RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028542
(207 letters)
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 84.2 bits (209), Expect = 2e-21
Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 7/96 (7%)
Query: 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEE------SVRRYTSR 164
D KE DA + +D+PG E+++V +E N ++++G+ KE ED+ S R ++ +
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRK 60
Query: 165 IDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERAD 200
LPE D++KA +K+GVL VTVPK++ E+
Sbjct: 61 FVLPEN-ADPDKVKASLKDGVLTVTVPKLEPPEKKP 95
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 83.8 bits (208), Expect = 2e-21
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEE-------SVRRYTS 163
D ETDDA + D+PG KED++V +E L I GE +E E+EE S ++
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSR 60
Query: 164 RIDLPEKLYRTDQIKAEMKNGVLKVTVPK 192
LPE D+IKA ++NGVL +T+PK
Sbjct: 61 SFRLPED-VDPDKIKASLENGVLTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 82.3 bits (204), Expect = 6e-21
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 113 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLY 172
+TDD + +++D+PG+ KED++V +E N L I G+ +E E E S + +LPE
Sbjct: 2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPED-V 60
Query: 173 RTDQIKAEMKNGVLKVTVPK 192
++ KA ++NGVL++T+PK
Sbjct: 61 DPEKSKASLENGVLEITLPK 80
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 77.4 bits (191), Expect = 3e-18
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 68 DFFSDVFDPFSPTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPG 127
F + + F L F E +R D +ETDD ++ ++PG
Sbjct: 1 SPFEAMRNRFDFFPLLRDSPGFDRLFREFGNLPESRPTGTPPVDIEETDDEYRITAELPG 60
Query: 128 LGKEDVRVSLEQNTLVIRGEGGKEGEDEE--------SVRRYTSRIDLPEKLYRTDQIKA 179
+ KED+ +++E NTL IRGE +E E+EE + + LPEK+ + IKA
Sbjct: 61 VDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV-DPEVIKA 119
Query: 180 EMKNGVLKVTVPKVKEEE 197
+ KNG+L VT+PK + EE
Sbjct: 120 KYKNGLLTVTLPKAEPEE 137
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 73.9 bits (182), Expect = 1e-17
Identities = 39/91 (42%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQN-TLVIRGEGGKEGEDEES----VRR----Y 161
D KET +A D+PG+ KEDV+V +E L I GE KE E + V R +
Sbjct: 3 DWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRF 62
Query: 162 TSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 192
R LPE D++KA ++NGVL VTVPK
Sbjct: 63 VRRFRLPENA-DADEVKAFLENGVLTVTVPK 92
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 65.2 bits (160), Expect = 3e-14
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRG--EGGKEGEDEE-----SVRRYTS 163
D KETDD + D+PG KED+++ + L I + K+ +D++ R Y S
Sbjct: 4 DIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGS 63
Query: 164 ---RIDLPEKLYRTDQIKAEMKNGVLKVTVPK 192
LP ++IKA+ +NGVLK+T+PK
Sbjct: 64 FSRSFYLPNV--DEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 40.2 bits (95), Expect = 5e-05
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 113 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE-GGKEGEDEESVRRYTSRIDLPEKL 171
+ D+ +++D+ G E+++V + N LV+ G+ +E E R +T R LPE
Sbjct: 3 NDDDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEG- 61
Query: 172 YRTDQIKAEM-KNGVLKVTVPK 192
D + + + +GVL + PK
Sbjct: 62 VDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 39.8 bits (94), Expect = 7e-05
Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 113 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEE-------SVRRYTSRI 165
K ++ +++ + G ++D+ + +E N L + G+ E +E + R +
Sbjct: 7 KTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSF 66
Query: 166 DLPEKLYRTDQIK-AEMKNGVLKV 188
+L + + ++K AE++NG+L +
Sbjct: 67 NLADHV----KVKGAELENGLLTI 86
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include
p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1.
Both are co-chaperones for the heat shock protein (Hsp)
90. p23 binds Hsp90 and participates in the folding of
a number of Hsp90 clients, including the progesterone
receptor. p23 also has a passive chaperoning activity
and in addition may participate in prostaglandin
synthesis. Both p23 and Sba1p can regulate telomerase
activity. This group includes domains similar to the
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1). Sgt1 interacts with multiple
protein complexes and has the features of a
co-chaperone. Human (h) Sgt1 interacts with both Hsp70
and Hsp90, and has been shown to bind Hsp90 through its
CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a
subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 36.5 bits (85), Expect = 0.001
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 110 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPE 169
W +T D + ++I + + K+DV+V +L + +GG E Y +L
Sbjct: 1 WY--QTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKE-------YLLEGELFG 51
Query: 170 KLYRTDQIKAEMKNGVLKVTVPKVKEEER 198
+ ++ K +++ +++T+ K + E
Sbjct: 52 PI-DPEESKWTVEDRKIEITLKKKEPGEW 79
>gnl|CDD|227422 COG5091, SGT1, Suppressor of G2 allele of skp1 and related proteins
[General function prediction only].
Length = 368
Score = 33.1 bits (75), Expect = 0.075
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 110 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPE 169
+D ET D + I P +G E V LE NTL I RR D+
Sbjct: 179 YDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSI----------SYQPRRLRLWNDITI 228
Query: 170 KLYRT---DQIKAEMKNGVLKVTVPKVKE 195
LY+ D + + ++V + KV+
Sbjct: 229 SLYKEVYPDIRSIKSFSKRVEVHLRKVEM 257
>gnl|CDD|205122 pfam12875, DUF3826, Protein of unknown function (DUF3826). This is
a putative sugar-binding family.
Length = 187
Score = 32.5 bits (74), Expect = 0.087
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 13/66 (19%)
Query: 150 KEGEDEESVRRYTSRIDLPEKLYR------TDQIKAEMKNGVLKVT-------VPKVKEE 196
K E E+ Y P L + +K M GVL VT +P + EE
Sbjct: 68 KAAEAEKDAALYRLHFAFPADLSLYLTEEQIEAVKDGMTYGVLPVTYKAYQDMIPSLTEE 127
Query: 197 ERADVF 202
E+A ++
Sbjct: 128 EKAQIY 133
>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB7, also
known as cardiovascular small heat shock protein
(cvHsp), and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. HspB7 is a
25-kDa protein, preferentially expressed in heart and
skeletal muscle. It binds the cytoskeleton protein
alpha-filamin (also known as actin-binding protein 280).
The expression of HspB7 is increased during rat muscle
aging. Its expression is also modulated in obesity
implicating this protein in this and related metabolic
disorders. As the human gene encoding HspB7 is mapped to
chromosome 1p36.23-p34.3 it is a positional candidate
for several dystrophies and myopathies.
Length = 81
Score = 29.1 bits (65), Expect = 0.41
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 113 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLY 172
K D ++D+ ED+ V+ N + + E K D + +T + LPE +
Sbjct: 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAE--KLASDGTVMNTFTHKCQLPEDVD 61
Query: 173 RTDQIKAEMKNGVLKVTV 190
T + ++G L +
Sbjct: 62 PTSVSSSLGEDGTLTIKA 79
>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate
5-phosphatases. Inositol polyphosphate 5-phosphatases
(5-phosphatases) are signal-modifying enzymes, which
hydrolyze the 5-phosphate from the inositol ring of
specific 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), such as PI(4,5)P2,
PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4.
These enzymes are Mg2+-dependent, and belong to the
large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds. In addition to this INPP5c domain,
5-phosphatases often contain additional domains and
motifs, such as the SH2 domain, the Sac-1 domain, the
proline-rich domain (PRD), CAAX, RhoGAP
(RhoGTPase-activating protein), and SKICH [SKIP
(skeletal muscle- and kidney-enriched inositol
phosphatase) carboxyl homology] domains, that are
important for protein-protein interactions and/or for
the subcellular localization of these enzymes.
5-phosphatases incorporate into large signaling
complexes, and regulate diverse cellular processes
including postsynaptic vesicular trafficking, insulin
signaling, cell growth and survival, and endocytosis.
Loss or gain of function of 5-phosphatases is implicated
in certain human diseases. This family also contains a
functionally unrelated nitric oxide transport protein,
Cimex lectularius (bedbug) nitrophorin, which catalyzes
a heme-assisted S-nitrosation of a proximal thiolate;
the heme however binds at a site distinct from the
active site of the 5-phosphatases.
Length = 299
Score = 30.8 bits (70), Expect = 0.49
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 151 EGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 187
+ D+E VR+ S+ DL + L DQ+K + + G +
Sbjct: 192 DSTDDE-VRKLISQGDL-DDLLEKDQLKKQKEKGKVF 226
>gnl|CDD|204541 pfam10703, MoaF, Molybdenum cofactor biosynthesis protein F.
MoaF protein is essential for the production of the
monoamine-inducible 30kDa protein in Klebsiella. It is
necessary for reconstituting organoautotrophic growth
in Ralstonia eutropha. It is conserved in
Proteobacteria and some lower eukaryotes. The operon
regulating the Moa genes is responsible for molybdenum
cofactor biosynthesis.
Length = 266
Score = 29.3 bits (66), Expect = 1.2
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 18 RALRCTVAPSATSASRFFNTNAVHQYDDGGDDRDLDIDRRSARSFPRRRDDFFSDVFDPF 77
R L A A F + + Q+ G R+ R +F D P
Sbjct: 32 RTLTLHFAGGAGIFHHFVDDQTL-QWRAAGAGGTAP-----YRATSVRPGIYFVDFLKPE 85
Query: 78 SPTRSLSQVLNF 89
+S+S VL+
Sbjct: 86 DDEQSVSLVLDL 97
>gnl|CDD|110302 pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.
Length = 467
Score = 28.6 bits (64), Expect = 2.5
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 22/99 (22%)
Query: 117 DALNLSIDMPGLGKEDVRVSLEQ----------NTLVIRGEGGKEGEDEESVRRYTSRID 166
D L +SID+PG+ D + ++ NTLV + E V +RI
Sbjct: 94 DPLTISIDLPGMANSDNTIVVQNPTYSNVSGAVNTLV-----ARWHEKYSQVNNVPARIQ 148
Query: 167 LPEKL-YRTDQIKA------EMKNGVLKVTVPKVKEEER 198
E + Y Q+KA + N L + + E E+
Sbjct: 149 YDESMAYSESQLKAKFGVNFKALNNSLGIDFNAISEGEK 187
>gnl|CDD|107372 cd06377, PBP1_iGluR_NMDA_NR3, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the NR3 subunit of NMDA receptor family.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the NR3 subunit of NMDA receptor
family. The ionotropic N-methyl-d-asparate (NMDA)
subtype of glutamate receptor serves critical functions
in neuronal development, functioning, and degeneration
in the mammalian central nervous system. The functional
NMDA receptor is a heterotetramer composed of two NR1
and two NR2 (A, B, C, and D) or of NR3 (A and B)
subunits. The receptor controls a cation channel that is
highly permeable to monovalent ions and calcium and
exhibits voltage-dependent inhibition by magnesium. Dual
agonists, glutamate and glycine, are required for
efficient activation of the NMDA receptor. Among NMDA
receptor subtypes, the NR2B subunit containing receptors
appear particularly important for pain perception; thus
NR2B-selective antagonists may be useful in the
treatment of chronic pain.
Length = 382
Score = 28.2 bits (63), Expect = 3.4
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 28/88 (31%)
Query: 75 DPFSPTRSLSQV---------------------LNFMDQMTENPFFSGTRGGLRRGWDAK 113
DP S RS+ Q L+F+ E P S R RG
Sbjct: 65 DPASLLRSVCQTVVVQGVSALLAFPQTRPELVQLDFVSAALEIPVVSIVRREFPRG---- 120
Query: 114 ETDDALNLSIDM--PGLGKEDVRVSLEQ 139
+ + +L + P DV +S+ Q
Sbjct: 121 -SQNPFHLQMSWASPLSTLLDVLLSVLQ 147
>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit
(UDP-forming). Cellulose synthase catalyzes the
beta-1,4 polymerization of glucose residues in the
formation of cellulose. In bacteria, the substrate is
UDP-glucose. The synthase consists of two subunits (or
domains in the frequent cases where it is encoded as a
single polypeptide), the catalytic domain modelled here
and the regulatory domain (pfam03170). The regulatory
domain binds the allosteric activator cyclic di-GMP. The
protein is membrane-associated and probably assembles
into multimers such that the individual cellulose
strands can self-assemble into multi-strand fibrils.
Length = 713
Score = 27.7 bits (62), Expect = 4.5
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 40 VHQYDDGGDDRDLDIDRRSARSFPRRRDDF 69
V DDGG D+ + +RR++
Sbjct: 166 VWILDDGGTDQKRNDPDPEQAEAAQRREEL 195
>gnl|CDD|165425 PHA03154, PHA03154, hypothetical protein; Provisional.
Length = 304
Score = 27.7 bits (61), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 159 RRYTSRIDLPEKLYRTD--QIKAEMKNGVLKVTVPKVKEE----ERAD 200
+RY+ DL + + D IKAE KN +L VPK + E+ D
Sbjct: 8 QRYSLISDLHKNFHYVDINVIKAEFKNVILDTVVPKFSQPATHLEKGD 55
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB9 and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB9 is
expressed exclusively in the normal testis and in
various tumor samples and is a cancer/testis antigen.
hHspB9 interacts with TCTEL1 (T-complex testis
expressed protein -1), a subunit of dynein. hHspB9 and
TCTEL1 are co-expressed in similar cells within the
testis and in tumor cells. Included in this group is
Xenopus Hsp30, a developmentally-regulated
heat-inducible molecular chaperone.
Length = 87
Score = 26.2 bits (58), Expect = 5.0
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSR-----I 165
+ K+ + +L +D+ G ED+ V ++ LV+ G+ K+ EDE+ Y +
Sbjct: 1 EGKDGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREA 60
Query: 166 DLPEKLYRTDQIKAEMKNGVLKVTVP 191
LPE + + +G L + P
Sbjct: 61 QLPEHVDPEAVTCSLSPSGHLHIRAP 86
>gnl|CDD|216885 pfam02120, Flg_hook, Flagellar hook-length control protein FliK.
This is the C terminal domain of FliK. FliK controls the
length of the flagellar hook by directly measuring the
hook length as a molecular ruler. This family also
includes YscP of the Yersinia type III secretion system,
and equivalent proteins in other pathogenic bacterial
type III secretion systems.
Length = 79
Score = 25.7 bits (57), Expect = 5.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 119 LNLSIDMPGLGKEDVRVSLEQNTLVIR 145
L +D P LG +VR+SL+ L ++
Sbjct: 14 AELRLDPPELGPVEVRLSLDGGQLSVQ 40
>gnl|CDD|232891 TIGR00238, TIGR00238, KamA family protein. This model represents
essentially the whole of E. coli YjeK and of some of its
apparent orthologs. YodO in Bacillus subtilis, a family
member which is longer protein by an additional 100
residues, is characterized as a lysine 2,3-aminomutase
with iron, sulphide and pyridoxal 5'-phosphate groups.
The homolog MJ0634 from M. jannaschii is preceded by
nearly 200 C-terminal residues. This family shows
similarity to molybdenum cofactor biosynthesis protein
MoaA and related proteins. Note that the E. coli homolog
was expressed in E. coli and purified and found not to
display display lysine 2,3-aminomutase activity. Active
site residues are found in 100 residue extension in B.
subtilis. Name changed to KamA family protein [Energy
metabolism, Electron transport].
Length = 331
Score = 27.1 bits (60), Expect = 7.4
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 48 DDRDLDIDRRSARS-FPRRRDDFFSDVFDPFSPTRSL-SQVLNFMDQMTENPFFS 100
D DL+ R+A+ P R ++ D+ D +P + QV+ ++ E FS
Sbjct: 38 SDEDLEEIERAAKKLIPLRVTPYYIDLMDKGNPDDPVRRQVIPSSEEFVEAMGFS 92
>gnl|CDD|236620 PRK09739, PRK09739, hypothetical protein; Provisional.
Length = 199
Score = 26.6 bits (59), Expect = 7.5
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 107 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 147
+RGW+ +D LN+ + LG ED V+ NTLV GE
Sbjct: 138 KRGWEKNMSD-YLNVGM-ASYLGIEDSDVTFLYNTLVFDGE 176
>gnl|CDD|218504 pfam05215, Spiralin, Spiralin. This family consists of Spiralin
proteins found in spiroplasma bacteria. Spiroplasmas are
helically shaped pathogenic bacteria related to the
mycoplasmas. The surface of spiroplasma bacteria is
crowded with the membrane-anchored lipoprotein spiralin
whose structure and function are unknown although its
cellular function is thought to be a structural and
mechanical one rather than a catalytic one.
Length = 239
Score = 26.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 182 KNGVLKVTVPKVKEEERADVFQVKV 206
K G +KVT+PK E ++ D+ V V
Sbjct: 121 KTGYIKVTLPKNSEVKKVDISDVTV 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,588,043
Number of extensions: 1007129
Number of successful extensions: 936
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 41
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)