Query 028545
Match_columns 207
No_of_seqs 110 out of 517
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 22:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.2 1.5E-07 5.3E-12 65.2 -0.2 58 71-128 15-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.3 2.5E-06 8.7E-11 56.2 -5.2 36 87-122 25-60 (60)
3 1w53_A Phosphoserine phosphata 27.7 76 0.0026 21.5 4.0 37 158-194 3-39 (84)
4 1oef_A Apolipoprotein E; glyco 27.3 36 0.0012 17.6 1.8 21 170-190 3-23 (26)
5 2wuj_A Septum site-determining 23.0 1.1E+02 0.0038 18.8 3.9 24 166-189 21-44 (57)
6 2knc_A Integrin alpha-IIB; tra 21.8 1.5E+02 0.0052 18.3 4.7 30 55-86 17-46 (54)
7 2l8s_A Integrin alpha-1; trans 18.4 1.8E+02 0.0063 18.0 4.9 29 55-85 14-42 (54)
8 3vou_A ION transport 2 domain 17.3 2.9E+02 0.01 19.8 7.0 34 157-190 105-138 (148)
9 1pu1_A Hypothetical protein MT 14.6 33 0.0011 23.9 -0.2 30 160-189 64-93 (94)
10 3ipi_A Geranyltranstransferase 14.2 1.2E+02 0.0043 25.0 3.3 43 155-199 224-266 (295)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.21 E-value=1.5e-07 Score=65.20 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=51.1
Q ss_pred HHHHHhhhhCCCCCCCC-------ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 028545 71 FWGKSASLLNRPLPPLP-------DLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQ 128 (207)
Q Consensus 71 l~~~~~~~~~~~~~~~~-------~~~isee~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~slk 128 (207)
+|..+.+.++|+....| |+++|+|.+++.++.+...+|.+++++|+++++||+.+|+|
T Consensus 15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 67777788888764443 88999999999999999999999999999999999999875
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.33 E-value=2.5e-06 Score=56.18 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=34.4
Q ss_pred CceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 028545 87 PDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRN 122 (207)
Q Consensus 87 ~~~~isee~v~~~~~~v~~~in~~l~~~~~i~~~~d 122 (207)
.|+++|+|.+++.++.+...+|.++.++|++++++|
T Consensus 25 ~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 25 SEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred cCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 388999999999999999999999999999999987
No 3
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=27.72 E-value=76 Score=21.54 Aligned_cols=37 Identities=8% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028545 158 SVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLK 194 (207)
Q Consensus 158 tvP~lY~~~q~~ID~~v~~~~~~~~~~~~~~~~k~~~ 194 (207)
+.+.+.++|++.+|.++..-.++.-.+.+++...++.
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~ie 39 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHHH
Confidence 3567889999999999977777666666677665553
No 4
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=27.27 E-value=36 Score=17.63 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028545 170 IDEKLCKIQRVIQMQYRKIDE 190 (207)
Q Consensus 170 ID~~v~~~~~~~~~~~~~~~~ 190 (207)
++++++.++.++.+.++++++
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHh
Confidence 456778888888888887765
No 5
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.98 E-value=1.1e+02 Score=18.84 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 028545 166 FQDHIDEKLCKIQRVIQMQYRKID 189 (207)
Q Consensus 166 ~q~~ID~~v~~~~~~~~~~~~~~~ 189 (207)
.++++|.+++.+...+...++...
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~ 44 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKT 44 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999888887766665544
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.80 E-value=1.5e+02 Score=18.33 Aligned_cols=30 Identities=30% Similarity=0.721 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC
Q 028545 55 LSFVSNVLLLLVAILFFWGKSASLLNRPLPPL 86 (207)
Q Consensus 55 is~~s~~~l~~l~~~fl~~~~~~~~~~~~~~~ 86 (207)
+++++-++++.+++..+|. +++|+|..++.
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFkR~~~~~ 46 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFKRNRPPL 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCCCc
Confidence 4445555555555554564 36888765543
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=18.38 E-value=1.8e+02 Score=17.96 Aligned_cols=29 Identities=38% Similarity=0.724 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC
Q 028545 55 LSFVSNVLLLLVAILFFWGKSASLLNRPLPP 85 (207)
Q Consensus 55 is~~s~~~l~~l~~~fl~~~~~~~~~~~~~~ 85 (207)
+|+++-++++++++..+|. +++|+|..++
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFKR~~~~ 42 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCcc
Confidence 4445555555555554564 3688886544
No 8
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=17.33 E-value=2.9e+02 Score=19.81 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=25.0
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 028545 157 LSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDE 190 (207)
Q Consensus 157 FtvP~lY~~~q~~ID~~v~~~~~~~~~~~~~~~~ 190 (207)
+....+.++.+++.|+.-....+++++.-+.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~ 138 (148)
T 3vou_A 105 VQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAE 138 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888888888777766666665
No 9
>1pu1_A Hypothetical protein MTH677; structural genomics, alpha and beta protein (A+B), unknown function; NMR {Methanothermobacterthermautotrophicus} SCOP: d.266.1.1
Probab=14.57 E-value=33 Score=23.90 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=19.3
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 028545 160 PVLYEKFQDHIDEKLCKIQRVIQMQYRKID 189 (207)
Q Consensus 160 P~lY~~~q~~ID~~v~~~~~~~~~~~~~~~ 189 (207)
|.+-+--.+.||++++.+..++.+..+.++
T Consensus 64 d~lsk~D~~ivdeAi~~AY~~ie~yl~d~r 93 (94)
T 1pu1_A 64 DELSDADPGIVDEAVDAAYRSLESFLDGFR 93 (94)
T ss_dssp CTTCCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444456778887777777776666544
No 10
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=14.18 E-value=1.2e+02 Score=25.04 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 028545 155 LSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPLP 199 (207)
Q Consensus 155 ~~FtvP~lY~~~q~~ID~~v~~~~~~~~~~~~~~~~k~~~kip~~ 199 (207)
.-.|+|.+|-..... +..++.+++.++++.++..+ .++.+|..
T Consensus 224 gk~Tlp~l~al~~~~-~~~le~a~~~a~~~~~~A~~-~L~~lp~~ 266 (295)
T 3ipi_A 224 TSETLPHIYMKSTSK-EEALKKSIDCVKLHVAAAKE-TLETFREC 266 (295)
T ss_dssp --CCHHHHHTTTSCH-HHHHHHHHHHHHHHHHHHHH-HHTTSCCS
T ss_pred CcccHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHH-HHHhCCCc
Confidence 457899998644332 34467777777777777776 67777754
Done!