BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028543
         (207 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6CIJ3|KAR5_KLULA Nuclear fusion protein KAR5 OS=Kluyveromyces lactis (strain ATCC
           8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
           WM37) GN=KAR5 PE=3 SV=1
          Length = 487

 Score = 35.8 bits (81), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 11/80 (13%)

Query: 92  HPNAWIEFEMGMISEMELARKFFTDGRPFDL---------EGLKICMKKGYAYLDGVEEL 142
           H +  IE E+  +   EL+R++  +  P            E L+ICM+KG+ ++D    +
Sbjct: 18  HISNVIEKELDQLEITELSREYINNKFPITQSSCVKNALGEFLEICMRKGFEFVDADLRV 77

Query: 143 LHELKQS--NYEMHAFTNYP 160
           +  ++ S   +E    TNYP
Sbjct: 78  ITAVRLSVCEFESSGLTNYP 97


>sp|Q9PN90|RADA_CAMJE DNA repair protein RadA homolog OS=Campylobacter jejuni subsp.
           jejuni serotype O:2 (strain NCTC 11168) GN=radA PE=3
           SV=1
          Length = 446

 Score = 33.9 bits (76), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 11/82 (13%)

Query: 99  FEM---GMISEMELARKFFTDGRPFDLEGLKICMKKGYAYLDGVEELLHELKQSNYEMHA 155
           FEM   G+IS  +LA +FFT G+      L + M+   A +  V+ L+ E   S+Y   +
Sbjct: 265 FEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCE---SSYPKRS 321

Query: 156 FTNYP-----IWYEIIEDKLKI 172
            T Y      +   ++E KL+I
Sbjct: 322 ATGYEKNRLDMLLALLERKLEI 343


>sp|Q9AUE0|CALS1_ARATH Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2
          Length = 1950

 Score = 32.7 bits (73), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/73 (21%), Positives = 41/73 (56%), Gaps = 10/73 (13%)

Query: 46   LSGKENEKRKLPILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMIS 105
            L  +E +K ++ I+L ++++ + RD    +VP+        L+E  H  ++++++  +++
Sbjct: 956  LENREEDKDQIVIVLLNMLELVTRDIMEEEVPS--------LLETAHNGSYVKYD--VMT 1005

Query: 106  EMELARKFFTDGR 118
             +   RK+F+  R
Sbjct: 1006 PLHQQRKYFSQLR 1018


>sp|Q8Z6F3|SPPA_SALTI Protease 4 OS=Salmonella typhi GN=sppA PE=3 SV=1
          Length = 618

 Score = 32.0 bits (71), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 111 RKFFTDGRPFDLEGLKICMKKGYAYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKL 170
           R+F   G+P    G      +G  YL      +    Q   ++H F    ++Y+ + DKL
Sbjct: 139 REFRDSGKPVFAVGENYS--QGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKL 196

Query: 171 KISTYL 176
           K+ST++
Sbjct: 197 KVSTHV 202


>sp|P75569|PTG3C_MYCPN PTS system glucose-specific EIICBA component OS=Mycoplasma
           pneumoniae (strain ATCC 29342 / M129) GN=ptsG PE=3 SV=1
          Length = 940

 Score = 31.2 bits (69), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 12  IPLKPSKT---KPTRIMALNSSNKNKN------MNPPTVAMASLSGKENEKRKLPILLFD 62
           +PL  S T    PT + A   SN N N      +N   VA+ SL+  +  + K P +LF 
Sbjct: 436 LPLNASSTIVNNPTALAAATQSNNNTNNIKLYPVNSFRVAVESLNPAQYSQGKFPFMLFG 495

Query: 63  I 63
           I
Sbjct: 496 I 496


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,225,942
Number of Sequences: 539616
Number of extensions: 3320625
Number of successful extensions: 7276
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7276
Number of HSP's gapped (non-prelim): 7
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)