BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028546
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2
SV=1
Length = 207
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/207 (93%), Positives = 201/207 (97%)
Query: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS+WIE+VRTERG DVIIVLV
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120
Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
GNKTDLVDKRQVSIEEGD KA+++GV+FIETSAKAGFNIKPLFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
QEDMVDVNLK + NS+Q EQQ GGCAC
Sbjct: 181 QEDMVDVNLKTSSNSAQGEQQRGGCAC 207
>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3
SV=1
Length = 207
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/207 (90%), Positives = 197/207 (95%)
Query: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVANR SFLNTS+WIEEVR ER GDVIIVLV
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120
Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
GNKTDLV+KRQVSIEEGD K +E+GVMFIETSAKAGFNIKPLFRKIAAALPGME+ S+TK
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTK 180
Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
EDMVDVNLKPT NSSQ +QQGG C+C
Sbjct: 181 NEDMVDVNLKPTSNSSQGDQQGGACSC 207
>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1
SV=1
Length = 208
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/208 (87%), Positives = 193/208 (92%), Gaps = 1/208 (0%)
Query: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA+RQSFLNT++WI+EVRTERG DVI+VLV
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120
Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
GNKTDLVDKRQVSIEE + KA+E VMFIETSAKAGFNIK LFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
Query: 181 QEDMVDVNLKPT-VNSSQTEQQGGGCAC 207
QEDMVDVNLK + N+S +QQ GGC+C
Sbjct: 181 QEDMVDVNLKSSNANASLAQQQSGGCSC 208
>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1
SV=1
Length = 214
Score = 335 bits (860), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 166/198 (83%), Positives = 182/198 (91%), Gaps = 2/198 (1%)
Query: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
MASVSPLAK+KLVFLGDQSVGKTSIITRFMYDKFDTTYQ TIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVL 119
QLWDTAGQERFRSLIPSYIRDSSVA++VYDV+NRQ+FLNTS+WIE+V ERG +VIIVL
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120
Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS-S 178
VGNKTDLV+KRQVSI EG+ K KE+GVMFIETSAK FNIK LFRKIAAALPG+++ S +
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLA 180
Query: 179 TKQEDMVDVNLKPTVNSS 196
TK +DMVDVNLK T NSS
Sbjct: 181 TKSDDMVDVNLKTTSNSS 198
>sp|Q9LV79|RAH1A_ARATH Ras-related protein RABH1a OS=Arabidopsis thaliana GN=RABH1A PE=2
SV=1
Length = 206
Score = 317 bits (813), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 156/199 (78%), Positives = 173/199 (86%), Gaps = 1/199 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
YKLVFLGDQ VGKTSIIT FMY KFDT+YQATIGIDFLSKT EDRT RLQLWDTAGQE
Sbjct: 8 YKLVFLGDQGVGKTSIITCFMYGKFDTSYQATIGIDFLSKTTRYEDRTFRLQLWDTAGQE 67
Query: 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
RF+SL+PSYIRDSSVAVIVYDVA++QSF+NTS+WIEEVR ERG VIIVLVGNKTDLV+K
Sbjct: 68 RFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERGSYVIIVLVGNKTDLVNK 127
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNL 189
RQVSIEEG+ KA+EFG +F+ETSAKAGFNIKPLF KI +AL G E +S TKQED+VDVNL
Sbjct: 128 RQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKITSALQGNEAVSWTKQEDLVDVNL 187
Query: 190 KPTVNSSQ-TEQQGGGCAC 207
KP + SSQ QQ C+C
Sbjct: 188 KPLMFSSQANHQQESNCSC 206
>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3
Length = 208
Score = 314 bits (804), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/203 (73%), Positives = 173/203 (85%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T++WI++VRTERG DVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQVSIEEG+ KAKE VMFIETSAKAG+N+K LFR++AAALPGME+ +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
+D+ L+ +E GGC+C
Sbjct: 189 IDIKLEKPQEQPVSE---GGCSC 208
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3
Length = 208
Score = 314 bits (804), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/203 (73%), Positives = 173/203 (85%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T++WI++VRTERG DVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQVSIEEG+ KAKE VMFIETSAKAG+N+K LFR++AAALPGME+ +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
+D+ L+ +E GGC+C
Sbjct: 189 IDIKLEKPQEQPVSE---GGCSC 208
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2
Length = 208
Score = 313 bits (803), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 149/203 (73%), Positives = 172/203 (84%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T++WI++VRTERG DVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQVSIEEG+ KAKE VMFIETSAKAG+N+K LFR++AAALPGME+ +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
+D+ L+ E GGC+C
Sbjct: 189 IDIKLEKPQEQPVNE---GGCSC 208
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4
Length = 208
Score = 313 bits (803), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 149/203 (73%), Positives = 172/203 (84%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T++WI++VRTERG DVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQVSIEEG+ KAKE VMFIETSAKAG+N+K LFR++AAALPGME+ +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
+D+ L+ E GGC+C
Sbjct: 189 IDIKLEKPQEQPVNE---GGCSC 208
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 312 bits (800), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 147/203 (72%), Positives = 172/203 (84%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+ AV+VYD+ N SF T++WI++VRTERG DVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQVSIEEG+ KAKE VMFIETSAKAG+N+K LFR++AAALPGME+ +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
+D+ L+ +E GGC+C
Sbjct: 189 IDIKLEKPQEQPVSE---GGCSC 208
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 307 bits (786), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 170/203 (83%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS+WI++VRTERG DVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQ++IEEG+ +AKE VMFIETSAK G+N+K LFR++A+ALPGME + +E M
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
+D+ L +E GGC+C
Sbjct: 189 IDIKLDKPQEPPASE---GGCSC 208
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1
Length = 208
Score = 307 bits (786), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 170/203 (83%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS+WI++VRTERG DVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQ++IEEG+ +AKE VMFIETSAK G+N+K LFR++A+ALPGME + +E M
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
+D+ L +E GGC+C
Sbjct: 189 IDIKLDKPQEPPASE---GGCSC 208
>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1
Length = 208
Score = 307 bits (786), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 170/203 (83%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS+WI++VRTERG DVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQ++IEEG+ +AKE VMFIETSAK G+N+K LFR++A+ALPGME + +E M
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
+D+ L +E GGC+C
Sbjct: 189 IDIKLDKPQEPPASE---GGCSC 208
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ryh1 PE=1 SV=1
Length = 201
Score = 301 bits (772), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 145/201 (72%), Positives = 165/201 (82%), Gaps = 8/201 (3%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
L K+KLVFLG+QSVGKTS+ITRFMYD+FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct: 9 LRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 68
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
GQERFRSLIPSYIRDSSVA+IVYD+ N SF+NT +WIE+VR ERG DVIIVLVGNKTDL
Sbjct: 69 GQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDL 128
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVD 186
DKRQV+ EEG+ KAKE +M +ETSAKAG N+K LFRKIA LPGME + T+ M+D
Sbjct: 129 ADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENV-ETQSTQMID 187
Query: 187 VNLKPTVNSSQTEQQGGGCAC 207
V+++P N S C C
Sbjct: 188 VSIQPNENES-------SCNC 201
>sp|Q55FK2|RAB6_DICDI Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3
SV=1
Length = 208
Score = 300 bits (768), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 144/201 (71%), Positives = 168/201 (83%)
Query: 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW 63
+ L+KYKLVFLGDQSVGKTSIITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLW
Sbjct: 1 MESLSKYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK 123
DTAGQERFRSLIPSYIRDSSVA++VYD+ N+ SF NT +WIE+VR ERG +V+I+LVGNK
Sbjct: 61 DTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNK 120
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQED 183
TDL DKRQVSIEEG+ KAKE+ +MF ETSAKAGFNIK LFRK+A+ALPG+++ S TK +
Sbjct: 121 TDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNSMTKNQH 180
Query: 184 MVDVNLKPTVNSSQTEQQGGG 204
+ + T ++G G
Sbjct: 181 EIISEVDITDGGKPALKEGDG 201
>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1
PE=2 SV=1
Length = 205
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 142/201 (70%), Positives = 166/201 (82%), Gaps = 4/201 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
L K+KLVFLG+QSVGKTSIITRFMYD FD TYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct: 9 LKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 68
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
GQERFRSLIPSYIRDSSVAV+VYD+ N SF T++W+++VR ERG DVIIVLVGNKTDL
Sbjct: 69 GQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDL 128
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVD 186
DKRQVS E+G+ KA++ VMFIETSAKAG+N+K LFRKIA ALPG+ + +Q ++V
Sbjct: 129 ADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQEETPEQPNIVI 188
Query: 187 VNLKPTVNSSQTEQQGGGCAC 207
+N P ++ E QG C C
Sbjct: 189 MN--PPKDAE--ESQGRQCPC 205
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2
PE=2 SV=1
Length = 205
Score = 288 bits (737), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 140/203 (68%), Positives = 164/203 (80%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 6 NPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 65
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS+WI++VRTERG DVII+LVGNKT
Sbjct: 66 TAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 125
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQV+ +EG+ KAKE VMFIETSAKAG+N+K LFR+IA ALPG+ + ++
Sbjct: 126 DLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIIKDDPVEPPNV 185
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
V ++ + Q G C C
Sbjct: 186 VTMD---PIRQRQIVTDEGSCWC 205
>sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=1 SV=2
Length = 254
Score = 280 bits (717), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 134/203 (66%), Positives = 161/203 (79%), Gaps = 3/203 (1%)
Query: 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+PL K+KLVFLG+QSV KTS+ITRF YD FD TYQA IGIDFLSKTMYLED T+ L+LWD
Sbjct: 9 NPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
TAGQER RSLIP YIRDS+ AV+VYD+ N SF T++WI++VRTERG DVII LVGN+T
Sbjct: 69 TAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
DL DKRQVS+EEG+ KAK V FIET AKAG+N+K LFR++AAALPGME+ +EDM
Sbjct: 129 DLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMESTQDGSREDM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
D+ L+ + +E GGC+C
Sbjct: 189 SDIKLEKPQEQTVSE---GGCSC 208
>sp|Q99260|YPT6_YEAST GTP-binding protein YPT6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT6 PE=1 SV=1
Length = 215
Score = 252 bits (643), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 128/208 (61%), Positives = 157/208 (75%), Gaps = 7/208 (3%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
L KYK+VFLG+Q VGKTS+ITRFMYD FD YQATIGIDFLSKTMYL+D+T+RLQLWDTA
Sbjct: 8 LTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTA 67
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTD 125
GQERFRSLIPSYIRDS VA+IVYD+ R+SF +WIE+V+ ERG +VI+ +VGNK+D
Sbjct: 68 GQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSD 127
Query: 126 LVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRKIAAALPGMETLSST--KQE 182
L D+RQ+S EEG+ KAK G +F+ETS KAG+N+K LF+KIA +LP + ST E
Sbjct: 128 LSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEFQNSESTPLDSE 187
Query: 183 DMVDVNL-KPTV--NSSQTEQQGGGCAC 207
+ N KP V S+ EQ+ C C
Sbjct: 188 NANSANQNKPGVIDISTAEEQEQSACQC 215
>sp|Q5JT25|RAB41_HUMAN Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2
Length = 222
Score = 242 bits (618), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/184 (62%), Positives = 146/184 (79%), Gaps = 1/184 (0%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
L K KL+FLG+QSVGKTSII+RFMY+ F QAT+GIDFLSKTMYLED+ V+LQLWDTA
Sbjct: 29 LCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTA 88
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
GQERF SLIPSYIRDS++AV+VYD+ N SF T +W+E VR ERG DV+I+L+GNK DL
Sbjct: 89 GQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDL 148
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVD 186
+KRQV+ E+G+ K++ VMFIETSAK G+N+K LFR++A+AL T S +E V+
Sbjct: 149 DNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALLSTRT-SPPPKEGTVE 207
Query: 187 VNLK 190
+ L+
Sbjct: 208 IELE 211
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 122/197 (61%), Gaps = 3/197 (1%)
Query: 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK 123
DTAGQER+ SL P Y R + A++VYD+ N+++F W++E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSST---K 180
DL KR V EE A + ++F+ETSAK N+ LF IA LP E S++
Sbjct: 135 ADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAG 194
Query: 181 QEDMVDVNLKPTVNSSQ 197
+ VD++ + N SQ
Sbjct: 195 RSRGVDLHEQTQQNKSQ 211
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 111/171 (64%)
Query: 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK 123
DTAGQER+ SL P Y R + A++VYD+ N+++F W++E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
DL +KR V EE A + ++F+ETSAK N+ LF IA LP E
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 111/171 (64%)
Query: 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK 123
DTAGQER+ SL P Y R + A++VYD+ N+++F W++E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
DL +KR V EE A + ++F+ETSAK N+ LF IA LP E
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 111/171 (64%)
Query: 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK 123
DTAGQER+ SL P Y R + A++VYD+ N+++F W++E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
DL +KR V EE A + ++F+ETSAK N+ LF IA LP E
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ N +SF W++E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
+KR V +E A + ++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 67
+ KLV LGD VGK+ I+ RF+ +FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
Query: 68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127
QER+ +L P Y R + VAVIVYD+ + +SF W++E++ D+++ LVGNK DL
Sbjct: 93 QERYSALAPLYYRGAGVAVIVYDITSPESFKKAQYWVKELQKHGSPDIVMALVGNKADLH 152
Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
+KR+V E+G A++ G+ FIETSAK NI LF +I LP
Sbjct: 153 EKREVPTEDGMELAEKNGMFFIETSAKTADNINQLFEEIGKRLP 196
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 121/186 (65%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ D+F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
+ SL P Y R ++ A+IV+DV N+ SF +W++E++ + ++++ L GNK+DL+D R
Sbjct: 72 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 131
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLK 190
+V+ E+ A+E G+ F+ETSAK N+K +F +IA LP ++ + + D +
Sbjct: 132 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENPTGMVLPDRAMD 191
Query: 191 PTVNSS 196
V+SS
Sbjct: 192 RAVSSS 197
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ N +SF W++E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
+KR V +E A + ++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 114/178 (64%)
Query: 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
A+ + + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ +
Sbjct: 14 AAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFE 73
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
+WDTAGQER+ SL P Y R + A++VYD+ N +F W++E++ + +++I L G
Sbjct: 74 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG 133
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSST 179
NK DL KR V +E A + ++F+ETSAK N+ +F IA LP E ++T
Sbjct: 134 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAT 191
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 114/178 (64%)
Query: 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
A+ + + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ +
Sbjct: 14 AAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFE 73
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
+WDTAGQER+ SL P Y R + A++VYD+ N +F W++E++ + +++I L G
Sbjct: 74 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG 133
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSST 179
NK DL KR V +E A + ++F+ETSAK N+ +F IA LP E ++T
Sbjct: 134 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAT 191
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 110/161 (68%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ D+F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
+ SL P Y R ++ A+IV+D+ N+ SF +W++E++ + ++++ L GNK DL+D R
Sbjct: 72 YHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
+VS EE + A+E + F+ETSAK N+K +F +IA LP
Sbjct: 132 KVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLP 172
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ N +SF W++E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
+KR V +E A + ++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ N +SF W++E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
+KR V +E A + ++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ N +SF W++E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
+KR V +E A + ++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ N +SF W++E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
+KR V +E A + ++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 112/173 (64%)
Query: 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
A+ + + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ +
Sbjct: 14 AAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFE 73
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
+WDTAGQER+ SL P Y R + A++VYD+ N +F W++E++ + +++I L G
Sbjct: 74 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG 133
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
NK DL KR V +E A++ ++F+ETSAK N+ +F IA LP E
Sbjct: 134 NKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 111/173 (64%)
Query: 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
A+ + + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ +
Sbjct: 14 AAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFE 73
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
+WDTAGQER+ SL P Y R + A++VYD+ N +F W++E++ + +++I L G
Sbjct: 74 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG 133
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
NK DL KR V +E A + ++F+ETSAK N+ +F IA LP E
Sbjct: 134 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 111/173 (64%)
Query: 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
A+ + + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ +
Sbjct: 14 AAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFE 73
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
+WDTAGQER+ SL P Y R + A++VYD+ N +F W++E++ + +++I L G
Sbjct: 74 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG 133
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
NK DL KR V +E A + ++F+ETSAK N+ +F IA LP E
Sbjct: 134 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 112/173 (64%)
Query: 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
A+ + + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ +
Sbjct: 14 AAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFE 73
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
+WDTAGQER+ SL P Y R + A++VYD+ N +F+ W++E++ + +++I L G
Sbjct: 74 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAG 133
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
NK DL KR V ++ A + ++F+ETSAK N+ +F IA LP E
Sbjct: 134 NKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 121/201 (60%), Gaps = 10/201 (4%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78
Query: 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
RFR++ SY R ++ A++ YD+ R SFL+ WIE+VR G +++ +L+GNK+DL +
Sbjct: 79 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 138
Query: 130 RQVSIEEGDGKAKEFGVMF-IETSAKAGFNIKPLFRKIAAALPGME--TLSSTKQEDMVD 186
R+VS+ E A+ + ++ IETSAK N++ F ++A L L S K D +
Sbjct: 139 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKSPDHIQ 198
Query: 187 VNLKPTVNSSQTEQQGGGCAC 207
+N K +G GC C
Sbjct: 199 LNSKDI-------GEGWGCGC 212
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 109/164 (66%), Gaps = 3/164 (1%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LG+ +VGK+SI+ RF+ + F + TIG FL++ + + + TV+ ++WDTAGQER
Sbjct: 9 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 68
Query: 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD-- 128
F SL P Y R++ A++VYDV QSF+ W++E+ + D+II LVGNK D++
Sbjct: 69 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 128
Query: 129 -KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
+R+V+ EEG+ A+E G++F ETSAK G N+ +F I +P
Sbjct: 129 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 172
>sp|Q40723|RLGP2_ORYSJ Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2
PE=2 SV=2
Length = 217
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 112/164 (68%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK++I++RF + F ++TIG++F +K++ +E +T++ Q+WDTAGQE
Sbjct: 13 FKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQE 72
Query: 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++VYD+ RQSF N RW+ E+R ++I++VGNK+DL+
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHL 132
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGM 173
R VS +EG A++ G+ F+ETSA N++ F+ I + G+
Sbjct: 133 RAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGI 176
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 106/161 (65%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ +F ++TIG F S T+ + + TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
+ SL P Y R ++ A+IVYD+ + SF +W++E++ + ++++ L GNK DL D+R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRR 131
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
+V+ EE A+E G+ F+ETSAK N+ +F +IA LP
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLP 172
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1
Length = 210
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 10/201 (4%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
RFR++ SY R ++ A++ YD++ R +FL+ WIE+VR G +++ +L+GNK+DL D
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADL 136
Query: 130 RQVSIEEGDGKAKEFGVMF-IETSAKAGFNIKPLFRKIAAALPGME--TLSSTKQEDMVD 186
R+V + E A+ + ++ IETSAK N++ F ++A L + S K D +
Sbjct: 137 REVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHGGPMFSEKNTDHIQ 196
Query: 187 VNLKPTVNSSQTEQQGGGCAC 207
++ K S GC C
Sbjct: 197 LDSKDIAES-------WGCGC 210
>sp|Q54DA7|RAB4_DICDI Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3
SV=1
Length = 205
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 126/210 (60%), Gaps = 16/210 (7%)
Query: 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
PL K + +G QSVGK+ ++ RF+ +KF + TIG+DF S+ + ++ + V+LQ+WDT
Sbjct: 4 PLYLVKFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDT 63
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125
AGQERFRS++ SY R S+ +VYDV NR+S+ + + W+ +V++ DV I+LVGNK D
Sbjct: 64 AGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKAD 123
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF--------RKIAAALPGMETLS 177
L ++R+V+ E A+E G++F+ETSA G ++ +F KI + +E L
Sbjct: 124 LTEQREVTFLEASRIAQENGLLFMETSALTGEGVEEMFLKCTRTIMTKIDSGEVNLEHLG 183
Query: 178 STKQEDMVDVNLKPTVNSSQTEQQGGGCAC 207
D +V KP +S+ C+C
Sbjct: 184 VQISSDSGNVTKKPGDSSN--------CSC 205
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 113/175 (64%)
Query: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
M + + + ++KLV LG+ +VGK+S++ RF+ F ++TIG FL++T+ L D TV+
Sbjct: 1 MNNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKF 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
++WDTAGQER+ +L P Y R + A++VYD+ + SF +W++E++ + +++I L
Sbjct: 61 EIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALA 120
Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
GNK DL KR+V E A+E G++F+ETSAK N+ LF +IA LP T
Sbjct: 121 GNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPT 175
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 10/201 (4%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
RFR++ SY R ++ A++ YD++ R +FL+ WIE+VR G +++ +L+GNK+DL D
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADF 136
Query: 130 RQVSIEEGDGKAKEFGVMF-IETSAKAGFNIKPLFRKIAAALPGME--TLSSTKQEDMVD 186
R+V + E A+ + ++ IETSAK N++ F ++A L + S K D +
Sbjct: 137 REVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHGGPMFSEKNTDHIQ 196
Query: 187 VNLKPTVNSSQTEQQGGGCAC 207
++ K S GC C
Sbjct: 197 LDSKDIAES-------WGCGC 210
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 107/158 (67%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGKT ++ RF D F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
RFR++ +Y R + ++VYD+ N +SF N WI + DV +++GNK D+ DK
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
RQVS E G+ A ++G+ F+ETSAKA N++ F +A
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLA 166
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2
Length = 207
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 107/158 (67%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGKT ++ RF D F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
RFR++ +Y R + ++VYD+ N +SF N WI + DV +++GNK D+ DK
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
RQVS E G+ A ++G+ F+ETSAKA N++ F +A
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2
Length = 207
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 107/158 (67%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGKT ++ RF D F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
RFR++ +Y R + ++VYD+ N +SF N WI + DV +++GNK D+ DK
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
RQVS E G+ A ++G+ F+ETSAKA N++ F +A
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,300,725
Number of Sequences: 539616
Number of extensions: 2680190
Number of successful extensions: 10056
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 8187
Number of HSP's gapped (non-prelim): 1306
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)