RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028542
(207 letters)
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 102 bits (255), Expect = 7e-28
Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 11/153 (7%)
Query: 62 FPRRRDDFFSDVFDPFSPTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNL 121
F R +FF+ + +S + + + G E D + +
Sbjct: 11 FERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKV 70
Query: 122 SIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEES------VRRYTS---RIDLPEKLY 172
+PG+ KED+ ++ +TL IR + E + I LP +
Sbjct: 71 IAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV- 129
Query: 173 RTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 205
+ + A+ +NGVL V +PK E ++
Sbjct: 130 KEENASAKFENGVLSVILPK-AESSIKKGINIE 161
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 96.2 bits (240), Expect = 1e-25
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 23/153 (15%)
Query: 69 FFSDVFDPFSPTRSLSQVLNFMDQMTENPFFSGTRGGLRRG------WDAKETDDALNLS 122
S+VFDPF+ + + + + GG D KET +A
Sbjct: 5 RRSNVFDPFA------DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFK 58
Query: 123 IDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGEDEESV-----RRYTS---RIDLPEKLYR 173
D+PG+ KE+V+V +E N LV+ GE KE ED+ R R L E +
Sbjct: 59 ADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDA-K 117
Query: 174 TDQIKAEMKNGVLKVTVPKVKEEERADVFQVKV 206
+++KA ++NGVL VTVPK E ++ +V +++
Sbjct: 118 VEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 92.9 bits (232), Expect = 5e-25
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESV-----RRYTS-- 163
D KE + L D+PG+ + V +++ L IRGE E E RRY S
Sbjct: 8 DIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFH 67
Query: 164 -RIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 195
R LP+ D I A +NGVL++ +PK
Sbjct: 68 RRFALPDSA-DADGITAAGRNGVLEIRIPKRPA 99
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 88.8 bits (221), Expect = 4e-23
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 87 LNFMDQMTENPFFSGTRGGLRRGW---DAKETDDALNLSIDMPGLGKEDVRVSLE-QNTL 142
+ ++ + + +RG + D E L + D+ G KE ++ + QN L
Sbjct: 1 MYYLGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNEL 60
Query: 143 VIRGEGGKEGEDEESVRRYTS----RIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE 196
+I E + + + I LP + + +I + +NGVL + +P
Sbjct: 61 IIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTS 118
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 68.4 bits (167), Expect = 8e-15
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 22/163 (13%)
Query: 62 FPRRRDDFFSDVFDPFSPTRSLSQVL-NFMDQMTENPFFSGTRGGLRRGW---------- 110
P R FF SP+R Q + + P + R
Sbjct: 7 HPWIRRPFF----PFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFD 62
Query: 111 ----DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE-GGKEGEDEESVRRYTSRI 165
+ + D ++++D+ E+++V + + + + G+ ++ E R + +
Sbjct: 63 TGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKY 122
Query: 166 DLPEKLYRTDQIKAEM-KNGVLKVTVPKVKEEERADVFQVKVD 207
+P I + + +GVL V P+ + + +
Sbjct: 123 RIPAD-VDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITRE 164
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 62.9 bits (153), Expect = 2e-13
Identities = 10/89 (11%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSR-IDLPE 169
++ +D+ E++ V + + + + + ++ + R R LP
Sbjct: 5 QVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPP 64
Query: 170 KLYRTDQIKAEM-KNGVLKVTVPKVKEEE 197
+ + + GVL + +
Sbjct: 65 G-VDPAAVTSALSPEGVLSIQATPASAQA 92
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 61.7 bits (150), Expect = 3e-13
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 112 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE-GGKEGEDEESVRRYTSRIDLPEK 170
D ++++D+ E+++V + + + + G+ ++ E R + + +P
Sbjct: 1 GAMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD 60
Query: 171 LYRTDQIKAEM-KNGVLKVTVPKVKEEE 197
I + M +GVL V P+ +
Sbjct: 61 -VDPLTITSSMSSDGVLTVNGPRKQVSG 87
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 60.1 bits (146), Expect = 1e-12
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 112 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE-GGKEGEDEESVRRYTSRIDLPEK 170
T D +S+D+ +++ V + + I G+ ++ E R +T + LP
Sbjct: 2 GSHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPG 61
Query: 171 LYRTDQIKAEM-KNGVLKVTVPKVK 194
Q+ + + G L V P K
Sbjct: 62 -VDPTQVSSSLSPEGTLTVEAPMPK 85
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 59.9 bits (145), Expect = 3e-12
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 111 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSR-IDLPE 169
+ + D + +D+ ED+ V ++++ + I G+ + +D + R R LP
Sbjct: 6 EVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPS 65
Query: 170 KLYRTDQIKAEM-KNGVLKVTVPKVKEEERA 199
+ + +G+L + PK+ A
Sbjct: 66 N-VDQSALSCSLSADGMLTFSGPKIPSGVDA 95
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 56.4 bits (135), Expect = 7e-10
Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 13/154 (8%)
Query: 48 DDRDLDIDRRSARSFPRRRDDFFSDVFDPFSP-TRSLSQVLNFMDQMTENPFFSGTRGGL 106
D + + FS +PF+ + V+ M + F
Sbjct: 36 FDWAERSRQSLHDDIVNMHRNLFS--LEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQ 93
Query: 107 RRGWD--------AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESV 158
D K+ + ++ E++ + ++N LV+R + D
Sbjct: 94 PGELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMS 153
Query: 159 RRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVTVP 191
I LP + I+A + + VL + P
Sbjct: 154 ESVGRSIPLPPS-VDRNHIQATITTDDVLVIEAP 186
Score = 49.8 bits (118), Expect = 1e-07
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 126 PGLGKEDVRVSLEQNTLVIRGEGGKEGEDEE----SVRRYTSRIDLPEKLYRTDQIKAEM 181
P +DV+V + N + + G GKE + E R + PE + +AE+
Sbjct: 243 PHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEV-VDASKTQAEI 301
Query: 182 KNGVLKVTVPKVK 194
+G++ V P K
Sbjct: 302 VDGLMVVEAPLFK 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 3e-05
Identities = 36/247 (14%), Positives = 70/247 (28%), Gaps = 71/247 (28%)
Query: 7 LKRLASSNVIPRALRCTVAPSATSASRFF-------NTNAVHQYDDGGDDRDLD------ 53
K + S I + + A S + V ++ + +
Sbjct: 42 PKSILSKEEIDHIIM---SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 54 ----IDR-RSARSFPRRRDDFFSD--VFDPFSPTRSLSQVLNFMDQMTENPFFSGTRGGL 106
R + +RD ++D VF ++ +R + + L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--------LQPYLK----------L 140
Query: 107 RRGWDAKETDDALNLSID-MPGLGKEDVRVSLEQNTLVIRGEG--------GKEGEDEES 157
R+ E A N+ ID + G GK V + + + V E
Sbjct: 141 RQA--LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 158 VRR-----------YTSRIDLPEKL-YRTDQIKAEMKNGVLKVTVPK-------VKEEER 198
+ +TSR D + R I+AE++ + V+ +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 199 ADVFQVK 205
+ F +
Sbjct: 259 WNAFNLS 265
Score = 34.4 bits (78), Expect = 0.023
Identities = 34/236 (14%), Positives = 54/236 (22%), Gaps = 89/236 (37%)
Query: 6 ALKRLASSNVIPRAL-----------------RCTVAPSATSASRFFNTNAVHQYDDGGD 48
L+RL S L C + T+
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTT------------------ 272
Query: 49 DRDLDI-DRRSARSFPRRRDDFFSDVFDPFSPTRSLSQVLNFMDQMTE---------NPF 98
R + D SA +P S +L ++D + NP
Sbjct: 273 -RFKQVTDFLSA---ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 99 FSG-----TRGGLRRGWD--AKETDDALNLSIDM------PGLGK----------EDVRV 135
R GL WD D L I+ P + +
Sbjct: 329 RLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 136 SLEQNTLVIRGEGGKEGEDEESV-----------RRYTSRIDLPEKLYRTDQIKAE 180
L + + + V + S I +P +Y ++K E
Sbjct: 388 PTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLE 440
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.001
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Query: 154 DEESVRRYTSRIDLPEKLYRTDQ-----IKAEMK 182
+++++++ + + KLY D IKA M+
Sbjct: 18 EKQALKKLQASL----KLYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 1.1
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 10/31 (32%)
Query: 6 ALKRLASSNVIPRALRCTV---APS-ATSAS 32
ALK+L +S L+ AP+ A A+
Sbjct: 21 ALKKLQAS------LKLYADDSAPALAIKAT 45
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 35.3 bits (81), Expect = 0.009
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 112 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKL 171
+ + +PG K+ V+++ + + I LP L
Sbjct: 300 ITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVE------------AGDQRRNIFLPPAL 347
Query: 172 YRTDQIKAEMKNGVLKVT-VPKVKEE 196
A+ +N L ++ +
Sbjct: 348 SGRPITGAKFQNNYLIISFLEHHHHH 373
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.027
Identities = 33/148 (22%), Positives = 46/148 (31%), Gaps = 53/148 (35%)
Query: 2 ASSLALKRLASSNVI--PRALRCTVAPSATSASRFFNTNAVHQYDDGGDDRDLD--IDRR 57
AS L K L +NV + ++ V ++T DG D R L I R
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPV----------YDTF------DGSDLRVLSGSISER 478
Query: 58 SARSFPRRRDDFFSDVFDPFSPTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDD 117
R + + F T +L+F P G GL T
Sbjct: 479 IVDCIIRLPVKW--ETTTQFKATH----ILDF------GP---GGASGL-----GVLTHR 518
Query: 118 ALNLSIDMPGLGKEDVRV----SLEQNT 141
+ G G VRV +L+ N
Sbjct: 519 NKD------GTG---VRVIVAGTLDINP 537
Score = 28.1 bits (62), Expect = 2.4
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 23/99 (23%)
Query: 64 RRRDDFF------SDVF----DPFSPTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAK 113
+ ++ F ++ F +P +P + + L ++ + E L
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 114 ETD-----D--ALNLSIDMPGLGKEDVRVSLEQNTLVIR 145
E D AL + ++ +L + +I+
Sbjct: 92 ENCYLEGNDIHALAAKLL------QENDTTLVKTKELIK 124
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 28.0 bits (62), Expect = 0.94
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 106 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKE 151
++ W +T+ + +++ + + K DV V + L +
Sbjct: 10 IKYDWY--QTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSG 53
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 26.7 bits (59), Expect = 2.0
Identities = 5/39 (12%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 106 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI 144
R + + + + +++ G+ K++V + + L +
Sbjct: 3 YRHEYY--QKPEEVVVTVFAKGIPKQNVNIDFGEQILSV 39
>2w3y_A Virulence factor, EVF; drosophila pathogen, erwinia carotovora,
S-palmitoylated protein, lipid-binding protein; HET:
PLM; 2.00A {Pectobacterium carotovorum subsp}
Length = 283
Score = 27.5 bits (60), Expect = 3.0
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 29 TSASRFFNTNAVHQYDDGGDDRDLD--IDRRSARSFPRRRDDFFSDVFDPFSPTRS 82
+ F + + + +D +D+ ++ D +F D+F+ P ++
Sbjct: 222 DTVGGTFRIEEY--FSNETFKKKVDNFLDKYEGKAI-DDADSYFDDIFNGVKPNKN 274
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Length = 124
Score = 25.7 bits (56), Expect = 6.6
Identities = 5/43 (11%), Positives = 18/43 (41%)
Query: 155 EESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEE 197
+ R+ +P+ + + Q+ + + ++V + + E
Sbjct: 25 SQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGER 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,155,543
Number of extensions: 187203
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 27
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)