BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028545
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZPT|X Chain X, Crystal Structure Of Mouse Sulfotransferase Sult1d1
           Complex With Pap
 pdb|2ZVP|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
           Msult1d1 Complex With Pap And P-Nitrophenol
 pdb|2ZVQ|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
           Msult1d1 Complex With Pap And Alpha-naphthol
 pdb|2ZYT|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
           Msult1d1 Complex With Paps
 pdb|2ZYU|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
           Msult1d1 Complex With Paps And P-Nitrophenyl Sulfate
 pdb|2ZYV|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
           Msult1d1 Complex With PapsPAP AND P-Nitrophenol
 pdb|2ZYW|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
           Msult1d1 Complex With Pap And P-Nitrophenol, Obtained By
           Two-Step Soaking Method
          Length = 295

 Score = 26.6 bits (57), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 161 VLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKI 196
           +LY  ++D  +   C+IQ++++   + I E +L KI
Sbjct: 188 ILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKI 223


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,874,581
Number of Sequences: 62578
Number of extensions: 152023
Number of successful extensions: 318
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 1
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)