeccccccc-ccccCEEE
Confidence 45678899999999999999999 6 8999999999999999987421 011234578889 89999999
Q ss_pred EeCC-EEEEEEeCcCc
Q 028542 181 MKNG-VLKVTVPKVKE 195 (207)
Q Consensus 181 ~~nG-vL~I~lPK~~~ 195 (207)
+++| .|.|+|-|..+
T Consensus 73 i~~~k~v~i~L~K~~~ 88 (131)
T 1wfi_A 73 IEDGKVVTVHLEKINK 88 (131)
T ss_dssp EETTTEEEEEEEBSSS
T ss_pred EcCCCEEEEEEEECCC
Confidence 9998 89999999764
No 22
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=97.75 E-value=0.00017 Score=55.50 Aligned_cols=88 Identities=9% Similarity=0.107 Sum_probs=70.8
Q ss_pred cceeeEEEc-CCeEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccc--cCce---eeEEEEEEECCCCCCCCcceEEE
Q 028542 107 RRGWDAKET-DDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE--DEES---VRRYTSRIDLPEKLYRTDQIKAE 180 (207)
Q Consensus 107 ~p~~di~e~-~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~--~e~~---~~~f~r~i~LP~~v~d~~~IkA~ 180 (207)
.+.++++++ .+.+.|.+.++++.+++++|.+..+.|.|......... ..-. ...|.-.+.|-..| ++++-+..
T Consensus 19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I-~pe~S~~~ 97 (134)
T 1wh0_A 19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLI-EPEQCTFC 97 (134)
T ss_dssp CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCE-EEEEEEEE
T ss_pred CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccC-CchhCEEE
Confidence 567899999 99999999999999999999999999999986432100 0000 12677788899999 89998899
Q ss_pred EeCCEEEEEEeCcCc
Q 028542 181 MKNGVLKVTVPKVKE 195 (207)
Q Consensus 181 ~~nGvL~I~lPK~~~ 195 (207)
+..+-+.|+|.|...
T Consensus 98 v~~~kIeI~L~K~e~ 112 (134)
T 1wh0_A 98 FTASRIDICLRKRQS 112 (134)
T ss_dssp ECSSEEEEEEEESSS
T ss_pred EeCCEEEEEEEECCC
Confidence 999999999999753
No 23
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=97.68 E-value=0.00029 Score=53.26 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=67.2
Q ss_pred eeeEEEcCCeEEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEE
Q 028542 109 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKV 188 (207)
Q Consensus 109 ~~di~e~~d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I 188 (207)
.++++++.+.+.|.+.+|+. ++++|.++.+.|.+++.... ....|.-.+.|-..| +++..+..+.++.+.|
T Consensus 5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~------~~~~y~~~l~L~~~I-~~e~S~~~v~~~kiei 75 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGS------DNFKHLNEIDLFHCI-DPNDSKHKRTDRSILC 75 (125)
T ss_dssp CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETT------TTEEEEEEEEBSSCE-EEEEEEEEECSSCEEE
T ss_pred ceeEEeCCCEEEEEEEecCC--CceEEEEECCEEEEEEEeCC------CCceEEEEEEcccee-ccccCEEEECCCEEEE
Confidence 69999999999999999995 79999999999999986421 113688889999999 9999999998899999
Q ss_pred EEeCcCc
Q 028542 189 TVPKVKE 195 (207)
Q Consensus 189 ~lPK~~~ 195 (207)
+|.|..+
T Consensus 76 ~L~K~~~ 82 (125)
T 1ejf_A 76 CLRKGES 82 (125)
T ss_dssp EEEESST
T ss_pred EEEECCC
Confidence 9999753
No 24
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=97.57 E-value=0.00056 Score=52.03 Aligned_cols=76 Identities=9% Similarity=0.222 Sum_probs=62.8
Q ss_pred cceeeEEEcCCeEEEEEEcC-CCCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCE
Q 028542 107 RRGWDAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 185 (207)
Q Consensus 107 ~p~~di~e~~d~y~l~~dLP-G~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGv 185 (207)
.+.+.+.++.+.+.|.+.|| |++.++|+|.+..+.|.|.+... . .-...|...| +++.-...+++|-
T Consensus 4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~g~----------~-~~~~~L~~~I-~~e~S~w~i~~~k 71 (131)
T 2o30_A 4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGE----------I-VIDGELLHEV-DVSSLWWVINGDV 71 (131)
T ss_dssp -CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEETTE----------E-EEEEEBSSCE-EEEEEEEEEETTE
T ss_pred CCcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEECCE----------e-eEcccccccc-ccccCEEEEeCCE
Confidence 46789999999999999996 89999999999999999987411 1 3346789999 9999999999999
Q ss_pred EEEEEeCcC
Q 028542 186 LKVTVPKVK 194 (207)
Q Consensus 186 L~I~lPK~~ 194 (207)
|.|+|-|..
T Consensus 72 v~i~L~K~~ 80 (131)
T 2o30_A 72 VDVNVTKKR 80 (131)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEECC
Confidence 999999973
No 25
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=97.48 E-value=0.0012 Score=51.94 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=66.3
Q ss_pred CcceeeEEEcCCeEEEEEEcC-CCCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCC
Q 028542 106 LRRGWDAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNG 184 (207)
Q Consensus 106 ~~p~~di~e~~d~y~l~~dLP-G~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nG 184 (207)
..+.+.+.++.+.+.|.+.|| |++.++|+|.+..+.|.|.... . .+ -...|...| +++.-...+++|
T Consensus 12 ~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~kg--------~--~~-l~g~L~~~I-~~eeS~w~i~~~ 79 (157)
T 2rh0_A 12 GTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGG--------R--EI-LKGKLFDST-IADEGTWTLEDR 79 (157)
T ss_dssp ECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEETT--------E--EE-EEEEBSSCB-CGGGCEEEEECC
T ss_pred CCCcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEECC--------E--EE-Eeecccccc-CccccEEEEcCC
Confidence 457789999999999999998 8999999999999999998741 1 22 346789999 999999999988
Q ss_pred E-EEEEEeCcCc
Q 028542 185 V-LKVTVPKVKE 195 (207)
Q Consensus 185 v-L~I~lPK~~~ 195 (207)
- |.|+|-|..+
T Consensus 80 k~v~I~L~K~~~ 91 (157)
T 2rh0_A 80 KMVRIVLTKTKR 91 (157)
T ss_dssp CEEEEEEEBSSC
T ss_pred cEEEEEEEEcCC
Confidence 5 9999999864
No 26
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.22 E-value=0.00092 Score=52.25 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=66.2
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCcCceEEEEE-CCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCE
Q 028542 107 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLE-QNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 185 (207)
Q Consensus 107 ~p~~di~e~~d~y~l~~dLPG~~~edV~V~v~-~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGv 185 (207)
.|.++++++.+.+.|.+.+|++ ++++|.++ .+.|.+++. .. ....|.-.+.|-..| +++ -+..+...-
T Consensus 4 ~P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~-~~------~~~~y~~~l~L~~~I-dpe-S~~~v~~~k 72 (150)
T 2kmw_A 4 NPEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSAL-GA------QGERFEFSLELYGKI-MTE-YRKNVGLRN 72 (150)
T ss_dssp CCCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEE-TT------TTEEEEEEEEBSSCE-EEE-EEEEEESSS
T ss_pred CCcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEE-cC------CCceEEEEeEhhhcc-ccc-ceEEecCCE
Confidence 5779999999999999999997 58999999 789999986 11 114688889999999 899 888888888
Q ss_pred EEEEEeCcCc
Q 028542 186 LKVTVPKVKE 195 (207)
Q Consensus 186 L~I~lPK~~~ 195 (207)
+.|+|.|..+
T Consensus 73 Iei~L~K~e~ 82 (150)
T 2kmw_A 73 IIFSIQKEER 82 (150)
T ss_dssp EEEEEEECCS
T ss_pred EEEEEEECCC
Confidence 9999999754
No 27
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00023 Score=54.63 Aligned_cols=84 Identities=11% Similarity=0.214 Sum_probs=61.1
Q ss_pred cceeeEEEcCCe-------EEEEEEcCCCCcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEE
Q 028542 107 RRGWDAKETDDA-------LNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKA 179 (207)
Q Consensus 107 ~p~~di~e~~d~-------y~l~~dLPG~~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA 179 (207)
.|.+.+.++.+. +.|.+.+|+++ +++|.+..+.|.+++....... ......|.-.+.|...| +++..+.
T Consensus 6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~~~--~~~V~~~~~~l~~~~~~~~~~g-~~~~~~y~~~l~L~~~I-dpe~S~~ 81 (134)
T 2cg9_X 6 NPQVAWAQRSSTTDPERNYVLITVSIADCD--APELTIKPSYIELKAQSKPHVG-DENVHHYQLHIDLYKEI-IPEKTMH 81 (134)
T ss_dssp -----CBCCCEEECCCSSEEEEECCCSSEE--SCCCCBCSSEEEECCEEC--------CEEBCEEEECSSCC-CSSSEEE
T ss_pred CCCEEEEeCCCCcCCcCCEEEEEEEecCCC--ceEEEEECCEEEEEEecccccC-CccCceEEEEEEChhhc-cccccEE
Confidence 456777777766 99999999974 8999999999999876431000 00124688889999999 9999999
Q ss_pred EEeCCE-EEEEEeCcC
Q 028542 180 EMKNGV-LKVTVPKVK 194 (207)
Q Consensus 180 ~~~nGv-L~I~lPK~~ 194 (207)
.+.++. |.|+|.|..
T Consensus 82 ~v~~~~~vei~L~K~~ 97 (134)
T 2cg9_X 82 KVANGQHYFLKLYKKD 97 (134)
T ss_dssp EECCC--CEEEEEECS
T ss_pred EECCCEEEEEEEEECC
Confidence 999998 999999976
No 28
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=77.03 E-value=9.4 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=27.3
Q ss_pred EEEEEEcC-CCCcCceEEEEECCEEEEEEeeccc
Q 028542 119 LNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKE 151 (207)
Q Consensus 119 y~l~~dLP-G~~~edV~V~v~~~~L~I~g~~~~~ 151 (207)
|.-.+.|| +++.+.|+-.+++|.|+|+..+...
T Consensus 63 f~R~~~LP~~vd~~~i~A~~~~GvL~I~lpK~~~ 96 (102)
T 4fei_A 63 FVRELAFPEPVRPASGVASLAGGVLTVRFEKLRP 96 (102)
T ss_dssp EEEEEECSSCBCTTCCEEEEETTEEEEEEEBSSC
T ss_pred EEEEEECCCCcchhHcEEEEECCEEEEEEEccCc
Confidence 44468899 5899999999999999999876543
No 29
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=74.46 E-value=22 Score=27.02 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=25.2
Q ss_pred EEEEECCCCCCCCcceEEEEeCCEEEEEEeCcC
Q 028542 162 TSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 194 (207)
Q Consensus 162 ~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 194 (207)
.=.+.||. + +.+.|+-.+++|.|+|+.-+..
T Consensus 69 ~v~~dlPG-~-~~edi~V~~~~~~L~I~g~~~~ 99 (161)
T 4eld_A 69 KVIAWLPG-V-NKEDIILNAVGDTLEIRAKRSP 99 (161)
T ss_dssp EEEEECTT-C-CGGGEEEEEETTEEEEEEECCC
T ss_pred EEEEECCC-C-ChHhEEEEEECCEEEEEEEEcc
Confidence 33355886 6 7899999999999999998765
No 30
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=66.21 E-value=14 Score=25.04 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=28.8
Q ss_pred eEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcC
Q 028542 159 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 194 (207)
Q Consensus 159 ~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 194 (207)
..|.=.+.||. + +.+.|+-.+++|.|+|..-+..
T Consensus 7 ~~~~v~~dlPG-~-~~edi~V~v~~~~L~I~g~~~~ 40 (85)
T 3q9p_A 7 DRWRVSLDVNH-F-APDELTVKTKDGVVEITGKHAA 40 (85)
T ss_dssp CEEEEEEECTT-T-CCSEEEEEEETTEEEEEEEEC-
T ss_pred CEEEEEEECCC-C-ChHHEEEEEECCEEEEEEEEcc
Confidence 37888899986 6 8999999999999999997654
No 31
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=63.18 E-value=22 Score=24.46 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=27.8
Q ss_pred EEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcCc
Q 028542 160 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 195 (207)
Q Consensus 160 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~~ 195 (207)
.|.=.+.||. + +.++|+-.+++|.|+|+.-+...
T Consensus 15 ~~~v~~~lPG-~-~~edi~v~~~~~~L~I~g~~~~~ 48 (100)
T 3gla_A 15 HFVLYADLPG-I-DPSQIEVQMDKGILSIRGERKSE 48 (100)
T ss_dssp EEEEEEECTT-S-CGGGCEEEEETTEEEEEEEECCG
T ss_pred EEEEEEECCC-C-CHHHEEEEEECCEEEEEEEEcCc
Confidence 5666677985 6 78999999999999999876543
No 32
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=61.00 E-value=23 Score=25.17 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=30.2
Q ss_pred cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECC-CCCCCCcceEEEEeCCE---EEEEEeC
Q 028542 130 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLP-EKLYRTDQIKAEMKNGV---LKVTVPK 192 (207)
Q Consensus 130 ~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP-~~v~d~~~IkA~~~nGv---L~I~lPK 192 (207)
|+.|+|+++++.++|+|... ..+ ..|| .. |+...++|. |.|..+.
T Consensus 20 P~gV~V~i~~~~VtVKGPkG----------~L~--~~~~h~~------v~i~~e~~~~~~i~v~~~~ 68 (100)
T 2cql_A 20 PENVDITLKGRTVIVKGPRG----------TLR--RDFNHIN------VELSLLGKKKKRLRVDKWW 68 (100)
T ss_dssp CSSCEEEEETTEEEEEETTE----------EEE--EECCSSC------CEEEEECSSSCEEEEECCS
T ss_pred CCCCEEEEeCCEEEEECCCc----------eEE--EEeccCc------EEEEEcCCceeEEEEEccC
Confidence 57899999999999999632 333 3444 33 455667766 7776554
No 33
>2nwt_A UPF0165 protein AF_2212; HOMO dimer protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: b.129.2.2
Probab=59.79 E-value=9.9 Score=25.53 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=13.2
Q ss_pred cceEEEEeCCEEEEEEe
Q 028542 175 DQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 175 ~~IkA~~~nGvL~I~lP 191 (207)
..|+|.|+||||+--=|
T Consensus 3 k~IeAiYEnGVfkPLe~ 19 (69)
T 2nwt_A 3 KIIEAVYENGVFKPLQK 19 (69)
T ss_dssp CCEEEEEETTEEEESSC
T ss_pred ceEEEEEECCEEeECCc
Confidence 46999999999975333
No 34
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=58.57 E-value=15 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=28.1
Q ss_pred EEEEEEcC-CCCcCceEEEE-ECCEEEEEEeecc
Q 028542 119 LNLSIDMP-GLGKEDVRVSL-EQNTLVIRGEGGK 150 (207)
Q Consensus 119 y~l~~dLP-G~~~edV~V~v-~~~~L~I~g~~~~ 150 (207)
|.-.+.|| +++.+.|+-++ ++|.|+|+.....
T Consensus 56 F~R~~~LP~~vd~~~i~A~~s~nGvL~I~lPK~~ 89 (101)
T 2wj5_A 56 FHRRYRLPPGVDPAAVTSALSPEGVLSIQATPAS 89 (101)
T ss_dssp EEEEEECCTTBCTTCCEEEECTTSEEEEEECBCC
T ss_pred EEEEEECCCCcChhHCEEEECCCCEEEEEEECCC
Confidence 77889999 68999999999 7999999987543
No 35
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=56.13 E-value=18 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=28.9
Q ss_pred EEEEEEcC-CCCcCceEEEE-ECCEEEEEEeeccc
Q 028542 119 LNLSIDMP-GLGKEDVRVSL-EQNTLVIRGEGGKE 151 (207)
Q Consensus 119 y~l~~dLP-G~~~edV~V~v-~~~~L~I~g~~~~~ 151 (207)
|.=.+.|| +++.+.|+-.+ ++|.|+|+..+...
T Consensus 57 F~R~~~LP~~vd~~~i~A~~s~~GvL~I~~PK~~~ 91 (106)
T 3l1e_A 57 FHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPS 91 (106)
T ss_dssp EEEEEECCTTBCTTSCEEEECTTSEEEEEEEBCCC
T ss_pred EEEEEECCCCcChhHcEEEECCCCEEEEEEEccCc
Confidence 77779999 78999999999 79999999976554
No 36
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=55.23 E-value=54 Score=23.47 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=24.7
Q ss_pred EEECCCCCCCCcceEEEEeC-CEEEEEEeCcCc
Q 028542 164 RIDLPEKLYRTDQIKAEMKN-GVLKVTVPKVKE 195 (207)
Q Consensus 164 ~i~LP~~v~d~~~IkA~~~n-GvL~I~lPK~~~ 195 (207)
.+.||. + +.++|+-.+.+ |.|+|+.-+...
T Consensus 39 ~~~lPG-~-~~edi~V~v~~~~~L~I~g~~~~~ 69 (123)
T 3aab_A 39 VADLAG-F-NKEKIKARVSGQNELIIEAEREIT 69 (123)
T ss_dssp EEECCS-C-CGGGCEEEEETTTEEEEEEECCCC
T ss_pred EEECCC-C-CHHHEEEEEeCCCEEEEEEEEecc
Confidence 355885 6 78999999999 999999987643
No 37
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=54.91 E-value=28 Score=23.67 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=28.1
Q ss_pred EEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcC
Q 028542 160 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 194 (207)
Q Consensus 160 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 194 (207)
.|.=.+.||. + +.+.|+-.+.+|.|+|..-+..
T Consensus 7 ~~~v~~dlPG-~-~~edi~V~v~~~~L~I~g~~~~ 39 (90)
T 2y1y_A 7 RFSVNLDVKH-F-SPEELKVKVLGDVIEVHGKHEE 39 (90)
T ss_dssp CEEEEEECTT-S-CGGGEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCC-C-cHHHeEEEEECCEEEEEEEEec
Confidence 6777889984 6 7899999999999999987643
No 38
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=54.75 E-value=25 Score=26.54 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=27.4
Q ss_pred eEEEEEEcC-CCCcCceEEEEECCEEEEEEeecc
Q 028542 118 ALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGK 150 (207)
Q Consensus 118 ~y~l~~dLP-G~~~edV~V~v~~~~L~I~g~~~~ 150 (207)
.|.-.+.|| +++.+.|+-++++|.|+|+..+..
T Consensus 105 ~F~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~ 138 (151)
T 1gme_A 105 KFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAE 138 (151)
T ss_dssp CEEEEEECSSCCCGGGCEEEEETTEEEEEEECCC
T ss_pred EEEEEEECCCCccccceEEEEECCEEEEEEEccC
Confidence 355568898 689999999999999999986543
No 39
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=52.12 E-value=43 Score=26.28 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=32.7
Q ss_pred cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028542 130 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 130 ~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~ 193 (207)
|+.|+|+++++.++|+|.. +..++ .|+..+ +...+||.|.|+.+..
T Consensus 11 P~gV~V~i~~~~VtVkGpk----------G~L~~--~~~~~v------~i~~~~~~l~v~~~~~ 56 (177)
T 1rl6_A 11 PAGVTVTVNGNTVTVKGPK----------GELTR--TFHPDM------TITVEGNVITVTRPSD 56 (177)
T ss_dssp CTTCEEEEETTEEEEEETT----------EEEEE--ECCTTC------EEEEETTEEEEECSCC
T ss_pred CCCCEEEEeCCEEEEECCC----------eEEEE--EcCCCE------EEEEeCCEEEEEcCCC
Confidence 5789999999999999963 23444 345444 4457899988876643
No 40
>3jx8_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.16A {Parabacteroides distasonis atcc 8503}
Probab=49.49 E-value=84 Score=25.25 Aligned_cols=31 Identities=23% Similarity=0.111 Sum_probs=19.5
Q ss_pred CeEEEEEEcCCCCcCceEEEEECCEEEEEEe
Q 028542 117 DALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 147 (207)
Q Consensus 117 d~y~l~~dLPG~~~edV~V~v~~~~L~I~g~ 147 (207)
+.+.|+++-+.--.+.|++.+++++|.|.-+
T Consensus 41 ~~~~V~i~~~~nl~~~i~~~v~~g~L~I~~~ 71 (250)
T 3jx8_A 41 KAPYLSVTIDENLFDYLVTEVEGGTLKIYPK 71 (250)
T ss_dssp SCCEEEEEEEGGGGGGEEEEEETTEEEEEEC
T ss_pred CCceEEEEECccccceEEEEEECCEEEEEEc
Confidence 3555555555444567777777777777765
No 41
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=47.39 E-value=49 Score=26.82 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=32.1
Q ss_pred cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028542 130 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 130 ~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~ 193 (207)
|+.|+|+++++.++|+|... ..++. |+..+ +...+||.|.|+.+..
T Consensus 39 P~gV~V~i~~~~VtVKGPkG----------~L~~~--~~~~v------~i~~e~~~i~v~~~~~ 84 (212)
T 1nkw_E 39 PSGVTVNAQDGVFKVKGPKG----------ELTVP--YNTEL------TVRQDGDQLLVERPSD 84 (212)
T ss_pred CCCcEEEEeCCEEEEECCCE----------EEEEE--CCCCe------EEEEECCEEEEEcCCC
Confidence 47889999999999999632 33333 34444 4567899988876643
No 42
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=46.87 E-value=25 Score=24.81 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCC-CCcCceEEEEECCEEEEEEeec
Q 028542 116 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGG 149 (207)
Q Consensus 116 ~d~y~l~~dLPG-~~~edV~V~v~~~~L~I~g~~~ 149 (207)
+..|.+.++|++ +.+++.+..+.++.|.|.-...
T Consensus 53 ~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L~K~ 87 (114)
T 1rl1_A 53 GEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKP 87 (114)
T ss_dssp SSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECS
T ss_pred CcEEEEEeeCCCcCCccccEEEEECCEEEEEEEcC
Confidence 567999999997 7999999999999999887654
No 43
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=46.76 E-value=19 Score=28.37 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=32.3
Q ss_pred cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028542 130 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 193 (207)
Q Consensus 130 ~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~ 193 (207)
|+.|+|+++++.++|+|... ..++.|. +.. ++...++|.|.|+.+..
T Consensus 9 P~gV~v~i~~~~vtVkGpkG----------~L~~~~~-~~~------v~i~~~~~~i~v~~~~~ 55 (178)
T 1vq8_E 9 PEDVDAEQDHLDITVEGDNG----------SVTRRLW-YPD------IDVSVDGDTVVIESDED 55 (178)
T ss_dssp CTTCEEEEETTEEEEEETTE----------EEEEECC-CTT------CEEEEETTEEEEECSCC
T ss_pred CCCCEEEEeCCEEEEECCCe----------EEEEEEE-CCe------EEEEEECCEEEEEcCCC
Confidence 47899999999999999632 3333331 333 44567899988876643
No 44
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=45.64 E-value=33 Score=26.99 Aligned_cols=44 Identities=18% Similarity=0.447 Sum_probs=31.3
Q ss_pred cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028542 130 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 130 ~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 191 (207)
|+.|+|+++++.++|+|... ..++. |+..+ +-.++++.|.|..+
T Consensus 12 P~gV~v~i~~~~v~VkGpkG----------~L~~~--~~~~v------~i~~~~~~l~v~~~ 55 (180)
T 3v2d_H 12 PKGVSVEVAPGRVKVKGPKG----------ELEVP--VSPEM------RVVVEEGVVRVERP 55 (180)
T ss_dssp CTTCEEEEETTEEEEECSSC----------EEEEE--CCTTS------EEEEETTEEEEECS
T ss_pred CCCcEEEEeCCEEEEEeCCc----------EEEEE--eCCCE------EEEEECCEEEEEEC
Confidence 58899999999999999643 33333 44444 34567998888754
No 45
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics, joint center F structural genomics, JCSG; HET: PG4; 2.07A {Bacteroides fragilis nctc 9343}
Probab=43.30 E-value=43 Score=26.57 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcCceEEEEECCEEEEEEe
Q 028542 118 ALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 147 (207)
Q Consensus 118 ~y~l~~dLPG~~~edV~V~v~~~~L~I~g~ 147 (207)
.+.|+++-+.--.+.|++.+++++|.|.-+
T Consensus 41 ~~~V~i~g~~nl~~~i~~~v~~g~L~I~~~ 70 (221)
T 3pet_A 41 KTDLQIYGPDNIVALIQVAVKDNTLFLSID 70 (221)
T ss_dssp CCEEEEEEEHHHHTTEEEEEETTEEEEEEC
T ss_pred cEEEEEEEChhhcceEEEEEECCEEEEEEc
Confidence 566666654433467888888888888765
No 46
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=41.71 E-value=20 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCeEEEEEEcCC-CCcCceEEEEECCEEEEEEeec
Q 028542 116 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGG 149 (207)
Q Consensus 116 ~d~y~l~~dLPG-~~~edV~V~v~~~~L~I~g~~~ 149 (207)
+..|.+.++|++ +.+++.+..+.++.|.|.-...
T Consensus 46 ~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~ 80 (92)
T 2xcm_C 46 EDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKA 80 (92)
T ss_dssp SCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBS
T ss_pred CcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcC
Confidence 357999999997 6899999999999988887654
No 47
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=40.02 E-value=86 Score=24.79 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=31.8
Q ss_pred cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEE--eCCEEEEEEeC
Q 028542 130 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEM--KNGVLKVTVPK 192 (207)
Q Consensus 130 ~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~--~nGvL~I~lPK 192 (207)
|+.|+|+++++.++|+|... .-++. |+. ..++-.+ +++.|.|..+.
T Consensus 13 P~gV~v~i~~~~V~VkGPkG----------~L~~~--~~~-----~~v~i~~~~~~~~l~v~~~~ 60 (190)
T 3iz5_F 13 PEGVTVQVAAKVVTVEGPRG----------KLTRN--FKH-----LNLDFQLLEGGRKLQVDAWF 60 (190)
T ss_dssp CTTCEEEEETTEEEEEETTE----------EEEEE--CCC-----TTEEEEEETTTTEEEEEESC
T ss_pred CCCCEEEEeCCEEEEECCCc----------eEEEE--ccC-----CcEEEEEEcCCCEEEEEECC
Confidence 58899999999999999632 33333 331 1245556 88998888653
No 48
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=37.79 E-value=49 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=27.2
Q ss_pred EEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcC
Q 028542 160 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 194 (207)
Q Consensus 160 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 194 (207)
.|.=.+.||. + +.+.|+-++.+|.|+|+.-+..
T Consensus 74 ~~~v~~dlPG-~-~~edI~V~v~~~~L~I~g~~~~ 106 (175)
T 2klr_A 74 RFSVNLDVKH-F-SPEELKVKVLGDVIEVHGKHEE 106 (175)
T ss_dssp EEEEEECCSS-C-CGGGEEEEEETTEEEEEEEEEE
T ss_pred eEEEEEECCC-C-ChHHEEEEEECCEEEEEEEEcc
Confidence 5666677985 6 7899999999999999987643
No 49
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.77 E-value=32 Score=27.19 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=30.9
Q ss_pred cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028542 130 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 130 ~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 191 (207)
|+.|+|+++++.++|+|... .-++. |+. ..++-.++++.|.|..+
T Consensus 14 P~gV~v~i~~~~V~VkGpkG----------~L~~~--~~~-----~~v~i~~~~~~l~v~~~ 58 (184)
T 3j21_F 14 PEGVEVTVEGYKVKVKGPKG----------ELERE--FFW-----PGIQIFTEDGNVVIYKD 58 (184)
T ss_dssp CSSCEEEESSSEEEEECSSC----------EEEEE--CCC-----TTCEEEEETTEEEEECS
T ss_pred CCCcEEEEeCCEEEEEcCCe----------EEEEE--ecC-----CcEEEEEeCCEEEEEEC
Confidence 48899999999999999643 33343 321 12445678998888754
No 50
>3ljy_A Putative adhesin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipoprotein; HET: PGE; 2.41A {Parabacteroides distasonis}
Probab=35.70 E-value=1.5e+02 Score=23.61 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=0.0
Q ss_pred EEEcCCeEEEEEEcCCCCc----CceEEEEEC---CE-EEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeC
Q 028542 112 AKETDDALNLSIDMPGLGK----EDVRVSLEQ---NT-LVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKN 183 (207)
Q Consensus 112 i~e~~d~y~l~~dLPG~~~----edV~V~v~~---~~-L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~n 183 (207)
|.-.++-..-+.++++|+. ..++|.+.. .. +.|+|. +++ .+.|+.+.+|
T Consensus 6 ikg~g~~vt~~~~v~~F~~I~v~~~~~V~l~qg~~~~~V~i~~~---------------------~nl--~~~i~~~v~~ 62 (243)
T 3ljy_A 6 VKGDGKLTSKKISVADYNEIKVDGVIDFNYEQSDDPSTVEVTVD---------------------QNL--HPYVNIEVKD 62 (243)
T ss_dssp EECCSCEEEEEEECCCCSEEEECSSCEEEEEECSSCCEEEEEEE---------------------GGG--GGGEEEEEET
T ss_pred EECCCCEEEEEEEcCCccEEEEcccEEEEEEECCCCcEEEEEEC---------------------cch--hceEEEEEEC
Q ss_pred CEEEEEEeC
Q 028542 184 GVLKVTVPK 192 (207)
Q Consensus 184 GvL~I~lPK 192 (207)
|.|+|.+.+
T Consensus 63 g~L~I~~~~ 71 (243)
T 3ljy_A 63 RVLTIAFKG 71 (243)
T ss_dssp TEEEEEECS
T ss_pred CEEEEEEcC
No 51
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=32.31 E-value=25 Score=25.27 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=15.0
Q ss_pred ceEEEEeCCEEEEEEeC
Q 028542 176 QIKAEMKNGVLKVTVPK 192 (207)
Q Consensus 176 ~IkA~~~nGvL~I~lPK 192 (207)
.+.+++.+|||+|+++.
T Consensus 29 d~D~e~~~gVLti~f~~ 45 (106)
T 1ew4_A 29 DIDCEINGGVLTITFEN 45 (106)
T ss_dssp CCEEEEETTEEEEECTT
T ss_pred CEeeeccCCEEEEEECC
Confidence 48899999999999974
No 52
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=31.75 E-value=1.7e+02 Score=23.04 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=31.3
Q ss_pred cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEE-EeCCEEEEEEeC
Q 028542 130 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAE-MKNGVLKVTVPK 192 (207)
Q Consensus 130 ~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~-~~nGvL~I~lPK 192 (207)
|+.|+|+++++.++|+|... .-.+. |+. + .++-+ .++|.|.|..+.
T Consensus 13 P~gV~v~i~~~~V~VkGPkG----------~L~~~--~~~-~----~v~i~~~~~~~l~v~~~~ 59 (191)
T 3u5e_H 13 PEGVTVSIKSRIVKVVGPRG----------TLTKN--LKH-I----DVTFTKVNNQLIKVAVHN 59 (191)
T ss_dssp CTTCEEEEETTEEEEEETTE----------EEEEE--CTT-T----CCEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEeCCEEEEEcCCe----------EEEEE--ccC-C----cEEEEEecCCeEEEEECC
Confidence 58899999999999999632 33443 442 1 23334 469999988653
No 53
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=30.81 E-value=25 Score=23.57 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.5
Q ss_pred CCcCceEEEEECCEEEEEEee
Q 028542 128 LGKEDVRVSLEQNTLVIRGEG 148 (207)
Q Consensus 128 ~~~edV~V~v~~~~L~I~g~~ 148 (207)
|+.+.|.+....+.|.|+|+.
T Consensus 18 Fd~e~i~L~T~~G~L~IkG~~ 38 (71)
T 2ks0_A 18 FDPKEILLETIQGVLSIKGEK 38 (71)
T ss_dssp ECSSEEEEEETTEEEEEEEEC
T ss_pred ECCCEEEEEeCceEEEEEcCC
Confidence 578899999999999999984
No 54
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=30.25 E-value=26 Score=28.64 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=31.1
Q ss_pred cCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEE-EEeCCEEEEEEeC
Q 028542 130 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKA-EMKNGVLKVTVPK 192 (207)
Q Consensus 130 ~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA-~~~nGvL~I~lPK 192 (207)
|+.|+|+++++.++|+|... ...+ .|+..+ +. ..+||.|.|+.+.
T Consensus 54 P~gV~V~i~~~~VtVKGPkG----------~L~~--~~~~~v------~i~~~e~~~i~v~~~~ 99 (223)
T 3bbo_I 54 PSNVTIALEGQDLKVKGPLG----------ELAL--TYPREV------ELTKEESGFLRVKKTV 99 (223)
T ss_dssp STTSCEEESSSEEEECCSSC----------CEEE--ECCSSC------EEEECSSSCEEEECSS
T ss_pred CCCCEEEEeCCEEEEECCCe----------EEEE--EcCCCE------EEEEecCCEEEEEcCC
Confidence 57788999999999999643 3333 445555 33 4578988887664
No 55
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=30.00 E-value=39 Score=21.22 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=19.0
Q ss_pred CCcCceEEEEECCEEEEEEeecc
Q 028542 128 LGKEDVRVSLEQNTLVIRGEGGK 150 (207)
Q Consensus 128 ~~~edV~V~v~~~~L~I~g~~~~ 150 (207)
+.-+||.|+.++++++++|+.+-
T Consensus 30 lgyndinvtwdgdtvtvegqleg 52 (62)
T 2gjh_A 30 LGYNDINVTWDGDTVTVEGQLEG 52 (62)
T ss_dssp TTCCSCEEEECSSCEEEEEECCC
T ss_pred hCcccceeEEcCCEEEEEeEEcC
Confidence 44578999999999999998653
No 56
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=28.73 E-value=83 Score=22.64 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=30.7
Q ss_pred EEEcCCeEEEEEEc-CCCCcCceEEEEECCEEEEEEeeccc
Q 028542 112 AKETDDALNLSIDM-PGLGKEDVRVSLEQNTLVIRGEGGKE 151 (207)
Q Consensus 112 i~e~~d~y~l~~dL-PG~~~edV~V~v~~~~L~I~g~~~~~ 151 (207)
+.+.++.+.|.+.+ ||.+++.| +.+.++.|.|.......
T Consensus 8 ~~~~~~~v~l~v~V~P~A~r~~I-~g~~~~~LkV~v~ApP~ 47 (108)
T 1n91_A 8 VTVNDDGLVLRLYIQPKASRDSI-VGLHGDEVKVAITAPPV 47 (108)
T ss_dssp EEECSSEEEEEEEEECSSSSCEE-EEECSSCEEEECCCCSS
T ss_pred EEECCCeEEEEEEEeeCCCccee-ecccCCEEEEEEecCCC
Confidence 56778889998877 89999887 45788899998875544
No 57
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=27.28 E-value=56 Score=29.83 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCCCCCCcceEEEEeCCEEEEEEeCcCcccCCceeEeecC
Q 028542 168 PEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 207 (207)
Q Consensus 168 P~~v~d~~~IkA~~~nGvL~I~lPK~~~~~~~~~i~I~Ie 207 (207)
|+.| .+.. .+..++|.|+++||... -.++.++.|
T Consensus 471 P~~V-~p~~-~~~~~~~~~~~~lp~~S----~~vl~l~~~ 504 (504)
T 3ug3_A 471 PNVV-DITS-ETITVDTEFEHTFKPFS----CSVIEVELE 504 (504)
T ss_dssp TTSS-EEEE-EEEEECSEEEEEECTTE----EEEEEEEC-
T ss_pred CCEE-Eeee-eeEecCCEEEEEECCCE----EEEEEEEeC
Confidence 6666 5555 67779999999999862 236666654
No 58
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=26.39 E-value=1.3e+02 Score=23.73 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=32.6
Q ss_pred CcCceEEEEECCEEEEEEeeccccccCceeeEEEEEEECCCCCCCCcceEEEEeCCE---EEEEEeCc
Q 028542 129 GKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV---LKVTVPKV 193 (207)
Q Consensus 129 ~~edV~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGv---L~I~lPK~ 193 (207)
=|+.|+|+++++.++|+|... ..++ .||.. .|+...++|. |.|+.+..
T Consensus 12 IP~gV~V~i~~~~VtVkGpkG----------~L~~--~~~~~-----~v~i~~~~~~~~~i~v~~~~~ 62 (192)
T 2zkr_e 12 IPENVDITLKGRTVIVKGPRG----------TLRR--DFNHI-----NVELSLLGKKKKRLRVDKWWG 62 (192)
T ss_dssp CCTTCEEEEETTEEEEEETTE----------EEEE--ECCSS-----SCEEEEETTTTCEEEEECSCC
T ss_pred cCCCCEEEEeCCEEEEECCCe----------EEEE--EeCCC-----CEEEEEecCceeEEEEEcCCC
Confidence 368899999999999999632 3333 34431 2455678888 77776543
No 59
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=24.51 E-value=97 Score=22.46 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=21.9
Q ss_pred EEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028542 162 TSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 162 ~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 191 (207)
.=+|.||.++ +.+.++..++..-|.|.+.
T Consensus 17 ~i~I~lp~~~-~~kdv~V~i~~~~l~v~~~ 45 (131)
T 2o30_A 17 NIQFPVTGDA-DSSAIKIRMVGKKICVKNQ 45 (131)
T ss_dssp EEEEECC----CCSCEEEEEETTEEEEEET
T ss_pred EEEEECCCCC-CccceEEEEECCEEEEEEC
Confidence 3457899888 8999999999999999873
No 60
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=24.33 E-value=53 Score=24.30 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=14.5
Q ss_pred eEEEEeCCEEEEEEeC
Q 028542 177 IKAEMKNGVLKVTVPK 192 (207)
Q Consensus 177 IkA~~~nGvL~I~lPK 192 (207)
+.+++.+|||+|+++.
T Consensus 49 ~Dve~~~gVLti~f~~ 64 (123)
T 3oeq_A 49 PDVELSHGVMTLEIPA 64 (123)
T ss_dssp CEEEECSSEEEEECTT
T ss_pred eEEEccCCEEEEEECC
Confidence 7899999999999974
No 61
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=23.54 E-value=85 Score=21.59 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.1
Q ss_pred CCCcCceEEEEECCEEEEEEeec
Q 028542 127 GLGKEDVRVSLEQNTLVIRGEGG 149 (207)
Q Consensus 127 G~~~edV~V~v~~~~L~I~g~~~ 149 (207)
.+.-+||.|++++++++++|+.+
T Consensus 73 elgyndinvtfdgdtvtvegqle 95 (106)
T 1qys_A 73 ELGYNDINVTFDGDTVTVEGQLE 95 (106)
T ss_dssp HTTCCEEEEEEETTEEEEEEEC-
T ss_pred HhCCcceeEEEcCCeEEEEeEEc
Confidence 45568999999999999999854
No 62
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=23.26 E-value=2.2e+02 Score=23.04 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=42.0
Q ss_pred EEEEE---EcCCCCcCceEEEEE--CCEEEEEEeeccc-cccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEE
Q 028542 119 LNLSI---DMPGLGKEDVRVSLE--QNTLVIRGEGGKE-GEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVT 189 (207)
Q Consensus 119 y~l~~---dLPG~~~edV~V~v~--~~~L~I~g~~~~~-~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~ 189 (207)
|.+.+ .|||+..+==-+.++ ++.|.+....... ..-+.. ++..+++.|...- |.+.|... .+|.+.|.
T Consensus 13 y~~~~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~-D~EGIa~~-~~g~~~vs 86 (255)
T 3qqz_A 13 YHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVK-DLETIEYI-GDNQFVIS 86 (255)
T ss_dssp CEEEEEEEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCS-SEEEEEEC-STTEEEEE
T ss_pred eEEEEeceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCC-ChHHeEEe-CCCEEEEE
Confidence 45554 489998754346666 4677765443211 111122 6789999998766 88888654 77766654
No 63
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=22.75 E-value=64 Score=23.67 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=42.5
Q ss_pred cCCCCcCceEEEEECCEEEEEEeeccccccC---------ceee-EEEEEEEC-CC----CCC----------CCcceEE
Q 028542 125 MPGLGKEDVRVSLEQNTLVIRGEGGKEGEDE---------ESVR-RYTSRIDL-PE----KLY----------RTDQIKA 179 (207)
Q Consensus 125 LPG~~~edV~V~v~~~~L~I~g~~~~~~~~e---------~~~~-~f~r~i~L-P~----~v~----------d~~~IkA 179 (207)
-|.+++-.|.|.++++.++++|..+...+.. .... ...-.|.+ |. +.. ....++.
T Consensus 2 ~~~~~p~~i~V~v~~G~VTLsG~Vp~~~~k~aa~~a~~~v~Gv~~~V~d~i~V~~~~~p~~~~a~~~aL~~~~~l~~i~V 81 (132)
T 2kgs_A 2 ASALSLSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPGVNVIDQIHVDPVVRSLDFSSAEPVFTASVPIPDFGL 81 (132)
T ss_dssp CCCCCEEEEEEEECSSEEEEEEEESCHHHHHHHHHHHHTTCCTTCEEEECCEECTTCCCCCGGGCHHHHHHHTTCTTCEE
T ss_pred CCcccceeEEEEEECCEEEEEEECCCHHHHHHHHHHHHHhcCCCcceEEeEEEcCCCCCccHHHHHHHHHhcCcCCceEE
Confidence 4778888999999999999999987654321 1122 44444444 22 110 1246788
Q ss_pred EEeCCEEEEEE
Q 028542 180 EMKNGVLKVTV 190 (207)
Q Consensus 180 ~~~nGvL~I~l 190 (207)
+.++|..+|+=
T Consensus 82 ~V~~g~VtLsG 92 (132)
T 2kgs_A 82 KVERDTVTLTG 92 (132)
T ss_dssp EEEETEEEEEC
T ss_pred EEECCEEEEEE
Confidence 88999777753
No 64
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=21.88 E-value=63 Score=24.00 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=15.1
Q ss_pred cceEEEEeCCEEEEEEe
Q 028542 175 DQIKAEMKNGVLKVTVP 191 (207)
Q Consensus 175 ~~IkA~~~nGvL~I~lP 191 (207)
..+.+++.+|||+|+++
T Consensus 40 ~d~D~e~~~gVLti~f~ 56 (129)
T 3t3l_A 40 EDYDVSFGSGVLTVKLG 56 (129)
T ss_dssp TTCEEEEETTEEEEECC
T ss_pred cceeeecCCCEEEEEEc
Confidence 46889999999999996
No 65
>3jx8_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.16A {Parabacteroides distasonis atcc 8503}
Probab=21.61 E-value=1.1e+02 Score=24.47 Aligned_cols=41 Identities=10% Similarity=-0.014 Sum_probs=25.9
Q ss_pred cceeeEEEcCCeEEEEEEcCC---------CCcCceEEEEEC---CEEEEEEe
Q 028542 107 RRGWDAKETDDALNLSIDMPG---------LGKEDVRVSLEQ---NTLVIRGE 147 (207)
Q Consensus 107 ~p~~di~e~~d~y~l~~dLPG---------~~~edV~V~v~~---~~L~I~g~ 147 (207)
.+.+++.-.++.+.|...-.. +.+..++|++.- ..|.+.|.
T Consensus 54 ~~~i~~~v~~g~L~I~~~~~~~~~~~~~~~~~~~~~~v~V~~p~L~~i~~~gs 106 (250)
T 3jx8_A 54 FDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGS 106 (250)
T ss_dssp GGGEEEEEETTEEEEEECBCTTTTTSCBCEEECSCEEEEEEESCCSEEEEESS
T ss_pred cceEEEEEECCEEEEEEcCCccccccceeecCCcEEEEEEEccceeeEEeccc
Confidence 456777778888888887541 223466777652 56666654
Done!