Query 028545
Match_columns 207
No_of_seqs 110 out of 517
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 13:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 4.8E-48 1E-52 322.6 21.0 197 7-203 29-229 (230)
2 PF02453 Reticulon: Reticulon; 100.0 3.3E-38 7.2E-43 251.6 -7.4 163 21-183 1-169 (169)
3 PF04842 DUF639: Plant protein 97.4 0.0027 5.9E-08 60.5 12.4 163 20-202 505-677 (683)
4 KOG1792 Reticulon [Intracellul 95.4 0.07 1.5E-06 45.1 7.3 79 113-191 42-143 (230)
5 PF08372 PRT_C: Plant phosphor 93.3 0.7 1.5E-05 36.8 8.3 66 100-165 71-136 (156)
6 PF06398 Pex24p: Integral pero 92.1 2 4.3E-05 38.2 10.7 23 20-42 31-53 (359)
7 PF08372 PRT_C: Plant phosphor 88.2 0.3 6.6E-06 38.8 1.8 26 18-43 82-107 (156)
8 PF10112 Halogen_Hydrol: 5-bro 75.6 24 0.00052 28.6 8.5 73 127-200 15-98 (199)
9 COG0053 MMT1 Predicted Co/Zn/C 60.2 1.2E+02 0.0026 26.5 11.8 117 55-172 84-210 (304)
10 PF01484 Col_cuticle_N: Nemato 58.0 43 0.00093 20.8 6.2 34 153-186 15-51 (53)
11 KOG1726 HVA22/DP1 gene product 57.7 1.1E+02 0.0024 25.8 9.0 30 164-193 94-123 (225)
12 PF10256 Erf4: Golgin subfamil 54.0 86 0.0019 23.1 8.2 20 91-114 30-49 (118)
13 KOG3488 Dolichol phosphate-man 53.9 32 0.00069 23.8 4.2 35 113-147 38-72 (81)
14 PF02453 Reticulon: Reticulon; 53.1 4.9 0.00011 31.3 0.2 23 20-42 99-121 (169)
15 PF01594 UPF0118: Domain of un 49.9 1.7E+02 0.0036 25.1 11.6 16 132-147 130-145 (327)
16 PF04842 DUF639: Plant protein 49.6 2.5E+02 0.0054 27.7 11.0 34 105-138 497-530 (683)
17 PF11696 DUF3292: Protein of u 47.4 67 0.0015 31.3 6.8 49 94-142 95-143 (642)
18 PF13198 DUF4014: Protein of u 47.1 80 0.0017 21.8 5.3 35 148-182 33-67 (72)
19 COG5038 Ca2+-dependent lipid-b 43.2 34 0.00073 35.4 4.3 78 32-115 157-234 (1227)
20 PF07234 DUF1426: Protein of u 41.7 1.1E+02 0.0024 22.5 5.7 38 120-163 5-42 (117)
21 KOG1889 Putative phosphoinosit 39.9 94 0.002 29.7 6.4 83 5-87 483-575 (579)
22 PRK11677 hypothetical protein; 39.4 1.5E+02 0.0033 22.9 6.6 9 166-174 48-56 (134)
23 PHA02677 hypothetical protein; 33.6 1.2E+02 0.0025 22.6 4.8 33 145-177 5-37 (108)
24 PF13677 MotB_plug: Membrane M 32.7 1.1E+02 0.0024 19.9 4.3 28 138-165 17-44 (58)
25 PF03037 KMP11: Kinetoplastid 28.6 1.4E+02 0.0031 20.7 4.3 32 162-193 47-78 (90)
26 PF11696 DUF3292: Protein of u 25.8 48 0.001 32.2 2.1 26 21-46 115-140 (642)
27 COG5038 Ca2+-dependent lipid-b 25.0 3.5E+02 0.0076 28.4 8.0 49 124-174 159-207 (1227)
28 COG2383 Uncharacterized conser 24.3 1.6E+02 0.0035 21.8 4.1 49 152-200 45-96 (109)
29 COG3887 Predicted signaling pr 23.7 7E+02 0.015 24.4 10.3 57 139-199 31-87 (655)
30 KOG3873 Sphingomyelinase famil 22.7 5.4E+02 0.012 23.6 8.0 57 122-178 341-400 (422)
31 TIGR01710 typeII_sec_gspG gene 22.5 3.4E+02 0.0074 20.4 6.7 21 147-167 11-31 (134)
32 KOG1733 Mitochondrial import i 22.5 1.2E+02 0.0025 22.0 3.1 20 177-196 31-50 (97)
33 PRK02654 putative inner membra 22.3 3.9E+02 0.0085 24.2 7.0 38 132-169 13-53 (375)
34 PRK06433 NADH dehydrogenase su 21.7 3E+02 0.0066 19.5 5.9 47 24-70 22-72 (88)
35 TIGR00954 3a01203 Peroxysomal 20.9 7.7E+02 0.017 23.9 14.3 11 156-166 257-267 (659)
36 COG2177 FtsX Cell division pro 20.4 5.5E+02 0.012 22.5 7.5 56 114-171 146-201 (297)
37 COG2165 PulG Type II secretory 20.3 3.4E+02 0.0074 19.6 6.6 41 146-186 17-58 (149)
38 PHA03419 E4 protein; Provision 20.2 2.2E+02 0.0048 23.5 4.6 27 163-189 171-197 (200)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-48 Score=322.57 Aligned_cols=197 Identities=48% Similarity=0.852 Sum_probs=190.6
Q ss_pred CCccccccccCCCccceeeeccccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhhCC-CCC-
Q 028545 7 YDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNR-PLP- 84 (207)
Q Consensus 7 ~~~~~~~~~lg~~~v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~is~~s~~~l~~l~~~fl~~~~~~~~~~-~~~- 84 (207)
+|++|+|+.+|||+++|+++|||++.||.+|++.+++|++|+..+|+.+++.|+++++.+.+.|.|.+...+++| +.|
T Consensus 29 ~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~ 108 (230)
T KOG1792|consen 29 GREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPG 108 (230)
T ss_pred CCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999888887 555
Q ss_pred -CCC-ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 028545 85 -PLP-DLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVL 162 (207)
Q Consensus 85 -~~~-~~~isee~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~l 162 (207)
+.| ++++|||.+++.+++++..+|+.+.++|++++++|+.+++|+.+++|+++++|+|||+.|++|+|++++||+|.+
T Consensus 109 ~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~ 188 (230)
T KOG1792|consen 109 AYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVL 188 (230)
T ss_pred ccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch
Confidence 567 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 028545 163 YEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPLPQNKQ 203 (207)
Q Consensus 163 Y~~~q~~ID~~v~~~~~~~~~~~~~~~~k~~~kip~~~~~~ 203 (207)
||+|||+||++++++.++.+++|+++++|+.+|||+++.++
T Consensus 189 YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~ 229 (230)
T KOG1792|consen 189 YEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK 229 (230)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 99999999999999999999999999999999999987654
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=3.3e-38 Score=251.63 Aligned_cols=163 Identities=39% Similarity=0.722 Sum_probs=47.1
Q ss_pred cceeeeccccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCC------CCCCceeeCHH
Q 028545 21 VADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPL------PPLPDLEISDQ 94 (207)
Q Consensus 21 v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~is~~s~~~l~~l~~~fl~~~~~~~~~~~~------~~~~~~~isee 94 (207)
|+|+++||||++||.+|++++++|+++++.++|++|++|+++++.+++.+++....+++++.+ ++.++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 689999999999999999999999999999999999999999999999888887777766644 33357889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 028545 95 SVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKL 174 (207)
Q Consensus 95 ~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~~q~~ID~~v 174 (207)
.++++++.+.+.+|..++.+|+++.++|+..|+++++++|+++++|+++|++||++++++++||+|++||+||++||+++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~ 160 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV 160 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028545 175 CKIQRVIQM 183 (207)
Q Consensus 175 ~~~~~~~~~ 183 (207)
+++++++|+
T Consensus 161 ~~~~~~~~k 169 (169)
T PF02453_consen 161 AKVKEKVKK 169 (169)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 999988874
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=97.39 E-value=0.0027 Score=60.55 Aligned_cols=163 Identities=17% Similarity=0.247 Sum_probs=106.1
Q ss_pred ccceeeeccccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhhCCC--------CCCCC--ce
Q 028545 20 SVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRP--------LPPLP--DL 89 (207)
Q Consensus 20 ~v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~is~~s~~~l~~l~~~fl~~~~~~~~~~~--------~~~~~--~~ 89 (207)
.+.++..|+||.+|..+++....+ .+ ...+.-+.-..++.+++..+|.....-.++. +|+.. +-
T Consensus 505 ~~~~l~~We~P~kt~~Fl~~~~~i---I~---r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEq 578 (683)
T PF04842_consen 505 WLQKLASWEEPLKTLVFLALFLYI---IY---RGWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQ 578 (683)
T ss_pred HHHHHhhccCcchhHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHH
Confidence 477899999999997777665542 21 2223333333334444444554432122221 22211 11
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhchhH
Q 028545 90 EISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDH 169 (207)
Q Consensus 90 ~isee~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~~q~~ 169 (207)
.+.-..+..-++......|-++-++|.|++...+..+-++++.+..++.+-..+++--++...++-.||-..=+.+
T Consensus 579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr---- 654 (683)
T PF04842_consen 579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR---- 654 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch----
Confidence 1222334445677888899999999999999999999999999999999999999999999999999986432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 028545 170 IDEKLCKIQRVIQMQYRKIDESLLKKIPLPQNK 202 (207)
Q Consensus 170 ID~~v~~~~~~~~~~~~~~~~k~~~kip~~~~~ 202 (207)
.-.++..+.+++.+. .||-.|..
T Consensus 655 --~s~er~~RRlrEWW~--------sIPAaPV~ 677 (683)
T PF04842_consen 655 --ESSERFNRRLREWWD--------SIPAAPVQ 677 (683)
T ss_pred --hhHHHHHHHHHHHHh--------hCCccceE
Confidence 112445556677776 78877654
No 4
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=0.07 Score=45.07 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=67.1
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-----------------------hhH
Q 028545 113 IARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKF-----------------------QDH 169 (207)
Q Consensus 113 ~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~~-----------------------q~~ 169 (207)
...++++|||.+.+..++.+..++..+-..++..++..+..+.+++++.++.++ ||+
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 456999999999999999999999999888999999888888888888777665 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028545 170 IDEKLCKIQRVIQMQYRKIDES 191 (207)
Q Consensus 170 ID~~v~~~~~~~~~~~~~~~~k 191 (207)
++++...++.++|...+++++-
T Consensus 122 ~~~~a~~~~~~in~~l~~l~~i 143 (230)
T KOG1792|consen 122 VLALASSLRVEINQALSELRDI 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888877763
No 5
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=93.28 E-value=0.7 Score=36.78 Aligned_cols=66 Identities=17% Similarity=0.037 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 028545 100 ADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEK 165 (207)
Q Consensus 100 ~~~v~~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~ 165 (207)
++.+...+....+.++.++.++|+..|..+++++++.+.+--...+..++.+..+-.|+=|++-..
T Consensus 71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~ 136 (156)
T PF08372_consen 71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNP 136 (156)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCC
Confidence 455556667778899999999999999999999999988888888888887777777777777653
No 6
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=92.12 E-value=2 Score=38.24 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=17.3
Q ss_pred ccceeeeccccCchhHHHHHHHH
Q 028545 20 SVADVLLWRKRCGGVVLLGSSTI 42 (207)
Q Consensus 20 ~v~dlllWrd~~~Sg~vf~~~~~ 42 (207)
.+.++++|+||..+-.++...+.
T Consensus 31 ~vl~il~W~~p~~t~~~L~l~t~ 53 (359)
T PF06398_consen 31 RVLRILTWTNPDYTLSFLLLYTF 53 (359)
T ss_pred HHHHeEEeCCCCcchHHHHHHHH
Confidence 46789999999988666555443
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=88.23 E-value=0.3 Score=38.83 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCccceeeeccccCchhHHHHHHHHH
Q 028545 18 GGSVADVLLWRKRCGGVVLLGSSTIL 43 (207)
Q Consensus 18 ~~~v~dlllWrd~~~Sg~vf~~~~~~ 43 (207)
|+++..++.||||..|++..++.+++
T Consensus 82 gERl~allsWrdP~aT~lf~~~clv~ 107 (156)
T PF08372_consen 82 GERLQALLSWRDPRATALFVVFCLVA 107 (156)
T ss_pred HHHHHHhhccCCccHHHHHHHHHHHH
Confidence 45799999999999999888776664
No 8
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=75.63 E-value=24 Score=28.65 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 028545 127 LQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHI-----------DEKLCKIQRVIQMQYRKIDESLLKK 195 (207)
Q Consensus 127 lk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~~q~~I-----------D~~v~~~~~~~~~~~~~~~~k~~~k 195 (207)
.-+++..|++++.|.-.+++--+.++.++.+.+.....+++..- .+++....++.+++++++++ ...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~~-~~~~ 93 (199)
T PF10112_consen 15 VLIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIEK-AIKR 93 (199)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34455666666666555666555556555555554444332211 12344455555555566665 5557
Q ss_pred CCCCC
Q 028545 196 IPLPQ 200 (207)
Q Consensus 196 ip~~~ 200 (207)
|+...
T Consensus 94 i~~~~ 98 (199)
T PF10112_consen 94 IRDLE 98 (199)
T ss_pred cCCHH
Confidence 77644
No 9
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=60.16 E-value=1.2e+02 Score=26.54 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCce--------eeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHH
Q 028545 55 LSFVSNVLLLLVAILFFWGKSASLLNRPLPPLPDL--------EISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRF 126 (207)
Q Consensus 55 is~~s~~~l~~l~~~fl~~~~~~~~~~~~~~~~~~--------~isee~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~s 126 (207)
.+++.-++++..++..+|......++..+++.+.. .+..+.+.+....+....|.-.......-.--|...+
T Consensus 84 ~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts 163 (304)
T COG0053 84 ASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTS 163 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHH
Confidence 44444444444445556666666665333332211 1233445555555555555554444444444488888
Q ss_pred HHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH-HHHHhchhHHHH
Q 028545 127 LQVAFLLWVVSYVG-SVFNFLTLVYIGVLLSLSVP-VLYEKFQDHIDE 172 (207)
Q Consensus 127 lk~~~~l~~ls~lg-~~~s~~tLl~i~~~~~FtvP-~lY~~~q~~ID~ 172 (207)
+.+++++. ..+.| .|++...=+.+++....+.- .+++.-++.+|+
T Consensus 164 ~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~ 210 (304)
T COG0053 164 LAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDA 210 (304)
T ss_pred HHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88888877 77777 55665555555554444443 555555555553
No 10
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=57.98 E-value=43 Score=20.78 Aligned_cols=34 Identities=18% Similarity=0.508 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHH
Q 028545 153 VLLSLSVPVLYEK---FQDHIDEKLCKIQRVIQMQYR 186 (207)
Q Consensus 153 ~~~~FtvP~lY~~---~q~~ID~~v~~~~~~~~~~~~ 186 (207)
+.+++++|.+|.. -+++++.-++..+...++.++
T Consensus 15 ~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W~ 51 (53)
T PF01484_consen 15 LSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDAWN 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999864 445555555666666665554
No 11
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=57.71 E-value=1.1e+02 Score=25.79 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=21.6
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028545 164 EKFQDHIDEKLCKIQRVIQMQYRKIDESLL 193 (207)
Q Consensus 164 ~~~q~~ID~~v~~~~~~~~~~~~~~~~k~~ 193 (207)
.+||++||+.+.++++..-++...+-.|.+
T Consensus 94 s~~E~eid~~l~~~k~~~~~~a~~~~~r~l 123 (225)
T KOG1726|consen 94 SKHEEEIDRMLVEAKERVYDAAVSILKRAL 123 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999998877665555444433
No 12
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=54.00 E-value=86 Score=23.06 Aligned_cols=20 Identities=35% Similarity=0.280 Sum_probs=13.7
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHH
Q 028545 91 ISDQSVVKAADEIQVWVNHALSIA 114 (207)
Q Consensus 91 isee~v~~~~~~v~~~in~~l~~~ 114 (207)
||++..+ .+...+|..+.+.
T Consensus 30 is~~ef~----~iI~~IN~~l~~a 49 (118)
T PF10256_consen 30 ISPEEFE----EIINTINQILKEA 49 (118)
T ss_pred CCHHHHH----HHHHHHHHHHHHH
Confidence 7888777 5566777766554
No 13
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=53.89 E-value=32 Score=23.76 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=29.1
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHH
Q 028545 113 IARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLT 147 (207)
Q Consensus 113 ~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~t 147 (207)
..+..++-+++..++-++++++.+..+|-++|...
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34578888999999999999999999998777543
No 14
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=53.06 E-value=4.9 Score=31.26 Aligned_cols=23 Identities=4% Similarity=-0.065 Sum_probs=12.5
Q ss_pred ccceeeeccccCchhHHHHHHHH
Q 028545 20 SVADVLLWRKRCGGVVLLGSSTI 42 (207)
Q Consensus 20 ~v~dlllWrd~~~Sg~vf~~~~~ 42 (207)
...+++.||||..|..++++..+
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~l~~ 121 (169)
T PF02453_consen 99 WLRRLVFGEDPKKSLKVFVVLYI 121 (169)
T ss_dssp HHHCCCHCT-TTGGG--------
T ss_pred HHHHHHcCccHHHHHHHHHHHHH
Confidence 47899999999999887665544
No 15
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=49.85 E-value=1.7e+02 Score=25.09 Aligned_cols=16 Identities=38% Similarity=0.671 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhhHHHH
Q 028545 132 LLWVVSYVGSVFNFLT 147 (207)
Q Consensus 132 ~l~~ls~lg~~~s~~t 147 (207)
.-++.+..++..+...
T Consensus 130 ~~~~~~~~~~~~~~l~ 145 (327)
T PF01594_consen 130 LSSLSSFISSIFSFLF 145 (327)
T ss_pred HHHHHHHHHhhhhHHH
Confidence 3344444444444333
No 16
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=49.55 E-value=2.5e+02 Score=27.68 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 028545 105 VWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSY 138 (207)
Q Consensus 105 ~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~ 138 (207)
.-+.....+++.+..|||+..|+.++++.+.+-+
T Consensus 497 ~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~ 530 (683)
T PF04842_consen 497 FPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIY 530 (683)
T ss_pred ccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Confidence 3346677899999999999999887755554433
No 17
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=47.36 E-value=67 Score=31.26 Aligned_cols=49 Identities=6% Similarity=0.012 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhh
Q 028545 94 QSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSV 142 (207)
Q Consensus 94 e~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~lg~~ 142 (207)
..++++--.+...+-.+...+.|+=+|++.+.+..++++.++.+++.-.
T Consensus 95 a~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll 143 (642)
T PF11696_consen 95 ANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLL 143 (642)
T ss_pred HHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 4566666667777888889999999999999998777655555544443
No 18
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=47.10 E-value=80 Score=21.76 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 028545 148 LVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQ 182 (207)
Q Consensus 148 Ll~i~~~~~FtvP~lY~~~q~~ID~~v~~~~~~~~ 182 (207)
.+.+...+..++-.+.|+|.+.+-...+....+++
T Consensus 33 pll~~~~i~~~~E~l~e~Y~~~~w~~F~~Lhnkin 67 (72)
T PF13198_consen 33 PLLFVWIIGKIIEPLFELYKDWFWNPFNALHNKIN 67 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccc
Confidence 34445555666666667776666655555555444
No 19
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=43.19 E-value=34 Score=35.43 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHH
Q 028545 32 GGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHAL 111 (207)
Q Consensus 32 ~Sg~vf~~~~~~~~L~~~~~~s~is~~s~~~l~~l~~~fl~~~~~~~~~~~~~~~~~~~isee~v~~~~~~v~~~in~~l 111 (207)
-++++|++.++.|++ .+.+ +++++.. ++.+.+.++|+.-...+.+..+..-.-+.++|..++-. .-++++|.++
T Consensus 157 s~~i~l~~~v~Swif-g~~~---fs~~slf-fii~~~~~vY~~~~~rv~rnird~v~~~~~~ek~~nd~-ESveWLNtfL 230 (1227)
T COG5038 157 SVAIVLIGSVASWIF-GYLG---FSFASLF-FIILVTMYVYRTCIKRVRRNIRDLVQQELSEEKLENDY-ESVEWLNTFL 230 (1227)
T ss_pred hhhHHHHHHHHHHHH-HHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch-hHHHHHHHHH
Confidence 456777777776543 3333 3333332 23334455676654444443222111123344444444 3456667666
Q ss_pred HHHh
Q 028545 112 SIAR 115 (207)
Q Consensus 112 ~~~~ 115 (207)
.++=
T Consensus 231 ~KfW 234 (1227)
T COG5038 231 QKFW 234 (1227)
T ss_pred Hhhe
Confidence 6543
No 20
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=41.75 E-value=1.1e+02 Score=22.54 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=27.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 028545 120 GRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLY 163 (207)
Q Consensus 120 ~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY 163 (207)
+|..+.++.++. ++|..|-..|++|+....+|-+|+--
T Consensus 5 tERVKlfFEwFL------F~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 5 TERVKLFFEWFL------FFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555555443 35667778899999999999999743
No 21
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=39.86 E-value=94 Score=29.69 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=50.4
Q ss_pred CCCCccccccccCCCccceeee----------ccccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 028545 5 HSYDRISVHQALGGGSVADVLL----------WRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGK 74 (207)
Q Consensus 5 ~~~~~~~~~~~lg~~~v~dlll----------Wrd~~~Sg~vf~~~~~~~~L~~~~~~s~is~~s~~~l~~l~~~fl~~~ 74 (207)
+-.||.+.+-.||+-.+.+... |+--...++...+..++...+.+..-|++-.+.+...+.+...+++..
T Consensus 483 DG~rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~ 562 (579)
T KOG1889|consen 483 DGTRQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAVILIN 562 (579)
T ss_pred CccccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhheec
Confidence 3468889999999888888775 554444333333333321222223355666666666666666666666
Q ss_pred HhhhhCCCCCCCC
Q 028545 75 SASLLNRPLPPLP 87 (207)
Q Consensus 75 ~~~~~~~~~~~~~ 87 (207)
..++.|||-...|
T Consensus 563 g~~fvnwPrl~~p 575 (579)
T KOG1889|consen 563 GDQFVNWPRLVLP 575 (579)
T ss_pred hHHhcCCccccCc
Confidence 6788888754444
No 22
>PRK11677 hypothetical protein; Provisional
Probab=39.36 E-value=1.5e+02 Score=22.89 Aligned_cols=9 Identities=0% Similarity=0.394 Sum_probs=4.1
Q ss_pred chhHHHHHH
Q 028545 166 FQDHIDEKL 174 (207)
Q Consensus 166 ~q~~ID~~v 174 (207)
|+.++..+.
T Consensus 48 YkqeV~~HF 56 (134)
T PRK11677 48 YRQELVSHF 56 (134)
T ss_pred HHHHHHHHH
Confidence 444444444
No 23
>PHA02677 hypothetical protein; Provisional
Probab=33.63 E-value=1.2e+02 Score=22.58 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q 028545 145 FLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKI 177 (207)
Q Consensus 145 ~~tLl~i~~~~~FtvP~lY~~~q~~ID~~v~~~ 177 (207)
++-|+|...+.=..+|.+.||-+.|=|.+..-.
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888899999999999999886544
No 24
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=32.70 E-value=1.1e+02 Score=19.85 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 028545 138 YVGSVFNFLTLVYIGVLLSLSVPVLYEK 165 (207)
Q Consensus 138 ~lg~~~s~~tLl~i~~~~~FtvP~lY~~ 165 (207)
|+-++-++.||+..-|++++++-.+=+.
T Consensus 17 WlvtyaDlmTLLl~fFVlL~s~s~~d~~ 44 (58)
T PF13677_consen 17 WLVTYADLMTLLLAFFVLLFSMSSVDKE 44 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3445567888888888888876654333
No 25
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=28.56 E-value=1.4e+02 Score=20.66 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=25.1
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028545 162 LYEKFQDHIDEKLCKIQRVIQMQYRKIDESLL 193 (207)
Q Consensus 162 lY~~~q~~ID~~v~~~~~~~~~~~~~~~~k~~ 193 (207)
-|++++.-|..+-++...+..++-+.++.|+-
T Consensus 47 hyekfe~miqehtdkfnkkm~ehsehfk~kfa 78 (90)
T PF03037_consen 47 HYEKFERMIQEHTDKFNKKMHEHSEHFKHKFA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888888887643
No 26
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=25.82 E-value=48 Score=32.21 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.1
Q ss_pred cceeeeccccCchhHHHHHHHHHHHH
Q 028545 21 VADVLLWRKRCGGVVLLGSSTILWFL 46 (207)
Q Consensus 21 v~dlllWrd~~~Sg~vf~~~~~~~~L 46 (207)
++.|=.||+|++|+...++=++.|++
T Consensus 115 i~RLrSW~eprRT~~fc~vYf~aW~~ 140 (642)
T PF11696_consen 115 IARLRSWREPRRTAAFCAVYFIAWLL 140 (642)
T ss_pred HHHhhhhcccchHHHHHHHHHHHHHH
Confidence 56788999999999888777766655
No 27
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=24.96 E-value=3.5e+02 Score=28.44 Aligned_cols=49 Identities=18% Similarity=0.420 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 028545 124 SRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKL 174 (207)
Q Consensus 124 ~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~~q~~ID~~v 174 (207)
...+-..++.|+++++| |+++.|.++...+++..=..++++..-|-.-+
T Consensus 159 ~i~l~~~v~Swifg~~~--fs~~slffii~~~~~vY~~~~~rv~rnird~v 207 (1227)
T COG5038 159 AIVLIGSVASWIFGYLG--FSFASLFFIILVTMYVYRTCIKRVRRNIRDLV 207 (1227)
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666654 79999999999888877777777766665444
No 28
>COG2383 Uncharacterized conserved protein [Function unknown]
Probab=24.25 E-value=1.6e+02 Score=21.80 Aligned_cols=49 Identities=10% Similarity=0.170 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhchhHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 028545 152 GVLLSLSVPVLYEKFQDHID---EKLCKIQRVIQMQYRKIDESLLKKIPLPQ 200 (207)
Q Consensus 152 ~~~~~FtvP~lY~~~q~~ID---~~v~~~~~~~~~~~~~~~~k~~~kip~~~ 200 (207)
.+++.+++..+|.++.-.|. ..+....+...++..-+..|++..+|.+.
T Consensus 45 ~liGvyilsl~~La~~GVItin~~al~~L~~~a~~~~~~l~dkiig~lp~a~ 96 (109)
T COG2383 45 LLIGVYILSLFWLAQYGVITINWEALFNLAESATRQTGSLADKIIGILPFAT 96 (109)
T ss_pred HHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHhhhHHHHHHhcCcchH
Confidence 34455666666666555443 22333333344467788999999999853
No 29
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=23.73 E-value=7e+02 Score=24.43 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=32.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 028545 139 VGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPLP 199 (207)
Q Consensus 139 lg~~~s~~tLl~i~~~~~FtvP~lY~~~q~~ID~~v~~~~~~~~~~~~~~~~k~~~kip~~ 199 (207)
-|+|.+...++.++++..|.+-..+.-||+..-.+++....++++ .-+..+-..|-|
T Consensus 31 ~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~ls~~~~~----~~~~al~nmPiG 87 (655)
T COG3887 31 FNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQAEK----SLEEALTNMPIG 87 (655)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCce
Confidence 344555555555555555555555555555554566666666654 444555578876
No 30
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=22.71 E-value=5.4e+02 Score=23.61 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHH--HHHhchhHHHHHHHHHH
Q 028545 122 NLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGV-LLSLSVPV--LYEKFQDHIDEKLCKIQ 178 (207)
Q Consensus 122 d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~-~~~FtvP~--lY~~~q~~ID~~v~~~~ 178 (207)
|....+.+++++.++....-|++..-+++.+. ..+||+-. ..---|.+|-..++.+.
T Consensus 341 ~~iL~i~~av~~~~~~~~~lw~~v~~l~f~i~~~~a~~V~G~i~f~~~~~ei~~~lEr~~ 400 (422)
T KOG3873|consen 341 DRILYISAAVFLAVLAVLLLWFTVFVLMFTIFLLIAFTVFGVIGFLVGQAEIWNLLERNG 400 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhheecceeeeeeHHHHHHHHHHHH
Confidence 34444445555555555555665555544444 37777765 34456778888877755
No 31
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=22.50 E-value=3.4e+02 Score=20.40 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhch
Q 028545 147 TLVYIGVLLSLSVPVLYEKFQ 167 (207)
Q Consensus 147 tLl~i~~~~~FtvP~lY~~~q 167 (207)
.+++++++.++.+|.+....+
T Consensus 11 vlaIigil~~i~~p~~~~~~~ 31 (134)
T TIGR01710 11 VLVILGLLAALVAPKLFSQAD 31 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466677777888887765433
No 32
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.46 E-value=1.2e+02 Score=22.04 Aligned_cols=20 Identities=25% Similarity=0.109 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 028545 177 IQRVIQMQYRKIDESLLKKI 196 (207)
Q Consensus 177 ~~~~~~~~~~~~~~k~~~ki 196 (207)
+.+.+.++.+++.+||++|=
T Consensus 31 AvAnAqeLv~kisekCf~KC 50 (97)
T KOG1733|consen 31 AVANAQELVSKISEKCFDKC 50 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445677778888887773
No 33
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=22.28 E-value=3.9e+02 Score=24.24 Aligned_cols=38 Identities=8% Similarity=0.153 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHhchhH
Q 028545 132 LLWVVSYVGSVFNFLTLVYIGV---LLSLSVPVLYEKFQDH 169 (207)
Q Consensus 132 ~l~~ls~lg~~~s~~tLl~i~~---~~~FtvP~lY~~~q~~ 169 (207)
..+++.++-+++..|.+.++++ +=+.+.|..+.+++..
T Consensus 13 l~~iL~f~y~~vgswGlAIIllTIIVRlIL~PLsikQ~KS~ 53 (375)
T PRK02654 13 MLPILDFFYGIVPSYGLAIVALTLVIRFALYPLSAGSIRNM 53 (375)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444444445444443 2345789888887765
No 34
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=21.67 E-value=3e+02 Score=19.49 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=26.3
Q ss_pred eeeccccCchhHHHHHHHHHH-HHHHHhcCchhHH---HHHHHHHHHHHHH
Q 028545 24 VLLWRKRCGGVVLLGSSTILW-FLFERAGYNFLSF---VSNVLLLLVAILF 70 (207)
Q Consensus 24 lllWrd~~~Sg~vf~~~~~~~-~L~~~~~~s~is~---~s~~~l~~l~~~f 70 (207)
++.+||+.+|...++.....- .++...+..++.+ +=|++.+.....|
T Consensus 22 vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~qi~VYaGai~vLflF 72 (88)
T PRK06433 22 VVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVLVYVGAVLILITF 72 (88)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999888776544322 2233445555544 4455555444444
No 35
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=20.87 E-value=7.7e+02 Score=23.86 Aligned_cols=11 Identities=9% Similarity=-0.094 Sum_probs=4.1
Q ss_pred HHHHHHHHHhc
Q 028545 156 SLSVPVLYEKF 166 (207)
Q Consensus 156 ~FtvP~lY~~~ 166 (207)
.+.-|++.+.+
T Consensus 257 ~~~~~~~~~~~ 267 (659)
T TIGR00954 257 TKLRPPIGKLT 267 (659)
T ss_pred HHHccchhHHH
Confidence 33334333333
No 36
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=20.37 E-value=5.5e+02 Score=22.48 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=40.8
Q ss_pred HhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 028545 114 ARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHID 171 (207)
Q Consensus 114 ~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~~q~~ID 171 (207)
...+-.++++.+- ..-.+..+..+|-.++..-.+...++..+|+=.--..++++|+
T Consensus 146 V~~V~~~~~wv~r--L~ai~~~~~~v~~~~~~ll~~~~vllI~NtiR~~i~sRr~eIe 201 (297)
T COG2177 146 VAEVDDDREWVDR--LFAILRLVRTVGIGLSILLALAAVLLIGNTIRLAIFSRRREIE 201 (297)
T ss_pred ceehhcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3333444444443 3457778888888888888888888999999988888888887
No 37
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.30 E-value=3.4e+02 Score=19.57 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHHHH
Q 028545 146 LTLVYIGVLLSLSVPVLYEKFQDH-IDEKLCKIQRVIQMQYR 186 (207)
Q Consensus 146 ~tLl~i~~~~~FtvP~lY~~~q~~-ID~~v~~~~~~~~~~~~ 186 (207)
..+++++++++..+|.+....+.. ..+....+...++...+
T Consensus 17 Vvl~Iigil~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (149)
T COG2165 17 VVLAIIGILAALALPSLQGSIDKAKRLEAAQQALRVIRLALE 58 (149)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888889999887776666 44444444444443333
No 38
>PHA03419 E4 protein; Provisional
Probab=20.15 E-value=2.2e+02 Score=23.52 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=23.8
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHH
Q 028545 163 YEKFQDHIDEKLCKIQRVIQMQYRKID 189 (207)
Q Consensus 163 Y~~~q~~ID~~v~~~~~~~~~~~~~~~ 189 (207)
..+.++++|+.|+.+.+.++++|+++.
T Consensus 171 L~kWE~~f~qLV~~I~~DL~~YW~kL~ 197 (200)
T PHA03419 171 LQKWEQQFDQLVDNIVVDLRDYWQRLR 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999998764
Done!