Query 028543
Match_columns 207
No_of_seqs 167 out of 1175
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 13:09:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09456 ?-D-glucose-1-phospha 99.9 1.6E-21 3.5E-26 160.0 15.2 146 57-202 1-154 (199)
2 PRK09449 dUMP phosphatase; Pro 99.9 2.5E-21 5.5E-26 160.7 14.6 146 54-202 1-163 (224)
3 TIGR02254 YjjG/YfnB HAD superf 99.8 1.8E-19 3.9E-24 148.7 15.5 146 56-202 1-165 (224)
4 TIGR01428 HAD_type_II 2-haloal 99.8 9E-20 2E-24 148.9 13.4 147 56-202 1-161 (198)
5 TIGR01422 phosphonatase phosph 99.8 1.6E-19 3.4E-24 153.1 14.6 147 55-202 1-169 (253)
6 PRK14988 GMP/IMP nucleotidase; 99.8 1.1E-19 2.3E-24 152.5 13.2 144 54-202 8-162 (224)
7 TIGR02247 HAD-1A3-hyp Epoxide 99.8 1.3E-19 2.7E-24 149.4 13.3 147 56-202 2-165 (211)
8 PLN02770 haloacid dehalogenase 99.8 1.2E-19 2.6E-24 154.2 12.9 72 131-202 105-177 (248)
9 TIGR02252 DREG-2 REG-2-like, H 99.8 4E-19 8.7E-24 145.4 13.3 145 57-202 1-173 (203)
10 COG0637 Predicted phosphatase/ 99.8 3.5E-19 7.7E-24 149.3 11.2 140 55-202 1-155 (221)
11 PLN03243 haloacid dehalogenase 99.8 6.3E-19 1.4E-23 151.3 12.7 139 55-203 23-179 (260)
12 TIGR02009 PGMB-YQAB-SF beta-ph 99.8 1E-18 2.2E-23 140.3 12.4 136 56-201 1-154 (185)
13 TIGR03351 PhnX-like phosphonat 99.8 1.3E-18 2.9E-23 144.0 13.3 143 56-203 1-159 (220)
14 PRK11587 putative phosphatase; 99.8 1.9E-18 4.1E-23 143.7 13.8 137 54-202 1-151 (218)
15 PRK13478 phosphonoacetaldehyde 99.8 2.2E-18 4.8E-23 147.6 14.4 150 54-204 2-173 (267)
16 TIGR02253 CTE7 HAD superfamily 99.8 2.2E-18 4.7E-23 142.5 13.7 71 132-202 92-163 (221)
17 TIGR01990 bPGM beta-phosphoglu 99.8 1.8E-18 4E-23 138.9 12.3 135 58-202 1-154 (185)
18 COG1011 Predicted hydrolase (H 99.8 3.2E-18 7E-23 141.6 12.7 150 54-204 2-169 (229)
19 PRK13288 pyrophosphatase PpaX; 99.8 5.7E-18 1.2E-22 140.0 14.1 70 133-202 81-151 (214)
20 PRK10826 2-deoxyglucose-6-phos 99.8 6.5E-18 1.4E-22 140.5 13.9 71 132-202 90-161 (222)
21 PRK10725 fructose-1-P/6-phosph 99.8 5.2E-18 1.1E-22 136.9 12.8 137 55-202 4-155 (188)
22 PRK10563 6-phosphogluconate ph 99.8 5.2E-18 1.1E-22 140.7 12.8 136 54-202 2-155 (221)
23 TIGR01449 PGP_bact 2-phosphogl 99.8 4.6E-18 1E-22 139.6 12.2 70 133-202 84-154 (213)
24 PLN02575 haloacid dehalogenase 99.8 7.5E-18 1.6E-22 151.4 12.3 140 55-204 130-287 (381)
25 PLN02940 riboflavin kinase 99.8 1.1E-17 2.4E-22 150.8 13.2 146 51-202 6-163 (382)
26 PRK13226 phosphoglycolate phos 99.7 1.3E-17 2.9E-22 139.9 11.8 71 132-202 93-164 (229)
27 KOG3085 Predicted hydrolase (H 99.7 1.6E-17 3.5E-22 140.4 10.4 149 54-202 5-181 (237)
28 COG0546 Gph Predicted phosphat 99.7 9.6E-17 2.1E-21 134.1 13.5 70 133-202 88-158 (220)
29 PRK13222 phosphoglycolate phos 99.7 1.1E-16 2.4E-21 132.3 13.6 70 133-202 92-162 (226)
30 TIGR01548 HAD-SF-IA-hyp1 haloa 99.7 1.1E-16 2.3E-21 131.1 12.5 66 136-202 108-174 (197)
31 PF13419 HAD_2: Haloacid dehal 99.7 1.3E-16 2.9E-21 124.9 11.1 135 59-202 1-146 (176)
32 TIGR01509 HAD-SF-IA-v3 haloaci 99.7 9.9E-17 2.1E-21 128.1 9.1 70 133-202 84-153 (183)
33 PRK10748 flavin mononucleotide 99.7 2E-16 4.3E-21 133.6 11.2 66 132-202 111-176 (238)
34 TIGR01454 AHBA_synth_RP 3-amin 99.7 1.4E-16 3.1E-21 130.8 10.0 72 132-203 73-145 (205)
35 TIGR01493 HAD-SF-IA-v2 Haloaci 99.7 1.8E-16 4E-21 126.6 9.7 64 132-202 88-152 (175)
36 PRK13223 phosphoglycolate phos 99.7 5.9E-16 1.3E-20 133.5 12.9 70 133-202 100-170 (272)
37 TIGR01993 Pyr-5-nucltdase pyri 99.7 9.2E-16 2E-20 123.9 13.3 67 133-202 83-154 (184)
38 PRK06698 bifunctional 5'-methy 99.7 5.6E-16 1.2E-20 142.5 12.4 144 50-201 235-397 (459)
39 PLN02779 haloacid dehalogenase 99.7 1.8E-15 4E-20 131.4 13.9 70 133-202 143-215 (286)
40 TIGR01549 HAD-SF-IA-v1 haloaci 99.6 1.8E-15 4E-20 118.5 10.2 68 133-202 63-131 (154)
41 PLN02919 haloacid dehalogenase 99.6 2.5E-15 5.4E-20 150.3 12.7 140 54-202 73-231 (1057)
42 TIGR00338 serB phosphoserine p 99.6 5.4E-14 1.2E-18 116.3 15.5 141 54-201 12-163 (219)
43 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.6 8.4E-14 1.8E-18 113.0 13.4 130 56-192 4-139 (201)
44 PHA02597 30.2 hypothetical pro 99.5 4.5E-14 9.8E-19 115.2 10.8 130 56-201 2-142 (197)
45 PRK13225 phosphoglycolate phos 99.5 2.1E-13 4.6E-18 117.9 14.3 68 132-202 140-208 (273)
46 KOG2914 Predicted haloacid-hal 99.5 9.8E-14 2.1E-18 116.6 10.9 140 54-202 8-164 (222)
47 PLN02954 phosphoserine phospha 99.5 5.6E-13 1.2E-17 110.6 14.8 140 54-200 10-165 (224)
48 PRK09552 mtnX 2-hydroxy-3-keto 99.5 6.7E-13 1.5E-17 110.5 11.4 130 57-194 4-138 (219)
49 PLN02811 hydrolase 99.4 5E-13 1.1E-17 111.3 9.9 71 132-202 76-150 (220)
50 TIGR01489 DKMTPPase-SF 2,3-dik 99.4 4.4E-12 9.6E-17 101.7 13.2 118 58-183 3-122 (188)
51 TIGR01672 AphA HAD superfamily 99.4 8.8E-12 1.9E-16 105.9 11.7 65 134-198 114-183 (237)
52 TIGR03333 salvage_mtnX 2-hydro 99.3 1.3E-11 2.8E-16 102.5 10.9 129 59-195 2-135 (214)
53 TIGR01656 Histidinol-ppas hist 99.3 6E-12 1.3E-16 98.9 7.0 69 134-202 27-114 (147)
54 PRK11133 serB phosphoserine ph 99.3 6.3E-11 1.4E-15 104.9 14.1 141 54-201 108-259 (322)
55 TIGR01685 MDP-1 magnesium-depe 99.3 2.8E-12 6.2E-17 104.2 4.8 67 133-199 44-121 (174)
56 PRK08942 D,D-heptose 1,7-bisph 99.3 3E-11 6.4E-16 97.8 9.4 67 134-202 29-116 (181)
57 TIGR01681 HAD-SF-IIIC HAD-supe 99.3 1.7E-11 3.6E-16 94.5 7.3 66 134-203 29-103 (128)
58 TIGR01664 DNA-3'-Pase DNA 3'-p 99.3 1.7E-11 3.7E-16 98.7 7.5 67 134-202 42-121 (166)
59 PRK13582 thrH phosphoserine ph 99.2 2.2E-10 4.8E-15 93.6 13.6 113 56-182 1-116 (205)
60 TIGR01691 enolase-ppase 2,3-di 99.2 2E-10 4.4E-15 96.6 12.2 67 134-202 95-165 (220)
61 TIGR01662 HAD-SF-IIIA HAD-supe 99.2 8.8E-11 1.9E-15 90.0 9.2 65 134-202 25-98 (132)
62 TIGR01488 HAD-SF-IB Haloacid D 99.2 8E-10 1.7E-14 87.9 13.3 118 59-182 2-122 (177)
63 TIGR02137 HSK-PSP phosphoserin 99.1 2.9E-09 6.2E-14 88.4 13.2 129 57-200 2-141 (203)
64 cd01427 HAD_like Haloacid deha 99.1 4.9E-10 1.1E-14 83.5 7.7 70 133-202 23-109 (139)
65 PRK11590 hypothetical protein; 99.1 1.1E-09 2.3E-14 90.9 9.7 50 133-183 94-145 (211)
66 PRK11009 aphA acid phosphatase 99.0 1.4E-09 3E-14 92.5 10.2 114 56-199 63-184 (237)
67 KOG3109 Haloacid dehalogenase- 99.0 6.9E-09 1.5E-13 86.5 11.9 68 133-202 99-173 (244)
68 COG0560 SerB Phosphoserine pho 99.0 1.1E-08 2.3E-13 85.6 12.7 124 55-184 4-128 (212)
69 PRK06769 hypothetical protein; 98.9 1.4E-09 3.1E-14 87.8 5.7 69 134-202 28-106 (173)
70 TIGR01261 hisB_Nterm histidino 98.9 3.6E-09 7.9E-14 84.8 7.5 67 134-202 29-116 (161)
71 TIGR00213 GmhB_yaeD D,D-heptos 98.9 3.5E-09 7.5E-14 85.5 7.4 67 134-202 26-119 (176)
72 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.9 2.6E-08 5.6E-13 81.2 12.4 45 134-178 87-132 (202)
73 PRK08238 hypothetical protein; 98.9 4.2E-08 9.1E-13 91.2 13.7 58 134-194 72-130 (479)
74 PF06888 Put_Phosphatase: Puta 98.9 3.2E-08 6.9E-13 84.0 11.7 114 58-182 2-122 (234)
75 TIGR01684 viral_ppase viral ph 98.7 3.3E-08 7.2E-13 86.2 6.1 70 136-205 148-218 (301)
76 TIGR01545 YfhB_g-proteo haloac 98.7 2.6E-07 5.6E-12 77.0 10.9 49 134-183 94-144 (210)
77 TIGR01686 FkbH FkbH-like domai 98.6 9.8E-08 2.1E-12 84.2 7.6 65 135-204 32-101 (320)
78 smart00577 CPDc catalytic doma 98.5 1.3E-07 2.7E-12 74.5 4.8 65 134-202 45-111 (148)
79 PHA02530 pseT polynucleotide k 98.4 2.4E-07 5.1E-12 80.3 4.9 69 134-202 187-264 (300)
80 TIGR01533 lipo_e_P4 5'-nucleot 98.4 2.6E-06 5.6E-11 73.7 10.7 56 134-190 118-178 (266)
81 PRK05446 imidazole glycerol-ph 98.3 1.8E-06 3.9E-11 77.5 7.6 66 134-201 30-116 (354)
82 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.3 8E-07 1.7E-11 76.1 4.8 67 135-201 121-191 (257)
83 KOG3120 Predicted haloacid deh 98.3 5E-06 1.1E-10 69.7 9.3 117 57-182 14-134 (256)
84 TIGR01452 PGP_euk phosphoglyco 98.3 1.2E-06 2.7E-11 75.6 5.7 67 135-202 144-215 (279)
85 PF12689 Acid_PPase: Acid Phos 98.3 3.7E-07 8E-12 73.9 2.3 49 133-181 44-104 (169)
86 KOG1615 Phosphoserine phosphat 98.2 2E-05 4.3E-10 65.0 10.9 114 54-174 14-129 (227)
87 COG4996 Predicted phosphatase 98.2 2.2E-06 4.8E-11 66.5 4.6 57 134-197 41-98 (164)
88 TIGR01668 YqeG_hyp_ppase HAD s 98.1 6.2E-06 1.3E-10 66.3 6.8 60 134-202 43-104 (170)
89 TIGR01663 PNK-3'Pase polynucle 98.1 5.4E-06 1.2E-10 77.9 7.2 65 135-201 198-275 (526)
90 TIGR01544 HAD-SF-IE haloacid d 98.0 4.4E-05 9.5E-10 66.4 10.2 76 117-192 103-186 (277)
91 TIGR02244 HAD-IG-Ncltidse HAD 98.0 1.4E-05 3.1E-10 71.4 6.5 54 133-190 183-245 (343)
92 PHA03398 viral phosphatase sup 97.9 1.3E-05 2.9E-10 70.1 5.2 54 136-189 150-204 (303)
93 PLN02645 phosphoglycolate phos 97.9 2.6E-05 5.6E-10 68.6 6.9 50 135-184 45-98 (311)
94 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.9 1.8E-05 4E-10 66.8 4.8 53 134-186 24-80 (242)
95 TIGR01456 CECR5 HAD-superfamil 97.8 3.7E-05 8E-10 67.9 6.2 118 58-196 2-125 (321)
96 PF12710 HAD: haloacid dehalog 97.8 1.2E-05 2.6E-10 64.3 2.8 38 137-174 92-130 (192)
97 COG0647 NagD Predicted sugar p 97.8 4.1E-05 8.8E-10 66.4 6.0 53 134-186 24-81 (269)
98 TIGR01675 plant-AP plant acid 97.7 0.00019 4.1E-09 60.9 8.8 55 134-189 120-178 (229)
99 PF06941 NT5C: 5' nucleotidase 97.7 0.00013 2.8E-09 59.5 7.1 28 133-160 72-99 (191)
100 TIGR01457 HAD-SF-IIA-hyp2 HAD- 97.6 0.00019 4.1E-09 61.2 7.2 49 136-184 19-71 (249)
101 TIGR02726 phenyl_P_delta pheny 97.6 0.00011 2.5E-09 59.3 5.1 51 143-202 43-94 (169)
102 PF00702 Hydrolase: haloacid d 97.5 0.00024 5.2E-09 57.5 6.5 64 134-202 127-191 (215)
103 TIGR01670 YrbI-phosphatas 3-de 97.5 0.00021 4.6E-09 56.5 5.0 51 142-201 36-87 (154)
104 PF03767 Acid_phosphat_B: HAD 97.4 0.00013 2.8E-09 61.7 3.2 51 134-185 115-169 (229)
105 PTZ00445 p36-lilke protein; Pr 97.4 0.00051 1.1E-08 57.6 6.6 66 135-200 76-172 (219)
106 TIGR01680 Veg_Stor_Prot vegeta 97.4 0.0017 3.7E-08 56.4 10.0 50 134-184 145-198 (275)
107 PRK00192 mannosyl-3-phosphogly 97.3 0.0007 1.5E-08 58.1 7.1 41 137-177 24-65 (273)
108 PRK10513 sugar phosphate phosp 97.3 0.001 2.2E-08 56.6 8.0 16 54-69 1-16 (270)
109 COG4359 Uncharacterized conser 97.3 0.0063 1.4E-07 50.1 12.0 97 57-161 4-100 (220)
110 PRK01158 phosphoglycolate phos 97.2 0.00098 2.1E-08 55.1 6.8 17 54-70 1-17 (230)
111 PRK10444 UMP phosphatase; Prov 97.2 0.00022 4.7E-09 61.0 2.6 26 177-202 162-187 (248)
112 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.2 0.00011 2.4E-09 62.1 0.6 66 136-202 140-208 (242)
113 PF13344 Hydrolase_6: Haloacid 97.2 0.00066 1.4E-08 50.2 4.7 52 134-185 14-69 (101)
114 PRK10530 pyridoxal phosphate ( 97.1 0.0021 4.6E-08 54.4 7.2 17 54-70 1-17 (272)
115 TIGR01487 SPP-like sucrose-pho 97.0 0.0026 5.6E-08 52.4 6.8 14 56-69 1-14 (215)
116 TIGR02251 HIF-SF_euk Dullard-l 96.9 0.00084 1.8E-08 53.7 3.5 64 134-201 42-107 (162)
117 TIGR02250 FCP1_euk FCP1-like p 96.9 0.0018 3.9E-08 51.6 5.0 53 133-186 57-112 (156)
118 PRK12702 mannosyl-3-phosphogly 96.7 0.0052 1.1E-07 54.0 7.0 37 139-175 23-60 (302)
119 COG0561 Cof Predicted hydrolas 96.7 0.0076 1.6E-07 51.1 7.6 16 54-69 1-16 (264)
120 PRK10976 putative hydrolase; P 96.7 0.0059 1.3E-07 51.8 6.8 15 56-70 2-16 (266)
121 PRK15126 thiamin pyrimidine py 96.6 0.0065 1.4E-07 51.8 7.0 15 56-70 2-16 (272)
122 PRK03669 mannosyl-3-phosphogly 96.6 0.01 2.2E-07 50.8 7.8 35 139-173 29-64 (271)
123 PLN02887 hydrolase family prot 96.5 0.0096 2.1E-07 56.9 8.1 36 138-173 329-365 (580)
124 COG0241 HisB Histidinol phosph 96.4 0.015 3.3E-07 47.6 7.6 66 134-201 31-117 (181)
125 smart00775 LNS2 LNS2 domain. T 96.4 0.0039 8.4E-08 49.7 4.0 26 136-161 29-54 (157)
126 COG4229 Predicted enolase-phos 96.3 0.033 7.1E-07 45.9 8.8 64 134-199 103-170 (229)
127 PF08645 PNK3P: Polynucleotide 96.3 0.0091 2E-07 47.6 5.6 64 135-201 30-109 (159)
128 COG2179 Predicted hydrolase of 96.0 0.024 5.2E-07 45.9 6.3 60 136-204 48-108 (175)
129 PRK14502 bifunctional mannosyl 95.6 0.034 7.5E-07 54.0 7.1 26 41-70 405-430 (694)
130 TIGR01525 ATPase-IB_hvy heavy 95.5 0.017 3.8E-07 54.7 4.7 46 134-179 384-431 (556)
131 PRK09484 3-deoxy-D-manno-octul 95.2 0.05 1.1E-06 44.1 5.7 52 142-202 56-108 (183)
132 PF13344 Hydrolase_6: Haloacid 95.2 0.057 1.2E-06 39.7 5.5 85 59-159 1-89 (101)
133 TIGR01512 ATPase-IB2_Cd heavy 95.1 0.029 6.2E-07 53.0 4.6 46 134-179 362-409 (536)
134 PF05761 5_nucleotid: 5' nucle 94.9 0.041 8.9E-07 51.1 4.9 51 136-190 185-245 (448)
135 TIGR01452 PGP_euk phosphoglyco 94.8 0.045 9.7E-07 47.2 4.7 51 135-185 19-73 (279)
136 PLN02499 glycerol-3-phosphate 94.8 0.33 7.2E-06 45.6 10.6 114 54-173 6-133 (498)
137 PLN02177 glycerol-3-phosphate 94.7 0.3 6.5E-06 46.0 10.2 35 135-173 111-147 (497)
138 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.4 0.059 1.3E-06 46.0 4.4 50 135-184 22-75 (257)
139 PTZ00174 phosphomannomutase; P 94.0 0.029 6.4E-07 47.5 1.8 17 54-70 3-19 (247)
140 COG2503 Predicted secreted aci 94.0 0.083 1.8E-06 45.3 4.4 44 134-177 122-170 (274)
141 PF11019 DUF2608: Protein of u 93.7 0.25 5.3E-06 42.4 6.9 37 136-172 83-123 (252)
142 TIGR01511 ATPase-IB1_Cu copper 93.5 0.079 1.7E-06 50.4 3.9 40 134-173 405-445 (562)
143 PRK09484 3-deoxy-D-manno-octul 93.5 0.035 7.7E-07 45.0 1.3 17 54-70 19-35 (183)
144 PLN02423 phosphomannomutase 93.0 0.056 1.2E-06 45.9 1.8 17 54-70 4-21 (245)
145 PRK10444 UMP phosphatase; Prov 93.0 0.13 2.9E-06 43.8 4.2 49 135-183 18-70 (248)
146 TIGR01522 ATPase-IIA2_Ca golgi 92.5 0.25 5.4E-06 49.5 6.0 56 134-189 528-584 (884)
147 TIGR01689 EcbF-BcbF capsule bi 92.3 0.084 1.8E-06 40.7 1.8 26 135-160 25-50 (126)
148 PF05152 DUF705: Protein of un 92.1 0.28 6.1E-06 43.0 4.9 60 135-194 143-203 (297)
149 TIGR01670 YrbI-phosphatas 3-de 91.2 0.1 2.3E-06 41.0 1.3 14 56-69 1-14 (154)
150 TIGR01460 HAD-SF-IIA Haloacid 91.2 0.34 7.3E-06 40.8 4.5 51 134-184 14-69 (236)
151 TIGR01460 HAD-SF-IIA Haloacid 89.7 1.5 3.2E-05 36.8 7.2 11 59-69 1-11 (236)
152 KOG4549 Magnesium-dependent ph 89.2 0.69 1.5E-05 36.0 4.3 39 134-172 44-84 (144)
153 PRK10671 copA copper exporting 89.1 0.51 1.1E-05 47.0 4.5 45 134-178 650-695 (834)
154 TIGR01684 viral_ppase viral ph 88.6 0.24 5.3E-06 43.6 1.7 17 54-70 124-140 (301)
155 PF03031 NIF: NLI interacting 88.4 0.93 2E-05 35.3 4.7 52 134-186 36-89 (159)
156 PF00702 Hydrolase: haloacid d 88.0 0.26 5.6E-06 39.5 1.4 15 56-70 1-15 (215)
157 KOG2470 Similar to IMP-GMP spe 88.0 0.54 1.2E-05 42.5 3.4 52 136-191 242-297 (510)
158 TIGR01482 SPP-subfamily Sucros 87.8 0.21 4.6E-06 40.8 0.8 12 59-70 1-12 (225)
159 PF08282 Hydrolase_3: haloacid 87.6 0.3 6.5E-06 39.8 1.5 11 59-69 1-11 (254)
160 TIGR02463 MPGP_rel mannosyl-3- 87.1 1.2 2.7E-05 36.4 5.0 36 138-173 20-56 (221)
161 COG5663 Uncharacterized conser 86.9 2.3 5.1E-05 34.7 6.2 90 58-161 8-98 (194)
162 TIGR02461 osmo_MPG_phos mannos 86.0 0.37 8E-06 40.4 1.2 12 58-69 1-12 (225)
163 PRK11033 zntA zinc/cadmium/mer 85.2 1.5 3.2E-05 43.3 5.1 41 134-174 568-609 (741)
164 PF03031 NIF: NLI interacting 85.1 0.41 8.9E-06 37.3 1.1 13 57-69 1-13 (159)
165 PLN02645 phosphoglycolate phos 85.1 0.22 4.9E-06 43.7 -0.5 62 140-202 176-243 (311)
166 TIGR02461 osmo_MPG_phos mannos 85.0 1.8 3.8E-05 36.2 4.9 40 135-174 16-56 (225)
167 TIGR00099 Cof-subfamily Cof su 84.9 0.45 9.8E-06 40.0 1.3 13 58-70 1-13 (256)
168 PRK06769 hypothetical protein; 84.7 0.62 1.3E-05 37.3 2.0 16 54-69 2-17 (173)
169 PF08282 Hydrolase_3: haloacid 84.6 2.9 6.2E-05 33.9 6.0 40 134-173 15-55 (254)
170 TIGR02726 phenyl_P_delta pheny 84.4 0.52 1.1E-05 38.0 1.4 15 55-69 6-20 (169)
171 COG0731 Fe-S oxidoreductases [ 84.3 1.9 4.2E-05 38.0 4.9 48 133-185 91-139 (296)
172 PF08645 PNK3P: Polynucleotide 84.2 0.56 1.2E-05 37.3 1.5 14 57-70 1-14 (159)
173 TIGR01457 HAD-SF-IIA-hyp2 HAD- 82.6 0.31 6.7E-06 41.4 -0.7 65 136-202 123-191 (249)
174 PHA03398 viral phosphatase sup 82.3 0.74 1.6E-05 40.6 1.6 17 54-70 126-142 (303)
175 TIGR00099 Cof-subfamily Cof su 81.8 2.8 6E-05 35.2 4.9 39 135-173 17-56 (256)
176 TIGR01484 HAD-SF-IIB HAD-super 81.6 0.73 1.6E-05 37.2 1.2 13 58-70 1-13 (204)
177 TIGR01486 HAD-SF-IIB-MPGP mann 81.4 4 8.7E-05 34.3 5.7 37 138-174 20-57 (256)
178 TIGR02463 MPGP_rel mannosyl-3- 81.4 0.79 1.7E-05 37.6 1.4 12 59-70 2-13 (221)
179 KOG2882 p-Nitrophenyl phosphat 80.5 4.1 9E-05 36.0 5.5 53 135-187 110-165 (306)
180 COG1778 Low specificity phosph 80.3 0.97 2.1E-05 36.4 1.4 16 54-69 6-21 (170)
181 COG2179 Predicted hydrolase of 80.0 1 2.3E-05 36.5 1.6 18 52-69 24-41 (175)
182 TIGR00213 GmhB_yaeD D,D-heptos 79.5 1.1 2.4E-05 35.7 1.5 13 57-69 2-14 (176)
183 PRK10187 trehalose-6-phosphate 79.2 1.1 2.4E-05 38.5 1.6 13 57-69 15-27 (266)
184 PRK13762 tRNA-modifying enzyme 79.0 5 0.00011 35.6 5.8 47 134-184 142-188 (322)
185 TIGR01486 HAD-SF-IIB-MPGP mann 78.5 0.96 2.1E-05 38.1 1.0 13 58-70 1-13 (256)
186 TIGR00685 T6PP trehalose-phosp 77.9 1.2 2.6E-05 37.5 1.4 13 57-69 4-16 (244)
187 PF09419 PGP_phosphatase: Mito 77.8 1.9 4.2E-05 34.8 2.5 17 53-69 38-54 (168)
188 COG4502 5'(3')-deoxyribonucleo 76.9 7.9 0.00017 30.8 5.6 54 129-183 63-123 (180)
189 KOG3040 Predicted sugar phosph 76.3 5.6 0.00012 33.7 4.9 17 54-70 5-21 (262)
190 TIGR01482 SPP-subfamily Sucros 75.4 5.5 0.00012 32.4 4.7 39 135-173 16-55 (225)
191 COG2217 ZntA Cation transport 74.6 4.6 0.0001 39.8 4.6 44 134-177 537-581 (713)
192 PRK01122 potassium-transportin 73.8 5.9 0.00013 38.9 5.1 41 135-175 446-487 (679)
193 TIGR02471 sucr_syn_bact_C sucr 73.7 1.6 3.4E-05 36.3 1.1 13 58-70 1-13 (236)
194 TIGR01497 kdpB K+-transporting 73.5 5.3 0.00012 39.2 4.7 42 134-175 446-488 (675)
195 PRK14010 potassium-transportin 72.7 6.8 0.00015 38.4 5.2 43 134-176 441-484 (673)
196 PF08235 LNS2: LNS2 (Lipin/Ned 70.0 11 0.00024 30.1 5.1 28 135-162 28-55 (157)
197 TIGR01484 HAD-SF-IIB HAD-super 69.9 13 0.00029 29.7 5.7 37 134-170 17-54 (204)
198 PRK14501 putative bifunctional 69.2 2.6 5.5E-05 41.4 1.5 16 54-69 490-505 (726)
199 TIGR01261 hisB_Nterm histidino 68.4 3.2 6.9E-05 33.0 1.7 14 57-70 2-15 (161)
200 PF05152 DUF705: Protein of un 67.0 3.8 8.2E-05 36.0 1.9 17 54-70 120-136 (297)
201 PF03332 PMM: Eukaryotic phosp 66.8 11 0.00023 32.0 4.5 44 139-183 1-45 (220)
202 TIGR01485 SPP_plant-cyano sucr 66.3 3.2 7E-05 34.8 1.4 12 58-69 3-14 (249)
203 KOG2882 p-Nitrophenyl phosphat 65.4 10 0.00022 33.5 4.3 40 134-173 38-81 (306)
204 PF09419 PGP_phosphatase: Mito 63.7 16 0.00035 29.5 4.9 39 134-172 59-107 (168)
205 TIGR01663 PNK-3'Pase polynucle 62.3 4.7 0.0001 38.4 1.8 16 54-69 166-181 (526)
206 smart00577 CPDc catalytic doma 61.7 5.1 0.00011 31.0 1.6 14 57-70 3-16 (148)
207 COG1877 OtsB Trehalose-6-phosp 61.6 5.6 0.00012 34.5 2.0 16 54-69 16-31 (266)
208 TIGR01456 CECR5 HAD-superfamil 61.2 7.6 0.00017 34.2 2.8 50 133-182 15-73 (321)
209 TIGR01485 SPP_plant-cyano sucr 60.5 21 0.00045 29.8 5.3 45 135-180 22-67 (249)
210 PF08235 LNS2: LNS2 (Lipin/Ned 60.3 5.5 0.00012 31.9 1.6 15 58-72 1-15 (157)
211 KOG3040 Predicted sugar phosph 59.9 13 0.00029 31.5 3.8 40 134-173 23-66 (262)
212 COG5083 SMP2 Uncharacterized p 59.9 6.5 0.00014 36.7 2.2 26 57-82 376-401 (580)
213 TIGR03365 Bsubt_queE 7-cyano-7 59.8 9.5 0.00021 32.2 3.1 27 135-161 85-111 (238)
214 TIGR01689 EcbF-BcbF capsule bi 59.1 13 0.00028 28.6 3.4 14 56-69 1-14 (126)
215 KOG0207 Cation transport ATPas 58.2 19 0.00041 36.5 5.1 39 134-172 723-762 (951)
216 TIGR01647 ATPase-IIIA_H plasma 57.3 21 0.00045 35.4 5.4 41 134-174 442-483 (755)
217 COG0241 HisB Histidinol phosph 56.9 7.9 0.00017 31.7 2.0 24 56-79 5-30 (181)
218 PRK10517 magnesium-transportin 56.8 18 0.00039 36.6 5.0 52 134-187 550-602 (902)
219 TIGR01116 ATPase-IIA1_Ca sarco 56.8 19 0.00041 36.5 5.1 41 134-174 537-578 (917)
220 TIGR02251 HIF-SF_euk Dullard-l 56.1 6.3 0.00014 31.2 1.3 14 57-70 2-15 (162)
221 PF05822 UMPH-1: Pyrimidine 5' 56.0 18 0.00039 31.1 4.2 50 122-171 77-128 (246)
222 PLN03017 trehalose-phosphatase 55.8 7.2 0.00016 35.4 1.8 12 57-68 112-123 (366)
223 PLN02382 probable sucrose-phos 55.5 7.5 0.00016 35.7 1.9 13 58-70 11-23 (413)
224 TIGR02495 NrdG2 anaerobic ribo 55.5 50 0.0011 26.2 6.5 26 135-160 75-100 (191)
225 TIGR01668 YqeG_hyp_ppase HAD s 54.3 9 0.0002 30.4 2.0 16 54-69 23-38 (170)
226 TIGR02826 RNR_activ_nrdG3 anae 54.1 22 0.00047 27.9 4.1 24 137-160 75-98 (147)
227 PRK15122 magnesium-transportin 53.3 23 0.00051 35.9 5.1 52 134-187 550-602 (903)
228 KOG0202 Ca2+ transporting ATPa 53.1 28 0.00061 35.2 5.4 72 134-205 584-660 (972)
229 COG3769 Predicted hydrolase (H 52.9 21 0.00045 30.6 3.9 35 139-173 28-63 (274)
230 PLN02205 alpha,alpha-trehalose 51.9 7.9 0.00017 39.0 1.5 15 55-69 595-609 (854)
231 TIGR02245 HAD_IIID1 HAD-superf 51.9 8.6 0.00019 31.8 1.5 13 57-69 22-34 (195)
232 PLN02151 trehalose-phosphatase 51.4 8.3 0.00018 34.9 1.4 36 158-197 269-306 (354)
233 COG4030 Uncharacterized protei 51.2 1.5E+02 0.0032 25.7 8.8 49 123-172 72-121 (315)
234 PLN02580 trehalose-phosphatase 50.9 9.4 0.0002 34.9 1.7 13 57-69 120-132 (384)
235 PTZ00174 phosphomannomutase; P 49.5 41 0.00089 28.2 5.4 27 134-160 22-48 (247)
236 TIGR01524 ATPase-IIIB_Mg magne 49.4 32 0.0007 34.7 5.4 49 135-185 516-565 (867)
237 TIGR01517 ATPase-IIB_Ca plasma 49.2 38 0.00083 34.4 5.9 52 134-185 579-631 (941)
238 KOG2630 Enolase-phosphatase E- 48.7 31 0.00067 29.6 4.3 67 134-202 123-193 (254)
239 TIGR02250 FCP1_euk FCP1-like p 46.6 14 0.00029 29.3 1.8 14 57-70 7-20 (156)
240 KOG0323 TFIIF-interacting CTD 45.9 44 0.00095 32.7 5.4 53 134-187 201-256 (635)
241 KOG2134 Polynucleotide kinase 44.7 14 0.0003 34.0 1.8 15 56-70 75-89 (422)
242 COG5610 Predicted hydrolase (H 44.4 74 0.0016 30.2 6.4 66 136-201 101-169 (635)
243 PRK05301 pyrroloquinoline quin 44.3 40 0.00086 30.2 4.7 27 134-160 74-100 (378)
244 PF02358 Trehalose_PPase: Treh 44.1 11 0.00024 31.3 1.1 10 60-69 1-10 (235)
245 PRK10076 pyruvate formate lyas 44.0 22 0.00049 29.6 2.8 25 136-160 52-77 (213)
246 TIGR02471 sucr_syn_bact_C sucr 43.9 56 0.0012 26.9 5.3 40 139-180 20-60 (236)
247 TIGR02109 PQQ_syn_pqqE coenzym 43.0 45 0.00098 29.4 4.8 26 135-160 66-91 (358)
248 TIGR02244 HAD-IG-Ncltidse HAD 42.9 15 0.00032 33.1 1.7 17 53-69 9-25 (343)
249 TIGR03470 HpnH hopanoid biosyn 41.6 26 0.00057 30.8 3.0 27 134-160 84-110 (318)
250 COG3700 AphA Acid phosphatase 41.5 1.1E+02 0.0024 25.5 6.3 44 138-181 118-166 (237)
251 PRK05446 imidazole glycerol-ph 40.1 19 0.00041 32.6 1.9 15 56-70 2-16 (354)
252 TIGR02886 spore_II_AA anti-sig 38.9 59 0.0013 23.1 4.1 37 140-177 61-97 (106)
253 TIGR02668 moaA_archaeal probab 38.9 1.3E+02 0.0027 25.9 6.9 26 135-160 69-95 (302)
254 TIGR02494 PFLE_PFLC glycyl-rad 38.8 46 0.00099 28.6 4.1 26 135-160 138-164 (295)
255 TIGR01523 ATPase-IID_K-Na pota 38.5 54 0.0012 33.9 5.1 40 134-173 646-686 (1053)
256 cd05008 SIS_GlmS_GlmD_1 SIS (S 38.3 37 0.0008 24.8 3.0 25 136-160 59-83 (126)
257 TIGR01494 ATPase_P-type ATPase 37.7 59 0.0013 30.3 4.9 39 134-172 347-386 (499)
258 cd05014 SIS_Kpsf KpsF-like pro 37.6 39 0.00085 24.8 3.1 26 135-160 59-84 (128)
259 TIGR02245 HAD_IIID1 HAD-superf 37.4 55 0.0012 27.0 4.1 37 135-172 46-83 (195)
260 PHA02530 pseT polynucleotide k 36.9 23 0.0005 30.3 1.9 15 55-69 157-171 (300)
261 TIGR02493 PFLA pyruvate format 36.8 75 0.0016 26.1 5.0 25 135-159 78-103 (235)
262 KOG1618 Predicted phosphatase 36.7 35 0.00077 30.8 3.0 37 43-79 20-60 (389)
263 cd05710 SIS_1 A subgroup of th 36.3 1.1E+02 0.0025 22.4 5.4 25 136-160 60-84 (120)
264 TIGR01106 ATPase-IIC_X-K sodiu 35.0 63 0.0014 33.2 4.9 40 134-173 568-608 (997)
265 COG1763 MobB Molybdopterin-gua 34.1 42 0.00091 26.9 2.9 21 139-159 19-39 (161)
266 PRK10187 trehalose-6-phosphate 34.1 60 0.0013 27.7 4.0 38 134-171 36-75 (266)
267 TIGR03278 methan_mark_10 putat 32.4 69 0.0015 29.5 4.3 26 135-160 87-113 (404)
268 KOG3189 Phosphomannomutase [Li 32.0 26 0.00057 29.5 1.4 12 58-69 13-24 (252)
269 cd05006 SIS_GmhA Phosphoheptos 32.0 1.5E+02 0.0032 23.3 5.8 39 136-182 114-152 (177)
270 TIGR01652 ATPase-Plipid phosph 31.8 67 0.0014 33.2 4.5 40 134-173 631-671 (1057)
271 COG0474 MgtA Cation transport 31.5 1.3E+02 0.0028 30.7 6.4 61 134-195 547-610 (917)
272 PF01726 LexA_DNA_bind: LexA D 31.4 1.5E+02 0.0032 19.9 4.8 42 108-151 13-55 (65)
273 COG3769 Predicted hydrolase (H 31.1 31 0.00066 29.6 1.6 14 56-69 7-20 (274)
274 COG1778 Low specificity phosph 31.0 74 0.0016 25.8 3.7 42 135-178 38-80 (170)
275 COG1180 PflA Pyruvate-formate 30.6 53 0.0011 28.2 3.1 25 136-160 98-122 (260)
276 KOG4079 Putative mitochondrial 30.6 53 0.0011 25.9 2.8 57 13-83 54-110 (169)
277 cd02071 MM_CoA_mut_B12_BD meth 30.6 1.1E+02 0.0024 22.6 4.6 43 135-177 63-108 (122)
278 PLN03063 alpha,alpha-trehalose 30.3 27 0.00058 35.0 1.4 13 57-69 508-520 (797)
279 KOG2469 IMP-GMP specific 5'-nu 30.0 26 0.00056 32.4 1.1 52 137-192 201-256 (424)
280 PRK11145 pflA pyruvate formate 30.0 55 0.0012 27.3 3.0 26 135-160 83-109 (246)
281 TIGR01657 P-ATPase-V P-type AT 29.4 1.2E+02 0.0027 31.3 6.0 41 134-174 656-697 (1054)
282 cd07043 STAS_anti-anti-sigma_f 29.1 1E+02 0.0022 21.0 3.9 38 139-177 59-96 (99)
283 COG0602 NrdG Organic radical a 29.0 52 0.0011 27.4 2.7 25 136-160 85-109 (212)
284 PF00696 AA_kinase: Amino acid 28.7 1.2E+02 0.0026 24.8 4.9 41 136-176 19-59 (242)
285 PF12990 DUF3874: Domain of un 28.7 98 0.0021 21.5 3.6 35 138-173 27-61 (73)
286 PF00875 DNA_photolyase: DNA p 28.4 1.4E+02 0.003 23.2 5.0 25 136-160 52-76 (165)
287 PF05402 PqqD: Coenzyme PQQ sy 28.3 61 0.0013 21.2 2.5 45 95-151 22-66 (68)
288 PLN03064 alpha,alpha-trehalose 28.2 34 0.00073 35.0 1.7 13 57-69 592-604 (934)
289 COG4850 Uncharacterized conser 28.1 81 0.0017 28.5 3.8 27 134-160 196-223 (373)
290 PF03033 Glyco_transf_28: Glyc 27.8 1.1E+02 0.0023 22.5 4.1 32 139-172 15-46 (139)
291 TIGR03127 RuMP_HxlB 6-phospho 27.6 68 0.0015 25.3 3.1 25 136-160 85-109 (179)
292 cd04906 ACT_ThrD-I_1 First of 27.5 70 0.0015 22.2 2.8 23 138-160 54-76 (85)
293 PF01380 SIS: SIS domain SIS d 27.0 83 0.0018 22.8 3.3 25 136-160 66-90 (131)
294 PF05240 APOBEC_C: APOBEC-like 26.6 86 0.0019 20.6 2.8 23 137-159 2-24 (55)
295 PF13439 Glyco_transf_4: Glyco 26.5 77 0.0017 23.5 3.1 21 140-160 19-39 (177)
296 TIGR02803 ExbD_1 TonB system t 26.4 83 0.0018 23.4 3.2 25 134-158 96-121 (122)
297 PF05761 5_nucleotid: 5' nucle 25.9 40 0.00086 31.5 1.6 16 54-69 10-25 (448)
298 cd04795 SIS SIS domain. SIS (S 25.8 88 0.0019 20.9 3.0 22 136-157 60-81 (87)
299 PF13394 Fer4_14: 4Fe-4S singl 25.6 32 0.00069 25.0 0.8 24 137-160 65-90 (119)
300 cd06589 GH31 The enzymes of gl 25.2 73 0.0016 27.1 3.0 31 135-165 64-96 (265)
301 KOG2469 IMP-GMP specific 5'-nu 25.0 75 0.0016 29.4 3.1 16 54-69 25-40 (424)
302 cd06533 Glyco_transf_WecG_TagA 24.1 1.9E+02 0.004 23.0 5.0 22 141-162 37-58 (171)
303 cd05013 SIS_RpiR RpiR-like pro 23.9 98 0.0021 22.4 3.2 24 137-160 74-97 (139)
304 PF02606 LpxK: Tetraacyldisacc 23.8 76 0.0017 28.2 2.9 23 137-159 52-74 (326)
305 PF00588 SpoU_methylase: SpoU 23.7 52 0.0011 24.9 1.7 51 135-189 60-110 (142)
306 COG1117 PstB ABC-type phosphat 23.6 1.2E+02 0.0026 26.1 3.9 28 138-166 187-214 (253)
307 PF04055 Radical_SAM: Radical 23.5 2E+02 0.0043 21.0 4.9 66 135-201 58-135 (166)
308 PLN03190 aminophospholipid tra 23.1 1.5E+02 0.0032 31.3 5.2 39 134-172 726-765 (1178)
309 cd05017 SIS_PGI_PMI_1 The memb 23.0 1.1E+02 0.0023 22.5 3.2 25 136-160 56-80 (119)
310 PF09851 SHOCT: Short C-termin 22.5 97 0.0021 17.6 2.3 15 98-112 11-25 (31)
311 PRK15482 transcriptional regul 22.3 2.1E+02 0.0045 24.4 5.3 26 135-160 194-219 (285)
312 PF02142 MGS: MGS-like domain 22.2 1.2E+02 0.0026 21.4 3.2 21 138-158 1-21 (95)
313 PRK13361 molybdenum cofactor b 22.0 1.7E+02 0.0037 25.7 4.8 26 135-160 74-101 (329)
314 PF13426 PAS_9: PAS domain; PD 21.4 1.1E+02 0.0024 20.3 2.9 28 58-87 4-31 (104)
315 cd05005 SIS_PHI Hexulose-6-pho 21.3 1.1E+02 0.0023 24.2 3.1 25 136-160 88-112 (179)
316 PRK13937 phosphoheptose isomer 21.3 1E+02 0.0023 24.7 3.1 25 136-160 119-143 (188)
317 smart00851 MGS MGS-like domain 21.2 1.3E+02 0.0028 20.9 3.2 15 140-154 3-17 (90)
318 PF08094 Toxin_24: Conotoxin T 21.0 29 0.00062 20.0 -0.2 11 37-47 9-19 (33)
319 cd06595 GH31_xylosidase_XylS-l 21.0 98 0.0021 26.8 3.0 25 134-158 71-95 (292)
320 PF01740 STAS: STAS domain; I 20.9 1.8E+02 0.0039 20.8 4.1 38 138-176 68-105 (117)
321 TIGR00682 lpxK tetraacyldisacc 20.8 1E+02 0.0022 27.3 3.1 22 137-158 45-66 (311)
322 TIGR02666 moaA molybdenum cofa 20.7 1.9E+02 0.0041 25.3 4.8 26 135-160 72-99 (334)
323 COG2810 Predicted type IV rest 20.7 74 0.0016 27.5 2.1 26 137-162 84-109 (284)
324 cd06592 GH31_glucosidase_KIAA1 20.6 99 0.0021 26.9 3.0 25 134-158 67-91 (303)
325 TIGR00441 gmhA phosphoheptose 20.1 1.2E+02 0.0026 23.5 3.1 25 136-160 92-116 (154)
326 PF13353 Fer4_12: 4Fe-4S singl 20.1 1.3E+02 0.0028 22.2 3.2 25 136-160 69-94 (139)
327 PF01325 Fe_dep_repress: Iron 20.1 2.3E+02 0.0049 18.5 4.0 43 107-152 7-52 (60)
No 1
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.88 E-value=1.6e-21 Score=159.97 Aligned_cols=146 Identities=15% Similarity=0.157 Sum_probs=111.5
Q ss_pred CeEEEEcCCcccCCChhchH---HHHHcCCHHHHHHhhC-chHHHHHHhCCCCHHHHHHHHhhc-CCCCCHHHHHHHHHh
Q 028543 57 PILLFDIMDTIVRDPFYHDV---PAFFGMSMKELIECKH-PNAWIEFEMGMISEMELARKFFTD-GRPFDLEGLKICMKK 131 (207)
Q Consensus 57 ~~IlFDLDGTLvD~~~~~~l---~~~~g~~~~~~~~~~~-~~~w~~~e~G~Is~~e~~~~~~~~-g~~~~~~~l~~~~~~ 131 (207)
.+||||+||||+|.+....+ ....+....++...+. ...|.+++.|.++..++++.+.+. +.+.+.+++...+..
T Consensus 1 ~~viFDldgvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSDLSRVPLATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALSLSYEQFAHGWQA 80 (199)
T ss_pred CEEEEeCCCccccCcHHHHHHHHHHhcCCCHHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 37999999999996544433 3234556666655443 357999999999999998887765 555555666555543
Q ss_pred c-CCcchhHHHHHHHHhHCCCeEEEEcCcHHHH-HHHHHh-CCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 132 G-YAYLDGVEELLHELKQSNYEMHAFTNYPIWY-EIIEDK-LKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 132 ~-~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~-~~il~~-~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
. ..++||+.++|+.|+++|++++|+||++... +..+.. .++..+||.+++|++++..||+|++|+.++...
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~ 154 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAE 154 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHc
Confidence 2 3689999999999999999999999997543 333333 478899999999999999999999999998764
No 2
>PRK09449 dUMP phosphatase; Provisional
Probab=99.87 E-value=2.5e-21 Score=160.74 Aligned_cols=146 Identities=18% Similarity=0.267 Sum_probs=105.1
Q ss_pred CCCCeEEEEcCCcccCCChhchHHHHH---cCC--HHHHH--HhhCchHHHHHHhCCCCHHHHHHH----Hhhc-CCCCC
Q 028543 54 RKLPILLFDIMDTIVRDPFYHDVPAFF---GMS--MKELI--ECKHPNAWIEFEMGMISEMELARK----FFTD-GRPFD 121 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~~~~~~l~~~~---g~~--~~~~~--~~~~~~~w~~~e~G~Is~~e~~~~----~~~~-g~~~~ 121 (207)
|++++|+||+||||+|.....++.+++ |.+ .+.+. .......|..++.|.++..++... +.+. +. +
T Consensus 1 m~~k~iiFDlDGTLid~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 78 (224)
T PRK09449 1 MKYDWILFDADETLFHFDAFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNV--T 78 (224)
T ss_pred CCccEEEEcCCCchhcchhhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC--C
Confidence 468899999999999844444454443 543 23222 124446788888888887655422 2222 32 2
Q ss_pred HHHHHH----HHHhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHH
Q 028543 122 LEGLKI----CMKKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKER 196 (207)
Q Consensus 122 ~~~l~~----~~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~ 196 (207)
.+++.+ .+.....++||+.++|++|+ +|++++|+||++.. ....++.+++.+|||.+++|++++..||+|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~ 157 (224)
T PRK09449 79 PGELNSAFLNAMAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFD 157 (224)
T ss_pred HHHHHHHHHHHHhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHH
Confidence 333333 33344678999999999999 57999999998754 4456799999999999999999999999999999
Q ss_pred Hhhhhh
Q 028543 197 GNLILI 202 (207)
Q Consensus 197 ~~~~~~ 202 (207)
.++...
T Consensus 158 ~~~~~~ 163 (224)
T PRK09449 158 YALEQM 163 (224)
T ss_pred HHHHHc
Confidence 998754
No 3
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.83 E-value=1.8e-19 Score=148.73 Aligned_cols=146 Identities=21% Similarity=0.192 Sum_probs=103.8
Q ss_pred CCeEEEEcCCcccCC--ChhchHHHHH---cCCH--HHH--HHhhCchHHHHHHhCCCCHHHHH----HHHhhc-CCCCC
Q 028543 56 LPILLFDIMDTIVRD--PFYHDVPAFF---GMSM--KEL--IECKHPNAWIEFEMGMISEMELA----RKFFTD-GRPFD 121 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~--~~~~~l~~~~---g~~~--~~~--~~~~~~~~w~~~e~G~Is~~e~~----~~~~~~-g~~~~ 121 (207)
+++|+||+||||+|. ....++.+++ |... +.. +.......|..+..|.++..++. +.+++. +.+.+
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEAD 80 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCc
Confidence 579999999999993 2333455543 5432 111 12233456777888888876543 233333 43333
Q ss_pred HHHHHHHHH----hcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHH
Q 028543 122 LEGLKICMK----KGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKER 196 (207)
Q Consensus 122 ~~~l~~~~~----~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~ 196 (207)
.+.+.+.+. ....++||+.++|++|+++ ++++|+||+... .+..++.+++..+||.+++|++++..||+|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~ 159 (224)
T TIGR02254 81 EALLNQKYLRFLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFN 159 (224)
T ss_pred HHHHHHHHHHHHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHH
Confidence 333433332 3357899999999999999 999999998754 4557899999999999999999999999999999
Q ss_pred Hhhhhh
Q 028543 197 GNLILI 202 (207)
Q Consensus 197 ~~~~~~ 202 (207)
.++...
T Consensus 160 ~~~~~~ 165 (224)
T TIGR02254 160 YALERM 165 (224)
T ss_pred HHHHHh
Confidence 998754
No 4
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.83 E-value=9e-20 Score=148.88 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=95.1
Q ss_pred CCeEEEEcCCcccCC-ChhchHHHHHcCCHHHH----HHhhCchHHHHHHhCCC-CHH----HHHHHHhhc-CCCCCHHH
Q 028543 56 LPILLFDIMDTIVRD-PFYHDVPAFFGMSMKEL----IECKHPNAWIEFEMGMI-SEM----ELARKFFTD-GRPFDLEG 124 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~-~~~~~l~~~~g~~~~~~----~~~~~~~~w~~~e~G~I-s~~----e~~~~~~~~-g~~~~~~~ 124 (207)
+++|+||+||||+|. +....+.+.++....+. ........|.....|.. +.. +.++.+++. |.+.+.+.
T Consensus 1 ik~viFD~dgTLiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 80 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSVVERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLEDDESA 80 (198)
T ss_pred CcEEEEeCCCcCccHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 368999999999993 23333444443221111 11111112222223322 222 223334433 54444332
Q ss_pred HHHHH--HhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhh
Q 028543 125 LKICM--KKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLIL 201 (207)
Q Consensus 125 l~~~~--~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~ 201 (207)
..... .....++||+.++|++|+++|++++|+||++.. ....++++|+.++||.+++|++++..||+|++|+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 160 (198)
T TIGR01428 81 ADRLAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEA 160 (198)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHH
Confidence 22221 134578899999999999999999999999854 555778999999999999999999999999999999875
Q ss_pred h
Q 028543 202 I 202 (207)
Q Consensus 202 ~ 202 (207)
.
T Consensus 161 ~ 161 (198)
T TIGR01428 161 L 161 (198)
T ss_pred h
Confidence 4
No 5
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.82 E-value=1.6e-19 Score=153.12 Aligned_cols=147 Identities=15% Similarity=0.176 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCcccCC-C--hhchHHHHH---cC--CHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CCCCCH---
Q 028543 55 KLPILLFDIMDTIVRD-P--FYHDVPAFF---GM--SMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GRPFDL--- 122 (207)
Q Consensus 55 ~~~~IlFDLDGTLvD~-~--~~~~l~~~~---g~--~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~~~~~--- 122 (207)
|+++||||+||||+|+ . ...++.+++ |. +.+++....+...|..+.. ..+..+..+.+.+. +.+.+.
T Consensus 1 ~~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T TIGR01422 1 KIEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRA-LLKMPAVAERWRAKFGRLPTEADI 79 (253)
T ss_pred CceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHH-HhcCHHHHHHHHHHhCCCCCHHHH
Confidence 4689999999999995 2 234455554 43 3344443333333332221 11111222222222 322222
Q ss_pred HHHHHHH--------HhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCccccc-CeEEEccccCCCCCCh
Q 028543 123 EGLKICM--------KKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYL-SWTFCSCVIGMFSKQC 192 (207)
Q Consensus 123 ~~l~~~~--------~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yF-D~v~~S~evg~~KPdP 192 (207)
+++...+ .....++||+.++|++|+++|++++|+||++.. .+.+++++++.+|| |.|++|++++..||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p 159 (253)
T TIGR01422 80 EAIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAP 159 (253)
T ss_pred HHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCH
Confidence 2221222 234578999999999999999999999999854 55577899999996 9999999999999999
Q ss_pred HHHHHhhhhh
Q 028543 193 LKERGNLILI 202 (207)
Q Consensus 193 eiy~~~~~~~ 202 (207)
++|+.++...
T Consensus 160 ~~~~~a~~~l 169 (253)
T TIGR01422 160 WMALKNAIEL 169 (253)
T ss_pred HHHHHHHHHc
Confidence 9999998754
No 6
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.82 E-value=1.1e-19 Score=152.53 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCcccCCChhch-HH--------HHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CCCCCHH
Q 028543 54 RKLPILLFDIMDTIVRDPFYHD-VP--------AFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GRPFDLE 123 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~~~~~~-l~--------~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~~~~~~ 123 (207)
+++++|||||||||+|+.+... +. +.+|.+.++....+.. .+... .+..+. +..+.+.+. +.. ..
T Consensus 8 ~~~k~vIFDlDGTL~d~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~--~~ 82 (224)
T PRK14988 8 QDVDTVLLDMDGTLLDLAFDNYFWQKLVPETLGAQRGISPQEAQEYIRQ-EYHAV-QHTLNW-YCLDYWSERLGLD--IC 82 (224)
T ss_pred ccCCEEEEcCCCCccchhhhchHHHhhHHHHHHHHhCcCHHHHHHHHHH-HHHHH-cCccce-ecHHHHHHHhCCC--HH
Confidence 6678999999999999532221 22 2235554443322111 01100 011110 111112111 221 11
Q ss_pred HHHHHHHhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 124 GLKICMKKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 124 ~l~~~~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
...........++||+.++|+.|+++|++++|+||++.. ....++++++.+|||.+++|++++..||+|++|+.++...
T Consensus 83 ~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~ 162 (224)
T PRK14988 83 AMTTEQGPRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHT 162 (224)
T ss_pred HHHHHHhccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHc
Confidence 222223344678999999999999999999999998754 4456788999999999999999999999999999987653
No 7
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.82 E-value=1.3e-19 Score=149.40 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=100.8
Q ss_pred CCeEEEEcCCcccCCCh-hchHHHHH---cCCHHHHHHhh---CchHHHH-HHhCCCCHHHHHHHHhhc-CC----CCCH
Q 028543 56 LPILLFDIMDTIVRDPF-YHDVPAFF---GMSMKELIECK---HPNAWIE-FEMGMISEMELARKFFTD-GR----PFDL 122 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~~~-~~~l~~~~---g~~~~~~~~~~---~~~~w~~-~e~G~Is~~e~~~~~~~~-g~----~~~~ 122 (207)
+++|||||||||+|+.. ..++...+ |.+.++....+ ....|.+ ++.|.++.+++.+.+.+. +. +...
T Consensus 2 ik~viFDldGtL~d~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPGVMRRWETERGLPGLKDFIVTVNITGPDFNPWARTFERGELTAEAFDGLFRHEYGLRLGHDVRI 81 (211)
T ss_pred ceEEEEecCCceecCHHHHHHHHHHcCCCCCccHHHHHHhcCCCCChHHHHHHcCCCCHHHHHHHHHHHhccccCCCcCc
Confidence 46899999999999532 33355443 33333322221 2234655 788988887777655432 21 1222
Q ss_pred HHHHHHHH-hcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH---HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHh
Q 028543 123 EGLKICMK-KGYAYLDGVEELLHELKQSNYEMHAFTNYPIW---YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGN 198 (207)
Q Consensus 123 ~~l~~~~~-~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~---~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~ 198 (207)
++....+. ....++||+.++|+.|+++|++++|+||++.. ....+...++.++||.+++|++++..||+|++|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~ 161 (211)
T TIGR02247 82 APVFPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLM 161 (211)
T ss_pred hhhHHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHH
Confidence 33333332 34678999999999999999999999998632 222234568889999999999999999999999999
Q ss_pred hhhh
Q 028543 199 LILI 202 (207)
Q Consensus 199 ~~~~ 202 (207)
+...
T Consensus 162 ~~~~ 165 (211)
T TIGR02247 162 LERL 165 (211)
T ss_pred HHHc
Confidence 8654
No 8
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.82 E-value=1.2e-19 Score=154.19 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=65.0
Q ss_pred hcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 131 KGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 131 ~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
....++||+.++|++|+++|++++|+||++.. ....++++++.+|||.++++++++..||+|++|+.++...
T Consensus 105 ~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~ 177 (248)
T PLN02770 105 EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVL 177 (248)
T ss_pred hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHh
Confidence 34678999999999999999999999999754 5557899999999999999999999999999999998764
No 9
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.81 E-value=4e-19 Score=145.42 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=95.3
Q ss_pred CeEEEEcCCcccCC--ChhchHHHHH---cCC--HHHHHHhh---Cc---hHHHHHH--hCCCCHHHHHHHHhh----c-
Q 028543 57 PILLFDIMDTIVRD--PFYHDVPAFF---GMS--MKELIECK---HP---NAWIEFE--MGMISEMELARKFFT----D- 116 (207)
Q Consensus 57 ~~IlFDLDGTLvD~--~~~~~l~~~~---g~~--~~~~~~~~---~~---~~w~~~e--~G~Is~~e~~~~~~~----~- 116 (207)
++|+||+||||+|+ .+..++.+++ |.+ .+++...+ .. ..|..+. .| ++..+++..++. .
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 79 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSG-LTPQQWWQKLVRDTFGRA 79 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCHHHHHHHHHHHHHHhc
Confidence 47999999999993 3455555554 443 22221110 00 1121111 13 555555444332 2
Q ss_pred CCCC--CHHHHHHHHHh------cCCcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEccccCCC
Q 028543 117 GRPF--DLEGLKICMKK------GYAYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCVIGMF 188 (207)
Q Consensus 117 g~~~--~~~~l~~~~~~------~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~evg~~ 188 (207)
+... ...++...+.. ...++||+.++|++|+++|++++|+||+....+..++.+++..+||.+++|++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~~s~~~~~~ 159 (203)
T TIGR02252 80 GVPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSRLRGLLEALGLLEYFDFVVTSYEVGAE 159 (203)
T ss_pred CCCCchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHCCcHHhcceEEeecccCCC
Confidence 3211 12222222221 236789999999999999999999999876666677899999999999999999999
Q ss_pred CCChHHHHHhhhhh
Q 028543 189 SKQCLKERGNLILI 202 (207)
Q Consensus 189 KPdPeiy~~~~~~~ 202 (207)
||+|++|+.++...
T Consensus 160 KP~~~~~~~~~~~~ 173 (203)
T TIGR02252 160 KPDPKIFQEALERA 173 (203)
T ss_pred CCCHHHHHHHHHHc
Confidence 99999999998654
No 10
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.80 E-value=3.5e-19 Score=149.29 Aligned_cols=140 Identities=19% Similarity=0.170 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCcccCC-Chhc-hHHHHH---cCC--HHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHH
Q 028543 55 KLPILLFDIMDTIVRD-PFYH-DVPAFF---GMS--MKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKI 127 (207)
Q Consensus 55 ~~~~IlFDLDGTLvD~-~~~~-~l~~~~---g~~--~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~ 127 (207)
++++|||||||||||+ +.+. +|.+++ |.. .+..........|. ...............+....+.
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 72 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIAR--------IIDLLRKLAAGEDPADLAELER 72 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHH--------HHHHHHHHhcCCcccCHHHHHH
Confidence 3689999999999994 4433 466665 432 22222222211111 0122222211111012222211
Q ss_pred -------HHHhcCCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhh
Q 028543 128 -------CMKKGYAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNL 199 (207)
Q Consensus 128 -------~~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~ 199 (207)
.......++||+.++|+.|+++|.+++++||++. ..++.++.+|+.+||+.+++++++...||+|++|+.|.
T Consensus 73 ~~~~~~~~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa 152 (221)
T COG0637 73 LLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAA 152 (221)
T ss_pred HHHHHHHhhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHH
Confidence 1223457899999999999999999999999974 56778899999999999999999999999999999998
Q ss_pred hhh
Q 028543 200 ILI 202 (207)
Q Consensus 200 ~~~ 202 (207)
..+
T Consensus 153 ~~L 155 (221)
T COG0637 153 ERL 155 (221)
T ss_pred HHc
Confidence 764
No 11
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.80 E-value=6.3e-19 Score=151.34 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCcccCC-C-hh-chHHHHH---cCC--HHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCC-CHHHH
Q 028543 55 KLPILLFDIMDTIVRD-P-FY-HDVPAFF---GMS--MKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPF-DLEGL 125 (207)
Q Consensus 55 ~~~~IlFDLDGTLvD~-~-~~-~~l~~~~---g~~--~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~-~~~~l 125 (207)
.+++|||||||||+|+ + .+ .++..++ |.. .++.... ..| .+..+.++.++...... ..+++
T Consensus 23 ~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~---------~~G-~~~~~~~~~l~~~~~~~~~~~~l 92 (260)
T PLN03243 23 GWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKR---------AEG-MKNEQAISEVLCWSRDFLQMKRL 92 (260)
T ss_pred CceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHH---------hcC-CCHHHHHHHHhccCCCHHHHHHH
Confidence 4579999999999996 3 33 3566654 332 2222211 123 22233333333211110 01111
Q ss_pred HH----H---HH-hcCCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHH
Q 028543 126 KI----C---MK-KGYAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKER 196 (207)
Q Consensus 126 ~~----~---~~-~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~ 196 (207)
.. . +. ....++||+.++|+.|+++|++++|+||++. ....+++++++.+|||.++++++++..||+|++|+
T Consensus 93 ~~~~~~~~~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~ 172 (260)
T PLN03243 93 AIRKEDLYEYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFM 172 (260)
T ss_pred HHHHHHHHHHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHH
Confidence 11 1 11 2356899999999999999999999999974 45567899999999999999999999999999999
Q ss_pred Hhhhhhh
Q 028543 197 GNLILIF 203 (207)
Q Consensus 197 ~~~~~~~ 203 (207)
.|+...-
T Consensus 173 ~a~~~l~ 179 (260)
T PLN03243 173 YAAERLG 179 (260)
T ss_pred HHHHHhC
Confidence 9987643
No 12
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.79 E-value=1e-18 Score=140.34 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=93.1
Q ss_pred CCeEEEEcCCcccCC-Chh-chHHHHH---cCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CCCCCHHHH---H
Q 028543 56 LPILLFDIMDTIVRD-PFY-HDVPAFF---GMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GRPFDLEGL---K 126 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~-~~~-~~l~~~~---g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~~~~~~~l---~ 126 (207)
+++|+||+||||+|+ +.+ .++..++ |.+. ...|.....| .+..+.++.+.+. +...+.+++ .
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEF--------DKQYNTSLGG-LSREDILRAILKLRKPGLSLETIHQLA 71 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCC--------CHHHHHHcCC-CCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 578999999999994 222 2344333 2221 1223333345 4445555555543 222222221 1
Q ss_pred ----HHHH-----hcCCcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEccccCCCCCChHHHHH
Q 028543 127 ----ICMK-----KGYAYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERG 197 (207)
Q Consensus 127 ----~~~~-----~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~ 197 (207)
..+. ....++||+.++|+.|+++|++++++||+ ...+.+++.+++.+|||.++++++++..||+|++|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~-~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~ 150 (185)
T TIGR02009 72 ERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS-KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLL 150 (185)
T ss_pred HHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc-hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHH
Confidence 1111 23578999999999999999999999998 5566678899999999999999999999999999998
Q ss_pred hhhh
Q 028543 198 NLIL 201 (207)
Q Consensus 198 ~~~~ 201 (207)
++.-
T Consensus 151 ~~~~ 154 (185)
T TIGR02009 151 AAEL 154 (185)
T ss_pred HHHH
Confidence 8754
No 13
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.79 E-value=1.3e-18 Score=144.02 Aligned_cols=143 Identities=16% Similarity=0.127 Sum_probs=94.4
Q ss_pred CCeEEEEcCCcccCC-C-hhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CCCC-CHHHH----HH
Q 028543 56 LPILLFDIMDTIVRD-P-FYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GRPF-DLEGL----KI 127 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~-~-~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~~~-~~~~l----~~ 127 (207)
+++||||+||||+|+ + +..++..++ +++........+.+.-.| .+..+.++.+++. +.+. ..+++ .+
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAV----TAAGLSPTPEEVQSAWMG-QSKIEAIRALLALDGADEAEAQAAFADFEE 75 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHH----HHcCCCCCHHHHHHhhcC-CCHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 478999999999993 2 333344443 111101011111121124 2445666666544 3221 11212 11
Q ss_pred HHH-----hcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcc--cccCeEEEccccCCCCCChHHHHHhh
Q 028543 128 CMK-----KGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKIS--TYLSWTFCSCVIGMFSKQCLKERGNL 199 (207)
Q Consensus 128 ~~~-----~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~--~yFD~v~~S~evg~~KPdPeiy~~~~ 199 (207)
.+. ....++||+.++|+.|+++|++++|+||+... ...+++++++. +||+.++++++++..||+|++|+.++
T Consensus 76 ~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~ 155 (220)
T TIGR03351 76 RLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAM 155 (220)
T ss_pred HHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHH
Confidence 111 12468999999999999999999999999754 55577899998 99999999999999999999999998
Q ss_pred hhhh
Q 028543 200 ILIF 203 (207)
Q Consensus 200 ~~~~ 203 (207)
...=
T Consensus 156 ~~~~ 159 (220)
T TIGR03351 156 ELTG 159 (220)
T ss_pred HHcC
Confidence 7643
No 14
>PRK11587 putative phosphatase; Provisional
Probab=99.79 E-value=1.9e-18 Score=143.65 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCcccCC--ChhchHHHHH---cCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCC-H-HHH-
Q 028543 54 RKLPILLFDIMDTIVRD--PFYHDVPAFF---GMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFD-L-EGL- 125 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~--~~~~~l~~~~---g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~-~-~~l- 125 (207)
|++++||||+||||+|+ .+..++.+++ |.+..+....+ .|. +..+.++.+... ...+ . +.+
T Consensus 1 M~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~---------~g~-~~~~~~~~~~~~-~~~~~~~~~~~ 69 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPDEVLNFI---------HGK-QAITSLRHFMAG-ASEAEIQAEFT 69 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHHHHHHHH---------cCC-CHHHHHHHHhcc-CCcHHHHHHHH
Confidence 57899999999999994 2334455544 44433322211 121 122233333221 0000 0 111
Q ss_pred -----HHHHHhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhh
Q 028543 126 -----KICMKKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNL 199 (207)
Q Consensus 126 -----~~~~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~ 199 (207)
.........++||+.++|+.|+++|++++|+||++.. ....++..++ .+|+.++++++++..||+|++|+.++
T Consensus 70 ~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~ 148 (218)
T PRK11587 70 RLEQIEATDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGA 148 (218)
T ss_pred HHHHHHHhhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHH
Confidence 1111234578999999999999999999999998743 3445677887 57899999999999999999999988
Q ss_pred hhh
Q 028543 200 ILI 202 (207)
Q Consensus 200 ~~~ 202 (207)
...
T Consensus 149 ~~~ 151 (218)
T PRK11587 149 QLL 151 (218)
T ss_pred HHc
Confidence 654
No 15
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.79 E-value=2.2e-18 Score=147.56 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=94.8
Q ss_pred CCCCeEEEEcCCcccCCC-h--hchHHHHH---cC--CHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CCCCCHH-
Q 028543 54 RKLPILLFDIMDTIVRDP-F--YHDVPAFF---GM--SMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GRPFDLE- 123 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~~-~--~~~l~~~~---g~--~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~~~~~~- 123 (207)
+++++||||+||||+|+. . ..++.+++ |. +.+++...++...|..+..- .+.......+.+. +.+.+.+
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 80 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRAL-LKMPRVAARWQAVFGRLPTEAD 80 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHH-HhcHHHHHHHHHHhCCCCCHHH
Confidence 568899999999999952 2 34565554 33 23333333332223222110 0001111111111 3222222
Q ss_pred --HHHHH--------HHhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCccccc-CeEEEccccCCCCCC
Q 028543 124 --GLKIC--------MKKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYL-SWTFCSCVIGMFSKQ 191 (207)
Q Consensus 124 --~l~~~--------~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yF-D~v~~S~evg~~KPd 191 (207)
++... +.....++||+.++|+.|+++|++++|+||++.. ...+++.+++.++| |.++++++++..||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~ 160 (267)
T PRK13478 81 VDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPY 160 (267)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCC
Confidence 12111 1233578999999999999999999999999855 44577888888885 999999999999999
Q ss_pred hHHHHHhhhhhhc
Q 028543 192 CLKERGNLILIFI 204 (207)
Q Consensus 192 Peiy~~~~~~~~~ 204 (207)
|++|+.++...-+
T Consensus 161 p~~~~~a~~~l~~ 173 (267)
T PRK13478 161 PWMALKNAIELGV 173 (267)
T ss_pred hHHHHHHHHHcCC
Confidence 9999999876543
No 16
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.79 E-value=2.2e-18 Score=142.52 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=63.8
Q ss_pred cCCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 132 GYAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 132 ~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
...++||+.++|++|+++|++++|+||++. .....++++++.+|||.++++++++..||+|++|+.++...
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~ 163 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRL 163 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHc
Confidence 457899999999999999999999999974 44556789999999999999999999999999999998653
No 17
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.78 E-value=1.8e-18 Score=138.90 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=90.9
Q ss_pred eEEEEcCCcccCCC--hhchHHHHH---cCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CCCCCHHH---HHH-
Q 028543 58 ILLFDIMDTIVRDP--FYHDVPAFF---GMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GRPFDLEG---LKI- 127 (207)
Q Consensus 58 ~IlFDLDGTLvD~~--~~~~l~~~~---g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~~~~~~~---l~~- 127 (207)
+|+||+||||+|+. +.+++.+++ |.+.. ........| .+..+.++.+++. +.+.+.+. +.+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFD--------EEFNESLKG-VSREDSLERILDLGGKKYSEEEKEELAER 71 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCC--------HHHHHHhcC-CChHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 58999999999942 223344433 32211 111112234 4445666666554 44333222 111
Q ss_pred ---HHH------hcCCcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHh
Q 028543 128 ---CMK------KGYAYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGN 198 (207)
Q Consensus 128 ---~~~------~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~ 198 (207)
.+. ....++||+.++|++|+++|++++|+||+.. ....++.+++.++||.+++|++++..||+|++|+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~ 150 (185)
T TIGR01990 72 KNDYYVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASKN-APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAA 150 (185)
T ss_pred HHHHHHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc-HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHH
Confidence 111 1236889999999999999999999999753 234678899999999999999999999999999999
Q ss_pred hhhh
Q 028543 199 LILI 202 (207)
Q Consensus 199 ~~~~ 202 (207)
+...
T Consensus 151 ~~~~ 154 (185)
T TIGR01990 151 AEGL 154 (185)
T ss_pred HHHc
Confidence 8754
No 18
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.77 E-value=3.2e-18 Score=141.64 Aligned_cols=150 Identities=19% Similarity=0.104 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCcccCCChh--chH-HHHH--cCC--HHHHHHhhCch-HHHHHHhCCCCHHHHHH--HHhh----cCCC
Q 028543 54 RKLPILLFDIMDTIVRDPFY--HDV-PAFF--GMS--MKELIECKHPN-AWIEFEMGMISEMELAR--KFFT----DGRP 119 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~~~~--~~l-~~~~--g~~--~~~~~~~~~~~-~w~~~e~G~Is~~e~~~--~~~~----~g~~ 119 (207)
+.+++|+||+||||+|.... ... ..+. +.. ........... .|..+.++....+.... .+.. ....
T Consensus 2 ~~~k~i~FD~d~TL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (229)
T COG1011 2 MMIKAILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKLIEKLEARFLRGEYTGEYGLTLERLLELLERLLGD 81 (229)
T ss_pred CceeEEEEecCCcccccchHHhHHHHHHHHHhchHHHhhhhHHHHHHHHHHHHHHcccchHHHhhhHHHHHHHHHhhccc
Confidence 56789999999999993221 111 1111 111 11111111112 57777777655533222 1111 1222
Q ss_pred CCHHHHHH---HHHhcCCcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEEEccccCCCCCChHHH
Q 028543 120 FDLEGLKI---CMKKGYAYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKE 195 (207)
Q Consensus 120 ~~~~~l~~---~~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy 195 (207)
...+.... .+.....++|++.+.|+.|+++ |+++|+||+. ......++++|+.++||.+++|+++|..||+|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f 160 (229)
T COG1011 82 EDAELVEELLAALAKLLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIF 160 (229)
T ss_pred ccHHHHHHHHHHHHhhCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHH
Confidence 22222222 2223468899999999999999 9999999976 44556779999999999999999999999999999
Q ss_pred HHhhhhhhc
Q 028543 196 RGNLILIFI 204 (207)
Q Consensus 196 ~~~~~~~~~ 204 (207)
+.++...=+
T Consensus 161 ~~~~~~~g~ 169 (229)
T COG1011 161 EYALEKLGV 169 (229)
T ss_pred HHHHHHcCC
Confidence 999986543
No 19
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.77 E-value=5.7e-18 Score=139.95 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=63.4
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
..++||+.++|++|+++|++++|+||++.. +...++.+++.+||+.++++++++..||+|++|+.++...
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~ 151 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELL 151 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHc
Confidence 468999999999999999999999999754 5567899999999999999999999999999999988653
No 20
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.77 E-value=6.5e-18 Score=140.48 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=64.0
Q ss_pred cCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 132 GYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 132 ~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
...++||+.++|+.|+++|++++|+||+... .+.+++.+++.+||+.+++|++++..||+|++|+.++...
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~ 161 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKL 161 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHc
Confidence 4578999999999999999999999998754 5557788999999999999999999999999999998754
No 21
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.77 E-value=5.2e-18 Score=136.94 Aligned_cols=137 Identities=15% Similarity=0.081 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCcccCC-C-hhchHHHHH---cCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CCCCCHHHHHH-
Q 028543 55 KLPILLFDIMDTIVRD-P-FYHDVPAFF---GMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GRPFDLEGLKI- 127 (207)
Q Consensus 55 ~~~~IlFDLDGTLvD~-~-~~~~l~~~~---g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~~~~~~~l~~- 127 (207)
++++|+||+||||+|+ + +..++.+++ |... ..... ....| .+..+.++.++.. +.+.+.+++..
T Consensus 4 ~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~-------~~~~~-~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQF-------DEQAM-VALNG-SPTWRIAQAIIELNQADLDPHALARE 74 (188)
T ss_pred cceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCC-------CHHHH-HHhcC-CCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4689999999999994 1 233344443 2211 00001 11123 2223444444432 32333333322
Q ss_pred -------HHHhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhh
Q 028543 128 -------CMKKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNL 199 (207)
Q Consensus 128 -------~~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~ 199 (207)
.......++|| .++|+.|+++ ++++|+||++.. .+..++.+++.+|||.+++|++++..||+|++|+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~ 152 (188)
T PRK10725 75 KTEAVKSMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCA 152 (188)
T ss_pred HHHHHHHHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHH
Confidence 11234467786 5899999875 999999999754 5567899999999999999999999999999999997
Q ss_pred hhh
Q 028543 200 ILI 202 (207)
Q Consensus 200 ~~~ 202 (207)
...
T Consensus 153 ~~~ 155 (188)
T PRK10725 153 QLM 155 (188)
T ss_pred HHc
Confidence 654
No 22
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.77 E-value=5.2e-18 Score=140.70 Aligned_cols=136 Identities=16% Similarity=0.202 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCcccCC-Ch-hchHHHHH---cC--CHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CCCCCHHHH
Q 028543 54 RKLPILLFDIMDTIVRD-PF-YHDVPAFF---GM--SMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GRPFDLEGL 125 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~-~~-~~~l~~~~---g~--~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~~~~~~~l 125 (207)
+++++|+||+||||+|+ +. .+++.+++ |. +.+++. ..-.| .+..+.++.+... +.+.+.+++
T Consensus 2 ~~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~---------~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 71 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVF---------KRFKG-VKLYEIIDIISKEHGVTLAKAEL 71 (221)
T ss_pred CCCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHH---------HHhcC-CCHHHHHHHHHHHhCCCCCHHHH
Confidence 46889999999999994 22 23444443 32 112211 11123 4455666666654 444444444
Q ss_pred HHHH--------HhcCCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccC-eEEEccccCCCCCChHHH
Q 028543 126 KICM--------KKGYAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLS-WTFCSCVIGMFSKQCLKE 195 (207)
Q Consensus 126 ~~~~--------~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD-~v~~S~evg~~KPdPeiy 195 (207)
...+ .....++||+.++|+.| +++++|+||++. ..+..++.+++.+||+ .++++++++..||+|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~ 148 (221)
T PRK10563 72 EPVYRAEVARLFDSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALM 148 (221)
T ss_pred HHHHHHHHHHHHHccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHH
Confidence 3222 23457899999999998 489999999974 4666789999999996 677888999999999999
Q ss_pred HHhhhhh
Q 028543 196 RGNLILI 202 (207)
Q Consensus 196 ~~~~~~~ 202 (207)
+.++...
T Consensus 149 ~~a~~~~ 155 (221)
T PRK10563 149 FHAAEAM 155 (221)
T ss_pred HHHHHHc
Confidence 9998654
No 23
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.77 E-value=4.6e-18 Score=139.61 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=63.5
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
..++||+.++|+.|+++|++++|+||++. ....+++++++.+|||.++++++++..||+|++|+.++...
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~ 154 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERL 154 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHc
Confidence 56899999999999999999999999875 45567899999999999999999999999999999998754
No 24
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.75 E-value=7.5e-18 Score=151.44 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCcccCC-C-hhc-hHHHHH---cCC--HHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCC-CCHHHH
Q 028543 55 KLPILLFDIMDTIVRD-P-FYH-DVPAFF---GMS--MKELIECKHPNAWIEFEMGMISEMELARKFFTDGRP-FDLEGL 125 (207)
Q Consensus 55 ~~~~IlFDLDGTLvD~-~-~~~-~l~~~~---g~~--~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~-~~~~~l 125 (207)
..++|||||||||+|+ + .+. ++.+++ |.. .++... .-.| .+..+.++.++....+ ...+++
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~---------~~~G-~~~~~~l~~ll~~~~~~~~~e~l 199 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILR---------RVEG-MKNEQAISEVLCWSRDPAELRRM 199 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHH---------HhcC-CCHHHHHHHHhhccCCHHHHHHH
Confidence 6689999999999994 3 333 455543 321 121111 1123 2333444444321111 111112
Q ss_pred ----HHHH----HhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHH
Q 028543 126 ----KICM----KKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKER 196 (207)
Q Consensus 126 ----~~~~----~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~ 196 (207)
.+.+ .....++||+.++|+.|+++|++++|+||++.. .+.+++++++.+|||.++++++++..||+|++|+
T Consensus 200 ~~~~~~~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl 279 (381)
T PLN02575 200 ATRKEEIYQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFI 279 (381)
T ss_pred HHHHHHHHHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHH
Confidence 1111 123468999999999999999999999999854 5567899999999999999999999999999999
Q ss_pred Hhhhhhhc
Q 028543 197 GNLILIFI 204 (207)
Q Consensus 197 ~~~~~~~~ 204 (207)
.++..+-+
T Consensus 280 ~A~~~lgl 287 (381)
T PLN02575 280 YAAQLLNF 287 (381)
T ss_pred HHHHHcCC
Confidence 99887543
No 25
>PLN02940 riboflavin kinase
Probab=99.75 E-value=1.1e-17 Score=150.79 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=95.1
Q ss_pred ccCCCCCeEEEEcCCcccCC--ChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CCCCCHHHHHH
Q 028543 51 NEKRKLPILLFDIMDTIVRD--PFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GRPFDLEGLKI 127 (207)
Q Consensus 51 ~~~~~~~~IlFDLDGTLvD~--~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~~~~~~~l~~ 127 (207)
..+-++++||||+||||+|+ .+.+++..++ +++..........+ -.|. +..+.++.+++. +.+.+.+++..
T Consensus 6 ~~~~~ik~VIFDlDGTLvDt~~~~~~a~~~~~----~~~G~~~~~~~~~~-~~G~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (382)
T PLN02940 6 PLKKLVSHVILDLDGTLLNTDGIVSDVLKAFL----VKYGKQWDGREAQK-IVGK-TPLEAAATVVEDYGLPCSTDEFNS 79 (382)
T ss_pred cccccCCEEEECCcCcCCcCHHHHHHHHHHHH----HHcCCCCCHHHHHH-hcCC-CHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34456899999999999994 2233344333 11110000111111 1232 333445555443 43433333321
Q ss_pred H----H---HhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHH-hCCcccccCeEEEccccCCCCCChHHHHHh
Q 028543 128 C----M---KKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIED-KLKISTYLSWTFCSCVIGMFSKQCLKERGN 198 (207)
Q Consensus 128 ~----~---~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~-~~~l~~yFD~v~~S~evg~~KPdPeiy~~~ 198 (207)
. + .....++||+.++|+.|+++|++++|+||++.. +...++ ..++.+|||.++++++++..||+|++|+.+
T Consensus 80 ~~~~~~~~~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a 159 (382)
T PLN02940 80 EITPLLSEQWCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEA 159 (382)
T ss_pred HHHHHHHHHHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHH
Confidence 1 1 123568999999999999999999999999754 444555 789999999999999999999999999999
Q ss_pred hhhh
Q 028543 199 LILI 202 (207)
Q Consensus 199 ~~~~ 202 (207)
+...
T Consensus 160 ~~~l 163 (382)
T PLN02940 160 AKRL 163 (382)
T ss_pred HHHc
Confidence 8754
No 26
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.75 E-value=1.3e-17 Score=139.85 Aligned_cols=71 Identities=18% Similarity=0.094 Sum_probs=63.2
Q ss_pred cCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 132 GYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 132 ~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
...++||+.++|++|+++|++++|+||++.. ...+++++++.++|+.++++++++..||+|++|+.++...
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l 164 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERI 164 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999999999755 4447789999999999999999999999999999998754
No 27
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.73 E-value=1.6e-17 Score=140.40 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=105.5
Q ss_pred CCCCeEEEEcCCcccC--CChhc---hHHHHHcCC--HHHHHHhhCc--------hHHHHHHhCCCCHHHHHHHHhhc-C
Q 028543 54 RKLPILLFDIMDTIVR--DPFYH---DVPAFFGMS--MKELIECKHP--------NAWIEFEMGMISEMELARKFFTD-G 117 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD--~~~~~---~l~~~~g~~--~~~~~~~~~~--------~~w~~~e~G~Is~~e~~~~~~~~-g 117 (207)
+++++|+||++|||+. .+.-+ .+.+.+|+. .++....... ........|.++..+++..++.. .
T Consensus 5 ~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~f 84 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVESTF 84 (237)
T ss_pred cceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHHh
Confidence 6788999999999997 22222 255556764 2222111110 11223456778888998876654 1
Q ss_pred CCC---CHHHHHH----H-HHh----cCCcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEcccc
Q 028543 118 RPF---DLEGLKI----C-MKK----GYAYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCVI 185 (207)
Q Consensus 118 ~~~---~~~~l~~----~-~~~----~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~ev 185 (207)
... ..++... . +.. .+.+.+++.++|+.||++|+.|+++||...+.+.++..+++..|||+++.||++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~e~ 164 (237)
T KOG3085|consen 85 GKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLRLLLLPLGLSAYFDFVVESCEV 164 (237)
T ss_pred ccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHHHHhhccCHHHhhhhhhhhhhh
Confidence 111 1222221 1 111 345678999999999999999999999988888888999999999999999999
Q ss_pred CCCCCChHHHHHhhhhh
Q 028543 186 GMFSKQCLKERGNLILI 202 (207)
Q Consensus 186 g~~KPdPeiy~~~~~~~ 202 (207)
|..||||+||+-||+.+
T Consensus 165 g~~KPDp~If~~al~~l 181 (237)
T KOG3085|consen 165 GLEKPDPRIFQLALERL 181 (237)
T ss_pred ccCCCChHHHHHHHHHh
Confidence 99999999999999875
No 28
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.72 E-value=9.6e-17 Score=134.08 Aligned_cols=70 Identities=21% Similarity=0.187 Sum_probs=62.9
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
..++||+.++|.+|+++||+++|+||+++. .+.+++++|+.+||+.++++++....||+|+.+..++.-.
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~ 158 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKL 158 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHh
Confidence 468999999999999999999999999855 5567899999999999999899999999999998877543
No 29
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.72 E-value=1.1e-16 Score=132.32 Aligned_cols=70 Identities=20% Similarity=0.130 Sum_probs=63.2
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
..++||+.++|+.|+++|++++|+||+... ...+++.+++.++|+.++++++++..||+|++|+.++...
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 162 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKL 162 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHc
Confidence 568999999999999999999999999754 5567788999999999999999999999999999988754
No 30
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.71 E-value=1.1e-16 Score=131.05 Aligned_cols=66 Identities=12% Similarity=-0.086 Sum_probs=58.3
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
.+++.++|+.|+++|++++|+||++.. ...+++.+|+.+|||.++++++++. ||+|++|..++.-.
T Consensus 108 ~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~ 174 (197)
T TIGR01548 108 LLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKAL 174 (197)
T ss_pred ccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHh
Confidence 445699999999999999999999854 5567899999999999999999987 99999999988754
No 31
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.70 E-value=1.3e-16 Score=124.90 Aligned_cols=135 Identities=19% Similarity=0.165 Sum_probs=91.4
Q ss_pred EEEEcCCcccCCCh--hchHHHHHcCCHHHHHHhhCc-hHHHHH-HhCCCCHHHHHHHHhhc-CCCCCHHHHHH----H-
Q 028543 59 LLFDIMDTIVRDPF--YHDVPAFFGMSMKELIECKHP-NAWIEF-EMGMISEMELARKFFTD-GRPFDLEGLKI----C- 128 (207)
Q Consensus 59 IlFDLDGTLvD~~~--~~~l~~~~g~~~~~~~~~~~~-~~w~~~-e~G~Is~~e~~~~~~~~-g~~~~~~~l~~----~- 128 (207)
|+||+||||+|... .+.+...+ .+..+. ..+.++ +.+..+..+.++.+++. +.. ..++.+ .
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 71 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLA-------LEEFGLEISAEELRELFGKSYEEALERLLERFGID--PEEIQELFREYN 71 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHH-------HHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred cEEECCCCcEeCHHHHHHHHHHHH-------HHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh--HHHHHHHhhhhh
Confidence 79999999999322 22233221 111111 011111 12334455666666543 211 222222 1
Q ss_pred HHhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 129 MKKGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 129 ~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
......++||+.++|+.|+++|++++++||++.. ....++.+++.++||.+++|++.+..||+|++|+.++.-+
T Consensus 72 ~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~ 146 (176)
T PF13419_consen 72 LESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKL 146 (176)
T ss_dssp HHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHH
T ss_pred hhhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHc
Confidence 2345678999999999999999999999999754 5567899999999999999999999999999999998755
No 32
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.69 E-value=9.9e-17 Score=128.06 Aligned_cols=70 Identities=20% Similarity=0.136 Sum_probs=61.7
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
..++||+.++|+.|+++|++++|+||++........++++.++||.+++|++++..||+|++|+.++...
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~ 153 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDHAVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKL 153 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHc
Confidence 5788999999999999999999999997544445556999999999999999999999999999987653
No 33
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.69 E-value=2e-16 Score=133.55 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=58.4
Q ss_pred cCCcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 132 GYAYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 132 ~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
...++||+.++|++|+++ ++++|+||++.. ++.+|+.+|||.+++|++++..||+|++|+.++...
T Consensus 111 ~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~ 176 (238)
T PRK10748 111 RIDVPQATHDTLKQLAKK-WPLVAITNGNAQ----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKL 176 (238)
T ss_pred cCCCCccHHHHHHHHHcC-CCEEEEECCCch----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHc
Confidence 357889999999999975 999999998754 267899999999999999999999999999988654
No 34
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.69 E-value=1.4e-16 Score=130.79 Aligned_cols=72 Identities=18% Similarity=0.034 Sum_probs=64.2
Q ss_pred cCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhhh
Q 028543 132 GYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILIF 203 (207)
Q Consensus 132 ~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~~ 203 (207)
...++||+.++|++|+++|++++|+||+... ....++.+++.++||.++++++++..||+|++|+.++...-
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~ 145 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLD 145 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcC
Confidence 4578999999999999999999999998744 55577999999999999999999999999999999987543
No 35
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.68 E-value=1.8e-16 Score=126.63 Aligned_cols=64 Identities=8% Similarity=0.154 Sum_probs=55.7
Q ss_pred cCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 132 GYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 132 ~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
...++||+.++|+ +++|+||++.. ....++++++.+|||.++++++++..||+|++|+.++...
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~ 152 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTV 152 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4568999999998 48999999855 4457799999999999999999999999999999998754
No 36
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.68 E-value=5.9e-16 Score=133.49 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=62.7
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
..++||+.++|+.|+++|++++|+||++.. .+.+++++++..||+.++++++++..||+|++|+.++...
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~ 170 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMA 170 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHh
Confidence 357899999999999999999999998754 5567788999999999999999999999999999988653
No 37
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.67 E-value=9.2e-16 Score=123.94 Aligned_cols=67 Identities=16% Similarity=-0.008 Sum_probs=58.8
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCC----CCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGM----FSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~----~KPdPeiy~~~~~~~ 202 (207)
..++||+.++|++|+ ++++|+||++. .....++.+|+.+|||.++++++++. .||+|++|+.++..+
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~ 154 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREA 154 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHh
Confidence 468899999999997 58999999975 45567899999999999999999998 599999999998764
No 38
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.67 E-value=5.6e-16 Score=142.52 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=91.7
Q ss_pred cccCCCCCeEEEEcCCcccCC-C-hhchHHHHHcCCHHHHHH-----hhCc-hHHHHHHhCCCCHHHHHHHHhhc-CCCC
Q 028543 50 ENEKRKLPILLFDIMDTIVRD-P-FYHDVPAFFGMSMKELIE-----CKHP-NAWIEFEMGMISEMELARKFFTD-GRPF 120 (207)
Q Consensus 50 ~~~~~~~~~IlFDLDGTLvD~-~-~~~~l~~~~g~~~~~~~~-----~~~~-~~w~~~e~G~Is~~e~~~~~~~~-g~~~ 120 (207)
++.++.+++|||||||||+|+ + +..++.+++ +++.. .... ....+ ..| .+..+.++.++.. +.+.
T Consensus 235 ~~~~~m~k~vIFDlDGTLiDs~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~~~-~~G-~~~~~~~~~l~~~~~~~~ 308 (459)
T PRK06698 235 KGENEMLQALIFDMDGTLFQTDKILELSLDDTF----DHLRSLQLWDTVTPIDKYRE-IMG-VPLPKVWEALLPDHSLEI 308 (459)
T ss_pred cchHHhhhheeEccCCceecchhHHHHHHHHHH----HHHhhhcccCCCCCHHHHHH-HcC-CChHHHHHHHhhhcchhH
Confidence 344455789999999999994 2 233355444 22210 0000 11111 134 2334555555432 2111
Q ss_pred CHHHH----HHHHH-----hcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCC
Q 028543 121 DLEGL----KICMK-----KGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSK 190 (207)
Q Consensus 121 ~~~~l----~~~~~-----~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KP 190 (207)
.++. .+.+. ....++||+.++|++|+++|++++|+||++.. ....++.+++.+|||.+++++++. .||
T Consensus 309 -~~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~-~~~ 386 (459)
T PRK06698 309 -REQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQIN-SLN 386 (459)
T ss_pred -HHHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCC-CCC
Confidence 1111 11111 23478999999999999999999999999854 556789999999999999999884 478
Q ss_pred ChHHHHHhhhh
Q 028543 191 QCLKERGNLIL 201 (207)
Q Consensus 191 dPeiy~~~~~~ 201 (207)
+|++|+.++.-
T Consensus 387 kP~~~~~al~~ 397 (459)
T PRK06698 387 KSDLVKSILNK 397 (459)
T ss_pred CcHHHHHHHHh
Confidence 88999988853
No 39
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.66 E-value=1.8e-15 Score=131.41 Aligned_cols=70 Identities=10% Similarity=-0.098 Sum_probs=55.9
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccC--eEEEccccCCCCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLS--WTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD--~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
..++||+.++|+.|+++|++++|+||++.. ...+++.+....+|+ .++++++++..||+|++|..++...
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~ 215 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETL 215 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHh
Confidence 478999999999999999999999998754 445666653334444 2448999999999999999998764
No 40
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.63 E-value=1.8e-15 Score=118.46 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=58.7
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
..++||+.++|+.|+++|++++|+||++.. ....++.+ +.++|+.++++++++ .||+|++|+.++...
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~ 131 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESL 131 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHc
Confidence 356799999999999999999999999754 44456666 889999999999999 999999999998754
No 41
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.62 E-value=2.5e-15 Score=150.27 Aligned_cols=140 Identities=12% Similarity=0.119 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCcccCC-Ch-hchHHHHH---cCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc-CC-CCCHHH--
Q 028543 54 RKLPILLFDIMDTIVRD-PF-YHDVPAFF---GMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD-GR-PFDLEG-- 124 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~-~~-~~~l~~~~---g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~-g~-~~~~~~-- 124 (207)
+++++|||||||||+|+ +. ..++.+++ |.+. ....+..+ .| .+..++++.+... +. ..+.++
T Consensus 73 ~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~i-------t~e~~~~~-~G-~~~~~~~~~~~~~~~l~~~~~~~~~ 143 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV-------TVEDFVPF-MG-TGEANFLGGVASVKGVKGFDPDAAK 143 (1057)
T ss_pred CCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCC-------CHHHHHHH-hC-CCHHHHHHHHHHhcCCCCCCHHHHH
Confidence 58899999999999994 22 33455554 3221 11112111 23 2334444443322 21 112222
Q ss_pred --HHHHHHh------cCCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcc-cccCeEEEccccCCCCCChHH
Q 028543 125 --LKICMKK------GYAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKIS-TYLSWTFCSCVIGMFSKQCLK 194 (207)
Q Consensus 125 --l~~~~~~------~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~-~yFD~v~~S~evg~~KPdPei 194 (207)
+.+.+.+ ...++||+.++|++|+++|++++|+||+.. .....++++++. .|||.++++++++..||+|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~ 223 (1057)
T PLN02919 144 KRFFEIYLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDI 223 (1057)
T ss_pred HHHHHHHHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHH
Confidence 1111111 123689999999999999999999999974 455577899995 799999999999999999999
Q ss_pred HHHhhhhh
Q 028543 195 ERGNLILI 202 (207)
Q Consensus 195 y~~~~~~~ 202 (207)
|+.++...
T Consensus 224 ~~~a~~~l 231 (1057)
T PLN02919 224 FLAAAKIL 231 (1057)
T ss_pred HHHHHHHc
Confidence 99998754
No 42
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.59 E-value=5.4e-14 Score=116.27 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCcccCCChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcC
Q 028543 54 RKLPILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGY 133 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~ 133 (207)
+++++++||+||||+|......+.+.+|.... . ...+.++..|.++..+..+..+..-...+.+.+ ..+....
T Consensus 12 ~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~-~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (219)
T TIGR00338 12 RSKKLVVFDMDSTLINAETIDEIAKIAGVEEE-V-----SEITERAMRGELDFKASLRERVALLKGLPVELL-KEVRENL 84 (219)
T ss_pred ccCCEEEEeCcccCCCchHHHHHHHHhCCHHH-H-----HHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHH-HHHHhcC
Confidence 55689999999999995322233333443211 1 123455667888887777655543111223333 3334456
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEE-------Ec---cccCCCCCChHHHHHhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTF-------CS---CVIGMFSKQCLKERGNLIL 201 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~-------~S---~evg~~KPdPeiy~~~~~~ 201 (207)
.++||+.++|+.|+++|++++|+||+... ...+++.+++..+|+..+ .+ ......+|+|++|+.++..
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 163 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRK 163 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHH
Confidence 78999999999999999999999999755 445778899998886432 22 2233457889999987654
No 43
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.56 E-value=8.4e-14 Score=112.97 Aligned_cols=130 Identities=17% Similarity=0.064 Sum_probs=88.4
Q ss_pred CCeEEEEcCCcccCCC-hhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc--C--CCCCHHHHHHHHH
Q 028543 56 LPILLFDIMDTIVRDP-FYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD--G--RPFDLEGLKICMK 130 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~~-~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~--g--~~~~~~~l~~~~~ 130 (207)
+++|+||+||||+|.. ....+...+|...... ..+..+..|.++..++.+..++. + .....+.+... .
T Consensus 4 ~k~viFD~DGTLid~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 76 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMSSWEYLHRRLETCGLAK------KNAELFFSGRISYEEWARLDASLWKRRSGRLRREEVEEI-F 76 (201)
T ss_pred ceEEEEeCCCCCcCCccHHHHHHHHhCchHHHH------HHHHHHHcCCCCHHHHHHHHHHHHhhcccCCCHHHHHHH-H
Confidence 5789999999999932 2222333344321110 11234567888887776543221 1 12233344443 3
Q ss_pred hcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCCh
Q 028543 131 KGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQC 192 (207)
Q Consensus 131 ~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdP 192 (207)
....++||+.++|+.|+++|++++|+||+... .+.+++++|+..+|+..+.+++.|..||++
T Consensus 77 ~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~ 139 (201)
T TIGR01491 77 KEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDG 139 (201)
T ss_pred HhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecce
Confidence 44678999999999999999999999999855 555778999999999888888888888775
No 44
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.54 E-value=4.5e-14 Score=115.21 Aligned_cols=130 Identities=11% Similarity=0.142 Sum_probs=76.6
Q ss_pred CCeEEEEcCCcccCCChhchHHHHH---cCCHHHHHHhhCchHHHHH--HhCCCCHHHHHHHHhhcCCCCCHHHHH-HHH
Q 028543 56 LPILLFDIMDTIVRDPFYHDVPAFF---GMSMKELIECKHPNAWIEF--EMGMISEMELARKFFTDGRPFDLEGLK-ICM 129 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~~~~~~l~~~~---g~~~~~~~~~~~~~~w~~~--e~G~Is~~e~~~~~~~~g~~~~~~~l~-~~~ 129 (207)
+++||||+||||+| +..++..++ |.+.+++...+........ ..| .+.++. ..+++. +. ..+
T Consensus 2 ~k~viFDlDGTLiD--~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~-~~~~~~--------~~~~~~ 69 (197)
T PHA02597 2 KPTILTDVDGVLLS--WQSGLPYFAQKYNIPTDHILKMIQDERFRDPGELFG-CDQELA-KKLIEK--------YNNSDF 69 (197)
T ss_pred CcEEEEecCCceEc--hhhccHHHHHhcCCCHHHHHHHHhHhhhcCHHHHhc-ccHHHH-HHHhhh--------hhHHHH
Confidence 57999999999999 333343333 5555544433222111110 011 111111 111110 01 122
Q ss_pred HhcCCcchhHHHHHHHHhHCCCeEEEEcCcHHHHHH-HHHhCCccc----ccCeEEEccccCCCCCChHHHHHhhhh
Q 028543 130 KKGYAYLDGVEELLHELKQSNYEMHAFTNYPIWYEI-IEDKLKIST----YLSWTFCSCVIGMFSKQCLKERGNLIL 201 (207)
Q Consensus 130 ~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~-il~~~~l~~----yFD~v~~S~evg~~KPdPeiy~~~~~~ 201 (207)
.....++||+.++|++|+++ ++++++||++...+. .++.+++.. +|+.++++++ .||+|++|+.++..
T Consensus 70 ~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~ 142 (197)
T PHA02597 70 IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEK 142 (197)
T ss_pred HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHH
Confidence 33456899999999999987 678999998744343 456677765 4566777666 37789999998864
No 45
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.53 E-value=2.1e-13 Score=117.90 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=55.6
Q ss_pred cCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 132 GYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 132 ~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
...++||+.++|+.|+++|++++|+||+... ....++++|+.+||+.+++++++. |.|++|+.++...
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~---~k~~~~~~~l~~~ 208 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPIL---SKRRALSQLVARE 208 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCC---CCHHHHHHHHHHh
Confidence 3467999999999999999999999999755 555789999999999988776653 4468888877643
No 46
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.52 E-value=9.8e-14 Score=116.63 Aligned_cols=140 Identities=17% Similarity=0.120 Sum_probs=96.4
Q ss_pred CCCCeEEEEcCCcccCCC-h-hchHHHHHcCCHHHHHHhhCc-hHHH--HHHhCCCCHHHHHHHHhhc-CCCCCHHHHHH
Q 028543 54 RKLPILLFDIMDTIVRDP-F-YHDVPAFFGMSMKELIECKHP-NAWI--EFEMGMISEMELARKFFTD-GRPFDLEGLKI 127 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~~-~-~~~l~~~~g~~~~~~~~~~~~-~~w~--~~e~G~Is~~e~~~~~~~~-g~~~~~~~l~~ 127 (207)
.+..+++||+||||+|+. . .+.+...+ ..++. -.|. ..-.|.-+ .|..+.++.. ..+.+.+++..
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~--------~~ygk~~~~~~~~~~mG~~~-~eaa~~~~~~~~dp~s~ee~~~ 78 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELL--------DRYGKPYPWDVKVKSMGKRT-SEAARLFVKKLPDPVSREEFNK 78 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHH--------HHcCCCChHHHHHHHcCCCH-HHHHHHHHhhcCCCCCHHHHHH
Confidence 456699999999999942 2 22233333 22221 1122 23446444 4777777643 45566666643
Q ss_pred HH-------HhcCCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhC-CcccccCeEEE--ccccCCCCCChHHHH
Q 028543 128 CM-------KKGYAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKL-KISTYLSWTFC--SCVIGMFSKQCLKER 196 (207)
Q Consensus 128 ~~-------~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~-~l~~yFD~v~~--S~evg~~KPdPeiy~ 196 (207)
.. .....++||+.++++.|+.+|++++++||.++ .+....+.+ ++...|++++. ..++...||+|++|+
T Consensus 79 e~~~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l 158 (222)
T KOG2914|consen 79 EEEEILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYL 158 (222)
T ss_pred HHHHHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHH
Confidence 32 23356789999999999999999999999864 344433444 48888999999 889999999999999
Q ss_pred Hhhhhh
Q 028543 197 GNLILI 202 (207)
Q Consensus 197 ~~~~~~ 202 (207)
.|..++
T Consensus 159 ~A~~~l 164 (222)
T KOG2914|consen 159 KAAKRL 164 (222)
T ss_pred HHHHhc
Confidence 998765
No 47
>PLN02954 phosphoserine phosphatase
Probab=99.51 E-value=5.6e-13 Score=110.58 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCcccCCChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhc-
Q 028543 54 RKLPILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKG- 132 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~- 132 (207)
+++++|+||+||||+|+.....+.+.+|... +.. ....++..|.++..+.++..+..- ....+.+...+...
T Consensus 10 ~~~k~viFDfDGTL~~~~~~~~~~~~~g~~~-~~~-----~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 82 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEGIDELAEFCGAGE-AVA-----EWTAKAMGGSVPFEEALAARLSLF-KPSLSQVEEFLEKRP 82 (224)
T ss_pred ccCCEEEEeCCCcccchHHHHHHHHHcCChH-HHH-----HHHHHHHCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHcc
Confidence 5578999999999999533222333344321 111 113345568888777776655431 12345555554432
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcc--cccCeE--------EEccc----cCCCCCChHHHHH
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKIS--TYLSWT--------FCSCV----IGMFSKQCLKERG 197 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~--~yFD~v--------~~S~e----vg~~KPdPeiy~~ 197 (207)
..++||+.++|+.|+++|++++|+||+... .+.+++.+|+. ++|+.. +.+.+ ....+|+|++++.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 468899999999999999999999999855 55577888886 466431 12221 1235677888887
Q ss_pred hhh
Q 028543 198 NLI 200 (207)
Q Consensus 198 ~~~ 200 (207)
++.
T Consensus 163 ~~~ 165 (224)
T PLN02954 163 IKK 165 (224)
T ss_pred HHH
Confidence 654
No 48
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.46 E-value=6.7e-13 Score=110.51 Aligned_cols=130 Identities=13% Similarity=0.010 Sum_probs=87.5
Q ss_pred CeEEEEcCCcccCCChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCCcc
Q 028543 57 PILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYAYL 136 (207)
Q Consensus 57 ~~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~~~ 136 (207)
.+|+||+||||++......+.+-++. ... .....++..|+++-.+..+..++.-.....+++.+.+.....++
T Consensus 4 ~~vifDfDgTi~~~d~~~~~~~~~~~--~~~-----~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 76 (219)
T PRK09552 4 IQIFCDFDGTITNNDNIIAIMKKFAP--PEW-----EELKDDILSQELSIQEGVGQMFQLLPSNLKEEIIQFLLETAEIR 76 (219)
T ss_pred cEEEEcCCCCCCcchhhHHHHHHhCH--HHH-----HHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHHHHHHhCCCcC
Confidence 38999999999994221121111211 111 11233455699988888888776521222355666666667899
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCccc--cc--CeEEEccccCCCCCChHH
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKIST--YL--SWTFCSCVIGMFSKQCLK 194 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~--yF--D~v~~S~evg~~KPdPei 194 (207)
||+.++|+.|+++|++++|+||+... ++.+++++ +.. ++ +..+.++.+...||+|++
T Consensus 77 pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~ 138 (219)
T PRK09552 77 EGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCD 138 (219)
T ss_pred cCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCcc
Confidence 99999999999999999999999854 55577776 533 33 555677778888999875
No 49
>PLN02811 hydrolase
Probab=99.45 E-value=5e-13 Score=111.25 Aligned_cols=71 Identities=7% Similarity=-0.008 Sum_probs=60.5
Q ss_pred cCCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHH-HHHhCCcccccCeEEEcc--ccCCCCCChHHHHHhhhhh
Q 028543 132 GYAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEI-IEDKLKISTYLSWTFCSC--VIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 132 ~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~-il~~~~l~~yFD~v~~S~--evg~~KPdPeiy~~~~~~~ 202 (207)
...++||+.++|+.|+++|++++|+||+.. .... ..+..++.++|+.+++++ +++..||+|++|+.++...
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~ 150 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRF 150 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHh
Confidence 457889999999999999999999999864 3433 334457889999999999 8999999999999998764
No 50
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.42 E-value=4.4e-12 Score=101.65 Aligned_cols=118 Identities=11% Similarity=0.093 Sum_probs=73.8
Q ss_pred eEEEEcCCcccCCChhchHHHHHcCC-HHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCCcc
Q 028543 58 ILLFDIMDTIVRDPFYHDVPAFFGMS-MKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYAYL 136 (207)
Q Consensus 58 ~IlFDLDGTLvD~~~~~~l~~~~g~~-~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~~~ 136 (207)
+|+||+||||+|......+.+.++.. .+++... |.. ..+..+..+.+...+.. ...+.+.+.....+ ..++
T Consensus 3 ~iiFD~dgTL~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~ 74 (188)
T TIGR01489 3 VVVSDFDGTITLNDSDDWITDKFGPPEANRLLDG-----VLS-KTLSIKFMDRRMKGLLP-SGLKEDEILEVLKS-APID 74 (188)
T ss_pred EEEEeCCCcccCCCchHHHHHhcCcchhhHHHHH-----Hhh-cCCchHHHHHHHHHHhh-cCCCHHHHHHHHHh-CCCC
Confidence 68999999999954433344444321 1222211 211 00122223333333322 12334455554443 5889
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEcc
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSC 183 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~ 183 (207)
||+.++|+.|+++|++++|+||+... ++.+++++++.++|+.+++++
T Consensus 75 ~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~ 122 (188)
T TIGR01489 75 PGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNP 122 (188)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccC
Confidence 99999999999999999999999754 555778899999999999643
No 51
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.35 E-value=8.8e-12 Score=105.93 Aligned_cols=65 Identities=8% Similarity=-0.003 Sum_probs=55.0
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCc----HHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNY----PIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGN 198 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~----~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~ 198 (207)
.+.+++.++|++|+++|++++++||+ ++. ...+++++|+.++|+.++++++.+..||+|+.+...
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~ 183 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQD 183 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHh
Confidence 46678999999999999999999997 433 444678899999999999999999999999865543
No 52
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.32 E-value=1.3e-11 Score=102.54 Aligned_cols=129 Identities=10% Similarity=-0.027 Sum_probs=84.6
Q ss_pred EEEEcCCcccCCCh-hchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCCcch
Q 028543 59 LLFDIMDTIVRDPF-YHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYAYLD 137 (207)
Q Consensus 59 IlFDLDGTLvD~~~-~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~~~p 137 (207)
|+||+||||.+.+. ..-+.. ++. +.+. ....++..|.++..+.+++.++.-.....+++.+.+.....++|
T Consensus 2 ~~fDFDgTit~~d~~~~~~~~-~~~--~~~~-----~~~~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 73 (214)
T TIGR03333 2 IICDFDGTITNNDNIISIMKQ-FAP--PEWE-----ALKDGVLSKTLSIQEGVGRMFGLLPSSLKEEITSFVLETAEIRE 73 (214)
T ss_pred EEeccCCCCCcchhHHHHHHH-hCc--HHHH-----HHHHHHHcCCccHHHHHHHHHhhCCCchHHHHHHHHHhcCcccc
Confidence 79999999998322 111221 111 1111 11224456888887888777754111123455555445578999
Q ss_pred hHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCccccc---CeEEEccccCCCCCChHHH
Q 028543 138 GVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYL---SWTFCSCVIGMFSKQCLKE 195 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yF---D~v~~S~evg~~KPdPeiy 195 (207)
|+.++|+.|+++|++++|+||+... ++.+++.++...++ +.++.++.+...||+|+++
T Consensus 74 g~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~ 135 (214)
T TIGR03333 74 GFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDG 135 (214)
T ss_pred cHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCcc
Confidence 9999999999999999999999854 55566776444444 4566677778889999876
No 53
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.30 E-value=6e-12 Score=98.87 Aligned_cols=69 Identities=12% Similarity=-0.043 Sum_probs=51.8
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH----------------HHHHHHHhCCccc---ccCeEEEccccCCCCCChHH
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI----------------WYEIIEDKLKIST---YLSWTFCSCVIGMFSKQCLK 194 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~----------------~~~~il~~~~l~~---yFD~v~~S~evg~~KPdPei 194 (207)
.++||+.++|+.|+++||+++|+||++. .....++.+++.. |+..+..+++.+..||+|++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 4789999999999999999999999762 2333557788741 22222235677889999999
Q ss_pred HHHhhhhh
Q 028543 195 ERGNLILI 202 (207)
Q Consensus 195 y~~~~~~~ 202 (207)
|+.++...
T Consensus 107 ~~~~~~~~ 114 (147)
T TIGR01656 107 ILEALKRL 114 (147)
T ss_pred HHHHHHHc
Confidence 99998753
No 54
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.29 E-value=6.3e-11 Score=104.87 Aligned_cols=141 Identities=11% Similarity=0.096 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCcccCCChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcC
Q 028543 54 RKLPILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGY 133 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~ 133 (207)
++++.|+|||||||+.......+.+.+|...+.. .......+|+++..+.+++.+..-...+ +...+.+.+..
T Consensus 108 ~~~~LvvfDmDGTLI~~e~i~eia~~~g~~~~v~------~it~~~m~Geldf~esl~~rv~~l~g~~-~~il~~v~~~l 180 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQIECIDEIAKLAGTGEEVA------EVTERAMRGELDFEASLRQRVATLKGAD-ANILQQVRENL 180 (322)
T ss_pred cCCCEEEEECCCCCcchHHHHHHHHHhCCchHHH------HHHHHHHcCCcCHHHHHHHHHHHhCCCC-HHHHHHHHHhC
Confidence 6779999999999996322222333444432211 1122345688888776665443211111 22223334557
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHHH-HHHHhCCccccc-------CeEEEcc---ccCCCCCChHHHHHhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWYE-IIEDKLKISTYL-------SWTFCSC---VIGMFSKQCLKERGNLIL 201 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~-~il~~~~l~~yF-------D~v~~S~---evg~~KPdPeiy~~~~~~ 201 (207)
.++||+.++|+.|++.|++++|+||+...+. .+++++++...+ |..+++. ++...||+|++++.++.-
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~ 259 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQE 259 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHH
Confidence 7999999999999999999999999986544 466778876544 2333333 233578999999987653
No 55
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.29 E-value=2.8e-12 Score=104.19 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=59.2
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCc-HH-HHHHHHHhCCcc---------cccCeEEEccccCCCCCChHHHHHhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNY-PI-WYEIIEDKLKIS---------TYLSWTFCSCVIGMFSKQCLKERGNL 199 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~-~~-~~~~il~~~~l~---------~yFD~v~~S~evg~~KPdPeiy~~~~ 199 (207)
..++||+.++|+.|+++|++++|+||+ .. ..+.+++.+++. +|||.++++++.+..||+|++++.+.
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~ 121 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVN 121 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhh
Confidence 368899999999999999999999987 64 455677899998 99999999999999999999988764
No 56
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.26 E-value=3e-11 Score=97.78 Aligned_cols=67 Identities=13% Similarity=-0.092 Sum_probs=53.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH----------------HHHHHHHhCCcccccCeEEEc-----cccCCCCCCh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI----------------WYEIIEDKLKISTYLSWTFCS-----CVIGMFSKQC 192 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~----------------~~~~il~~~~l~~yFD~v~~S-----~evg~~KPdP 192 (207)
.++||+.++|++|+++|++++|+||++. ++...++++++ +|+.++.+ ++++..||+|
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~~~~~~~~~KP~p 106 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHHPEDGCDCRKPKP 106 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcCCCCCH
Confidence 5789999999999999999999999852 22334566676 48888765 4578899999
Q ss_pred HHHHHhhhhh
Q 028543 193 LKERGNLILI 202 (207)
Q Consensus 193 eiy~~~~~~~ 202 (207)
++|+.++...
T Consensus 107 ~~~~~~~~~l 116 (181)
T PRK08942 107 GMLLSIAERL 116 (181)
T ss_pred HHHHHHHHHc
Confidence 9999998654
No 57
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.26 E-value=1.7e-11 Score=94.51 Aligned_cols=66 Identities=6% Similarity=0.028 Sum_probs=55.6
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCc-HHHHH-HHHHhCC-------cccccCeEEEccccCCCCCChHHHHHhhhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNY-PIWYE-IIEDKLK-------ISTYLSWTFCSCVIGMFSKQCLKERGNLILIF 203 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~-~~~~~-~il~~~~-------l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~~ 203 (207)
.++||+.++|++|+++|++++|+||+ +.... .+++..+ +.+||+.++++++ ||+|++|+.++...-
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg 103 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLN 103 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhc
Confidence 47899999999999999999999999 55444 4667777 8999999998864 599999999987653
No 58
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.25 E-value=1.7e-11 Score=98.66 Aligned_cols=67 Identities=16% Similarity=0.012 Sum_probs=55.5
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH-------------HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI-------------WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLI 200 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~-------------~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~ 200 (207)
.++||+.++|+.|+++||+++|+||++. .++.+++++++. ++.++++++...+||+|++|+.++.
T Consensus 42 ~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~--~~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 42 FLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP--IQVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred EecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC--EEEEEecCCCCCCCCccHHHHHHHH
Confidence 3689999999999999999999999864 245567889984 3677778877789999999999876
Q ss_pred hh
Q 028543 201 LI 202 (207)
Q Consensus 201 ~~ 202 (207)
..
T Consensus 120 ~~ 121 (166)
T TIGR01664 120 QY 121 (166)
T ss_pred Hc
Confidence 53
No 59
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.24 E-value=2.2e-10 Score=93.60 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCeEEEEcCCcccCCChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc--CCCCCHHHHHHHHHhcC
Q 028543 56 LPILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD--GRPFDLEGLKICMKKGY 133 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~--g~~~~~~~l~~~~~~~~ 133 (207)
++.|+|||||||++..+. .+.+.+|.+.. | .+.+|.++..+.+....+. ....+.+++...+ +..
T Consensus 1 ~~~v~FD~DGTL~~~~~~-~~~~~~g~~~~----------~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~-~~~ 67 (205)
T PRK13582 1 MEIVCLDLEGVLVPEIWI-AFAEKTGIPEL----------R-ATTRDIPDYDVLMKQRLDILDEHGLGLADIQEVI-ATL 67 (205)
T ss_pred CeEEEEeCCCCChhhHHH-HHHHHcCChHH----------H-HHhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHH-HhC
Confidence 468999999999964332 23333454321 1 1112333333333322221 1123445554443 345
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCS 182 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S 182 (207)
.++||+.++|+.|+++ ++++|+||+... .+.+++++++..+|+..+..
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~ 116 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEV 116 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEE
Confidence 7899999999999999 999999999865 44577899999888754433
No 60
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.21 E-value=2e-10 Score=96.57 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=55.3
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHHHH-HHHhC---CcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWYEI-IEDKL---KISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~-il~~~---~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
.++||+.++|++|+++|++++|+||++...+. ++++. ++.+||+.+|. +.+| .||+|++|+.++..+
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd-~~~g-~KP~p~~y~~i~~~l 165 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFD-TTVG-LKTEAQSYVKIAGQL 165 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEE-eCcc-cCCCHHHHHHHHHHh
Confidence 58999999999999999999999999866554 45554 68888998774 4455 799999999998754
No 61
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.21 E-value=8.8e-11 Score=89.96 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=52.6
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH--------H-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP--------I-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~--------~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
.++||+.++|++|+++|++++++||++ . .++..++.+++. |+.++.+. +..||+|++|+.++...
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~ 98 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDVLYACP--HCRKPKPGMFLEALKRF 98 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEEEEECC--CCCCCChHHHHHHHHHc
Confidence 477999999999999999999999987 3 355567888885 45455454 78899999999998765
No 62
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.17 E-value=8e-10 Score=87.94 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=78.0
Q ss_pred EEEEcCCcccCCCh-hchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHH-HHHhcCCcc
Q 028543 59 LLFDIMDTIVRDPF-YHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKI-CMKKGYAYL 136 (207)
Q Consensus 59 IlFDLDGTLvD~~~-~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~-~~~~~~~~~ 136 (207)
++||+||||++... ..-+...++.. ++.. .....+.+|+++..+..++.+..-.....+++.+ .+.+...++
T Consensus 2 ~~fD~DgTl~~~~s~~~~~~~~~~~~-~~~~-----~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T TIGR01488 2 AIFDFDGTLTRQDSLIDLLAKLLGTN-DEVI-----ELTRLAPSGRISFEDALGRRLALLHRSRSEEVAKEFLARQVALR 75 (177)
T ss_pred EEecCccccccchhhHHHHHHHhCCh-HHHH-----HHHHHHHCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHhcCCcC
Confidence 79999999998422 22233333321 1111 1233556799998888866554311112245555 455667788
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEc
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCS 182 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S 182 (207)
||+.++++.|+++|++++|+|++... ++.+++++++..+|...+..
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~ 122 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEF 122 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEE
Confidence 99999999999999999999999755 45577888988877654443
No 63
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.08 E-value=2.9e-09 Score=88.42 Aligned_cols=129 Identities=10% Similarity=0.064 Sum_probs=79.5
Q ss_pred CeEEEEcCCcccCCChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhc--CCCCCHHHHHHHHHhcCC
Q 028543 57 PILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTD--GRPFDLEGLKICMKKGYA 134 (207)
Q Consensus 57 ~~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~--g~~~~~~~l~~~~~~~~~ 134 (207)
..++|||||||++..| ..+....|...... ..+|.+..+++.+..... ....+.+.+.+... ...
T Consensus 2 ~la~FDlD~TLi~~~w-~~~~~~~g~~~~~~-----------~~~~~~~~~~~~~~r~~ll~~~g~~~~~i~~~~~-~i~ 68 (203)
T TIGR02137 2 EIACLDLEGVLVPEIW-IAFAEKTGIDALKA-----------TTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIA-TLK 68 (203)
T ss_pred eEEEEeCCcccHHHHH-HHHHHHcCCcHHHH-----------HhcCCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH-hCC
Confidence 5699999999998411 11222224322111 234555555555432221 01234455555443 457
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHHHHH-HHHHhCCcccccC--------eEEEccccCCCCCChHHHHHhhh
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPIWYE-IIEDKLKISTYLS--------WTFCSCVIGMFSKQCLKERGNLI 200 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~-~il~~~~l~~yFD--------~v~~S~evg~~KPdPeiy~~~~~ 200 (207)
++||+.++|+.|+++| +++|+||+...+. .+++++|+..+|. ..++...+ ..||++..+..++.
T Consensus 69 l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~l~ 141 (203)
T TIGR02137 69 PLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIAFK 141 (203)
T ss_pred CCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHHHHH
Confidence 8999999999999975 9999999986644 4789999988886 22222222 46788887777653
No 64
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.07 E-value=4.9e-10 Score=83.52 Aligned_cols=70 Identities=21% Similarity=0.199 Sum_probs=60.2
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCC----------------CCChHHH
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMF----------------SKQCLKE 195 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~----------------KPdPeiy 195 (207)
..+++++.++|+.|+++|++++++||.+. .....++..++..+|+.+++++..... ||+++.+
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 36889999999999999999999999874 455577888998899999999888776 9999999
Q ss_pred HHhhhhh
Q 028543 196 RGNLILI 202 (207)
Q Consensus 196 ~~~~~~~ 202 (207)
..++...
T Consensus 103 ~~~~~~~ 109 (139)
T cd01427 103 LAALKLL 109 (139)
T ss_pred HHHHHHc
Confidence 9887764
No 65
>PRK11590 hypothetical protein; Provisional
Probab=99.05 E-value=1.1e-09 Score=90.93 Aligned_cols=50 Identities=16% Similarity=-0.049 Sum_probs=38.7
Q ss_pred CCcchhHHHHH-HHHhHCCCeEEEEcCcHHHHH-HHHHhCCcccccCeEEEcc
Q 028543 133 YAYLDGVEELL-HELKQSNYEMHAFTNYPIWYE-IIEDKLKISTYLSWTFCSC 183 (207)
Q Consensus 133 ~~~~pgv~elL-~~Lk~~G~kl~IlTN~~~~~~-~il~~~~l~~yFD~v~~S~ 183 (207)
..++||+.++| +.|+++|++++|+||+++.+. .+++.+++.. .++++++.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~-~~~~i~t~ 145 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP-RVNLIASQ 145 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc-cCceEEEE
Confidence 46799999999 578889999999999986644 4777778633 55666665
No 66
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.04 E-value=1.4e-09 Score=92.48 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=73.4
Q ss_pred CCeEEEEcCCcccCC-ChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCC
Q 028543 56 LPILLFDIMDTIVRD-PFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYA 134 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~-~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~ 134 (207)
..+|+||+|||++|+ +....-...++...++ | ++.+++++.+.+.... ...
T Consensus 63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~---------y-------~~~~~fw~~y~~~~~~------------~a~ 114 (237)
T PRK11009 63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSED---------Y-------LKNQKFWEKMNNGWDE------------FSI 114 (237)
T ss_pred CcEEEEECcCccccCCchheeeeeccCCCccc---------c-------cChHHHHHHHHhcccc------------cCc
Confidence 348999999999994 3221111112111000 1 3445565555432111 136
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH----HH-HHHHHHhCCc--ccccCeEEEccccCCCCCChHHHHHhh
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP----IW-YEIIEDKLKI--STYLSWTFCSCVIGMFSKQCLKERGNL 199 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~----~~-~~~il~~~~l--~~yFD~v~~S~evg~~KPdPeiy~~~~ 199 (207)
++||+.++|+.|+++|++++++||.. +. ...+++.+++ .++|+.++++++. .||++......+
T Consensus 115 p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~--~K~~K~~~l~~~ 184 (237)
T PRK11009 115 PKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKP--GQYTKTQWLKKK 184 (237)
T ss_pred chHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCC--CCCCHHHHHHhc
Confidence 88999999999999999999999952 33 3345667999 8999988887753 788887655443
No 67
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.99 E-value=6.9e-09 Score=86.55 Aligned_cols=68 Identities=18% Similarity=0.085 Sum_probs=56.1
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEEEccccC------CCCCChHHHHHhhhhh
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTFCSCVIG------MFSKQCLKERGNLILI 202 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~~S~evg------~~KPdPeiy~~~~~~~ 202 (207)
..|-+-.+++|-.|++++ ..+.||+. .++.++++++|+.+.||++++-+... ..||+++.|+.|....
T Consensus 99 LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~a 173 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVA 173 (244)
T ss_pred cCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHh
Confidence 456677899999998874 78999997 45667899999999999988766555 4799999999998654
No 68
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.98 E-value=1.1e-08 Score=85.61 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCcccCCChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCC
Q 028543 55 KLPILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYA 134 (207)
Q Consensus 55 ~~~~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~ 134 (207)
..+.++|||||||++......+...+|...+.. .. -...-.|.++.++..+.....-...+.+.++....+...
T Consensus 4 ~~~L~vFD~D~TLi~~~~~~~~~~~~g~~~~v~-~~-----t~~~~~~~~~~~~~~~~~v~~l~g~~~~~v~~~~~~~~~ 77 (212)
T COG0560 4 MKKLAVFDLDGTLINAELIDELARGAGVGEEVL-AI-----TERAMRGELDFEESLRLRVALLKGLPVEVLEEVREEFLR 77 (212)
T ss_pred ccceEEEecccchhhHHHHHHHHHHhCCHHHHH-HH-----HHHHhcccccHHHHHHHHHHHhCCCCHHHHHHHHHhcCc
Confidence 346899999999999111111233334322211 11 112234555555555554443112234444444444378
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHHHHH-HHHHhCCcccccCeEEEccc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPIWYE-IIEDKLKISTYLSWTFCSCV 184 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~-~il~~~~l~~yFD~v~~S~e 184 (207)
+.||+.++++.|+++|++++|+|.++..+. .+.+.+|++..+...+..++
T Consensus 78 l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~d 128 (212)
T COG0560 78 LTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDD 128 (212)
T ss_pred CCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeC
Confidence 899999999999999999999999997655 47789999888876666665
No 69
>PRK06769 hypothetical protein; Validated
Probab=98.93 E-value=1.4e-09 Score=87.77 Aligned_cols=69 Identities=10% Similarity=-0.058 Sum_probs=54.2
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH---------HHHHHHhCCcccccCeEE-EccccCCCCCChHHHHHhhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW---------YEIIEDKLKISTYLSWTF-CSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~---------~~~il~~~~l~~yFD~v~-~S~evg~~KPdPeiy~~~~~~~ 202 (207)
.++||+.++|++|+++|++++|+||++.. +...++.+++.++|..+. ++++++..||+|++|+.++...
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l 106 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKH 106 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 57899999999999999999999998631 223356777766654333 5677889999999999998754
No 70
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.92 E-value=3.6e-09 Score=84.80 Aligned_cols=67 Identities=16% Similarity=0.001 Sum_probs=56.0
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH----------------HHHHHHHHhCCcccccCeEEE-----ccccCCCCCCh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP----------------IWYEIIEDKLKISTYLSWTFC-----SCVIGMFSKQC 192 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~----------------~~~~~il~~~~l~~yFD~v~~-----S~evg~~KPdP 192 (207)
.++||+.++|++|+++||+++|+||++ ..+..+++.+|+. ||.++. |++++..||+|
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP~~ 106 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKPKI 106 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCCCH
Confidence 588999999999999999999999962 2345567889985 886654 58999999999
Q ss_pred HHHHHhhhhh
Q 028543 193 LKERGNLILI 202 (207)
Q Consensus 193 eiy~~~~~~~ 202 (207)
++|+.++...
T Consensus 107 ~~~~~~~~~~ 116 (161)
T TIGR01261 107 KLLEPYLKKN 116 (161)
T ss_pred HHHHHHHHHc
Confidence 9999987653
No 71
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.92 E-value=3.5e-09 Score=85.45 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=53.0
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH----------------HHHHHHHhCCcccccCeEEEc-----------cccC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI----------------WYEIIEDKLKISTYLSWTFCS-----------CVIG 186 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~----------------~~~~il~~~~l~~yFD~v~~S-----------~evg 186 (207)
.++||+.++|++|+++||+++|+||++. .+..+++..++. ||.++.+ ++.+
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~ 103 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQVCD 103 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCCcccccccCCCC
Confidence 5789999999999999999999999873 223345566664 7777654 3666
Q ss_pred CCCCChHHHHHhhhhh
Q 028543 187 MFSKQCLKERGNLILI 202 (207)
Q Consensus 187 ~~KPdPeiy~~~~~~~ 202 (207)
.+||+|++|+.++...
T Consensus 104 ~~KP~p~~~~~a~~~~ 119 (176)
T TIGR00213 104 CRKPKPGMLLQARKEL 119 (176)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 8999999999998754
No 72
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.91 E-value=2.6e-08 Score=81.15 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=38.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCe
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSW 178 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~ 178 (207)
.++||+.++|+.++++|++++|+||++.. ...+.+.+++.++|..
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~ 132 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGT 132 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEec
Confidence 57899999999999999999999999865 4446688899888765
No 73
>PRK08238 hypothetical protein; Validated
Probab=98.87 E-value=4.2e-08 Score=91.20 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=50.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHH
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLK 194 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPei 194 (207)
.++||+.++|++++++|++++|+||+++. .+.+.+++|+ ||.++++++....||++..
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~ 130 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDGTTNLKGAAKA 130 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCCccccCCchHH
Confidence 46799999999999999999999999865 4457788887 9999999999889887654
No 74
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.86 E-value=3.2e-08 Score=84.01 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=77.0
Q ss_pred eEEEEcCCcccCCChhchHHHHHcCC--HHHHHHhhCchHHHHHHhCCCCH--HHHHHHHhhcCCCCCHHHHHHHHHhcC
Q 028543 58 ILLFDIMDTIVRDPFYHDVPAFFGMS--MKELIECKHPNAWIEFEMGMISE--MELARKFFTDGRPFDLEGLKICMKKGY 133 (207)
Q Consensus 58 ~IlFDLDGTLvD~~~~~~l~~~~g~~--~~~~~~~~~~~~w~~~e~G~Is~--~e~~~~~~~~g~~~~~~~l~~~~~~~~ 133 (207)
.|+||+|+||+|.+-...+.+.++.. .+++.+. +..|.+++ ...++.+...| .+.+++.+.+. ..
T Consensus 2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~--------~~~~~wt~~m~~vl~~L~~~g--vt~~~I~~~l~-~i 70 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRES--------YPKGGWTEYMDRVLQLLHEQG--VTPEDIRDALR-SI 70 (234)
T ss_pred EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHh--------ccccchHHHHHHHHHHHHHcC--CCHHHHHHHHH-cC
Confidence 58999999999955555554455332 1333332 22233332 13333333323 55677777664 45
Q ss_pred CcchhHHHHHHHH--hHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEc
Q 028543 134 AYLDGVEELLHEL--KQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCS 182 (207)
Q Consensus 134 ~~~pgv~elL~~L--k~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S 182 (207)
.+.||+.++++.+ ++.|+.+.|+|+++.. ++.++++.|+...|+.|++-
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TN 122 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTN 122 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeC
Confidence 6789999999999 5579999999999865 55689999999999988765
No 75
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.68 E-value=3.3e-08 Score=86.19 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=60.3
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhhhcc
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILIFIR 205 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~~~~ 205 (207)
-||+.++|++|+++|++++|+||+++ .....++.+|+.+|||.+++++++...||+|++.-.-.+.+|..
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e~~d~~~~~~~~~ 218 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMSTEDRQYRYVFTK 218 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCccccccccceEEec
Confidence 39999999999999999999999874 45567899999999999999999999999998765555555543
No 76
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.66 E-value=2.6e-07 Score=77.00 Aligned_cols=49 Identities=18% Similarity=0.032 Sum_probs=36.3
Q ss_pred CcchhHHHHHH-HHhHCCCeEEEEcCcHHHH-HHHHHhCCcccccCeEEEcc
Q 028543 134 AYLDGVEELLH-ELKQSNYEMHAFTNYPIWY-EIIEDKLKISTYLSWTFCSC 183 (207)
Q Consensus 134 ~~~pgv~elL~-~Lk~~G~kl~IlTN~~~~~-~~il~~~~l~~yFD~v~~S~ 183 (207)
.++||+.++|+ .|+++|++++|+||+++.+ +.+.+..++.. .++++++.
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~-~~~~i~t~ 144 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIH-RLNLIASQ 144 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccc-cCcEEEEE
Confidence 57899999995 7888999999999998654 44555655533 24566554
No 77
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.62 E-value=9.8e-08 Score=84.16 Aligned_cols=65 Identities=6% Similarity=0.002 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHh----CCcccccCeEEEccccCCCCCChHHHHHhhhhhhc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDK----LKISTYLSWTFCSCVIGMFSKQCLKERGNLILIFI 204 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~----~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~~~ 204 (207)
+++|+.++|+.|+++|++++|+||++. ....++++ +++.+||+.+.++ .||+|+.++.++..+-+
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i 101 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNL 101 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCC
Confidence 579999999999999999999999974 45567788 8999999988665 58999999999876543
No 78
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.52 E-value=1.3e-07 Score=74.50 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=54.7
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCccc-ccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKIST-YLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~-yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
.++||+.++|++|+ ++++++|+||++.. ++.+++++++.. +|+.+++++++...||+ |+.+|..+
T Consensus 45 ~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l 111 (148)
T smart00577 45 KKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLL 111 (148)
T ss_pred EECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHc
Confidence 57899999999998 57999999999854 556788888865 56999999999999997 77777654
No 79
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.44 E-value=2.4e-07 Score=80.29 Aligned_cols=69 Identities=13% Similarity=-0.034 Sum_probs=60.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHHH-HHHHhCCccc-ccCeEEEcc-------ccCCCCCChHHHHHhhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWYE-IIEDKLKIST-YLSWTFCSC-------VIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~-~il~~~~l~~-yFD~v~~S~-------evg~~KPdPeiy~~~~~~~ 202 (207)
.++||+.++|+.|+++|++++++||++.... ..++.+++.+ |||.+++++ +.+..||+|++++.+|...
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 5789999999999999999999999986544 4778889886 999999998 5678899999999999754
No 80
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.41 E-value=2.6e-06 Score=73.68 Aligned_cols=56 Identities=5% Similarity=-0.094 Sum_probs=41.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH----HHHHHHhCCcccc-cCeEEEccccCCCCC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW----YEIIEDKLKISTY-LSWTFCSCVIGMFSK 190 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~----~~~il~~~~l~~y-FD~v~~S~evg~~KP 190 (207)
.++||+.++|+.|+++|++++++||.... ....++++|+..+ +++++.-. .+..||
T Consensus 118 ~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~-~~~~K~ 178 (266)
T TIGR01533 118 KPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK-DKSSKE 178 (266)
T ss_pred CcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC-CCCCcH
Confidence 57899999999999999999999997521 2245678898665 46776654 334444
No 81
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.31 E-value=1.8e-06 Score=77.51 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=52.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCc---------------H-HHHHHHHHhCCcccccCeEEE-----ccccCCCCCCh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNY---------------P-IWYEIIEDKLKISTYLSWTFC-----SCVIGMFSKQC 192 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~---------------~-~~~~~il~~~~l~~yFD~v~~-----S~evg~~KPdP 192 (207)
.++||+.++|++|+++|++++|+||+ + .....+++.+++ +|+.++. +++.+.+||+|
T Consensus 30 ~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl--~fd~i~i~~~~~sd~~~~rKP~p 107 (354)
T PRK05446 30 AFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGI--KFDEVLICPHFPEDNCSCRKPKT 107 (354)
T ss_pred eECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCC--ceeeEEEeCCcCcccCCCCCCCH
Confidence 68999999999999999999999995 1 123335677787 3777654 36788999999
Q ss_pred HHHHHhhhh
Q 028543 193 LKERGNLIL 201 (207)
Q Consensus 193 eiy~~~~~~ 201 (207)
++++.++..
T Consensus 108 ~~l~~a~~~ 116 (354)
T PRK05446 108 GLVEEYLAE 116 (354)
T ss_pred HHHHHHHHH
Confidence 999988754
No 82
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.29 E-value=8e-07 Score=76.11 Aligned_cols=67 Identities=6% Similarity=-0.127 Sum_probs=53.0
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHHHHHH-HHHhCCcccccCeEEEccccCC---CCCChHHHHHhhhh
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPIWYEI-IEDKLKISTYLSWTFCSCVIGM---FSKQCLKERGNLIL 201 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~-il~~~~l~~yFD~v~~S~evg~---~KPdPeiy~~~~~~ 201 (207)
.++++.+.++.|++.|++++++||+...+.. .....++..+|+.+.++..... .||+|++|+.++..
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~ 191 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRA 191 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHH
Confidence 3688999999999999999999998755442 3356788889987776655443 79999999999864
No 83
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.29 E-value=5e-06 Score=69.72 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=76.9
Q ss_pred CeEEEEcCCcccCCChhchHHHHHcC--CHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCC
Q 028543 57 PILLFDIMDTIVRDPFYHDVPAFFGM--SMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYA 134 (207)
Q Consensus 57 ~~IlFDLDGTLvD~~~~~~l~~~~g~--~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~ 134 (207)
-.+.||+|.||+|..-...+...++- .++++...+....|.++- ..+++++-++| ...+++++.+.. ..
T Consensus 14 il~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M------~rv~k~Lheqg--v~~~~ik~~~r~-iP 84 (256)
T KOG3120|consen 14 ILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELM------DRVFKELHEQG--VRIAEIKQVLRS-IP 84 (256)
T ss_pred EEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHH------HHHHHHHHHcC--CCHHHHHHHHhc-CC
Confidence 47889999999994333323333322 124444444445565331 13333333223 345667776654 45
Q ss_pred cchhHHHHHHHHhHCC-CeEEEEcCcHHH-HHHHHHhCCcccccCeEEEc
Q 028543 135 YLDGVEELLHELKQSN-YEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCS 182 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G-~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S 182 (207)
..||+.++++.+++.| |.+.|+|..+.. ++.++++.++.+.|+.|++-
T Consensus 85 ~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTN 134 (256)
T KOG3120|consen 85 IVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTN 134 (256)
T ss_pred CCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcC
Confidence 5699999999999999 499999999865 55688999999999988753
No 84
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.28 E-value=1.2e-06 Score=75.59 Aligned_cols=67 Identities=7% Similarity=-0.116 Sum_probs=49.2
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHHHHH--HHHHhCCcccccCeEE---EccccCCCCCChHHHHHhhhhh
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPIWYE--IIEDKLKISTYLSWTF---CSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~--~il~~~~l~~yFD~v~---~S~evg~~KPdPeiy~~~~~~~ 202 (207)
.++++.++++.|+++|+ ++|+||+..... ..+...+...+|+.+. +.+.+...||+|++|+.++...
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~ 215 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENF 215 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHh
Confidence 37899999999998887 899999864322 1223456667777554 3455667899999999988654
No 85
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.28 E-value=3.7e-07 Score=73.93 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=35.8
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcC--cHHHHHHHHHhCCcc----------cccCeEEE
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTN--YPIWYEIIEDKLKIS----------TYLSWTFC 181 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN--~~~~~~~il~~~~l~----------~yFD~v~~ 181 (207)
..+||++.++|++|+++|++++++|- .|.+...+++.+++. ++|+..-+
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI 104 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEI 104 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEE
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhhe
Confidence 46899999999999999999999994 477788889999999 88887433
No 86
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.21 E-value=2e-05 Score=65.03 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCcccCCChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHH-hc
Q 028543 54 RKLPILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMK-KG 132 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~-~~ 132 (207)
++-++|.||+|-|++-+.--..+.+..|+..+.. .+ -.+.=.|.++.++-++.....-. +..+++..... +.
T Consensus 14 ~~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va--~~----T~rAMng~~~F~eaL~~Rl~llq-p~~~qv~~~v~~~k 86 (227)
T KOG1615|consen 14 RSADAVCFDVDSTVIQEEGIDELAAYCGVGEAVA--EV----TRRAMNGEADFQEALAARLSLLQ-PLQVQVEQFVIKQK 86 (227)
T ss_pred HhcCeEEEecCcchhHHhhHHHHHHHhCchHHHH--HH----HHHHhCCCCcHHHHHHHHHHHhc-ccHHHHHHHHhcCC
Confidence 4557999999999986322223454555532211 11 11222477887777766554311 22334444333 34
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHHHHH-HHHhCCccc
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIWYEI-IEDKLKIST 174 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~-il~~~~l~~ 174 (207)
..+-||+.+++..||++|.+|+++|.+.+.+.. +.+.+|+..
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 577899999999999999999999999865443 667777754
No 87
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.19 E-value=2.2e-06 Score=66.52 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=46.5
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCc-HHHHHHHHHhCCcccccCeEEEccccCCCCCChHHHHH
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNY-PIWYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERG 197 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~-~~~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~ 197 (207)
.++|.+.++|++++.+||-++.+|=. +...-+.++.+++.+||+.+| .+|+|.-++-
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~V-------iePhP~K~~M 98 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIV-------IEPHPYKFLM 98 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEE-------ecCCChhHHH
Confidence 68999999999999999999988854 444444678999999999887 5788876653
No 88
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.15 E-value=6.2e-06 Score=66.33 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=46.6
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHH-HHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWY-EIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~-~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
.++||+.++|++|+++|++++|+||++ ... +.+.+.+++..+ .+..||+|++|..++...
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~---------~~~~KP~p~~~~~~l~~~ 104 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVL---------PHAVKPPGCAFRRAHPEM 104 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEE---------cCCCCCChHHHHHHHHHc
Confidence 467999999999999999999999987 343 334466665432 245799999999998754
No 89
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.14 E-value=5.4e-06 Score=77.94 Aligned_cols=65 Identities=17% Similarity=-0.011 Sum_probs=55.7
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHH-------------HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhh
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPI-------------WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLIL 201 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~-------------~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~ 201 (207)
++||+.+.|+.|+++||+++|+||.+. .+..+++.+++. |+.++++++...+||+|..++.++..
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~ 275 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEE 275 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHh
Confidence 679999999999999999999999643 244567888874 99899888889999999999988764
No 90
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.03 E-value=4.4e-05 Score=66.43 Aligned_cols=76 Identities=14% Similarity=0.012 Sum_probs=61.4
Q ss_pred CCCCCHHHHHHHHH-hcCCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeE------EEccccCCC
Q 028543 117 GRPFDLEGLKICMK-KGYAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWT------FCSCVIGMF 188 (207)
Q Consensus 117 g~~~~~~~l~~~~~-~~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v------~~S~evg~~ 188 (207)
+...+.+.++.... ....+.||+.++++.|+++|++++|+|++... +..+++++++.+.+..+ |..+.+-..
T Consensus 103 ~~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG 182 (277)
T TIGR01544 103 QQAFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKG 182 (277)
T ss_pred cCCCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeC
Confidence 44566777777665 46789999999999999999999999999754 66688889987777777 656667777
Q ss_pred CCCh
Q 028543 189 SKQC 192 (207)
Q Consensus 189 KPdP 192 (207)
||+|
T Consensus 183 ~~~P 186 (277)
T TIGR01544 183 FKGP 186 (277)
T ss_pred CCCC
Confidence 9999
No 91
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.99 E-value=1.4e-05 Score=71.39 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=45.3
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhC-C-------cccccCeEEEccccCCCCC
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKL-K-------ISTYLSWTFCSCVIGMFSK 190 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~-~-------l~~yFD~v~~S~evg~~KP 190 (207)
....||+.++|+.|+++|++++|+||++.. .+.+++.+ + +.+|||.|+++. .||
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a----~KP 245 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDA----RKP 245 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCC----CCC
Confidence 456899999999999999999999999855 44577775 6 899999999665 676
No 92
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.94 E-value=1.3e-05 Score=70.12 Aligned_cols=54 Identities=15% Similarity=0.020 Sum_probs=46.7
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCC
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFS 189 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~K 189 (207)
-|++.++|++|+++|++++|+||+++ .....++.+++.+|||.++++++.....
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~k~ 204 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAGEY 204 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCccccc
Confidence 39999999999999999999999964 4556889999999999999998866433
No 93
>PLN02645 phosphoglycolate phosphatase
Probab=97.92 E-value=2.6e-05 Score=68.58 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH----HHHHHHHHhCCcccccCeEEEccc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP----IWYEIIEDKLKISTYLSWTFCSCV 184 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~----~~~~~il~~~~l~~yFD~v~~S~e 184 (207)
++||+.+.|+.|+++|+++.++||.+ ..+...++++|+.-.++.|++|..
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~ 98 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSF 98 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHH
Confidence 45899999999999999999999965 223334477899888899998864
No 94
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.86 E-value=1.8e-05 Score=66.79 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=45.2
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHH-H--HHHHhCCccc-ccCeEEEccccC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWY-E--IIEDKLKIST-YLSWTFCSCVIG 186 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~-~--~il~~~~l~~-yFD~v~~S~evg 186 (207)
.++||+.++|++|+++|++++++||+++.. + ..++++|+.. +||.|++|.++.
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~ 80 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIA 80 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHH
Confidence 578999999999999999999999986432 2 4668999987 999999998754
No 95
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.83 E-value=3.7e-05 Score=67.93 Aligned_cols=118 Identities=11% Similarity=-0.002 Sum_probs=62.6
Q ss_pred eEEEEcCCcccCC-ChhchHHHHHcCCHHHHHHh---hCch-HHHHHHhCCCCHHHHHHHHhhc-CCCCCHHHHHHHHHh
Q 028543 58 ILLFDIMDTIVRD-PFYHDVPAFFGMSMKELIEC---KHPN-AWIEFEMGMISEMELARKFFTD-GRPFDLEGLKICMKK 131 (207)
Q Consensus 58 ~IlFDLDGTLvD~-~~~~~l~~~~g~~~~~~~~~---~~~~-~w~~~e~G~Is~~e~~~~~~~~-g~~~~~~~l~~~~~~ 131 (207)
+++||+||||++. .......+++ +.+... ++.. .+. ...+-.+..+..+.+++. |.+.+.+++....
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~eal----~~L~~~~~~~g~~~~fl-TNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~-- 74 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGASDAL----RRLNRNQGQLKIPYIFL-TNGGGFSERARAEEISSLLGVDVSPLQVIQSH-- 74 (321)
T ss_pred EEEEeCcCceECCccccHHHHHHH----HHHhccccccCCCEEEE-ecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh--
Confidence 6899999999993 2233333333 222111 0111 010 011224555666666444 6666655432221
Q ss_pred cCCcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEccccCCCCCChHHHH
Q 028543 132 GYAYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKER 196 (207)
Q Consensus 132 ~~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~ 196 (207)
..+..+++..+ +..++|.|++. ...++..| |+.+++++++...||+|++|.
T Consensus 75 -----~~~~~ll~~~~--~~v~viG~~~~---~~~l~~~G----~~~vv~~~~~~~~~p~~~~~~ 125 (321)
T TIGR01456 75 -----SPYKSLVNKYE--KRILAVGTGSV---RGVAEGYG----FQNVVHQDEIVRYFRDIDPFS 125 (321)
T ss_pred -----HHHHHHHHHcC--CceEEEeChHH---HHHHHHcC----CcccccHHHHHhcCCCCCccc
Confidence 24556665442 23345666553 23334566 777888888999999988763
No 96
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.82 E-value=1.2e-05 Score=64.34 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCccc
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKIST 174 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~ 174 (207)
|++.++|++++++|++++|+|.++.. ...+.+.+++..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 44449999999999999999999865 444667778754
No 97
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.80 E-value=4.1e-05 Score=66.37 Aligned_cols=53 Identities=15% Similarity=-0.009 Sum_probs=41.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH----HHHHHHHh-CCcccccCeEEEccccC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI----WYEIIEDK-LKISTYLSWTFCSCVIG 186 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~----~~~~il~~-~~l~~yFD~v~~S~evg 186 (207)
.++||+.+.|++|+++|.++..+||.+. .....++. .+++.-.|.|++|.+.-
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at 81 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDAT 81 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHH
Confidence 3679999999999999999999999752 23333455 67767789999997653
No 98
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.73 E-value=0.00019 Score=60.88 Aligned_cols=55 Identities=4% Similarity=-0.162 Sum_probs=40.5
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHH----HHHHHhCCcccccCeEEEccccCCCC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWY----EIIEDKLKISTYLSWTFCSCVIGMFS 189 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~----~~il~~~~l~~yFD~v~~S~evg~~K 189 (207)
..+|++.++++.|+++|++|.++||-+... ...+...|+..+ ++++.-..-...|
T Consensus 120 paip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~ 178 (229)
T TIGR01675 120 PALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNK 178 (229)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCc
Confidence 467999999999999999999999976322 234567787654 7777765333444
No 99
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.70 E-value=0.00013 Score=59.54 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=21.7
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
..++||+.|+|++|++.|+.+.++|..+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~ 99 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARP 99 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-S
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecC
Confidence 4689999999999999998888888764
No 100
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=97.62 E-value=0.00019 Score=61.16 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=36.5
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH----HHHHHHHHhCCcccccCeEEEccc
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP----IWYEIIEDKLKISTYLSWTFCSCV 184 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~----~~~~~il~~~~l~~yFD~v~~S~e 184 (207)
+|++.++|++|+++|+++.++||.. ..+...++.+|+....|.|++|..
T Consensus 19 i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~ 71 (249)
T TIGR01457 19 IPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASM 71 (249)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHH
Confidence 4678888999999999999999832 334445677888766778888753
No 101
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.58 E-value=0.00011 Score=59.34 Aligned_cols=51 Identities=14% Similarity=0.028 Sum_probs=41.8
Q ss_pred HHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 143 LHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 143 L~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
++.|+++|++++|+||++.. ....++++++..+|+.+ ||+|+.|+.++...
T Consensus 43 ~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~---------kpkp~~~~~~~~~l 94 (169)
T TIGR02726 43 VIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGI---------KKKTEPYAQMLEEM 94 (169)
T ss_pred HHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecC---------CCCHHHHHHHHHHc
Confidence 56678899999999999754 55578999999888742 89999999988754
No 102
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=97.53 E-value=0.00024 Score=57.51 Aligned_cols=64 Identities=19% Similarity=0.087 Sum_probs=50.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
.++|++.++|++|+++|++++++|+-+. ....+.+.+|+ ++.++.+... .||+|.+|..++...
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi---~~~~v~a~~~--~kP~~k~~~~~i~~l 191 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGI---FDSIVFARVI--GKPEPKIFLRIIKEL 191 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTS---CSEEEEESHE--TTTHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhccCcceeeeecccccccccccccccc---cccccccccc--ccccchhHHHHHHHH
Confidence 4679999999999999999999998754 45556788888 5555555544 899999888877653
No 103
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.45 E-value=0.00021 Score=56.50 Aligned_cols=51 Identities=16% Similarity=-0.042 Sum_probs=42.3
Q ss_pred HHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhh
Q 028543 142 LLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLIL 201 (207)
Q Consensus 142 lL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~ 201 (207)
+|++|+++|++++|+||++. ..+.+++++++..+|+. .||+|+.++.++..
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~---------~~~k~~~~~~~~~~ 87 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQG---------QSNKLIAFSDILEK 87 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEec---------ccchHHHHHHHHHH
Confidence 78999999999999999974 45567899999888763 37899999988764
No 104
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.38 E-value=0.00013 Score=61.72 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=36.5
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH----HHHHHHhCCcccccCeEEEcccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW----YEIIEDKLKISTYLSWTFCSCVI 185 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~----~~~il~~~~l~~yFD~v~~S~ev 185 (207)
..+||+.++++.++++|++|.++||-++. ...-|.+.|+. ..|.++...+-
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~-~~~~l~lr~~~ 169 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFP-GWDHLILRPDK 169 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTS-TBSCGEEEEES
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCC-ccchhcccccc
Confidence 47899999999999999999999997532 22245667764 34666554433
No 105
>PTZ00445 p36-lilke protein; Provisional
Probab=97.38 E-value=0.00051 Score=57.56 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=45.5
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHH----------------HHHHHHHhCCcccccCeEEEcc-----------ccCC
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPI----------------WYEIIEDKLKISTYLSWTFCSC-----------VIGM 187 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~----------------~~~~il~~~~l~~yFD~v~~S~-----------evg~ 187 (207)
+-|...+++.+|++.|++|.|+|=+.. -++..+++.+...-.+.+++-+ .+|.
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl 155 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGL 155 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcc
Confidence 446788889999999999999997643 2333556555544445555332 2599
Q ss_pred CCCChHH--H--HHhhh
Q 028543 188 FSKQCLK--E--RGNLI 200 (207)
Q Consensus 188 ~KPdPei--y--~~~~~ 200 (207)
.||+|++ | +..+.
T Consensus 156 ~KPdp~iK~yHle~ll~ 172 (219)
T PTZ00445 156 DAPMPLDKSYHLKQVCS 172 (219)
T ss_pred cCCCccchHHHHHHHHH
Confidence 9999999 9 66554
No 106
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.38 E-value=0.0017 Score=56.39 Aligned_cols=50 Identities=8% Similarity=-0.120 Sum_probs=37.1
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHHH----HHHHhCCcccccCeEEEccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWYE----IIEDKLKISTYLSWTFCSCV 184 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~----~il~~~~l~~yFD~v~~S~e 184 (207)
..+||+.++.+.|+++|++|.++||-.+... +-|.+.|+.. .++++.-..
T Consensus 145 pAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~-~~~LiLR~~ 198 (275)
T TIGR01680 145 PALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT-WEKLILKDP 198 (275)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC-cceeeecCC
Confidence 4679999999999999999999999753221 2356677754 377776644
No 107
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.32 E-value=0.0007 Score=58.10 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccC
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLS 177 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD 177 (207)
+++.++|+.|+++|++++++||.+ .....+++.+++..+|-
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~i 65 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPFI 65 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCEE
Confidence 456778899999999999999986 45566678888876653
No 108
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.32 E-value=0.001 Score=56.58 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=14.1
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
|+++.|+|||||||++
T Consensus 1 m~~kli~~DlDGTLl~ 16 (270)
T PRK10513 1 MAIKLIAIDMDGTLLL 16 (270)
T ss_pred CceEEEEEecCCcCcC
Confidence 4578999999999998
No 109
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0063 Score=50.08 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=66.8
Q ss_pred CeEEEEcCCcccCCChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCCcc
Q 028543 57 PILLFDIMDTIVRDPFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYAYL 136 (207)
Q Consensus 57 ~~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~~~ 136 (207)
..|+=|+|||+.-.+...-+...+|.+... .+.++.-.+.+|..+.+-+++.. .+.+.++.-+.+......-
T Consensus 4 ~vi~sDFDGTITl~Ds~~~itdtf~~~e~k-------~l~~~vls~tiS~rd~~g~mf~~-i~~s~~Eile~llk~i~Id 75 (220)
T COG4359 4 PVIFSDFDGTITLNDSNDYITDTFGPGEWK-------ALKDGVLSKTISFRDGFGRMFGS-IHSSLEEILEFLLKDIKID 75 (220)
T ss_pred eEEEecCCCceEecchhHHHHhccCchHHH-------HHHHHHhhCceeHHHHHHHHHHh-cCCCHHHHHHHHHhhcccC
Confidence 467789999987544444454445543211 12333345778877877777765 2233466666666667888
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcHH
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYPI 161 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~~ 161 (207)
||..+.+++.++++.++.++|++-.
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~ 100 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMD 100 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCc
Confidence 9999999999999999999999853
No 110
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.23 E-value=0.00098 Score=55.13 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.4
Q ss_pred CCCCeEEEEcCCcccCC
Q 028543 54 RKLPILLFDIMDTIVRD 70 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~ 70 (207)
|.++.|+|||||||++.
T Consensus 1 m~~kli~~DlDGTLl~~ 17 (230)
T PRK01158 1 MKIKAIAIDIDGTITDK 17 (230)
T ss_pred CceeEEEEecCCCcCCC
Confidence 35689999999999983
No 111
>PRK10444 UMP phosphatase; Provisional
Probab=97.20 E-value=0.00022 Score=60.96 Aligned_cols=26 Identities=8% Similarity=-0.285 Sum_probs=19.2
Q ss_pred CeEEEccccCCCCCChHHHHHhhhhh
Q 028543 177 SWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 177 D~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
+.+.+.+.+...||+|++|+.++...
T Consensus 162 ~~~~g~~~~~~gKP~~~~~~~~~~~~ 187 (248)
T PRK10444 162 EKISGRKPFYVGKPSPWIIRAALNKM 187 (248)
T ss_pred HHHhCCCccccCCCCHHHHHHHHHHc
Confidence 34455555667899999999998754
No 112
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.18 E-value=0.00011 Score=62.06 Aligned_cols=66 Identities=14% Similarity=-0.090 Sum_probs=51.5
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHHHHH-HHHHhCCcccccCeE--EEccccCCCCCChHHHHHhhhhh
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPIWYE-IIEDKLKISTYLSWT--FCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~~~~-~il~~~~l~~yFD~v--~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
++++.++++.|+++|+++ |+||+...+. ......+...+|..+ .+.+.+...||+|++|+.++...
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~ 208 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKEC 208 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHc
Confidence 689999999999899997 9999875433 234566777777755 56666678999999999998654
No 113
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.18 E-value=0.00066 Score=50.17 Aligned_cols=52 Identities=21% Similarity=0.114 Sum_probs=39.7
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH----HHHHHHHHhCCcccccCeEEEcccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP----IWYEIIEDKLKISTYLSWTFCSCVI 185 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~----~~~~~il~~~~l~~yFD~v~~S~ev 185 (207)
.++||+.++|++|+++|.++.++||.+ ..+...++.+|+.---|.|++|.+.
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~ 69 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMA 69 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHH
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHH
Confidence 578999999999999999999999974 3455556888987666889888653
No 114
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.05 E-value=0.0021 Score=54.41 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=14.7
Q ss_pred CCCCeEEEEcCCcccCC
Q 028543 54 RKLPILLFDIMDTIVRD 70 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~ 70 (207)
|+++.|+||+||||++.
T Consensus 1 M~~kli~~DlDGTLl~~ 17 (272)
T PRK10530 1 MTYRVIALDLDGTLLTP 17 (272)
T ss_pred CCccEEEEeCCCceECC
Confidence 45789999999999983
No 115
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=96.97 E-value=0.0026 Score=52.42 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=12.5
Q ss_pred CCeEEEEcCCcccC
Q 028543 56 LPILLFDIMDTIVR 69 (207)
Q Consensus 56 ~~~IlFDLDGTLvD 69 (207)
++.|+|||||||++
T Consensus 1 ik~v~~DlDGTLl~ 14 (215)
T TIGR01487 1 IKLVAIDIDGTLTE 14 (215)
T ss_pred CcEEEEecCCCcCC
Confidence 46899999999997
No 116
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=96.93 E-value=0.00084 Score=53.65 Aligned_cols=64 Identities=19% Similarity=0.095 Sum_probs=51.6
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCccc-ccCeEEEccccCCCCCChHHHHHhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKIST-YLSWTFCSCVIGMFSKQCLKERGNLIL 201 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~-yFD~v~~S~evg~~KPdPeiy~~~~~~ 201 (207)
...||+.++|++|++. |.++|.|++++. ++.+++.++... +|+.++++++....||. |..+|..
T Consensus 42 ~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~ 107 (162)
T TIGR02251 42 FKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSL 107 (162)
T ss_pred EECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchh
Confidence 4569999999999987 999999999855 455788888765 89999999988877776 5555543
No 117
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=96.88 E-value=0.0018 Score=51.63 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=42.3
Q ss_pred CCcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcc-ccc-CeEEEccccC
Q 028543 133 YAYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKIS-TYL-SWTFCSCVIG 186 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~-~yF-D~v~~S~evg 186 (207)
..++||+.++|++|++. |+++|.||++.. +..+++.++.. .+| +.+++.++.+
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~ 112 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG 112 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC
Confidence 35789999999999965 999999999865 44578899887 589 6677766643
No 118
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.72 E-value=0.0052 Score=54.05 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=22.7
Q ss_pred HHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccc
Q 028543 139 VEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTY 175 (207)
Q Consensus 139 v~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~y 175 (207)
+.+.|++|+++|+.+.++|++. .+...+++.+++..+
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p 60 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHP 60 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCe
Confidence 4455666777777777777765 334445566666543
No 119
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.66 E-value=0.0076 Score=51.11 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=14.1
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
|.++.|+||+||||++
T Consensus 1 ~~~kli~~DlDGTLl~ 16 (264)
T COG0561 1 MMIKLLAFDLDGTLLD 16 (264)
T ss_pred CCeeEEEEcCCCCccC
Confidence 4578999999999998
No 120
>PRK10976 putative hydrolase; Provisional
Probab=96.66 E-value=0.0059 Score=51.80 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=13.4
Q ss_pred CCeEEEEcCCcccCC
Q 028543 56 LPILLFDIMDTIVRD 70 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~ 70 (207)
+|.|+|||||||++.
T Consensus 2 ikli~~DlDGTLl~~ 16 (266)
T PRK10976 2 YQVVASDLDGTLLSP 16 (266)
T ss_pred ceEEEEeCCCCCcCC
Confidence 579999999999984
No 121
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=96.64 E-value=0.0065 Score=51.82 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=13.3
Q ss_pred CCeEEEEcCCcccCC
Q 028543 56 LPILLFDIMDTIVRD 70 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~ 70 (207)
++.|+|||||||++.
T Consensus 2 ~kli~~DlDGTLl~~ 16 (272)
T PRK15126 2 ARLAAFDMDGTLLMP 16 (272)
T ss_pred ccEEEEeCCCcCcCC
Confidence 579999999999983
No 122
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.58 E-value=0.01 Score=50.83 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=21.7
Q ss_pred HHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcc
Q 028543 139 VEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIS 173 (207)
Q Consensus 139 v~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~ 173 (207)
..+.|++|+++|+++.++|..+ .....+.+.+++.
T Consensus 29 ~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 29 AAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 3445666777777777777765 3444455666653
No 123
>PLN02887 hydrolase family protein
Probab=96.53 E-value=0.0096 Score=56.92 Aligned_cols=36 Identities=11% Similarity=-0.068 Sum_probs=24.5
Q ss_pred hHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcc
Q 028543 138 GVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIS 173 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~ 173 (207)
...+.|++|+++|++++|+|.-+ .....+++.+++.
T Consensus 329 ~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 329 TNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 34556778888888888888865 3444555666653
No 124
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.43 E-value=0.015 Score=47.62 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=48.3
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH---------HH-------HHHHHHhCCcccccCeEEEccc-----cCCCCCCh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP---------IW-------YEIIEDKLKISTYLSWTFCSCV-----IGMFSKQC 192 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~---------~~-------~~~il~~~~l~~yFD~v~~S~e-----vg~~KPdP 192 (207)
.+.||+.+.|..|++.||++.++||.. .. ....++..|. .||.++.--. ...+||.|
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv--~id~i~~Cph~p~~~c~cRKP~~ 108 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV--KIDGILYCPHHPEDNCDCRKPKP 108 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcccCCCh
Confidence 467899999999999999999999931 11 2223445554 5777766443 35689999
Q ss_pred HHHHHhhhh
Q 028543 193 LKERGNLIL 201 (207)
Q Consensus 193 eiy~~~~~~ 201 (207)
..++.++.-
T Consensus 109 gm~~~~~~~ 117 (181)
T COG0241 109 GMLLSALKE 117 (181)
T ss_pred HHHHHHHHH
Confidence 999998864
No 125
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.43 E-value=0.0039 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=23.4
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPI 161 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~ 161 (207)
.|++.++++.|+++||++.++|.-+.
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~ 54 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPI 54 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcH
Confidence 48999999999999999999999874
No 126
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=96.33 E-value=0.033 Score=45.94 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=44.5
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHH-H---HhCCcccccCeEEEccccCCCCCChHHHHHhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWYEII-E---DKLKISTYLSWTFCSCVIGMFSKQCLKERGNL 199 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~i-l---~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~ 199 (207)
.+||++.+.|++-++.|.+++|-|++....|.+ . ..-++..||++.|=- ..| .|-+...|..-+
T Consensus 103 hlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDt-tiG-~KrE~~SY~kIa 170 (229)
T COG4229 103 HLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDT-TIG-KKRESQSYAKIA 170 (229)
T ss_pred ccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeec-ccc-ccccchhHHHHH
Confidence 579999999999999999999999998666653 2 223566667666533 233 455555555443
No 127
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.32 E-value=0.0091 Score=47.65 Aligned_cols=64 Identities=22% Similarity=0.086 Sum_probs=45.2
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH---H--------H----HHHHHHhCCcccccCeEEEcccc-CCCCCChHHHHHh
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP---I--------W----YEIIEDKLKISTYLSWTFCSCVI-GMFSKQCLKERGN 198 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~---~--------~----~~~il~~~~l~~yFD~v~~S~ev-g~~KPdPeiy~~~ 198 (207)
..|++.+.|++|++.||++.|+||.. . . ++.+++.+++. -.++++++. ..+||.|..++.+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip---~~~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP---IQVYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS----EEEEECGCSSTTSTTSSHHHHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc---eEEEecCCCCCCCCCchhHHHHH
Confidence 34689999999999999999999951 1 1 22245666653 345666554 6899999999987
Q ss_pred hhh
Q 028543 199 LIL 201 (207)
Q Consensus 199 ~~~ 201 (207)
+..
T Consensus 107 ~~~ 109 (159)
T PF08645_consen 107 LKD 109 (159)
T ss_dssp CCC
T ss_pred HHh
Confidence 754
No 128
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=95.96 E-value=0.024 Score=45.88 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=46.6
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhhhc
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILIFI 204 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~~~ 204 (207)
-|.+.+++.++++.|.++.|+||..+ ......+++++ +++ .+..||-+..|+.||...-+
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v----~fi-----~~A~KP~~~~fr~Al~~m~l 108 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGV----PFI-----YRAKKPFGRAFRRALKEMNL 108 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCC----cee-----ecccCccHHHHHHHHHHcCC
Confidence 36888999999999999999999764 45556567775 333 35699999999999976543
No 129
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.64 E-value=0.034 Score=53.96 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=19.9
Q ss_pred hhhhccccccccCCCCCeEEEEcCCcccCC
Q 028543 41 VAMASLSGKENEKRKLPILLFDIMDTIVRD 70 (207)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~IlFDLDGTLvD~ 70 (207)
+.|...+ ..|+.+.|++|+||||+|.
T Consensus 405 ~~~~~~~----~~~~~KLIfsDLDGTLLd~ 430 (694)
T PRK14502 405 RPSRLPS----SGQFKKIVYTDLDGTLLNP 430 (694)
T ss_pred hcccCCC----cCceeeEEEEECcCCCcCC
Confidence 5555555 3377789999999999983
No 130
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=95.53 E-value=0.017 Score=54.68 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=39.5
Q ss_pred CcchhHHHHHHHHhHCC-CeEEEEcCcHHH-HHHHHHhCCcccccCeE
Q 028543 134 AYLDGVEELLHELKQSN-YEMHAFTNYPIW-YEIIEDKLKISTYLSWT 179 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G-~kl~IlTN~~~~-~~~il~~~~l~~yFD~v 179 (207)
.++||+.++|++|+++| ++++++||.+.. .+.+.+++|+.++|..+
T Consensus 384 ~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~ 431 (556)
T TIGR01525 384 QLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAEL 431 (556)
T ss_pred cchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccC
Confidence 46899999999999999 999999998755 55678999998887654
No 131
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=95.18 E-value=0.05 Score=44.06 Aligned_cols=52 Identities=17% Similarity=-0.005 Sum_probs=39.3
Q ss_pred HHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 142 LLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 142 lL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
.++.|+++|++++|+||.+. ....+++.+++..+|+. .+|.|+.++.++...
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g---------~~~k~~~l~~~~~~~ 108 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQG---------QSNKLIAFSDLLEKL 108 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecC---------CCcHHHHHHHHHHHh
Confidence 45677889999999999874 45557788998877752 356678888887643
No 132
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.17 E-value=0.057 Score=39.74 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=38.3
Q ss_pred EEEEcCCcccCC--ChhchHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCCcc
Q 028543 59 LLFDIMDTIVRD--PFYHDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYAYL 136 (207)
Q Consensus 59 IlFDLDGTLvD~--~~~~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~~~ 136 (207)
++||+||||++. ++..+ .+++ +.+.+. +...+.--..+.-+.+++.+++...|.+.+.+ +.+
T Consensus 1 ~l~D~dGvl~~g~~~ipga-~e~l----~~L~~~-g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~----------~i~ 64 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGA-VEAL----DALRER-GKPVVFLTNNSSRSREEYAKKLKKLGIPVDED----------EII 64 (101)
T ss_dssp EEEESTTTSEETTEE-TTH-HHHH----HHHHHT-TSEEEEEES-SSS-HHHHHHHHHHTTTT--GG----------GEE
T ss_pred CEEeCccEeEeCCCcCcCH-HHHH----HHHHHc-CCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcC----------EEE
Confidence 689999999982 22222 2222 222211 11111001113345567777775546554322 233
Q ss_pred hhHHHHHHHHhH--CCCeEEEEcCc
Q 028543 137 DGVEELLHELKQ--SNYEMHAFTNY 159 (207)
Q Consensus 137 pgv~elL~~Lk~--~G~kl~IlTN~ 159 (207)
.....+.++|++ .+-+++++-+.
T Consensus 65 ts~~~~~~~l~~~~~~~~v~vlG~~ 89 (101)
T PF13344_consen 65 TSGMAAAEYLKEHKGGKKVYVLGSD 89 (101)
T ss_dssp EHHHHHHHHHHHHTTSSEEEEES-H
T ss_pred ChHHHHHHHHHhcCCCCEEEEEcCH
Confidence 333334444544 46778777665
No 133
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=95.09 E-value=0.029 Score=53.02 Aligned_cols=46 Identities=17% Similarity=0.038 Sum_probs=39.3
Q ss_pred CcchhHHHHHHHHhHCCC-eEEEEcCcHHH-HHHHHHhCCcccccCeE
Q 028543 134 AYLDGVEELLHELKQSNY-EMHAFTNYPIW-YEIIEDKLKISTYLSWT 179 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~-kl~IlTN~~~~-~~~il~~~~l~~yFD~v 179 (207)
.++||+.++|++|+++|+ +++++||.+.. .+.+.+++|+.++|..+
T Consensus 362 ~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~ 409 (536)
T TIGR01512 362 EPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAEL 409 (536)
T ss_pred cchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhcc
Confidence 568999999999999999 99999998754 55678999998887643
No 134
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=94.86 E-value=0.041 Score=51.10 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=34.5
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHHHHH-HHHHh---C------CcccccCeEEEccccCCCCC
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPIWYE-IIEDK---L------KISTYLSWTFCSCVIGMFSK 190 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~~~~-~il~~---~------~l~~yFD~v~~S~evg~~KP 190 (207)
-|.+..+|+.||+.|.++.++||++-++. .+++. - ...+|||.||++ ..||
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~----A~KP 245 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVD----ARKP 245 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES------CC
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEc----CCCC
Confidence 47889999999999999999999974433 33332 2 578899999955 4786
No 135
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=94.78 E-value=0.045 Score=47.18 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=39.7
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH----HHHHHHHHhCCcccccCeEEEcccc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP----IWYEIIEDKLKISTYLSWTFCSCVI 185 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~----~~~~~il~~~~l~~yFD~v~~S~ev 185 (207)
++||+.++|++|+++|++++++||.+ ..+...++.+|+..-.+.+++|...
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~ 73 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALC 73 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHH
Confidence 56899999999999999999999953 2333445778887667888887654
No 136
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=94.78 E-value=0.33 Score=45.58 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCcccC--CChhchHH-HHHcCCHHHH--HHhhCchHHHHHHhCCCCHHHHHH---HHhhcCCCC-CHHH
Q 028543 54 RKLPILLFDIMDTIVR--DPFYHDVP-AFFGMSMKEL--IECKHPNAWIEFEMGMISEMELAR---KFFTDGRPF-DLEG 124 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD--~~~~~~l~-~~~g~~~~~~--~~~~~~~~w~~~e~G~Is~~e~~~---~~~~~g~~~-~~~~ 124 (207)
+..++++||+||||+. +.|-+=+. ++...+.-.+ .-...+-.|.-..-| .+...... ..+. |... +.+.
T Consensus 6 ~~~~~~~fD~DGTLlrs~ssFpyFmlva~eagG~~R~~~LL~l~P~l~ll~~~~-~~~~~lK~mi~v~f~-Gl~~~die~ 83 (498)
T PLN02499 6 TTSYSVVSELEGTLLKDADPFSYFMLVAFEASGLIRFALLLFLWPIIRLLDMLG-MGDAALKLMIFVATA-GVHESEIES 83 (498)
T ss_pred cccceEEEecccceecCCCccHHHHHHHHHhccHHHHHHHHHHhHHHHHHHhcC-CchHHHHHHHHHHhC-CCCHHHHHH
Confidence 4556899999999997 33433322 1221121111 112335555422213 22222222 2221 4332 2333
Q ss_pred HHHHHHhcC---CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHh-CCcc
Q 028543 125 LKICMKKGY---AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDK-LKIS 173 (207)
Q Consensus 125 l~~~~~~~~---~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~-~~l~ 173 (207)
..+++.... .+-+. ..+..++.| +++++|-.|+. .+..++. +|.+
T Consensus 84 vaRavlpkf~~~dv~~e---~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D 133 (498)
T PLN02499 84 VARAVLPKFYMDDVDME---AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRAD 133 (498)
T ss_pred HHHHHhhHHHHhhCCHH---HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCc
Confidence 333332211 11223 445667788 99999998854 4444443 6654
No 137
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=94.69 E-value=0.3 Score=46.01 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=21.2
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHHHH-HHHHHh-CCcc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPIWY-EIIEDK-LKIS 173 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~~~-~~il~~-~~l~ 173 (207)
+.+.+.+. +++.|.. .|+|-+++.+ +.+.+. +|++
T Consensus 111 l~~~a~~~---~~~~g~~-vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWRV---FNSFGKR-YIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHHH---HHhCCCE-EEEECCcHHHHHHHHHHcCCCC
Confidence 44555554 4567765 8999888654 445433 5654
No 138
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=94.37 E-value=0.059 Score=46.04 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH----HHHHHHHHhCCcccccCeEEEccc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP----IWYEIIEDKLKISTYLSWTFCSCV 184 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~----~~~~~il~~~~l~~yFD~v~~S~e 184 (207)
++||+.+.|++|+++|+++.++||.+ ..+...++.+|+.---|.|++|..
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~ 75 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAP 75 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHH
Confidence 67899999999999999999999964 234445677887644567777743
No 139
>PTZ00174 phosphomannomutase; Provisional
Probab=94.03 E-value=0.029 Score=47.46 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=15.4
Q ss_pred CCCCeEEEEcCCcccCC
Q 028543 54 RKLPILLFDIMDTIVRD 70 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~ 70 (207)
|+++.|+|||||||+++
T Consensus 3 ~~~klia~DlDGTLL~~ 19 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKP 19 (247)
T ss_pred CCCeEEEEECcCCCcCC
Confidence 77899999999999983
No 140
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=94.00 E-value=0.083 Score=45.29 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=33.3
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHH-----HHHHHhCCcccccC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWY-----EIIEDKLKISTYLS 177 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~-----~~il~~~~l~~yFD 177 (207)
.+.||+.|+|.+.-++|.+|.-+||-...- ..-+...|+...-+
T Consensus 122 k~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~ 170 (274)
T COG2503 122 KAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLE 170 (274)
T ss_pred ccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccc
Confidence 578999999999999999999999975322 12346667765554
No 141
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=93.71 E-value=0.25 Score=42.43 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=27.9
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHH----HHHHHHHhCCc
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPI----WYEIIEDKLKI 172 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~----~~~~il~~~~l 172 (207)
-+.+.+++..|+++|+++..+|..+. |..+.+..+|+
T Consensus 83 e~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi 123 (252)
T PF11019_consen 83 ESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGI 123 (252)
T ss_pred chhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCC
Confidence 37888999999999999999999642 33344566665
No 142
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=93.53 E-value=0.079 Score=50.43 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=34.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKIS 173 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~ 173 (207)
.++||+.+++++|+++|++++++||.+.. .+.+.+++|+.
T Consensus 405 ~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 405 QLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred cccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 46899999999999999999999998754 55577889984
No 143
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=93.46 E-value=0.035 Score=44.96 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=15.0
Q ss_pred CCCCeEEEEcCCcccCC
Q 028543 54 RKLPILLFDIMDTIVRD 70 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~ 70 (207)
+.++.|+||+||||+|.
T Consensus 19 ~~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 19 ENIRLLICDVDGVFSDG 35 (183)
T ss_pred hCceEEEEcCCeeeecC
Confidence 46899999999999973
No 144
>PLN02423 phosphomannomutase
Probab=92.99 E-value=0.056 Score=45.90 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.5
Q ss_pred CCCCeEE-EEcCCcccCC
Q 028543 54 RKLPILL-FDIMDTIVRD 70 (207)
Q Consensus 54 ~~~~~Il-FDLDGTLvD~ 70 (207)
+|++.|+ ||+||||+++
T Consensus 4 ~~~~~i~~~D~DGTLl~~ 21 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAP 21 (245)
T ss_pred CccceEEEEeccCCCcCC
Confidence 6778777 9999999983
No 145
>PRK10444 UMP phosphatase; Provisional
Probab=92.98 E-value=0.13 Score=43.80 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=36.5
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHH----HHHHHHHhCCcccccCeEEEcc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPI----WYEIIEDKLKISTYLSWTFCSC 183 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~----~~~~il~~~~l~~yFD~v~~S~ 183 (207)
++||+.+.+++|+++|.++.++||.+. .+.+.++.+|+.---|.+++|.
T Consensus 18 ~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~ 70 (248)
T PRK10444 18 AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSA 70 (248)
T ss_pred eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHH
Confidence 568999999999999999999999742 2334456677754456777774
No 146
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=92.53 E-value=0.25 Score=49.55 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=46.1
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccCeEEEccccCCCC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLSWTFCSCVIGMFS 189 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD~v~~S~evg~~K 189 (207)
.+.||+.+.++.|++.|+++.++|+... ....+.++.|+.++++.++.+.++...+
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~ 584 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMD 584 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCC
Confidence 4579999999999999999999999864 4556778999998888887777765443
No 147
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=92.25 E-value=0.084 Score=40.74 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=16.9
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
+.+++.+.|++|+++|+.+.++|.-+
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 44566666677766777777777643
No 148
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=92.07 E-value=0.28 Score=42.95 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=47.4
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEEEccccCCCCCChHH
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTFCSCVIGMFSKQCLK 194 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~~S~evg~~KPdPei 194 (207)
..|.+.+-|.+||+.|.-+.+=|.|. ++....++.+++.+|||.+++...-...-+..++
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~~~~~~~~ 203 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAGEYNSRVI 203 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCCcCCccce
Confidence 45888999999999999999999987 4566677899999999999887655544444433
No 149
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=91.18 E-value=0.1 Score=41.01 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=12.7
Q ss_pred CCeEEEEcCCcccC
Q 028543 56 LPILLFDIMDTIVR 69 (207)
Q Consensus 56 ~~~IlFDLDGTLvD 69 (207)
+++|+||+||||+|
T Consensus 1 ~~~~~~D~Dgtl~~ 14 (154)
T TIGR01670 1 IRLLILDVDGVLTD 14 (154)
T ss_pred CeEEEEeCceeEEc
Confidence 46899999999999
No 150
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=91.17 E-value=0.34 Score=40.76 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=38.2
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH----HHHHHHHHh-CCcccccCeEEEccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP----IWYEIIEDK-LKISTYLSWTFCSCV 184 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~----~~~~~il~~-~~l~~yFD~v~~S~e 184 (207)
.++|++.+.|+.|+++|+++.++||.. ..+...+.. +++.--.|.+++|..
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~ 69 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGS 69 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHH
Confidence 357899999999999999999999964 233333444 777666778888754
No 151
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=89.74 E-value=1.5 Score=36.81 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=10.3
Q ss_pred EEEEcCCcccC
Q 028543 59 LLFDIMDTIVR 69 (207)
Q Consensus 59 IlFDLDGTLvD 69 (207)
++||+||||++
T Consensus 1 ~lfD~DGvL~~ 11 (236)
T TIGR01460 1 FLFDIDGVLWL 11 (236)
T ss_pred CEEeCcCccCc
Confidence 58999999999
No 152
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=89.24 E-value=0.69 Score=35.97 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=31.3
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH--HHHHHHHHhCCc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP--IWYEIIEDKLKI 172 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~--~~~~~il~~~~l 172 (207)
..|+++...|..|+++|+++.++||+. ..++..++.+..
T Consensus 44 ~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkv 84 (144)
T KOG4549|consen 44 IFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKV 84 (144)
T ss_pred eeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhcc
Confidence 478999999999999999999999984 445556666554
No 153
>PRK10671 copA copper exporting ATPase; Provisional
Probab=89.06 E-value=0.51 Score=46.98 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=37.3
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCe
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSW 178 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~ 178 (207)
.++||+.+.|++|+++|++++++|+.+.. .+.+.+++|+.++|..
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~ 695 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAG 695 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeC
Confidence 45799999999999999999999998754 5557788999776553
No 154
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=88.64 E-value=0.24 Score=43.60 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=14.5
Q ss_pred CCCCeEEEEcCCcccCC
Q 028543 54 RKLPILLFDIMDTIVRD 70 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~ 70 (207)
..++.|+|||||||+++
T Consensus 124 ~~~kvIvFDLDgTLi~~ 140 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITD 140 (301)
T ss_pred ccceEEEEecCCCCcCC
Confidence 45579999999999984
No 155
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=88.39 E-value=0.93 Score=35.30 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=37.9
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCc-ccccCeEEEccccC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKI-STYLSWTFCSCVIG 186 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l-~~yFD~v~~S~evg 186 (207)
...||+.++|++|.+. |.++|.|++.. ..+.+++.+.- ..+|++++..++..
T Consensus 36 ~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~ 89 (159)
T PF03031_consen 36 KLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCT 89 (159)
T ss_dssp EE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSE
T ss_pred eeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhcccccccccccccc
Confidence 4569999999999665 99999999874 45556666655 56899998877654
No 156
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=88.04 E-value=0.26 Score=39.54 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=13.0
Q ss_pred CCeEEEEcCCcccCC
Q 028543 56 LPILLFDIMDTIVRD 70 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~ 70 (207)
+++|+||.||||.+.
T Consensus 1 i~~i~fDktGTLt~~ 15 (215)
T PF00702_consen 1 IDAICFDKTGTLTQG 15 (215)
T ss_dssp ESEEEEECCTTTBES
T ss_pred CeEEEEecCCCcccC
Confidence 468999999999983
No 157
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=87.98 E-value=0.54 Score=42.53 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=38.0
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHHHHH-HHHH---hCCcccccCeEEEccccCCCCCC
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPIWYE-IIED---KLKISTYLSWTFCSCVIGMFSKQ 191 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~~~~-~il~---~~~l~~yFD~v~~S~evg~~KPd 191 (207)
-|....+|+.|++.|.++.++||+|-.+- .-+. .-...+.||.|+ |...||+
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVI----vqA~KP~ 297 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVI----VQANKPE 297 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeE----EecCCCc
Confidence 46788899999999999999999985433 2122 235677899887 4556664
No 158
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=87.79 E-value=0.21 Score=40.83 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=10.6
Q ss_pred EEEEcCCcccCC
Q 028543 59 LLFDIMDTIVRD 70 (207)
Q Consensus 59 IlFDLDGTLvD~ 70 (207)
|+|||||||+|+
T Consensus 1 i~~DlDGTLl~~ 12 (225)
T TIGR01482 1 IASDIDGTLTDP 12 (225)
T ss_pred CeEeccCccCCC
Confidence 589999999983
No 159
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=87.61 E-value=0.3 Score=39.76 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=10.4
Q ss_pred EEEEcCCcccC
Q 028543 59 LLFDIMDTIVR 69 (207)
Q Consensus 59 IlFDLDGTLvD 69 (207)
|+||+||||++
T Consensus 1 i~~DlDGTLl~ 11 (254)
T PF08282_consen 1 IFSDLDGTLLN 11 (254)
T ss_dssp EEEECCTTTCS
T ss_pred cEEEECCceec
Confidence 78999999998
No 160
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=87.10 E-value=1.2 Score=36.38 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=29.1
Q ss_pred hHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcc
Q 028543 138 GVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIS 173 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~ 173 (207)
...++|+.|+++|++++++||.+ .....+.+.+++.
T Consensus 20 ~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 20 PAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 36788899999999999999987 4455667788875
No 161
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=86.93 E-value=2.3 Score=34.66 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=45.3
Q ss_pred eEEEEcCCcccCCChh-chHHHHHcCCHHHHHHhhCchHHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCCcc
Q 028543 58 ILLFDIMDTIVRDPFY-HDVPAFFGMSMKELIECKHPNAWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYAYL 136 (207)
Q Consensus 58 ~IlFDLDGTLvD~~~~-~~l~~~~g~~~~~~~~~~~~~~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~~~ 136 (207)
-+..|+||||.|.+.. ..+...| +.....-.+..+.-..-|.|+.+++++-+-.. +........+-
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f----~kslse~d~t~y~lhkil~i~~ee~~k~~e~~---------ea~l~ke~l~~ 74 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAF----EKSLSEADPTDYDLHKILNITTEEFWKWMEQT---------EAWLYKEALLA 74 (194)
T ss_pred heeeccCCceecCcccchhccHHH----HhhhhhcccccccHHHHhCccHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 4789999999994322 2222222 22111111111111223556766776543210 00111111234
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcHH
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYPI 161 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~~ 161 (207)
.++...|..++++ .+++.+|.-..
T Consensus 75 q~v~~~L~~~~e~-~~L~~itar~~ 98 (194)
T COG5663 75 QLVKQVLPSLKEE-HRLIYITARKA 98 (194)
T ss_pred HHHHHHhHHHHhh-ceeeeeehhhH
Confidence 6777888888876 68888887543
No 162
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=86.04 E-value=0.37 Score=40.36 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=10.9
Q ss_pred eEEEEcCCcccC
Q 028543 58 ILLFDIMDTIVR 69 (207)
Q Consensus 58 ~IlFDLDGTLvD 69 (207)
.|+|||||||++
T Consensus 1 li~~DlDGTLl~ 12 (225)
T TIGR02461 1 VIFTDLDGTLLP 12 (225)
T ss_pred CEEEeCCCCCcC
Confidence 489999999998
No 163
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=85.17 E-value=1.5 Score=43.33 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=34.8
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKIST 174 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~ 174 (207)
.+.||+.+.+++|+++|++++++|+.+.. ...+.+++|+..
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~ 609 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDF 609 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCe
Confidence 46799999999999999999999998744 555778999863
No 164
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=85.11 E-value=0.41 Score=37.33 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=10.8
Q ss_pred CeEEEEcCCcccC
Q 028543 57 PILLFDIMDTIVR 69 (207)
Q Consensus 57 ~~IlFDLDGTLvD 69 (207)
++++|||||||++
T Consensus 1 k~LVlDLD~TLv~ 13 (159)
T PF03031_consen 1 KTLVLDLDGTLVH 13 (159)
T ss_dssp EEEEEE-CTTTEE
T ss_pred CEEEEeCCCcEEE
Confidence 4799999999998
No 165
>PLN02645 phosphoglycolate phosphatase
Probab=85.11 E-value=0.22 Score=43.67 Aligned_cols=62 Identities=5% Similarity=-0.230 Sum_probs=42.4
Q ss_pred HHHHHHHhH-CCCeEEEEcCcHHHH--HHHHHhCCcccccCeEEEccccCC---CCCChHHHHHhhhhh
Q 028543 140 EELLHELKQ-SNYEMHAFTNYPIWY--EIIEDKLKISTYLSWTFCSCVIGM---FSKQCLKERGNLILI 202 (207)
Q Consensus 140 ~elL~~Lk~-~G~kl~IlTN~~~~~--~~il~~~~l~~yFD~v~~S~evg~---~KPdPeiy~~~~~~~ 202 (207)
......|+. .| -++|+||....+ ...+...+...+|+.+..+..... .||+|++|..++...
T Consensus 176 ~~a~~~l~~~~g-~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~ 243 (311)
T PLN02645 176 QYATLCIRENPG-CLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKF 243 (311)
T ss_pred HHHHHHHhcCCC-CEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHc
Confidence 334555654 34 589999987533 223345678788998877766443 599999999998754
No 166
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=85.03 E-value=1.8 Score=36.21 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCccc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIST 174 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~ 174 (207)
..++..+.|++|+++|+++.++|+.+ .....+++.+++..
T Consensus 16 ~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 16 EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 45789999999999999999999976 55666778888754
No 167
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=84.87 E-value=0.45 Score=40.00 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=11.2
Q ss_pred eEEEEcCCcccCC
Q 028543 58 ILLFDIMDTIVRD 70 (207)
Q Consensus 58 ~IlFDLDGTLvD~ 70 (207)
.|+|||||||++.
T Consensus 1 li~~DlDGTLl~~ 13 (256)
T TIGR00099 1 LIFIDLDGTLLND 13 (256)
T ss_pred CEEEeCCCCCCCC
Confidence 3789999999983
No 168
>PRK06769 hypothetical protein; Validated
Probab=84.73 E-value=0.62 Score=37.27 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.9
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
..|++|+||.||||.-
T Consensus 2 ~~~~~~~~d~d~~~~~ 17 (173)
T PRK06769 2 TNIQAIFIDRDGTIGG 17 (173)
T ss_pred CCCcEEEEeCCCcccC
Confidence 4689999999999964
No 169
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=84.61 E-value=2.9 Score=33.87 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=33.3
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIS 173 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~ 173 (207)
.+-|...+.|++|+++|++++++|..+ .....+++.+++.
T Consensus 15 ~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 15 KISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred eeCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 355889999999999999999999976 5566677788875
No 170
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=84.41 E-value=0.52 Score=37.99 Aligned_cols=15 Identities=7% Similarity=0.434 Sum_probs=13.7
Q ss_pred CCCeEEEEcCCcccC
Q 028543 55 KLPILLFDIMDTIVR 69 (207)
Q Consensus 55 ~~~~IlFDLDGTLvD 69 (207)
.+++++||+||||.|
T Consensus 6 ~i~~~v~d~dGv~td 20 (169)
T TIGR02726 6 NIKLVILDVDGVMTD 20 (169)
T ss_pred cCeEEEEeCceeeEC
Confidence 378999999999999
No 171
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=84.26 E-value=1.9 Score=37.97 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCcchhHHHHHHHHhHCC-CeEEEEcCcHHHHHHHHHhCCcccccCeEEEcccc
Q 028543 133 YAYLDGVEELLHELKQSN-YEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCVI 185 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~G-~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~ev 185 (207)
..++|..-++++.+|+.| .++.|+||+.. ..+++.+. .+|.++.|=+-
T Consensus 91 PTLy~~L~elI~~~k~~g~~~tflvTNgsl--pdv~~~L~---~~dql~~sLdA 139 (296)
T COG0731 91 PTLYPNLGELIEEIKKRGKKTTFLVTNGSL--PDVLEELK---LPDQLYVSLDA 139 (296)
T ss_pred cccccCHHHHHHHHHhcCCceEEEEeCCCh--HHHHHHhc---cCCEEEEEecc
Confidence 468899999999999999 79999999965 33444444 57888877543
No 172
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=84.24 E-value=0.56 Score=37.30 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=10.6
Q ss_pred CeEEEEcCCcccCC
Q 028543 57 PILLFDIMDTIVRD 70 (207)
Q Consensus 57 ~~IlFDLDGTLvD~ 70 (207)
|.+.||+||||+.+
T Consensus 1 Kia~fD~DgTLi~~ 14 (159)
T PF08645_consen 1 KIAFFDLDGTLIKT 14 (159)
T ss_dssp SEEEE-SCTTTEE-
T ss_pred CEEEEeCCCCccCC
Confidence 46899999999973
No 173
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=82.61 E-value=0.31 Score=41.37 Aligned_cols=65 Identities=6% Similarity=-0.097 Sum_probs=43.2
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHHHHHH---HH-HhCCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPIWYEI---IE-DKLKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~---il-~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
++.+...+..|+ +|.+ .++||....+.. .. ..-.+...++...+.+.+...||+|++|+.++...
T Consensus 123 y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~ 191 (249)
T TIGR01457 123 YEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHL 191 (249)
T ss_pred HHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHc
Confidence 566667777775 5776 889997432221 11 12234455666667777888999999999998754
No 174
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=82.34 E-value=0.74 Score=40.65 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.3
Q ss_pred CCCCeEEEEcCCcccCC
Q 028543 54 RKLPILLFDIMDTIVRD 70 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~ 70 (207)
..++.|+|||||||+++
T Consensus 126 ~~~~~i~~D~D~TL~~~ 142 (303)
T PHA03398 126 EIPHVIVFDLDSTLITD 142 (303)
T ss_pred eeccEEEEecCCCccCC
Confidence 44579999999999984
No 175
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=81.76 E-value=2.8 Score=35.16 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=31.5
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIS 173 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~ 173 (207)
+-+...+.|++|+++|++++++|+.+ .....+.+.+++.
T Consensus 17 i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 17 ISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 45788999999999999999999986 4455566777765
No 176
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=81.61 E-value=0.73 Score=37.21 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=11.1
Q ss_pred eEEEEcCCcccCC
Q 028543 58 ILLFDIMDTIVRD 70 (207)
Q Consensus 58 ~IlFDLDGTLvD~ 70 (207)
.|+||+||||++.
T Consensus 1 li~~D~DgTL~~~ 13 (204)
T TIGR01484 1 LLFFDLDGTLLDP 13 (204)
T ss_pred CEEEeCcCCCcCC
Confidence 3789999999973
No 177
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=81.41 E-value=4 Score=34.33 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=29.0
Q ss_pred hHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCccc
Q 028543 138 GVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIST 174 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~ 174 (207)
...+.++.|+++|+++.++|+.+ ..+..+++.+++..
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLED 57 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCC
Confidence 46778899999999999999975 55666677888753
No 178
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=81.36 E-value=0.79 Score=37.57 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=10.9
Q ss_pred EEEEcCCcccCC
Q 028543 59 LLFDIMDTIVRD 70 (207)
Q Consensus 59 IlFDLDGTLvD~ 70 (207)
|++||||||++.
T Consensus 2 i~~DlDGTLL~~ 13 (221)
T TIGR02463 2 VFSDLDGTLLDS 13 (221)
T ss_pred EEEeCCCCCcCC
Confidence 789999999983
No 179
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=80.47 E-value=4.1 Score=35.98 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH-HH--HHHHHHhCCcccccCeEEEccccCC
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP-IW--YEIIEDKLKISTYLSWTFCSCVIGM 187 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~-~~--~~~il~~~~l~~yFD~v~~S~evg~ 187 (207)
+..|...+-++|++.|++..-..-.+ .. ........++++-...|+++.|...
T Consensus 110 yvig~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hf 165 (306)
T KOG2882|consen 110 YVIGEEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHF 165 (306)
T ss_pred EEecchhhhHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEEeccccc
Confidence 34677788888999997655444332 11 1111123344555667777766544
No 180
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=80.25 E-value=0.97 Score=36.39 Aligned_cols=16 Identities=13% Similarity=0.515 Sum_probs=14.4
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
-+++.+|||+||||.|
T Consensus 6 ~~IkLli~DVDGvLTD 21 (170)
T COG1778 6 KNIKLLILDVDGVLTD 21 (170)
T ss_pred hhceEEEEeccceeec
Confidence 4678999999999999
No 181
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=80.02 E-value=1 Score=36.50 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=15.6
Q ss_pred cCCCCCeEEEEcCCcccC
Q 028543 52 EKRKLPILLFDIMDTIVR 69 (207)
Q Consensus 52 ~~~~~~~IlFDLDGTLvD 69 (207)
.++.+++|++|||+||+-
T Consensus 24 ~~~Gikgvi~DlDNTLv~ 41 (175)
T COG2179 24 KAHGIKGVILDLDNTLVP 41 (175)
T ss_pred HHcCCcEEEEeccCceec
Confidence 347789999999999996
No 182
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=79.46 E-value=1.1 Score=35.73 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=11.7
Q ss_pred CeEEEEcCCcccC
Q 028543 57 PILLFDIMDTIVR 69 (207)
Q Consensus 57 ~~IlFDLDGTLvD 69 (207)
++++||.||||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 5899999999994
No 183
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=79.17 E-value=1.1 Score=38.49 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=11.7
Q ss_pred CeEEEEcCCcccC
Q 028543 57 PILLFDIMDTIVR 69 (207)
Q Consensus 57 ~~IlFDLDGTLvD 69 (207)
..|+||+||||++
T Consensus 15 ~li~~D~DGTLl~ 27 (266)
T PRK10187 15 YAWFFDLDGTLAE 27 (266)
T ss_pred EEEEEecCCCCCC
Confidence 3799999999997
No 184
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=79.04 E-value=5 Score=35.62 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=32.7
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCV 184 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~e 184 (207)
.++|...++++.++++|+.+.|.||+.. ...++.+ ....|.+..|=+
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~--~e~l~~L--~~~~d~i~VSLd 188 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTR--PDVLEKL--EEEPTQLYVSLD 188 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCC--HHHHHHH--HhcCCEEEEEcc
Confidence 4568899999999999999999999842 1222333 233566665543
No 185
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=78.54 E-value=0.96 Score=38.14 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=11.3
Q ss_pred eEEEEcCCcccCC
Q 028543 58 ILLFDIMDTIVRD 70 (207)
Q Consensus 58 ~IlFDLDGTLvD~ 70 (207)
.|+||+||||++.
T Consensus 1 li~~DlDGTll~~ 13 (256)
T TIGR01486 1 WIFTDLDGTLLDP 13 (256)
T ss_pred CEEEcCCCCCcCC
Confidence 3789999999983
No 186
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=77.89 E-value=1.2 Score=37.49 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.9
Q ss_pred CeEEEEcCCcccC
Q 028543 57 PILLFDIMDTIVR 69 (207)
Q Consensus 57 ~~IlFDLDGTLvD 69 (207)
.+++||+||||+.
T Consensus 4 ~~l~lD~DGTL~~ 16 (244)
T TIGR00685 4 RAFFFDYDGTLSE 16 (244)
T ss_pred EEEEEecCccccC
Confidence 5899999999997
No 187
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=77.77 E-value=1.9 Score=34.83 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=15.0
Q ss_pred CCCCCeEEEEcCCcccC
Q 028543 53 KRKLPILLFDIMDTIVR 69 (207)
Q Consensus 53 ~~~~~~IlFDLDGTLvD 69 (207)
...+++|+||+|+||+.
T Consensus 38 ~~Gik~li~DkDNTL~~ 54 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTP 54 (168)
T ss_pred hcCceEEEEcCCCCCCC
Confidence 36789999999999986
No 188
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=76.92 E-value=7.9 Score=30.84 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=40.6
Q ss_pred HHhcCCcchhHHHHHHHHhHCCCeEEEEcCc---HHH----HHHHHHhCCcccccCeEEEcc
Q 028543 129 MKKGYAYLDGVEELLHELKQSNYEMHAFTNY---PIW----YEIIEDKLKISTYLSWTFCSC 183 (207)
Q Consensus 129 ~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~---~~~----~~~il~~~~l~~yFD~v~~S~ 183 (207)
+++...+.|++++++++|-+. |.++|+|-. |.. .+.+.+.+++.+|=..|||..
T Consensus 63 fFRnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn 123 (180)
T COG4502 63 FFRNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN 123 (180)
T ss_pred hhhhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC
Confidence 344456789999999999886 999999986 332 333567888888777777764
No 189
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=76.31 E-value=5.6 Score=33.71 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCCCeEEEEcCCcccCC
Q 028543 54 RKLPILLFDIMDTIVRD 70 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~ 70 (207)
+.++.++.|+-|||.++
T Consensus 5 ~~v~gvLlDlSGtLh~e 21 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIE 21 (262)
T ss_pred cccceEEEeccceEecc
Confidence 67789999999999985
No 190
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=75.40 E-value=5.5 Score=32.39 Aligned_cols=39 Identities=5% Similarity=0.039 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIS 173 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~ 173 (207)
+-+...+.|++|+++|++++++|..+ .....+++.+++.
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 44677889999999999999999976 4455566667753
No 191
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=74.61 E-value=4.6 Score=39.82 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=36.4
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLS 177 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD 177 (207)
.+.|++.+.+++||++|+++.++|.-++ ..+.+.+++|+++++-
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~A 581 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRA 581 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhhec
Confidence 4578999999999999999999999764 4566778999976553
No 192
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=73.81 E-value=5.9 Score=38.87 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTY 175 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~y 175 (207)
+.||+.+.+++||+.|+++.++|.-+ ...+.+.+++|++++
T Consensus 446 ~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v 487 (679)
T PRK01122 446 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDF 487 (679)
T ss_pred CchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEE
Confidence 46999999999999999999999975 445567788998653
No 193
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=73.74 E-value=1.6 Score=36.29 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=11.1
Q ss_pred eEEEEcCCcccCC
Q 028543 58 ILLFDIMDTIVRD 70 (207)
Q Consensus 58 ~IlFDLDGTLvD~ 70 (207)
.|++||||||+++
T Consensus 1 li~~DlDgTLl~~ 13 (236)
T TIGR02471 1 LIITDLDNTLLGD 13 (236)
T ss_pred CeEEeccccccCC
Confidence 3789999999983
No 194
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=73.46 E-value=5.3 Score=39.15 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=34.3
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTY 175 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~y 175 (207)
.+.||+.+.+++|++.|+++.++|..+. ....+.+++|++++
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v 488 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDF 488 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEE
Confidence 3469999999999999999999999764 45557788898654
No 195
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=72.66 E-value=6.8 Score=38.42 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=35.2
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCccccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYL 176 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yF 176 (207)
.+.||+.+.+++||+.|+++.++|.-+ .....+.+++|+.++|
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~ 484 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFV 484 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEE
Confidence 346999999999999999999999975 4455677889997543
No 196
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=69.96 E-value=11 Score=30.14 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHHH
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPIW 162 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~~ 162 (207)
..+|+.++.+.++++||++.-+|.-+.+
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~ 55 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIG 55 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHH
Confidence 3479999999999999999999998754
No 197
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=69.87 E-value=13 Score=29.70 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=29.1
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKL 170 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~ 170 (207)
.+-+.+.+.|++|+++|.+++++|+.+ .....+++.+
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 455889999999999999999999986 4455554443
No 198
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=69.21 E-value=2.6 Score=41.42 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.9
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
.+.+.|+||+||||++
T Consensus 490 ~~~rLi~~D~DGTL~~ 505 (726)
T PRK14501 490 ASRRLLLLDYDGTLVP 505 (726)
T ss_pred ccceEEEEecCccccC
Confidence 4557999999999997
No 199
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=68.39 E-value=3.2 Score=32.99 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.4
Q ss_pred CeEEEEcCCcccCC
Q 028543 57 PILLFDIMDTIVRD 70 (207)
Q Consensus 57 ~~IlFDLDGTLvD~ 70 (207)
++++||.||||.++
T Consensus 2 ~~~~~d~dg~l~~~ 15 (161)
T TIGR01261 2 KILFIDRDGTLIEE 15 (161)
T ss_pred CEEEEeCCCCcccc
Confidence 58999999999983
No 200
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=67.01 E-value=3.8 Score=36.03 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=13.8
Q ss_pred CCCCeEEEEcCCcccCC
Q 028543 54 RKLPILLFDIMDTIVRD 70 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD~ 70 (207)
.....|+||||.||+++
T Consensus 120 ~~phVIVfDlD~TLItd 136 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITD 136 (297)
T ss_pred CCCcEEEEECCCccccc
Confidence 34468999999999973
No 201
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=66.85 E-value=11 Score=31.96 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=28.5
Q ss_pred HHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEEEcc
Q 028543 139 VEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTFCSC 183 (207)
Q Consensus 139 v~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~~S~ 183 (207)
|.++|..|+++ +.||++|.+. ..++.-+....+.+.||++|.-+
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~en 45 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPEN 45 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEGG
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHcccchHhhCCeeecCC
Confidence 57899999975 9999999984 33333222234556788877544
No 202
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=66.29 E-value=3.2 Score=34.80 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=10.4
Q ss_pred eEEEEcCCcccC
Q 028543 58 ILLFDIMDTIVR 69 (207)
Q Consensus 58 ~IlFDLDGTLvD 69 (207)
.|+.||||||+|
T Consensus 3 li~tDlDGTLl~ 14 (249)
T TIGR01485 3 LLVSDLDNTLVD 14 (249)
T ss_pred EEEEcCCCcCcC
Confidence 577899999996
No 203
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=65.45 E-value=10 Score=33.54 Aligned_cols=40 Identities=25% Similarity=0.145 Sum_probs=30.3
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH----HHHHHHHHhCCcc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP----IWYEIIEDKLKIS 173 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~----~~~~~il~~~~l~ 173 (207)
.++||+.|++..|++.|-.+.++||.. +.+.+-.+++|+.
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 578999999999999999999999964 2222333566664
No 204
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=63.69 E-value=16 Score=29.52 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=28.7
Q ss_pred CcchhHHHHHHHHhHCCC--eEEEEcCcH--------HHHHHHHHhCCc
Q 028543 134 AYLDGVEELLHELKQSNY--EMHAFTNYP--------IWYEIIEDKLKI 172 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~--kl~IlTN~~--------~~~~~il~~~~l 172 (207)
.+.|.+.+.+++|++.+- ++.|+||+. ...+.+.+.+|+
T Consensus 59 ~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgI 107 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGI 107 (168)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCC
Confidence 466899999999999865 499999972 234445566774
No 205
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=62.30 E-value=4.7 Score=38.38 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.7
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
-+-++++||+||||+.
T Consensus 166 ~~~Kia~fD~DGTLi~ 181 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIK 181 (526)
T ss_pred ccCcEEEEECCCCccc
Confidence 4457999999999996
No 206
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=61.65 E-value=5.1 Score=31.04 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=12.1
Q ss_pred CeEEEEcCCcccCC
Q 028543 57 PILLFDIMDTIVRD 70 (207)
Q Consensus 57 ~~IlFDLDGTLvD~ 70 (207)
..+++||||||++.
T Consensus 3 ~~lvldld~tl~~~ 16 (148)
T smart00577 3 KTLVLDLDETLVHS 16 (148)
T ss_pred cEEEEeCCCCeECC
Confidence 36999999999984
No 207
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=61.63 E-value=5.6 Score=34.52 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=13.8
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
.+-++++||+||||.+
T Consensus 16 a~~~~~~lDyDGTl~~ 31 (266)
T COG1877 16 ARKRLLFLDYDGTLTE 31 (266)
T ss_pred ccceEEEEeccccccc
Confidence 4457999999999998
No 208
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=61.17 E-value=7.6 Score=34.17 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=35.8
Q ss_pred CCcchhHHHHHHHHhHC----CCeEEEEcCcH----HHHHH-HHHhCCcccccCeEEEc
Q 028543 133 YAYLDGVEELLHELKQS----NYEMHAFTNYP----IWYEI-IEDKLKISTYLSWTFCS 182 (207)
Q Consensus 133 ~~~~pgv~elL~~Lk~~----G~kl~IlTN~~----~~~~~-il~~~~l~~yFD~v~~S 182 (207)
..++||+.+.++.|+++ |+++.++||.. ..... +.+++|+.---+.++.|
T Consensus 15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s 73 (321)
T TIGR01456 15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQS 73 (321)
T ss_pred ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhh
Confidence 35689999999999998 99999999963 23333 33777775334455555
No 209
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=60.48 E-value=21 Score=29.82 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=33.0
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEE
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTF 180 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~ 180 (207)
.-|...++++.++++|.+++++|..+ ..+..+.+.+++.. .+.++
T Consensus 22 ~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~-p~~~I 67 (249)
T TIGR01485 22 ALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLT-PDIWV 67 (249)
T ss_pred HHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCC-CCEEE
Confidence 44788999999999999999999976 44555666677532 44344
No 210
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=60.32 E-value=5.5 Score=31.88 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.3
Q ss_pred eEEEEcCCcccCCCh
Q 028543 58 ILLFDIMDTIVRDPF 72 (207)
Q Consensus 58 ~IlFDLDGTLvD~~~ 72 (207)
.|++|+||||..++.
T Consensus 1 VVvsDIDGTiT~SD~ 15 (157)
T PF08235_consen 1 VVVSDIDGTITKSDV 15 (157)
T ss_pred CEEEeccCCcCccch
Confidence 489999999987544
No 211
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=59.91 E-value=13 Score=31.52 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=29.7
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH----HHHHHHHhCCcc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI----WYEIIEDKLKIS 173 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~----~~~~il~~~~l~ 173 (207)
...||+.|.|++|+.++.+|--+||... ...+-+.++|+.
T Consensus 23 ~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~ 66 (262)
T KOG3040|consen 23 AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD 66 (262)
T ss_pred ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC
Confidence 3679999999999988999999999742 233334556653
No 212
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=59.90 E-value=6.5 Score=36.74 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=18.4
Q ss_pred CeEEEEcCCcccCCChhchHHHHHcC
Q 028543 57 PILLFDIMDTIVRDPFYHDVPAFFGM 82 (207)
Q Consensus 57 ~~IlFDLDGTLvD~~~~~~l~~~~g~ 82 (207)
+.|+||+||||..+++...+..+.|.
T Consensus 376 kiVVsDiDGTITkSD~~Ghv~~miGk 401 (580)
T COG5083 376 KIVVSDIDGTITKSDALGHVKQMIGK 401 (580)
T ss_pred cEEEEecCCcEEehhhHHHHHHHhcc
Confidence 57999999999986555444445444
No 213
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=59.79 E-value=9.5 Score=32.20 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=23.8
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHH
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPI 161 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~ 161 (207)
+.++..++++.|++.|+++.|.||+..
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 347889999999999999999999964
No 214
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=59.10 E-value=13 Score=28.56 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.3
Q ss_pred CCeEEEEcCCcccC
Q 028543 56 LPILLFDIMDTIVR 69 (207)
Q Consensus 56 ~~~IlFDLDGTLvD 69 (207)
+++|+||+||||++
T Consensus 1 ~K~i~~DiDGTL~~ 14 (126)
T TIGR01689 1 MKRLVMDLDNTITL 14 (126)
T ss_pred CCEEEEeCCCCccc
Confidence 36899999999986
No 215
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=58.18 E-value=19 Score=36.49 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=31.7
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKI 172 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l 172 (207)
++.|++...+..||+.|++++++|+-+.. ...+.++.|+
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi 762 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGI 762 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCc
Confidence 45689999999999999999999997654 3346677883
No 216
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=57.25 E-value=21 Score=35.43 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=33.7
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIST 174 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~ 174 (207)
.+.|++.+.++.|++.|+++.++|.-. .....+.+++|+.+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 356899999999999999999999975 44555778889854
No 217
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=56.94 E-value=7.9 Score=31.73 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=16.6
Q ss_pred CCeEEEEcCCcccCCC--hhchHHHH
Q 028543 56 LPILLFDIMDTIVRDP--FYHDVPAF 79 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~~--~~~~l~~~ 79 (207)
.++|++|.||||..++ +.+.+..+
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~ 30 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDF 30 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHh
Confidence 5799999999998742 33444433
No 218
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=56.82 E-value=18 Score=36.64 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=39.5
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEEEccccCC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTFCSCVIGM 187 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~~S~evg~ 187 (207)
.+.|++.+.++.|++.|+++.++|.-. .....+.+++|+.+ +.++.+.|+..
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~~v~~G~el~~ 602 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--GEVLIGSDIET 602 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--cCceeHHHHHh
Confidence 356899999999999999999999965 44555778889852 45666665543
No 219
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=56.76 E-value=19 Score=36.50 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=33.5
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIST 174 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~ 174 (207)
.+.|++.+.++.|++.|+++.++|+.. .....+.++.|+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFS 578 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCC
Confidence 467999999999999999999999865 44555667788753
No 220
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=56.13 E-value=6.3 Score=31.19 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=12.2
Q ss_pred CeEEEEcCCcccCC
Q 028543 57 PILLFDIMDTIVRD 70 (207)
Q Consensus 57 ~~IlFDLDGTLvD~ 70 (207)
+.+++|||+||+..
T Consensus 2 ~~lvlDLDeTLi~~ 15 (162)
T TIGR02251 2 KTLVLDLDETLVHS 15 (162)
T ss_pred cEEEEcCCCCcCCC
Confidence 47999999999984
No 221
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=56.02 E-value=18 Score=31.07 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=32.7
Q ss_pred HHHHHHHHHh-cCCcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCC
Q 028543 122 LEGLKICMKK-GYAYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLK 171 (207)
Q Consensus 122 ~~~l~~~~~~-~~~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~ 171 (207)
.+++.+.... ...+.+|+.++++.|+++++++.|.|-+- .-+..++++.+
T Consensus 77 k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~ 128 (246)
T PF05822_consen 77 KSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAG 128 (246)
T ss_dssp GGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcC
Confidence 3444444432 35678999999999999999999999985 55666666654
No 222
>PLN03017 trehalose-phosphatase
Probab=55.81 E-value=7.2 Score=35.45 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=10.8
Q ss_pred CeEEEEcCCccc
Q 028543 57 PILLFDIMDTIV 68 (207)
Q Consensus 57 ~~IlFDLDGTLv 68 (207)
.+|++|+||||+
T Consensus 112 ~llflD~DGTL~ 123 (366)
T PLN03017 112 IVMFLDYDGTLS 123 (366)
T ss_pred eEEEEecCCcCc
Confidence 478899999999
No 223
>PLN02382 probable sucrose-phosphatase
Probab=55.53 E-value=7.5 Score=35.69 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.4
Q ss_pred eEEEEcCCcccCC
Q 028543 58 ILLFDIMDTIVRD 70 (207)
Q Consensus 58 ~IlFDLDGTLvD~ 70 (207)
.|+-||||||+|.
T Consensus 11 lI~sDLDGTLL~~ 23 (413)
T PLN02382 11 MIVSDLDHTMVDH 23 (413)
T ss_pred EEEEcCCCcCcCC
Confidence 4556999999984
No 224
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=55.51 E-value=50 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
+.+.+.++++.+++.|+.+.+.||+.
T Consensus 75 l~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 75 LQAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred CcHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 45678899999999999999999985
No 225
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=54.26 E-value=9 Score=30.38 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=14.3
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
..+++|++|+||||.+
T Consensus 23 ~~v~~vv~D~Dgtl~~ 38 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVY 38 (170)
T ss_pred CCCCEEEEecCCcccc
Confidence 5678999999999997
No 226
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=54.09 E-value=22 Score=27.89 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.9
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
+.+.++++.+|+.|+++.+-||+.
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC
Confidence 678899999999999999999974
No 227
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=53.25 E-value=23 Score=35.86 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=38.6
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEEEccccCC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTFCSCVIGM 187 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~~S~evg~ 187 (207)
.+.|++.+.+++|++.|+++.++|.-. .....+.+++|+.. +.++...++..
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~~vi~G~el~~ 602 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--GEPLLGTEIEA 602 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCccchHhhhh
Confidence 356899999999999999999999965 44555778889852 34555555443
No 228
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=53.14 E-value=28 Score=35.15 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=51.7
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcccccC----eEEEccccCCCCCChHHHHHhhhhhhcc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKISTYLS----WTFCSCVIGMFSKQCLKERGNLILIFIR 205 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~~yFD----~v~~S~evg~~KPdPeiy~~~~~~~~~~ 205 (207)
.|.+++.+.++.+++.|++|..+|.-.. ....+.+..|+...=+ ..++..|.....|+..--....-+.|-|
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR 660 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFAR 660 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEe
Confidence 4578999999999999999999999753 3445667788766555 5666667766666655555555555554
No 229
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=52.88 E-value=21 Score=30.64 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHHHhHCCCeEEEEcCcHH-HHHHHHHhCCcc
Q 028543 139 VEELLHELKQSNYEMHAFTNYPI-WYEIIEDKLKIS 173 (207)
Q Consensus 139 v~elL~~Lk~~G~kl~IlTN~~~-~~~~il~~~~l~ 173 (207)
+.+++.+|+..||+|..+|++.. ++..+.+.+++.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 34467788999999999999874 344455666665
No 230
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=51.92 E-value=7.9 Score=38.99 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=13.0
Q ss_pred CCCeEEEEcCCcccC
Q 028543 55 KLPILLFDIMDTIVR 69 (207)
Q Consensus 55 ~~~~IlFDLDGTLvD 69 (207)
+.++|++|+||||++
T Consensus 595 ~~rlI~LDyDGTLlp 609 (854)
T PLN02205 595 TTRAILLDYDGTLMP 609 (854)
T ss_pred cCeEEEEecCCcccC
Confidence 447999999999996
No 231
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=51.90 E-value=8.6 Score=31.80 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=12.2
Q ss_pred CeEEEEcCCcccC
Q 028543 57 PILLFDIMDTIVR 69 (207)
Q Consensus 57 ~~IlFDLDGTLvD 69 (207)
++++.|||+||+|
T Consensus 22 klLVLDLDeTLvh 34 (195)
T TIGR02245 22 KLLVLDIDYTLFD 34 (195)
T ss_pred cEEEEeCCCceEc
Confidence 6899999999998
No 232
>PLN02151 trehalose-phosphatase
Probab=51.36 E-value=8.3 Score=34.89 Aligned_cols=36 Identities=6% Similarity=-0.185 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHhCCcccccC--eEEEccccCCCCCChHHHHH
Q 028543 158 NYPIWYEIIEDKLKISTYLS--WTFCSCVIGMFSKQCLKERG 197 (207)
Q Consensus 158 N~~~~~~~il~~~~l~~yFD--~v~~S~evg~~KPdPeiy~~ 197 (207)
|+......+++.+++...-+ .+|..+|+. |.+.|++
T Consensus 269 dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~T----DEDaF~~ 306 (354)
T PLN02151 269 DKGKALEFLLESLGYANCTDVFPIYIGDDRT----DEDAFKI 306 (354)
T ss_pred CHHHHHHHHHHhcccccCCCCeEEEEcCCCc----HHHHHHH
Confidence 55566677777777654322 466666654 5555553
No 233
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.16 E-value=1.5e+02 Score=25.73 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHhHCCCeEEEEcCc-HHHHHHHHHhCCc
Q 028543 123 EGLKICMKKGYAYLDGVEELLHELKQSNYEMHAFTNY-PIWYEIIEDKLKI 172 (207)
Q Consensus 123 ~~l~~~~~~~~~~~pgv~elL~~Lk~~G~kl~IlTN~-~~~~~~il~~~~l 172 (207)
+++.+.-.....+.||+.+.++.|.++ ++=+++|.+ ...+.++....|+
T Consensus 72 ~dlrr~sE~sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~ 121 (315)
T COG4030 72 RDLRRISELSAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGV 121 (315)
T ss_pred HHHHHHHHhhcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCC
Confidence 344444344457889999999999886 555555554 4445555555554
No 234
>PLN02580 trehalose-phosphatase
Probab=50.94 E-value=9.4 Score=34.92 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=11.3
Q ss_pred CeEEEEcCCcccC
Q 028543 57 PILLFDIMDTIVR 69 (207)
Q Consensus 57 ~~IlFDLDGTLvD 69 (207)
.+++||+||||..
T Consensus 120 ~~LfLDyDGTLaP 132 (384)
T PLN02580 120 IALFLDYDGTLSP 132 (384)
T ss_pred eEEEEecCCccCC
Confidence 4788999999986
No 235
>PTZ00174 phosphomannomutase; Provisional
Probab=49.54 E-value=41 Score=28.16 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=23.6
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.+-|...+.|++|+++|++++++|.-+
T Consensus 22 ~is~~~~~ai~~l~~~Gi~~viaTGR~ 48 (247)
T PTZ00174 22 PITQEMKDTLAKLKSKGFKIGVVGGSD 48 (247)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 355778899999999999999999975
No 236
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=49.37 E-value=32 Score=34.67 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=36.8
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEEEcccc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTFCSCVI 185 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~~S~ev 185 (207)
+.|++.+.+++|++.|+++.++|.-. .....+.+++|+.. +.++.+.++
T Consensus 516 ~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~--~~v~~g~~l 565 (867)
T TIGR01524 516 PKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDA--NDFLLGADI 565 (867)
T ss_pred CchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC--CCeeecHhh
Confidence 46899999999999999999999965 34555678889852 234444444
No 237
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=49.17 E-value=38 Score=34.42 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=37.9
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEEEcccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTFCSCVI 185 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~~S~ev 185 (207)
.+.|++.+.++.|++.|+++.++|.-. .....+.++.|+.+-=+.++.+.+.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~ 631 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEF 631 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHh
Confidence 346899999999999999999999965 4455576788885422345544444
No 238
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=48.71 E-value=31 Score=29.62 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=44.6
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHH-Hh---CCcccccCeEEEccccCCCCCChHHHHHhhhhh
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWYEIIE-DK---LKISTYLSWTFCSCVIGMFSKQCLKERGNLILI 202 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il-~~---~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~~ 202 (207)
..++++...++..++.|.+++|-|++....|..+ .+ -.+.+|+++.|=- .+| .|-.-.+|..-..+|
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt-~iG-~K~e~~sy~~I~~~I 193 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDT-TIG-LKVESQSYKKIGHLI 193 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhc-ccc-ceehhHHHHHHHHHh
Confidence 4689999999999999999999999987767633 22 2344444433311 233 466667776665544
No 239
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=46.63 E-value=14 Score=29.27 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=12.3
Q ss_pred CeEEEEcCCcccCC
Q 028543 57 PILLFDIMDTIVRD 70 (207)
Q Consensus 57 ~~IlFDLDGTLvD~ 70 (207)
..+++|||.||+.+
T Consensus 7 l~LVLDLDeTLihs 20 (156)
T TIGR02250 7 LHLVLDLDQTLIHT 20 (156)
T ss_pred eEEEEeCCCCcccc
Confidence 37999999999994
No 240
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=45.89 E-value=44 Score=32.66 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=37.8
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHHHHH-HHHhC-CcccccC-eEEEccccCC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIWYEI-IEDKL-KISTYLS-WTFCSCVIGM 187 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~-il~~~-~l~~yFD-~v~~S~evg~ 187 (207)
++.|++.++|+++.+. |.++|.|=+.+.++. +++-+ +-..||. .|++-++-+.
T Consensus 201 KlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~ 256 (635)
T KOG0323|consen 201 KLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPF 256 (635)
T ss_pred EeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCc
Confidence 5679999999999977 999999999866554 44444 3346775 5665555333
No 241
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=44.73 E-value=14 Score=33.96 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.9
Q ss_pred CCeEEEEcCCcccCC
Q 028543 56 LPILLFDIMDTIVRD 70 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~ 70 (207)
-+.+.||+||||+|+
T Consensus 75 ~K~i~FD~dgtlI~t 89 (422)
T KOG2134|consen 75 SKIIMFDYDGTLIDT 89 (422)
T ss_pred cceEEEecCCceeec
Confidence 357999999999993
No 242
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=44.43 E-value=74 Score=30.24 Aligned_cols=66 Identities=11% Similarity=-0.025 Sum_probs=53.5
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCc--HHH-HHHHHHhCCcccccCeEEEccccCCCCCChHHHHHhhhh
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNY--PIW-YEIIEDKLKISTYLSWTFCSCVIGMFSKQCLKERGNLIL 201 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~--~~~-~~~il~~~~l~~yFD~v~~S~evg~~KPdPeiy~~~~~~ 201 (207)
.....++.+++.++|.+|.++|.. |.. ...++...|.+-+=--++.|.|.-..|-.-..|.++|.+
T Consensus 101 n~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~ 169 (635)
T COG5610 101 NKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKL 169 (635)
T ss_pred cccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhh
Confidence 345678999999999999999996 544 555777888765445689999999999999999988865
No 243
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=44.34 E-value=40 Score=30.16 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.6
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.+.|+..+++++++++|+.+.+.||+.
T Consensus 74 ll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 74 LLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred CCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 346888999999999999999999984
No 244
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=44.07 E-value=11 Score=31.26 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=7.5
Q ss_pred EEEcCCcccC
Q 028543 60 LFDIMDTIVR 69 (207)
Q Consensus 60 lFDLDGTLvD 69 (207)
+||+||||..
T Consensus 1 ~lDyDGTL~p 10 (235)
T PF02358_consen 1 FLDYDGTLAP 10 (235)
T ss_dssp EEE-TTTSS-
T ss_pred CcccCCccCC
Confidence 6999999998
No 245
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=44.02 E-value=22 Score=29.59 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=21.7
Q ss_pred chh-HHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDG-VEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pg-v~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.++ +.++++.+|+.|+.+++-||+.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~ 77 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGD 77 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 345 6899999999999999999984
No 246
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=43.90 E-value=56 Score=26.88 Aligned_cols=40 Identities=15% Similarity=-0.061 Sum_probs=27.9
Q ss_pred HHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccCeEE
Q 028543 139 VEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLSWTF 180 (207)
Q Consensus 139 v~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD~v~ 180 (207)
..++++ ++++|++++++|..+ .....+++.+++. ..|.++
T Consensus 20 ~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~-~~~~~I 60 (236)
T TIGR02471 20 FVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP-SPDVLI 60 (236)
T ss_pred HHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC-CCCEEE
Confidence 346676 688899999999976 5566666777774 344443
No 247
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=42.99 E-value=45 Score=29.45 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
+.|+..++++.+++.|+.+.+.||+.
T Consensus 66 l~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 66 ARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred ccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 45788999999999999999999984
No 248
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=42.95 E-value=15 Score=33.14 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=15.2
Q ss_pred CCCCCeEEEEcCCcccC
Q 028543 53 KRKLPILLFDIMDTIVR 69 (207)
Q Consensus 53 ~~~~~~IlFDLDGTLvD 69 (207)
..++++|-||+|.||+.
T Consensus 9 l~~i~~~GFDmDyTLa~ 25 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQ 25 (343)
T ss_pred cccCCEEEECccccccc
Confidence 36789999999999997
No 249
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=41.59 E-value=26 Score=30.83 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=23.8
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.+.|.+.++++.++++|..+.+.||+.
T Consensus 84 LL~pdl~eiv~~~~~~g~~v~l~TNG~ 110 (318)
T TIGR03470 84 LLHPEIDEIVRGLVARKKFVYLCTNAL 110 (318)
T ss_pred cccccHHHHHHHHHHcCCeEEEecCce
Confidence 355889999999999999999999985
No 250
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=41.47 E-value=1.1e+02 Score=25.50 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=23.7
Q ss_pred hHHHHHHHHhHCCCeEEEEcCcH-H---HHHH-HHHhCCcccccCeEEE
Q 028543 138 GVEELLHELKQSNYEMHAFTNYP-I---WYEI-IEDKLKISTYLSWTFC 181 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN~~-~---~~~~-il~~~~l~~yFD~v~~ 181 (207)
-+.+|+.-=..+|-+++-+|... . .... +.+.+.+..---.+|.
T Consensus 118 vA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~ 166 (237)
T COG3700 118 VARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFA 166 (237)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeec
Confidence 44555555556788888888842 1 2222 3355666443333443
No 251
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=40.09 E-value=19 Score=32.56 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=13.3
Q ss_pred CCeEEEEcCCcccCC
Q 028543 56 LPILLFDIMDTIVRD 70 (207)
Q Consensus 56 ~~~IlFDLDGTLvD~ 70 (207)
.++++||-||||+.+
T Consensus 2 ~k~l~lDrDgtl~~~ 16 (354)
T PRK05446 2 QKILFIDRDGTLIEE 16 (354)
T ss_pred CcEEEEeCCCCccCC
Confidence 479999999999985
No 252
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=38.92 E-value=59 Score=23.10 Aligned_cols=37 Identities=8% Similarity=-0.047 Sum_probs=26.3
Q ss_pred HHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccC
Q 028543 140 EELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLS 177 (207)
Q Consensus 140 ~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD 177 (207)
.++.+.++++|.++.++ |-+....++++..|+.++|.
T Consensus 61 ~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~~~~ 97 (106)
T TIGR02886 61 LGRYKKIKNEGGEVIVC-NVSPAVKRLFELSGLFKIIR 97 (106)
T ss_pred HHHHHHHHHcCCEEEEE-eCCHHHHHHHHHhCCceEEE
Confidence 46678888899888755 44445556668888888773
No 253
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=38.85 E-value=1.3e+02 Score=25.88 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHhHCCC-eEEEEcCcH
Q 028543 135 YLDGVEELLHELKQSNY-EMHAFTNYP 160 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~-kl~IlTN~~ 160 (207)
+.++..++++.+++.|+ .+.+.||+.
T Consensus 69 l~~~l~~iv~~l~~~g~~~v~i~TNG~ 95 (302)
T TIGR02668 69 LRKDLIEIIRRIKDYGIKDVSMTTNGI 95 (302)
T ss_pred cccCHHHHHHHHHhCCCceEEEEcCch
Confidence 45678889999998898 899999985
No 254
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=38.85 E-value=46 Score=28.56 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=22.1
Q ss_pred cchhH-HHHHHHHhHCCCeEEEEcCcH
Q 028543 135 YLDGV-EELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 135 ~~pgv-~elL~~Lk~~G~kl~IlTN~~ 160 (207)
+.++. .++++.+++.|+.+.+.||+.
T Consensus 138 l~~~~l~~l~~~~k~~g~~~~i~TnG~ 164 (295)
T TIGR02494 138 LQPEFALALLQACHERGIHTAVETSGF 164 (295)
T ss_pred chHHHHHHHHHHHHHcCCcEeeeCCCC
Confidence 45664 689999999999999999984
No 255
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=38.49 E-value=54 Score=33.92 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=33.2
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIS 173 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~ 173 (207)
.+.|++.+.++.|++.|+++.++|.-. .....+.+..|+.
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGII 686 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 457999999999999999999999975 4455566788885
No 256
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=38.34 E-value=37 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=22.2
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
-+.+.+.++.++++|.++..+||.+
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3678899999999999999999975
No 257
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=37.67 E-value=59 Score=30.28 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=31.2
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKI 172 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l 172 (207)
.+.|++.+.++.|++.|+++.++|..+.. ...+.+.+|+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi 386 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI 386 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc
Confidence 45799999999999999999999997643 4445566665
No 258
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=37.60 E-value=39 Score=24.77 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.-+.+.++++.+|++|.++..+|+.+
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34788999999999999999999974
No 259
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=37.37 E-value=55 Score=27.02 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCc
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKI 172 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l 172 (207)
..|++.++|+.+.+ .|.|+|-|.+. .+++.+++.+++
T Consensus 46 kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l~~ 83 (195)
T TIGR02245 46 MRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTELGV 83 (195)
T ss_pred eCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHhcc
Confidence 35999999999987 59999999985 566666666654
No 260
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=36.94 E-value=23 Score=30.28 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=13.2
Q ss_pred CCCeEEEEcCCcccC
Q 028543 55 KLPILLFDIMDTIVR 69 (207)
Q Consensus 55 ~~~~IlFDLDGTLvD 69 (207)
+.++++||+||||.+
T Consensus 157 ~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 157 LPKAVIFDIDGTLAK 171 (300)
T ss_pred CCCEEEEECCCcCcC
Confidence 457899999999998
No 261
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=36.77 E-value=75 Score=26.08 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=21.2
Q ss_pred cchh-HHHHHHHHhHCCCeEEEEcCc
Q 028543 135 YLDG-VEELLHELKQSNYEMHAFTNY 159 (207)
Q Consensus 135 ~~pg-v~elL~~Lk~~G~kl~IlTN~ 159 (207)
+.++ +.++++.+++.|+++.+.||+
T Consensus 78 l~~~~~~~li~~~~~~g~~~~i~TNG 103 (235)
T TIGR02493 78 LQPEFLSELFKACKELGIHTCLDTSG 103 (235)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 4456 458999999999999999999
No 262
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=36.67 E-value=35 Score=30.76 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhccccccccCCCCC--eEEEEcCCcccC--CChhchHHHH
Q 028543 43 MASLSGKENEKRKLP--ILLFDIMDTIVR--DPFYHDVPAF 79 (207)
Q Consensus 43 ~~~~~~~~~~~~~~~--~IlFDLDGTLvD--~~~~~~l~~~ 79 (207)
|.....+.+..+... ++.||+||||+. .+...+..++
T Consensus 20 ~~kf~~~~s~~ss~~~fgfafDIDGVL~RG~~~i~~~~~Al 60 (389)
T KOG1618|consen 20 MRKFISEISFESSPPTFGFAFDIDGVLFRGHRPIPGALKAL 60 (389)
T ss_pred hhhhhcccCCCCCCCceeEEEecccEEEecCCCCcchHHHH
No 263
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=36.34 E-value=1.1e+02 Score=22.45 Aligned_cols=25 Identities=8% Similarity=-0.051 Sum_probs=22.0
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
-+.+.+.++.++++|.++..+||.+
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCC
Confidence 4688899999999999999999974
No 264
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=35.00 E-value=63 Score=33.19 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=32.5
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIS 173 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~ 173 (207)
.+.|++.+.+++|+++|+++.++|.-. .....+.+.+|+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 608 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 457899999999999999999999965 4455566777774
No 265
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=34.10 E-value=42 Score=26.86 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=16.9
Q ss_pred HHHHHHHHhHCCCeEEEEcCc
Q 028543 139 VEELLHELKQSNYEMHAFTNY 159 (207)
Q Consensus 139 v~elL~~Lk~~G~kl~IlTN~ 159 (207)
+.++++.|+++||+++++=-.
T Consensus 19 ie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 19 IEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred HHHHHHHHHhCCcEEEEEEec
Confidence 356788999999999988554
No 266
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=34.05 E-value=60 Score=27.70 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=28.3
Q ss_pred CcchhHHHHHHHHhH-CCCeEEEEcCcH-HHHHHHHHhCC
Q 028543 134 AYLDGVEELLHELKQ-SNYEMHAFTNYP-IWYEIIEDKLK 171 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~-~G~kl~IlTN~~-~~~~~il~~~~ 171 (207)
.+-+.+.+.|+.|++ .|+.++|+|.-+ ..+..+++.++
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~ 75 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYR 75 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCccc
Confidence 455889999999998 699999999976 44544444433
No 267
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=32.42 E-value=69 Score=29.49 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHhHCCCeEEEE-cCcH
Q 028543 135 YLDGVEELLHELKQSNYEMHAF-TNYP 160 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~Il-TN~~ 160 (207)
.+|.+.++|+.+++.|+.++|. ||+.
T Consensus 87 ~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 87 CYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred cCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 4689999999999999999996 9963
No 268
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=32.02 E-value=26 Score=29.54 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=10.8
Q ss_pred eEEEEcCCcccC
Q 028543 58 ILLFDIMDTIVR 69 (207)
Q Consensus 58 ~IlFDLDGTLvD 69 (207)
.++||.||||.-
T Consensus 13 l~lfdvdgtLt~ 24 (252)
T KOG3189|consen 13 LCLFDVDGTLTP 24 (252)
T ss_pred EEEEecCCcccc
Confidence 789999999975
No 269
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=31.98 E-value=1.5e+02 Score=23.28 Aligned_cols=39 Identities=15% Similarity=0.007 Sum_probs=29.1
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEc
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCS 182 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S 182 (207)
-+.+.++++.+|++|.++..+||.+. ..+.++-|.++..
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~IT~~~~--------s~La~~aD~~l~~ 152 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIALTGRDG--------GKLLELADIEIHV 152 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCC--------CchhhhCCEEEEe
Confidence 47899999999999999999999732 2344556655543
No 270
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=31.83 E-value=67 Score=33.16 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=30.2
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIS 173 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~ 173 (207)
.+-||+.+.++.|++.|+++.++|.-. .....+....++.
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii 671 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLL 671 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCC
Confidence 456899999999999999999999854 3333444455553
No 271
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=31.46 E-value=1.3e+02 Score=30.73 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=42.3
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCcccccC--eEEEccccCCCCCChHHH
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKISTYLS--WTFCSCVIGMFSKQCLKE 195 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~yFD--~v~~S~evg~~KPdPeiy 195 (207)
.|.+++.+.++.|++.|+++-.+|.-. .....+-+..|+..--+ .++.+.+... ..+.+.+
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~-l~~~el~ 610 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDA-LSDEELA 610 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhh-cCHHHHH
Confidence 567999999999999999999999965 33445667788755442 3555555543 3333433
No 272
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=31.35 E-value=1.5e+02 Score=19.88 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=25.5
Q ss_pred HHHHHHhhc-CCCCCHHHHHHHHHhcCCcchhHHHHHHHHhHCCC
Q 028543 108 ELARKFFTD-GRPFDLEGLKICMKKGYAYLDGVEELLHELKQSNY 151 (207)
Q Consensus 108 e~~~~~~~~-g~~~~~~~l~~~~~~~~~~~pgv~elL~~Lk~~G~ 151 (207)
+++..+... |.+++..++.+.+-- .=-..+...|+.|.++||
T Consensus 13 ~~I~~~~~~~G~~Pt~rEIa~~~g~--~S~~tv~~~L~~Le~kG~ 55 (65)
T PF01726_consen 13 EFIREYIEENGYPPTVREIAEALGL--KSTSTVQRHLKALERKGY 55 (65)
T ss_dssp HHHHHHHHHHSS---HHHHHHHHTS--SSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCC--CChHHHHHHHHHHHHCcC
Confidence 444555544 777777777766541 112577888999999997
No 273
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=31.09 E-value=31 Score=29.63 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=11.9
Q ss_pred CCeEEEEcCCcccC
Q 028543 56 LPILLFDIMDTIVR 69 (207)
Q Consensus 56 ~~~IlFDLDGTLvD 69 (207)
...|+-|+||||++
T Consensus 7 ~~lIFtDlD~TLl~ 20 (274)
T COG3769 7 PLLIFTDLDGTLLP 20 (274)
T ss_pred ceEEEEcccCcccC
Confidence 35778899999998
No 274
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=31.04 E-value=74 Score=25.76 Aligned_cols=42 Identities=19% Similarity=0.072 Sum_probs=26.7
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHHH-HHHHHHhCCcccccCe
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPIW-YEIIEDKLKISTYLSW 178 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~~-~~~il~~~~l~~yFD~ 178 (207)
..+|.- ++-|.+.|++++|+|..... ...-.+.+|+..+|.+
T Consensus 38 v~DG~G--ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG 80 (170)
T COG1778 38 VRDGHG--IKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQG 80 (170)
T ss_pred ccCcHH--HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeec
Confidence 345542 45566789999999996533 3333467888666543
No 275
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=30.65 E-value=53 Score=28.17 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=22.7
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.+.+.++++.+|++|+.+++.||+-
T Consensus 98 ~e~~~~~~~~ake~Gl~~~l~TnG~ 122 (260)
T COG1180 98 AEFALDLLRAAKERGLHVALDTNGF 122 (260)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 4788999999999999999999983
No 276
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=30.61 E-value=53 Score=25.93 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=33.0
Q ss_pred cccCCCCCCcceeeecccccccCCCchhhhhhccccccccCCCCCeEEEEcCCcccCCChhchHHHHHcCC
Q 028543 13 PLKPSKTKPTRIMALNSSNKNKNMNPPTVAMASLSGKENEKRKLPILLFDIMDTIVRDPFYHDVPAFFGMS 83 (207)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlFDLDGTLvD~~~~~~l~~~~g~~ 83 (207)
+-.--|||.-.+|++. .|--+|..-+.-.+. +-++||+||-==. ...+-+...+|-.
T Consensus 54 pQiQykNP~VQ~~~~k----nmtpsPF~R~YlddG---------r~vL~Dld~~~r~-eI~~hl~K~lGKt 110 (169)
T KOG4079|consen 54 PQIQYKNPKVQLVKHK----NMTPSPFARAYLDDG---------REVLFDLDGMKRE-EIEKHLAKTLGKT 110 (169)
T ss_pred hhhcccCCceEEEeec----cCCCChHHHheecCc---------ceEEEEcccccHH-HHHHHHHHHhCcc
Confidence 3344578888887753 233367776666655 3699999885321 1222344445544
No 277
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.59 E-value=1.1e+02 Score=22.65 Aligned_cols=43 Identities=7% Similarity=-0.034 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHhHCCC---eEEEEcCcHHHHHHHHHhCCcccccC
Q 028543 135 YLDGVEELLHELKQSNY---EMHAFTNYPIWYEIIEDKLKISTYLS 177 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~---kl~IlTN~~~~~~~il~~~~l~~yFD 177 (207)
..+.+.++++.|+++|. ++.+.=+.+......+..+|++.+|+
T Consensus 63 ~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 63 HMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEC
Confidence 45677888999999855 44444344433223346788776665
No 278
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=30.31 E-value=27 Score=34.97 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=11.9
Q ss_pred CeEEEEcCCcccC
Q 028543 57 PILLFDIMDTIVR 69 (207)
Q Consensus 57 ~~IlFDLDGTLvD 69 (207)
++++||+||||+.
T Consensus 508 rll~LDyDGTL~~ 520 (797)
T PLN03063 508 RLLILGFYGTLTE 520 (797)
T ss_pred eEEEEecCccccC
Confidence 6899999999996
No 279
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=30.04 E-value=26 Score=32.36 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=34.2
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcHHHHHH-HHH-h--CCcccccCeEEEccccCCCCCCh
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYPIWYEI-IED-K--LKISTYLSWTFCSCVIGMFSKQC 192 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~~~~~~-il~-~--~~l~~yFD~v~~S~evg~~KPdP 192 (207)
+....+|..+++.|-++.++||..-.+.. ... . .+...|||.+++. ..||-+
T Consensus 201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~----a~Kp~f 256 (424)
T KOG2469|consen 201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETR----AAKPGF 256 (424)
T ss_pred CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEe----ccCCcc
Confidence 33444889999999999999998533222 221 1 3677889987754 355543
No 280
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=29.96 E-value=55 Score=27.26 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=21.8
Q ss_pred cchh-HHHHHHHHhHCCCeEEEEcCcH
Q 028543 135 YLDG-VEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 135 ~~pg-v~elL~~Lk~~G~kl~IlTN~~ 160 (207)
+.++ +.++++.+++.|+++++.||+.
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~ 109 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGF 109 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3455 4689999999999999999985
No 281
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=29.38 E-value=1.2e+02 Score=31.28 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=33.2
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCccc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKIST 174 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l~~ 174 (207)
.+.|++.+.++.|++.|+++.++|.-+ .....+.++.|+.+
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~ 697 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVN 697 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 457899999999999999999999975 44445667788853
No 282
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=29.05 E-value=1e+02 Score=20.99 Aligned_cols=38 Identities=3% Similarity=-0.045 Sum_probs=25.4
Q ss_pred HHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccC
Q 028543 139 VEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLS 177 (207)
Q Consensus 139 v~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD 177 (207)
..++.+.++++|..+.+ ++-+.....+++..|+.++|.
T Consensus 59 L~~l~~~~~~~g~~v~i-~~~~~~~~~~l~~~gl~~~~~ 96 (99)
T cd07043 59 LLGAYKRARAAGGRLVL-VNVSPAVRRVLELTGLDRLFP 96 (99)
T ss_pred HHHHHHHHHHcCCeEEE-EcCCHHHHHHHHHhCcceeee
Confidence 45677888888877554 444445666667888776654
No 283
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=29.00 E-value=52 Score=27.36 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=23.1
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.++..++++.|+++||++.+=||+.
T Consensus 85 ~~~l~~Ll~~l~~~g~~~~lETngt 109 (212)
T COG0602 85 QPNLLELLELLKRLGFRIALETNGT 109 (212)
T ss_pred cccHHHHHHHHHhCCceEEecCCCC
Confidence 4689999999999999999999985
No 284
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=28.73 E-value=1.2e+02 Score=24.80 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=30.3
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCccccc
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYL 176 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yF 176 (207)
++.+.+.+..|++.|+++.|++.+.......++.+++...+
T Consensus 19 ~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~ 59 (242)
T PF00696_consen 19 LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKF 59 (242)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSE
T ss_pred HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCccc
Confidence 45566667778888999999999876666666777765544
No 285
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=28.73 E-value=98 Score=21.51 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=25.0
Q ss_pred hHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcc
Q 028543 138 GVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKIS 173 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~ 173 (207)
-+.++++.|+++ ++..+-.++..++-+++.++|+.
T Consensus 27 sa~~If~~L~k~-~~~~l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 27 SAAEIFERLQKK-SPAALRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred cHHHHHHHHHHh-CccccccCCHHHHHHHHHHcCCC
Confidence 356788888887 67665455567788888888863
No 286
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=28.45 E-value=1.4e+02 Score=23.15 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=13.8
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
+.++.++=+.|++.|..+.++.+.+
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~ 76 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDP 76 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSH
T ss_pred HHHHHHHHHHHHhcCcceEEEecch
Confidence 3555555555666666666665554
No 287
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=28.34 E-value=61 Score=21.18 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=26.3
Q ss_pred HHHHHHhCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhcCCcchhHHHHHHHHhHCCC
Q 028543 95 AWIEFEMGMISEMELARKFFTDGRPFDLEGLKICMKKGYAYLDGVEELLHELKQSNY 151 (207)
Q Consensus 95 ~w~~~e~G~Is~~e~~~~~~~~g~~~~~~~l~~~~~~~~~~~pgv~elL~~Lk~~G~ 151 (207)
.|..+ .|..|.++..+.+.+.- +.+.+ .....+.++|..|+++|+
T Consensus 22 Iw~~~-~g~~t~~ei~~~l~~~y-~~~~~----------~~~~dv~~fl~~L~~~gl 66 (68)
T PF05402_consen 22 IWELL-DGPRTVEEIVDALAEEY-DVDPE----------EAEEDVEEFLEQLREKGL 66 (68)
T ss_dssp HHHH---SSS-HHHHHHHHHHHT-T--HH----------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHc-cCCCCHHHHHHHHHHHc-CCCHH----------HHHHHHHHHHHHHHHCcC
Confidence 58766 46678888887776541 12222 123577888999988874
No 288
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=28.16 E-value=34 Score=35.00 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=11.9
Q ss_pred CeEEEEcCCcccC
Q 028543 57 PILLFDIMDTIVR 69 (207)
Q Consensus 57 ~~IlFDLDGTLvD 69 (207)
++++||+||||+.
T Consensus 592 RLlfLDyDGTLap 604 (934)
T PLN03064 592 RLLILGFNATLTE 604 (934)
T ss_pred eEEEEecCceecc
Confidence 6899999999997
No 289
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=28.10 E-value=81 Score=28.53 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=25.1
Q ss_pred CcchhHHHHHHHHhHCC-CeEEEEcCcH
Q 028543 134 AYLDGVEELLHELKQSN-YEMHAFTNYP 160 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G-~kl~IlTN~~ 160 (207)
.++|||..+.+.|.+.| ..+.-+||+|
T Consensus 196 ~~ipGV~~~yr~l~~~~~apvfYvSnSP 223 (373)
T COG4850 196 QVIPGVSAWYRALTNLGDAPVFYVSNSP 223 (373)
T ss_pred CCCCCHHHHHHHHHhcCCCCeEEecCCh
Confidence 68999999999999988 8999999997
No 290
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=27.78 E-value=1.1e+02 Score=22.53 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=21.0
Q ss_pred HHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCc
Q 028543 139 VEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKI 172 (207)
Q Consensus 139 v~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l 172 (207)
...+-++|+++|+.|.++|+.. +....+..|+
T Consensus 15 ~lala~~L~~rGh~V~~~~~~~--~~~~v~~~Gl 46 (139)
T PF03033_consen 15 FLALARALRRRGHEVRLATPPD--FRERVEAAGL 46 (139)
T ss_dssp HHHHHHHHHHTT-EEEEEETGG--GHHHHHHTT-
T ss_pred HHHHHHHHhccCCeEEEeeccc--ceecccccCc
Confidence 3467889999999999999964 2222255665
No 291
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=27.59 E-value=68 Score=25.25 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.2
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
-+.+.++++.+|++|.++..+|+.+
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4678899999999999999999974
No 292
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.49 E-value=70 Score=22.21 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.7
Q ss_pred hHHHHHHHHhHCCCeEEEEcCcH
Q 028543 138 GVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.+.++++.|+++||++-+.|+..
T Consensus 54 ~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 54 ELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHCCCCeEECCCCH
Confidence 47888999999999998888764
No 293
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.99 E-value=83 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=21.8
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
-....+.++.+|++|.++.++|+..
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESST
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCC
Confidence 4678899999999999999999864
No 294
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=26.55 E-value=86 Score=20.63 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=16.4
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCc
Q 028543 137 DGVEELLHELKQSNYEMHAFTNY 159 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~ 159 (207)
|+-.+-|+.|.+.|.+|.|.|=.
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HH
T ss_pred cHHHHHHHHHHHCCCeEEecCcH
Confidence 45678899999999999998754
No 295
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=26.52 E-value=77 Score=23.49 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=17.1
Q ss_pred HHHHHHHhHCCCeEEEEcCcH
Q 028543 140 EELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 140 ~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.++++.|+++|+.+.++++..
T Consensus 19 ~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 19 LNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp HHHHHHHHHTT-EEEEEESS-
T ss_pred HHHHHHHHHCCCEEEEEEcCC
Confidence 578999999999999998863
No 296
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=26.43 E-value=83 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=21.7
Q ss_pred CcchhHHHHHHHHhHCCC-eEEEEcC
Q 028543 134 AYLDGVEELLHELKQSNY-EMHAFTN 158 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~-kl~IlTN 158 (207)
.++..+.++++.+++.|+ +++++||
T Consensus 96 ~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 96 VDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 467888999999999998 5999987
No 297
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=25.91 E-value=40 Score=31.51 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.1
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
.++++|-||+|-||+.
T Consensus 10 ~~i~~iGFDmDyTLa~ 25 (448)
T PF05761_consen 10 KDIDVIGFDMDYTLAR 25 (448)
T ss_dssp CC--EEEE-TBTTTBE
T ss_pred ccCCEEEECcccchhh
Confidence 6788999999999997
No 298
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.79 E-value=88 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=19.6
Q ss_pred chhHHHHHHHHhHCCCeEEEEc
Q 028543 136 LDGVEELLHELKQSNYEMHAFT 157 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlT 157 (207)
-+.+.++++.++++|.++..+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4678999999999999998888
No 299
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=25.57 E-value=32 Score=25.01 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=17.8
Q ss_pred hhHHHHHHHHhHCC--CeEEEEcCcH
Q 028543 137 DGVEELLHELKQSN--YEMHAFTNYP 160 (207)
Q Consensus 137 pgv~elL~~Lk~~G--~kl~IlTN~~ 160 (207)
+...++++.+++.+ ..+.+.||+.
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~ 90 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGT 90 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-ST
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCe
Confidence 56889999999998 9999999985
No 300
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.16 E-value=73 Score=27.08 Aligned_cols=31 Identities=10% Similarity=0.294 Sum_probs=25.3
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH--HHHHH
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP--IWYEI 165 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~--~~~~~ 165 (207)
-||...+++++|+++|+++.+..+-. +++..
T Consensus 64 ~Fpdp~~~i~~l~~~g~~~~~~~~P~v~~w~~~ 96 (265)
T cd06589 64 KFPNPKSMIDELHDNGVKLVLWIDPYIREWWAE 96 (265)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEeChhHHHHHHH
Confidence 57899999999999999999888853 44444
No 301
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=24.95 E-value=75 Score=29.42 Aligned_cols=16 Identities=31% Similarity=0.465 Sum_probs=14.5
Q ss_pred CCCCeEEEEcCCcccC
Q 028543 54 RKLPILLFDIMDTIVR 69 (207)
Q Consensus 54 ~~~~~IlFDLDGTLvD 69 (207)
.++.+|-||||+||+.
T Consensus 25 ~~i~~~GfdmDyTL~~ 40 (424)
T KOG2469|consen 25 ENIGIVGFDMDYTLAR 40 (424)
T ss_pred hcCcEEeeccccchhh
Confidence 6778999999999997
No 302
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.08 E-value=1.9e+02 Score=22.95 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=12.0
Q ss_pred HHHHHHhHCCCeEEEEcCcHHH
Q 028543 141 ELLHELKQSNYEMHAFTNYPIW 162 (207)
Q Consensus 141 elL~~Lk~~G~kl~IlTN~~~~ 162 (207)
++++.+.++|++++++-.++..
T Consensus 37 ~ll~~~~~~~~~v~llG~~~~~ 58 (171)
T cd06533 37 ALLELAAQKGLRVFLLGAKPEV 58 (171)
T ss_pred HHHHHHHHcCCeEEEECCCHHH
Confidence 4555555555666666555443
No 303
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.90 E-value=98 Score=22.39 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
+.+.++++.++++|.++.++|+..
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 668889999999999999999964
No 304
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=23.76 E-value=76 Score=28.22 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=20.6
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCc
Q 028543 137 DGVEELLHELKQSNYEMHAFTNY 159 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~ 159 (207)
|=+..+++.|+++|++++|+|-+
T Consensus 52 P~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 52 PLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred HHHHHHHHHHHhcCCceEEEcCC
Confidence 56788899999999999999985
No 305
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=23.73 E-value=52 Score=24.92 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=34.6
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCcccccCeEEEccccCCCC
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYLSWTFCSCVIGMFS 189 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yFD~v~~S~evg~~K 189 (207)
.++...++++.++++||++..+++...... .+.+.+-.=-+++++.-|..+
T Consensus 60 ~~~~~~~~l~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~lv~G~E~~Gls~ 110 (142)
T PF00588_consen 60 RVDDLEEALKDLKENGYTIVATSPGATPLY----ELDFPKKVALVFGNESRGLSE 110 (142)
T ss_dssp EESSHHHHHHHHHHTTEEEEEESTTSCEGG----GSHTTSSEEEEEEBTTTBS-H
T ss_pred eeehhhhhcccccccccccceeeecccccc----ccccccceEEEEcCcCCCCCc
Confidence 457888999999999999988888433222 222333444688888888753
No 306
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.61 E-value=1.2e+02 Score=26.05 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=22.7
Q ss_pred hHHHHHHHHhHCCCeEEEEcCcHHHHHHH
Q 028543 138 GVEELLHELKQSNYEMHAFTNYPIWYEII 166 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN~~~~~~~i 166 (207)
.++|++.+||++ |.+.|+|-...+..++
T Consensus 187 kIEeLi~eLk~~-yTIviVTHnmqQAaRv 214 (253)
T COG1117 187 KIEELITELKKK-YTIVIVTHNMQQAARV 214 (253)
T ss_pred HHHHHHHHHHhc-cEEEEEeCCHHHHHHH
Confidence 568999999965 9999999986655555
No 307
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=23.52 E-value=2e+02 Score=21.03 Aligned_cols=66 Identities=15% Similarity=-0.104 Sum_probs=36.7
Q ss_pred cchhHHHHHHHHhHC---CCeEEEEcCcHH---HHHHHHHhCCcccccCeEEEcccc------CCCCCChHHHHHhhhh
Q 028543 135 YLDGVEELLHELKQS---NYEMHAFTNYPI---WYEIIEDKLKISTYLSWTFCSCVI------GMFSKQCLKERGNLIL 201 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~---G~kl~IlTN~~~---~~~~il~~~~l~~yFD~v~~S~ev------g~~KPdPeiy~~~~~~ 201 (207)
..++..+++..+.+. ++++.+.||+.. ..-..+.+++.....-.+-+.++- + .+++++-+..++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~-~~~~~~~~~~~l~~ 135 (166)
T PF04055_consen 58 LHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN-RGKSFERVLEALER 135 (166)
T ss_dssp GSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS-STSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc-CCCCHHHHHHHHHH
Confidence 346666666666665 899999999852 222234566632222223323322 2 55666666666654
No 308
>PLN03190 aminophospholipid translocase; Provisional
Probab=23.13 E-value=1.5e+02 Score=31.33 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=29.0
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcCcH-HHHHHHHHhCCc
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTNYP-IWYEIIEDKLKI 172 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN~~-~~~~~il~~~~l 172 (207)
.+.+|+.+.++.|++.|+++.++|.-. .....+....++
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~L 765 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKL 765 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 467999999999999999999999954 333334333444
No 309
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.97 E-value=1.1e+02 Score=22.47 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=21.5
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
-+.+.+.++.++++|.++..+|+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4688899999999999999999754
No 310
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.45 E-value=97 Score=17.57 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=11.9
Q ss_pred HHHhCCCCHHHHHHH
Q 028543 98 EFEMGMISEMELARK 112 (207)
Q Consensus 98 ~~e~G~Is~~e~~~~ 112 (207)
.+++|.||+++|-+.
T Consensus 11 l~~~G~IseeEy~~~ 25 (31)
T PF09851_consen 11 LYDKGEISEEEYEQK 25 (31)
T ss_pred HHHcCCCCHHHHHHH
Confidence 467899999888764
No 311
>PRK15482 transcriptional regulator MurR; Provisional
Probab=22.30 E-value=2.1e+02 Score=24.37 Aligned_cols=26 Identities=8% Similarity=-0.003 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 135 YLDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
.-+.+.++++.++++|.++..+|+.+
T Consensus 194 ~t~~~~~~~~~a~~~g~~iI~IT~~~ 219 (285)
T PRK15482 194 SKKEIVLCAEAARKQGATVIAITSLA 219 (285)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35788999999999999999999974
No 312
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=22.23 E-value=1.2e+02 Score=21.42 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=13.1
Q ss_pred hHHHHHHHHhHCCCeEEEEcC
Q 028543 138 GVEELLHELKQSNYEMHAFTN 158 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN 158 (207)
|+.++.+.|.+.||+++.-..
T Consensus 1 e~~~~a~~l~~lG~~i~AT~g 21 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIYATEG 21 (95)
T ss_dssp THHHHHHHHHHTTSEEEEEHH
T ss_pred CHHHHHHHHHHCCCEEEEChH
Confidence 356667777777777654433
No 313
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=22.00 E-value=1.7e+02 Score=25.69 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHhHCCC--eEEEEcCcH
Q 028543 135 YLDGVEELLHELKQSNY--EMHAFTNYP 160 (207)
Q Consensus 135 ~~pgv~elL~~Lk~~G~--kl~IlTN~~ 160 (207)
+.++..++++.+++.+. .+.+.||+.
T Consensus 74 lr~dl~~li~~i~~~~~l~~i~itTNG~ 101 (329)
T PRK13361 74 VRRGCDQLVARLGKLPGLEELSLTTNGS 101 (329)
T ss_pred ccccHHHHHHHHHhCCCCceEEEEeChh
Confidence 45788899999988763 789999985
No 314
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=21.35 E-value=1.1e+02 Score=20.32 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=19.4
Q ss_pred eEEEEcCCcccCCChhchHHHHHcCCHHHH
Q 028543 58 ILLFDIMDTIVRDPFYHDVPAFFGMSMKEL 87 (207)
Q Consensus 58 ~IlFDLDGTLvD~~~~~~l~~~~g~~~~~~ 87 (207)
.+++|.||+++. ...++.+++|.+.+++
T Consensus 4 i~i~d~~g~i~~--~N~~~~~~~g~~~~~~ 31 (104)
T PF13426_consen 4 IFILDPDGRILY--VNPAFERLFGYSREEL 31 (104)
T ss_dssp EEEEETTSBEEE--E-HHHHHHHTS-HHHH
T ss_pred EEEECCcCcEEe--hhHHHHHHHCcCHHHH
Confidence 578999999987 3445666777776655
No 315
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.31 E-value=1.1e+02 Score=24.21 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.2
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
-+.+.++++.++++|.++..+|+.+
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~ 112 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNP 112 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4788899999999999999999964
No 316
>PRK13937 phosphoheptose isomerase; Provisional
Probab=21.26 E-value=1e+02 Score=24.72 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=22.3
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
-+.+.+.++.+|++|.++..+|+.+
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4788999999999999999999964
No 317
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=21.25 E-value=1.3e+02 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=8.0
Q ss_pred HHHHHHHhHCCCeEE
Q 028543 140 EELLHELKQSNYEMH 154 (207)
Q Consensus 140 ~elL~~Lk~~G~kl~ 154 (207)
.++++.|++.||+++
T Consensus 3 ~~~~~~l~~lG~~i~ 17 (90)
T smart00851 3 VELAKRLAELGFELV 17 (90)
T ss_pred HHHHHHHHHCCCEEE
Confidence 344555555565554
No 318
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=20.99 E-value=29 Score=19.97 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=7.9
Q ss_pred Cchhhhhhccc
Q 028543 37 NPPTVAMASLS 47 (207)
Q Consensus 37 ~~~~~~~~~~~ 47 (207)
-||.|||+.--
T Consensus 9 cpp~ccmgl~c 19 (33)
T PF08094_consen 9 CPPQCCMGLRC 19 (33)
T ss_dssp SSSSB-TTEEE
T ss_pred CCchheeeeee
Confidence 48899998765
No 319
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.98 E-value=98 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.6
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTN 158 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN 158 (207)
..||+..+++++|+++|+++.+..+
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 3579999999999999999987665
No 320
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.89 E-value=1.8e+02 Score=20.77 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=27.3
Q ss_pred hHHHHHHHHhHCCCeEEEEcCcHHHHHHHHHhCCccccc
Q 028543 138 GVEELLHELKQSNYEMHAFTNYPIWYEIIEDKLKISTYL 176 (207)
Q Consensus 138 gv~elL~~Lk~~G~kl~IlTN~~~~~~~il~~~~l~~yF 176 (207)
...++.+.++++|.++.++.- .......++..|+.+.+
T Consensus 68 ~L~~~~~~~~~~g~~~~l~~~-~~~v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 68 ALVDIIKELRRRGVQLVLVGL-NPDVRRILERSGLIDFI 105 (117)
T ss_dssp HHHHHHHHHHHTTCEEEEESH-HHHHHHHHHHTTGHHHS
T ss_pred HHHHHHHHHHHCCCEEEEEEC-CHHHHHHHHHcCCChhc
Confidence 446778899999988766544 44444556888888877
No 321
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=20.79 E-value=1e+02 Score=27.27 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.1
Q ss_pred hhHHHHHHHHhHCCCeEEEEcC
Q 028543 137 DGVEELLHELKQSNYEMHAFTN 158 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN 158 (207)
|=+..+.+.|+++|++++|+|=
T Consensus 45 P~v~~La~~l~~~G~~~~IlSR 66 (311)
T TIGR00682 45 PVVVWLAELLKDRGLRVGVLSR 66 (311)
T ss_pred HHHHHHHHHHHHCCCEEEEECC
Confidence 5567888999999999999994
No 322
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=20.67 E-value=1.9e+02 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHhH-CCC-eEEEEcCcH
Q 028543 135 YLDGVEELLHELKQ-SNY-EMHAFTNYP 160 (207)
Q Consensus 135 ~~pgv~elL~~Lk~-~G~-kl~IlTN~~ 160 (207)
+.+++.++++.+++ .|+ .+.+.||+.
T Consensus 72 l~~~l~~li~~i~~~~gi~~v~itTNG~ 99 (334)
T TIGR02666 72 LRKDLVELVARLAALPGIEDIALTTNGL 99 (334)
T ss_pred ccCCHHHHHHHHHhcCCCCeEEEEeCch
Confidence 45788889998887 578 899999985
No 323
>COG2810 Predicted type IV restriction endonuclease [Defense mechanisms]
Probab=20.67 E-value=74 Score=27.50 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.6
Q ss_pred hhHHHHHHHHhHCCCeEEEEcCcHHH
Q 028543 137 DGVEELLHELKQSNYEMHAFTNYPIW 162 (207)
Q Consensus 137 pgv~elL~~Lk~~G~kl~IlTN~~~~ 162 (207)
-.+.+++.+.-..|.+++|+||+..|
T Consensus 84 kd~qq~~~Yav~~Gv~~~iVtnGrvW 109 (284)
T COG2810 84 KDVQQLAKYAVDKGVEVGIVTNGRVW 109 (284)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCeEE
Confidence 46678899999999999999999655
No 324
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.56 E-value=99 Score=26.93 Aligned_cols=25 Identities=4% Similarity=0.274 Sum_probs=21.8
Q ss_pred CcchhHHHHHHHHhHCCCeEEEEcC
Q 028543 134 AYLDGVEELLHELKQSNYEMHAFTN 158 (207)
Q Consensus 134 ~~~pgv~elL~~Lk~~G~kl~IlTN 158 (207)
.-||+..+++++|+++|+++++..+
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEEC
Confidence 3578999999999999999998666
No 325
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=20.09 E-value=1.2e+02 Score=23.47 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=22.1
Q ss_pred chhHHHHHHHHhHCCCeEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNYEMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~kl~IlTN~~ 160 (207)
-+.+.+.++.+|++|.++..+|+.+
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4788899999999999999999863
No 326
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=20.07 E-value=1.3e+02 Score=22.22 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.2
Q ss_pred chhHHHHHHHHhHCCC-eEEEEcCcH
Q 028543 136 LDGVEELLHELKQSNY-EMHAFTNYP 160 (207)
Q Consensus 136 ~pgv~elL~~Lk~~G~-kl~IlTN~~ 160 (207)
.+.+.++++.+++++. ++.+.||+.
T Consensus 69 ~~~l~~i~~~~k~~~~~~~~~~tng~ 94 (139)
T PF13353_consen 69 YDELLEILKYIKEKFPKKIIILTNGY 94 (139)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEETT-
T ss_pred HhHHHHHHHHHHHhCCCCeEEEECCC
Confidence 5899999999999988 799999984
No 327
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=20.05 E-value=2.3e+02 Score=18.50 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=25.9
Q ss_pred HHHHHHHhhc---CCCCCHHHHHHHHHhcCCcchhHHHHHHHHhHCCCe
Q 028543 107 MELARKFFTD---GRPFDLEGLKICMKKGYAYLDGVEELLHELKQSNYE 152 (207)
Q Consensus 107 ~e~~~~~~~~---g~~~~~~~l~~~~~~~~~~~pgv~elL~~Lk~~G~k 152 (207)
+++++.++.. +......++.+.+. .. -|-+-+.+++|.+.|+-
T Consensus 7 e~YL~~Iy~l~~~~~~v~~~~iA~~L~--vs-~~tvt~ml~~L~~~GlV 52 (60)
T PF01325_consen 7 EDYLKAIYELSEEGGPVRTKDIAERLG--VS-PPTVTEMLKRLAEKGLV 52 (60)
T ss_dssp HHHHHHHHHHHHCTSSBBHHHHHHHHT--S--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHC--CC-hHHHHHHHHHHHHCCCE
Confidence 4555544432 34445555655544 12 26788999999999974
Done!