Query 028546
Match_columns 207
No_of_seqs 112 out of 1763
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 13:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.6E-43 1.4E-47 243.9 19.5 198 7-207 7-205 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.9E-42 6.2E-47 240.0 21.0 202 5-207 18-221 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 2.6E-40 5.6E-45 230.1 21.5 198 7-207 3-200 (200)
4 KOG0078 GTP-binding protein SE 100.0 6.4E-39 1.4E-43 227.1 20.8 169 5-173 8-176 (207)
5 KOG0080 GTPase Rab18, small G 100.0 3.9E-38 8.4E-43 212.6 18.9 171 7-177 9-180 (209)
6 cd04120 Rab12 Rab12 subfamily. 100.0 3.5E-37 7.6E-42 225.7 23.2 198 10-207 1-202 (202)
7 KOG0098 GTPase Rab2, small G p 100.0 1.1E-37 2.4E-42 215.5 17.5 169 5-173 2-170 (216)
8 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.5E-36 3.3E-41 223.3 21.9 195 10-206 1-201 (201)
9 KOG0079 GTP-binding protein H- 100.0 4.8E-38 1E-42 209.4 12.2 186 8-194 7-192 (198)
10 PLN03110 Rab GTPase; Provision 100.0 6.9E-36 1.5E-40 221.8 23.7 166 8-173 11-176 (216)
11 cd04121 Rab40 Rab40 subfamily. 100.0 4.9E-36 1.1E-40 217.7 22.3 167 8-175 5-171 (189)
12 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.8E-36 6E-41 212.8 18.9 170 4-173 9-178 (222)
13 cd04110 Rab35 Rab35 subfamily. 100.0 1.1E-35 2.4E-40 218.3 23.0 195 8-206 5-199 (199)
14 KOG0394 Ras-related GTPase [Ge 100.0 3.5E-36 7.6E-41 207.6 17.4 176 1-176 1-183 (210)
15 cd04112 Rab26 Rab26 subfamily. 100.0 3.6E-35 7.8E-40 214.3 22.0 190 10-206 1-191 (191)
16 cd04111 Rab39 Rab39 subfamily. 100.0 6.9E-35 1.5E-39 215.7 22.9 199 9-207 2-211 (211)
17 PLN03108 Rab family protein; P 100.0 2.2E-34 4.8E-39 212.9 23.4 167 6-172 3-169 (210)
18 cd04144 Ras2 Ras2 subfamily. 100.0 6.2E-35 1.3E-39 212.9 20.1 163 11-174 1-166 (190)
19 cd04125 RabA_like RabA-like su 100.0 1.9E-34 4E-39 210.1 22.0 163 10-172 1-163 (188)
20 cd04122 Rab14 Rab14 subfamily. 100.0 2E-34 4.3E-39 206.0 21.7 163 9-171 2-164 (166)
21 cd04109 Rab28 Rab28 subfamily. 100.0 2.4E-34 5.3E-39 213.6 22.7 164 10-173 1-168 (215)
22 cd04126 Rab20 Rab20 subfamily. 100.0 1.4E-34 3.1E-39 214.2 20.0 165 10-179 1-198 (220)
23 cd04117 Rab15 Rab15 subfamily. 100.0 4.7E-34 1E-38 203.1 21.6 160 10-169 1-160 (161)
24 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 9.2E-34 2E-38 211.0 22.9 168 3-172 7-189 (232)
25 cd01865 Rab3 Rab3 subfamily. 100.0 8.3E-34 1.8E-38 202.6 21.6 162 10-171 2-163 (165)
26 cd01867 Rab8_Rab10_Rab13_like 100.0 8.4E-34 1.8E-38 202.9 21.4 165 8-172 2-166 (167)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.4E-34 1.4E-38 205.6 20.9 163 6-170 2-179 (182)
28 cd04133 Rop_like Rop subfamily 100.0 8E-34 1.7E-38 204.0 20.6 160 10-171 2-173 (176)
29 KOG0086 GTPase Rab4, small G p 100.0 1.7E-34 3.7E-39 193.5 15.1 170 2-171 2-171 (214)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 9.9E-34 2.1E-38 203.4 20.3 163 9-172 2-165 (172)
31 KOG0093 GTPase Rab3, small G p 100.0 1E-34 2.2E-39 193.3 13.8 168 9-176 21-188 (193)
32 PTZ00369 Ras-like protein; Pro 100.0 1E-33 2.2E-38 206.4 20.1 165 7-172 3-168 (189)
33 cd01875 RhoG RhoG subfamily. 100.0 2.5E-33 5.3E-38 204.6 21.8 162 8-171 2-177 (191)
34 cd04119 RJL RJL (RabJ-Like) su 100.0 3E-33 6.6E-38 199.8 21.3 162 10-171 1-167 (168)
35 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.2E-33 6.9E-38 199.7 21.4 163 9-171 2-164 (166)
36 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.1E-33 4.6E-38 203.2 20.5 164 10-174 1-169 (182)
37 KOG0095 GTPase Rab30, small G 100.0 1.7E-34 3.6E-39 192.9 13.3 163 9-171 7-169 (213)
38 cd04131 Rnd Rnd subfamily. Th 100.0 3.2E-33 7E-38 201.5 20.7 161 9-171 1-176 (178)
39 cd01868 Rab11_like Rab11-like. 100.0 7.8E-33 1.7E-37 197.5 22.1 162 9-170 3-164 (165)
40 cd01864 Rab19 Rab19 subfamily. 100.0 6.8E-33 1.5E-37 197.8 21.7 162 8-169 2-164 (165)
41 cd04136 Rap_like Rap-like subf 100.0 3.8E-33 8.3E-38 198.5 20.1 161 9-170 1-162 (163)
42 PLN03118 Rab family protein; P 100.0 1.2E-32 2.6E-37 204.0 23.3 172 5-177 10-183 (211)
43 cd04127 Rab27A Rab27a subfamil 100.0 4.5E-33 9.7E-38 201.5 20.5 164 8-171 3-177 (180)
44 PF00071 Ras: Ras family; Int 100.0 5.3E-33 1.1E-37 197.7 20.3 161 11-171 1-161 (162)
45 cd04113 Rab4 Rab4 subfamily. 100.0 8.5E-33 1.8E-37 196.5 21.3 161 10-170 1-161 (161)
46 cd01866 Rab2 Rab2 subfamily. 100.0 1E-32 2.2E-37 197.5 21.6 164 9-172 4-167 (168)
47 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.4E-32 3.1E-37 203.6 22.4 163 9-173 1-178 (222)
48 cd04118 Rab24 Rab24 subfamily. 100.0 2.1E-32 4.5E-37 200.2 22.8 164 10-174 1-169 (193)
49 KOG0091 GTPase Rab39, small G 100.0 8.4E-34 1.8E-38 192.2 14.1 164 9-172 8-174 (213)
50 cd04132 Rho4_like Rho4-like su 100.0 8.2E-33 1.8E-37 201.3 20.3 166 10-177 1-173 (187)
51 cd04106 Rab23_lke Rab23-like s 100.0 1.3E-32 2.8E-37 195.7 20.7 159 10-169 1-161 (162)
52 cd04175 Rap1 Rap1 subgroup. T 100.0 1.1E-32 2.3E-37 196.6 20.0 162 9-171 1-163 (164)
53 cd01861 Rab6 Rab6 subfamily. 100.0 2.2E-32 4.7E-37 194.3 21.4 161 10-170 1-161 (161)
54 smart00175 RAB Rab subfamily o 100.0 2.5E-32 5.5E-37 194.5 21.3 163 10-172 1-163 (164)
55 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.9E-32 4.2E-37 197.2 20.8 160 9-170 1-174 (175)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.4E-32 5.1E-37 195.9 20.9 163 11-173 2-167 (170)
57 PLN03071 GTP-binding nuclear p 100.0 2.6E-32 5.6E-37 202.9 21.7 165 7-174 11-175 (219)
58 cd04176 Rap2 Rap2 subgroup. T 100.0 2.3E-32 5E-37 194.6 20.4 161 9-170 1-162 (163)
59 KOG0088 GTPase Rab21, small G 100.0 1.2E-33 2.6E-38 190.6 12.7 175 7-181 11-185 (218)
60 cd01860 Rab5_related Rab5-rela 100.0 6.7E-32 1.4E-36 192.2 21.9 162 9-170 1-162 (163)
61 cd00877 Ran Ran (Ras-related n 100.0 6.8E-32 1.5E-36 192.8 20.8 161 10-173 1-161 (166)
62 cd04116 Rab9 Rab9 subfamily. 100.0 1.2E-31 2.6E-36 192.3 21.9 163 7-170 3-170 (170)
63 cd04124 RabL2 RabL2 subfamily. 100.0 8.2E-32 1.8E-36 191.5 20.6 160 10-173 1-160 (161)
64 cd01871 Rac1_like Rac1-like su 100.0 8E-32 1.7E-36 193.8 20.7 158 10-169 2-173 (174)
65 cd04140 ARHI_like ARHI subfami 100.0 7E-32 1.5E-36 192.6 20.0 159 10-169 2-163 (165)
66 smart00173 RAS Ras subfamily o 100.0 6.3E-32 1.4E-36 192.5 19.7 161 10-171 1-162 (164)
67 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.1E-31 2.5E-36 192.4 21.0 162 9-170 2-168 (170)
68 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.1E-31 2.3E-36 191.3 20.5 162 8-170 1-163 (164)
69 cd04134 Rho3 Rho3 subfamily. 100.0 1.5E-31 3.2E-36 194.9 21.2 161 10-172 1-175 (189)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.8E-31 3.8E-36 189.6 20.4 160 9-170 1-161 (162)
71 cd04123 Rab21 Rab21 subfamily. 100.0 4.6E-31 1E-35 187.4 21.8 161 10-170 1-161 (162)
72 cd04142 RRP22 RRP22 subfamily. 100.0 2.3E-31 5.1E-36 194.8 20.5 165 10-174 1-177 (198)
73 cd04143 Rhes_like Rhes_like su 100.0 3.8E-31 8.3E-36 199.4 22.2 161 10-171 1-171 (247)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 4.4E-31 9.6E-36 188.2 21.0 160 10-170 1-163 (164)
75 cd01862 Rab7 Rab7 subfamily. 100.0 1E-30 2.2E-35 187.7 21.4 164 10-173 1-169 (172)
76 smart00176 RAN Ran (Ras-relate 100.0 8.9E-31 1.9E-35 191.6 20.7 156 15-173 1-156 (200)
77 KOG0097 GTPase Rab14, small G 100.0 3.7E-31 8E-36 175.6 16.6 167 5-171 7-173 (215)
78 cd04114 Rab30 Rab30 subfamily. 100.0 2.7E-30 5.9E-35 185.0 22.3 164 7-170 5-168 (169)
79 cd04177 RSR1 RSR1 subgroup. R 100.0 1.4E-30 2.9E-35 186.5 20.4 161 9-170 1-163 (168)
80 cd00154 Rab Rab family. Rab G 100.0 1.4E-30 3.1E-35 183.9 20.1 159 10-168 1-159 (159)
81 cd01863 Rab18 Rab18 subfamily. 100.0 3.8E-30 8.2E-35 182.8 21.6 160 10-170 1-161 (161)
82 smart00174 RHO Rho (Ras homolo 100.0 1.7E-30 3.6E-35 186.9 19.8 158 12-171 1-172 (174)
83 cd01873 RhoBTB RhoBTB subfamil 100.0 2.2E-30 4.8E-35 189.1 20.2 158 9-169 2-194 (195)
84 cd04146 RERG_RasL11_like RERG/ 100.0 1.6E-30 3.5E-35 185.5 18.3 160 11-171 1-164 (165)
85 cd04103 Centaurin_gamma Centau 100.0 3.4E-30 7.4E-35 182.4 19.6 154 10-170 1-158 (158)
86 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5.2E-30 1.1E-34 184.3 20.7 157 10-168 1-171 (173)
87 KOG0081 GTPase Rab27, small G 100.0 1.5E-32 3.3E-37 185.4 6.8 169 6-174 6-184 (219)
88 cd01892 Miro2 Miro2 subfamily. 100.0 1.9E-30 4.1E-35 185.9 18.1 162 8-171 3-166 (169)
89 cd04135 Tc10 TC10 subfamily. 100.0 7.1E-30 1.5E-34 183.7 20.6 159 10-170 1-173 (174)
90 cd04148 RGK RGK subfamily. Th 100.0 5.4E-30 1.2E-34 190.7 20.1 163 10-174 1-166 (221)
91 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.2E-32 1.8E-36 176.8 6.5 174 13-186 1-175 (192)
92 cd04139 RalA_RalB RalA/RalB su 100.0 3.2E-29 6.8E-34 178.4 20.3 161 10-171 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 3.4E-29 7.4E-34 177.5 19.6 159 11-170 1-160 (160)
94 cd04147 Ras_dva Ras-dva subfam 100.0 7.5E-29 1.6E-33 182.0 20.1 164 11-175 1-167 (198)
95 cd01870 RhoA_like RhoA-like su 100.0 1.4E-28 3E-33 177.1 21.0 160 9-170 1-174 (175)
96 cd04129 Rho2 Rho2 subfamily. 100.0 1.3E-28 2.8E-33 179.2 20.8 164 9-174 1-176 (187)
97 PTZ00132 GTP-binding nuclear p 100.0 2.2E-28 4.9E-33 181.7 22.2 170 1-173 1-170 (215)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.7E-29 3.8E-34 183.1 15.4 167 8-177 2-176 (183)
99 cd04149 Arf6 Arf6 subfamily. 100.0 3.6E-29 7.7E-34 179.1 16.5 155 7-168 7-167 (168)
100 cd04137 RheB Rheb (Ras Homolog 100.0 1.6E-28 3.5E-33 177.6 20.0 163 10-173 2-165 (180)
101 smart00177 ARF ARF-like small 100.0 2.3E-29 5E-34 181.2 14.3 158 7-171 11-174 (175)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.1E-29 2.3E-34 181.1 12.4 153 11-168 1-163 (164)
103 cd04158 ARD1 ARD1 subfamily. 100.0 1.2E-28 2.6E-33 176.6 17.8 158 11-175 1-165 (169)
104 PLN00223 ADP-ribosylation fact 100.0 1.3E-28 2.9E-33 178.1 17.9 159 7-172 15-179 (181)
105 KOG0395 Ras-related GTPase [Ge 100.0 1.1E-28 2.3E-33 179.4 17.3 164 8-172 2-166 (196)
106 cd00157 Rho Rho (Ras homology) 100.0 4.2E-28 9.1E-33 173.8 19.8 157 10-168 1-170 (171)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.8E-29 1.3E-33 176.5 13.7 152 10-168 1-158 (159)
108 PTZ00133 ADP-ribosylation fact 100.0 8.1E-28 1.8E-32 174.1 18.3 158 7-171 15-178 (182)
109 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.7E-27 3.8E-32 174.2 19.9 149 10-158 1-177 (202)
110 cd04154 Arl2 Arl2 subfamily. 100.0 6.1E-28 1.3E-32 173.5 16.8 155 7-168 12-172 (173)
111 cd01893 Miro1 Miro1 subfamily. 100.0 1.6E-27 3.4E-32 170.3 18.7 160 10-172 1-165 (166)
112 PTZ00099 rab6; Provisional 100.0 3.2E-27 6.9E-32 169.7 19.4 145 32-176 3-147 (176)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.7E-27 3.7E-32 171.3 15.9 155 7-168 13-173 (174)
114 KOG4252 GTP-binding protein [S 100.0 5.4E-30 1.2E-34 176.3 2.7 176 1-177 12-187 (246)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.6E-27 5.6E-32 169.3 15.2 153 11-168 1-166 (167)
116 cd04157 Arl6 Arl6 subfamily. 100.0 1.8E-27 3.8E-32 169.2 14.0 152 11-168 1-161 (162)
117 cd00879 Sar1 Sar1 subfamily. 100.0 8.9E-27 1.9E-31 169.9 17.6 157 7-170 17-190 (190)
118 PF00025 Arf: ADP-ribosylation 100.0 1.5E-26 3.3E-31 166.4 18.0 157 7-170 12-175 (175)
119 KOG0393 Ras-related small GTPa 100.0 4.2E-27 9.1E-32 167.7 13.7 167 7-175 2-183 (198)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 6E-27 1.3E-31 166.2 14.4 152 11-168 1-159 (160)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.3E-26 4.9E-31 164.3 16.1 152 11-168 1-166 (167)
122 cd04151 Arl1 Arl1 subfamily. 99.9 7.5E-27 1.6E-31 165.4 13.4 151 11-168 1-157 (158)
123 smart00178 SAR Sar1p-like memb 99.9 4.6E-26 1E-30 165.3 17.3 156 7-169 15-183 (184)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.7E-26 3.6E-31 163.6 14.1 151 11-168 1-157 (158)
125 PLN00023 GTP-binding protein; 99.9 1.1E-25 2.4E-30 172.4 18.0 142 5-146 17-189 (334)
126 cd01897 NOG NOG1 is a nucleola 99.9 9.8E-26 2.1E-30 161.2 15.9 155 11-170 2-167 (168)
127 cd01898 Obg Obg subfamily. Th 99.9 1.6E-25 3.4E-30 160.4 15.4 158 11-170 2-170 (170)
128 PRK12299 obgE GTPase CgtA; Rev 99.9 2.1E-25 4.5E-30 174.4 16.7 163 10-173 159-330 (335)
129 cd04159 Arl10_like Arl10-like 99.9 2.5E-25 5.3E-30 157.1 15.6 152 11-168 1-158 (159)
130 cd01890 LepA LepA subfamily. 99.9 3.3E-25 7.2E-30 160.1 16.4 155 11-171 2-177 (179)
131 TIGR00231 small_GTP small GTP- 99.9 1.1E-24 2.5E-29 153.4 17.7 158 9-167 1-160 (161)
132 KOG0073 GTP-binding ADP-ribosy 99.9 1.1E-24 2.4E-29 148.0 16.0 161 7-172 14-179 (185)
133 cd01878 HflX HflX subfamily. 99.9 4.2E-25 9E-30 162.9 15.2 157 7-170 39-204 (204)
134 KOG0070 GTP-binding ADP-ribosy 99.9 3.8E-25 8.3E-30 153.9 13.8 162 5-173 13-180 (181)
135 cd04155 Arl3 Arl3 subfamily. 99.9 2.9E-24 6.4E-29 154.3 18.0 153 6-168 11-172 (173)
136 cd04171 SelB SelB subfamily. 99.9 1.1E-24 2.4E-29 154.9 15.3 152 10-168 1-163 (164)
137 COG1100 GTPase SAR1 and relate 99.9 6.4E-24 1.4E-28 158.2 18.5 166 8-173 4-187 (219)
138 PF02421 FeoB_N: Ferrous iron 99.9 1.4E-24 2.9E-29 151.1 11.8 148 10-166 1-156 (156)
139 PRK04213 GTP-binding protein; 99.9 1.5E-24 3.2E-29 159.6 12.0 162 1-175 1-196 (201)
140 cd00882 Ras_like_GTPase Ras-li 99.9 2.5E-23 5.5E-28 145.3 17.0 153 14-167 1-156 (157)
141 cd01879 FeoB Ferrous iron tran 99.9 1.4E-23 3.1E-28 148.3 15.6 148 14-170 1-156 (158)
142 TIGR02528 EutP ethanolamine ut 99.9 3.5E-24 7.6E-29 149.1 12.3 134 11-167 2-141 (142)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.3E-23 2.8E-28 150.1 15.0 157 11-171 2-166 (168)
144 TIGR00436 era GTP-binding prot 99.9 1.7E-23 3.6E-28 160.4 16.3 162 11-180 2-173 (270)
145 TIGR02729 Obg_CgtA Obg family 99.9 1.8E-23 4E-28 163.4 16.6 159 10-170 158-328 (329)
146 PRK15494 era GTPase Era; Provi 99.9 4E-23 8.6E-28 162.6 18.3 166 6-181 49-226 (339)
147 TIGR03156 GTP_HflX GTP-binding 99.9 2.7E-23 5.9E-28 163.8 17.1 153 9-169 189-350 (351)
148 cd01891 TypA_BipA TypA (tyrosi 99.9 2.2E-23 4.8E-28 152.5 13.4 147 10-160 3-171 (194)
149 KOG1673 Ras GTPases [General f 99.9 5.1E-23 1.1E-27 138.8 13.4 173 4-177 15-192 (205)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1E-22 2.2E-27 143.7 15.6 146 10-170 2-156 (157)
151 cd01881 Obg_like The Obg-like 99.9 2.6E-23 5.7E-28 149.5 12.7 156 14-170 1-176 (176)
152 KOG0075 GTP-binding ADP-ribosy 99.9 2.5E-23 5.5E-28 138.9 10.0 155 9-172 20-183 (186)
153 PF08477 Miro: Miro-like prote 99.9 1.1E-22 2.4E-27 137.3 13.0 114 11-125 1-119 (119)
154 cd01889 SelB_euk SelB subfamil 99.9 8.6E-23 1.9E-27 149.1 13.2 158 10-171 1-186 (192)
155 PRK03003 GTP-binding protein D 99.9 2E-22 4.2E-27 165.4 16.8 175 10-195 39-224 (472)
156 PRK03003 GTP-binding protein D 99.9 1.2E-22 2.5E-27 166.7 14.3 167 8-180 210-391 (472)
157 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.7E-22 7.9E-27 161.6 16.8 152 8-173 202-362 (442)
158 PRK05291 trmE tRNA modificatio 99.9 2E-22 4.4E-27 163.9 14.6 148 9-172 215-371 (449)
159 KOG0071 GTP-binding ADP-ribosy 99.9 6.9E-22 1.5E-26 131.1 14.0 159 7-172 15-179 (180)
160 PRK12298 obgE GTPase CgtA; Rev 99.9 8.7E-22 1.9E-26 156.9 17.4 166 11-178 161-340 (390)
161 PRK12297 obgE GTPase CgtA; Rev 99.9 1.2E-21 2.5E-26 157.1 18.1 160 11-175 160-331 (424)
162 COG1159 Era GTPase [General fu 99.9 6E-22 1.3E-26 148.2 15.1 170 6-181 3-182 (298)
163 cd00881 GTP_translation_factor 99.9 4.2E-22 9.1E-27 144.8 13.9 155 11-171 1-187 (189)
164 PRK15467 ethanolamine utilizat 99.9 4.5E-22 9.8E-27 140.8 13.6 146 11-178 3-154 (158)
165 cd01894 EngA1 EngA1 subfamily. 99.9 4.6E-22 1E-26 140.3 13.5 147 13-170 1-157 (157)
166 TIGR01393 lepA GTP-binding pro 99.9 8E-22 1.7E-26 164.8 17.0 157 10-172 4-181 (595)
167 PRK11058 GTPase HflX; Provisio 99.9 6.2E-22 1.4E-26 159.4 15.8 157 10-172 198-363 (426)
168 PRK12296 obgE GTPase CgtA; Rev 99.9 7.2E-22 1.6E-26 160.2 16.2 164 10-176 160-345 (500)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 9.1E-22 2E-26 144.8 13.9 161 10-172 1-200 (203)
170 PRK00454 engB GTP-binding prot 99.9 2.1E-21 4.5E-26 142.2 15.7 163 3-172 18-195 (196)
171 cd01895 EngA2 EngA2 subfamily. 99.9 4.4E-21 9.6E-26 137.3 16.8 155 9-169 2-173 (174)
172 PRK00089 era GTPase Era; Revie 99.9 2.7E-21 5.9E-26 150.0 16.7 168 7-180 3-180 (292)
173 TIGR03594 GTPase_EngA ribosome 99.9 1.9E-21 4.1E-26 158.5 16.4 165 8-179 171-352 (429)
174 TIGR00475 selB selenocysteine- 99.9 2.2E-21 4.8E-26 162.0 17.0 157 10-175 1-170 (581)
175 KOG3883 Ras family small GTPas 99.9 1.3E-20 2.7E-25 127.0 17.0 168 9-177 9-181 (198)
176 PRK00093 GTP-binding protein D 99.9 4.2E-21 9.1E-26 156.6 16.9 149 10-171 2-162 (435)
177 TIGR00487 IF-2 translation ini 99.9 6.1E-21 1.3E-25 158.9 17.8 154 8-169 86-248 (587)
178 PF00009 GTP_EFTU: Elongation 99.9 1.6E-21 3.4E-26 142.0 12.3 159 9-171 3-187 (188)
179 cd04163 Era Era subfamily. Er 99.9 7.9E-21 1.7E-25 135.0 15.6 156 9-170 3-168 (168)
180 TIGR03594 GTPase_EngA ribosome 99.9 7.5E-21 1.6E-25 155.0 17.1 152 11-173 1-162 (429)
181 PRK05433 GTP-binding protein L 99.9 1.1E-20 2.5E-25 158.1 17.1 158 10-173 8-186 (600)
182 COG1160 Predicted GTPases [Gen 99.9 6.6E-21 1.4E-25 150.1 14.4 177 10-197 4-193 (444)
183 PRK09554 feoB ferrous iron tra 99.9 3E-20 6.5E-25 158.9 18.4 156 7-171 1-168 (772)
184 cd04105 SR_beta Signal recogni 99.9 2.6E-20 5.7E-25 136.9 15.7 118 11-129 2-124 (203)
185 CHL00189 infB translation init 99.9 1.9E-20 4.1E-25 158.3 16.8 156 8-170 243-409 (742)
186 PRK05306 infB translation init 99.9 2.3E-20 5E-25 159.0 17.2 154 7-169 288-450 (787)
187 KOG0076 GTP-binding ADP-ribosy 99.9 2.4E-21 5.2E-26 133.1 8.9 164 6-173 14-189 (197)
188 TIGR03598 GTPase_YsxC ribosome 99.9 1.6E-20 3.5E-25 135.7 13.6 149 5-160 14-179 (179)
189 cd00880 Era_like Era (E. coli 99.9 2E-20 4.4E-25 131.7 13.6 152 14-170 1-163 (163)
190 TIGR00437 feoB ferrous iron tr 99.9 2.2E-20 4.7E-25 156.3 15.2 146 16-170 1-154 (591)
191 PRK09518 bifunctional cytidyla 99.9 6.1E-20 1.3E-24 157.3 18.2 155 8-173 274-438 (712)
192 PRK00093 GTP-binding protein D 99.8 6.6E-20 1.4E-24 149.6 16.5 163 8-178 172-351 (435)
193 PRK12317 elongation factor 1-a 99.8 3.1E-20 6.8E-25 150.9 14.3 155 6-163 3-197 (425)
194 TIGR00483 EF-1_alpha translati 99.8 4.8E-20 1E-24 149.8 14.5 154 7-163 5-199 (426)
195 KOG4423 GTP-binding protein-li 99.8 1.8E-22 4E-27 140.1 -0.2 167 8-174 24-197 (229)
196 PRK09518 bifunctional cytidyla 99.8 1.3E-19 2.7E-24 155.3 16.9 164 8-179 449-629 (712)
197 COG0486 ThdF Predicted GTPase 99.8 1.3E-19 2.9E-24 143.2 14.6 152 10-173 218-378 (454)
198 COG2229 Predicted GTPase [Gene 99.8 6.7E-19 1.5E-23 122.7 15.9 160 4-169 5-176 (187)
199 cd04166 CysN_ATPS CysN_ATPS su 99.8 8.8E-20 1.9E-24 134.8 12.3 147 11-162 1-185 (208)
200 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 6.4E-20 1.4E-24 127.9 10.5 167 7-176 8-174 (216)
201 cd01896 DRG The developmentall 99.8 1.2E-18 2.6E-23 130.5 17.2 152 11-171 2-226 (233)
202 TIGR01394 TypA_BipA GTP-bindin 99.8 1.8E-19 4E-24 150.5 13.8 159 11-173 3-193 (594)
203 KOG0072 GTP-binding ADP-ribosy 99.8 1.5E-20 3.2E-25 125.3 5.9 161 8-173 17-181 (182)
204 PRK10218 GTP-binding protein; 99.8 6.6E-19 1.4E-23 147.0 16.9 160 10-173 6-197 (607)
205 TIGR03680 eif2g_arch translati 99.8 2.4E-19 5.2E-24 144.6 13.5 163 7-171 2-196 (406)
206 cd01884 EF_Tu EF-Tu subfamily. 99.8 8.7E-19 1.9E-23 127.8 14.8 145 9-159 2-171 (195)
207 COG1160 Predicted GTPases [Gen 99.8 1.1E-18 2.5E-23 137.6 16.0 167 8-180 177-360 (444)
208 PRK10512 selenocysteinyl-tRNA- 99.8 1E-18 2.2E-23 146.7 16.1 155 11-173 2-168 (614)
209 PRK04000 translation initiatio 99.8 7.6E-19 1.6E-23 141.7 14.5 164 6-172 6-202 (411)
210 cd01876 YihA_EngB The YihA (En 99.8 1.2E-18 2.6E-23 124.1 14.0 151 11-170 1-170 (170)
211 TIGR00491 aIF-2 translation in 99.8 9.5E-19 2.1E-23 145.7 15.4 155 10-171 5-216 (590)
212 KOG1423 Ras-like GTPase ERA [C 99.8 2E-18 4.2E-23 129.3 15.3 170 7-180 70-280 (379)
213 KOG0074 GTP-binding ADP-ribosy 99.8 4.3E-19 9.3E-24 118.1 9.9 161 7-171 15-179 (185)
214 cd01883 EF1_alpha Eukaryotic e 99.8 6.5E-19 1.4E-23 131.1 11.4 146 11-160 1-194 (219)
215 cd04168 TetM_like Tet(M)-like 99.8 2.7E-18 5.9E-23 128.9 14.4 111 11-127 1-129 (237)
216 cd04167 Snu114p Snu114p subfam 99.8 1.2E-18 2.6E-23 129.2 12.2 113 11-127 2-136 (213)
217 KOG1489 Predicted GTP-binding 99.8 4.7E-18 1E-22 127.8 13.9 155 11-169 198-365 (366)
218 PF10662 PduV-EutP: Ethanolami 99.8 2.3E-18 5E-23 117.4 10.5 135 11-167 3-142 (143)
219 PRK04004 translation initiatio 99.8 1.4E-17 3.1E-22 139.1 16.5 157 7-170 4-217 (586)
220 PRK12735 elongation factor Tu; 99.8 1.2E-17 2.6E-22 134.4 15.5 159 7-171 10-203 (396)
221 PRK12736 elongation factor Tu; 99.8 1.1E-17 2.4E-22 134.5 15.0 159 7-171 10-201 (394)
222 COG0370 FeoB Fe2+ transport sy 99.8 1.6E-17 3.4E-22 136.7 15.9 159 7-174 1-167 (653)
223 TIGR00485 EF-Tu translation el 99.8 1.3E-17 2.7E-22 134.3 14.6 146 6-157 9-179 (394)
224 KOG1707 Predicted Ras related/ 99.8 2.4E-18 5.2E-23 138.4 10.0 169 1-171 1-175 (625)
225 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.6E-17 3.5E-22 123.6 13.1 155 11-169 1-221 (224)
226 COG2262 HflX GTPases [General 99.7 8.9E-17 1.9E-21 125.2 15.6 157 10-173 193-358 (411)
227 CHL00071 tufA elongation facto 99.7 6.2E-17 1.3E-21 130.8 15.2 147 6-158 9-180 (409)
228 TIGR02034 CysN sulfate adenyly 99.7 3.8E-17 8.2E-22 131.8 13.9 147 10-161 1-187 (406)
229 COG1084 Predicted GTPase [Gene 99.7 7.1E-17 1.5E-21 122.3 13.9 159 8-172 167-337 (346)
230 COG0218 Predicted GTPase [Gene 99.7 1.1E-16 2.5E-21 114.0 14.2 162 5-173 20-199 (200)
231 PRK05124 cysN sulfate adenylyl 99.7 4.3E-17 9.4E-22 133.5 13.4 151 7-162 25-216 (474)
232 COG5256 TEF1 Translation elong 99.7 5.9E-17 1.3E-21 126.2 12.6 154 7-163 5-203 (428)
233 KOG0462 Elongation factor-type 99.7 9.5E-17 2.1E-21 128.5 14.0 158 8-172 59-236 (650)
234 PLN00043 elongation factor 1-a 99.7 9E-17 2E-21 130.6 14.2 149 7-161 5-203 (447)
235 cd01885 EF2 EF2 (for archaea a 99.7 4.7E-17 1E-21 120.7 11.4 113 11-127 2-138 (222)
236 PTZ00141 elongation factor 1- 99.7 1.4E-16 3E-21 129.6 15.0 150 7-161 5-203 (446)
237 cd01850 CDC_Septin CDC/Septin. 99.7 1.6E-16 3.5E-21 121.8 14.3 143 9-156 4-187 (276)
238 PRK00049 elongation factor Tu; 99.7 2.2E-16 4.8E-21 127.0 15.5 159 7-171 10-203 (396)
239 cd04104 p47_IIGP_like p47 (47- 99.7 1.6E-16 3.5E-21 116.4 13.5 158 9-174 1-187 (197)
240 PRK05506 bifunctional sulfate 99.7 8.1E-17 1.7E-21 136.7 13.3 153 4-161 19-211 (632)
241 PLN03126 Elongation factor Tu; 99.7 3.1E-16 6.8E-21 128.1 16.2 146 7-158 79-249 (478)
242 cd04169 RF3 RF3 subfamily. Pe 99.7 2.8E-16 6E-21 119.9 14.6 116 10-129 3-138 (267)
243 KOG0077 Vesicle coat complex C 99.7 4.9E-17 1.1E-21 111.2 9.2 156 8-170 19-192 (193)
244 PLN03127 Elongation factor Tu; 99.7 3.9E-16 8.4E-21 126.9 15.4 159 7-171 59-252 (447)
245 PRK00741 prfC peptide chain re 99.7 4.4E-16 9.5E-21 128.7 15.5 117 7-127 8-144 (526)
246 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.8E-16 6.2E-21 116.5 12.8 158 11-171 1-176 (232)
247 PTZ00327 eukaryotic translatio 99.7 2.6E-16 5.6E-21 127.8 13.2 166 5-172 30-234 (460)
248 COG0532 InfB Translation initi 99.7 7.7E-16 1.7E-20 123.6 15.6 157 10-173 6-172 (509)
249 COG0536 Obg Predicted GTPase [ 99.7 2E-16 4.2E-21 120.5 11.4 163 11-174 161-336 (369)
250 cd01886 EF-G Elongation factor 99.7 3.2E-16 6.9E-21 119.7 12.7 112 11-128 1-130 (270)
251 cd01899 Ygr210 Ygr210 subfamil 99.7 7.4E-16 1.6E-20 119.8 14.6 165 12-180 1-278 (318)
252 PRK13351 elongation factor G; 99.7 1E-15 2.2E-20 131.3 15.6 118 5-128 4-139 (687)
253 cd04170 EF-G_bact Elongation f 99.7 7.4E-17 1.6E-21 123.7 7.8 154 11-173 1-175 (268)
254 COG1163 DRG Predicted GTPase [ 99.7 2.5E-15 5.4E-20 113.7 15.1 156 8-172 62-290 (365)
255 PF01926 MMR_HSR1: 50S ribosom 99.7 1.4E-15 3E-20 102.1 12.1 106 11-123 1-116 (116)
256 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 4.4E-15 9.6E-20 108.8 15.2 160 10-173 1-186 (196)
257 TIGR00503 prfC peptide chain r 99.7 2.4E-15 5.3E-20 124.4 15.2 118 6-127 8-145 (527)
258 COG0481 LepA Membrane GTPase L 99.7 1.9E-15 4.2E-20 119.3 13.4 160 8-173 8-188 (603)
259 PRK12739 elongation factor G; 99.7 6.1E-15 1.3E-19 126.3 17.3 117 6-128 5-139 (691)
260 KOG1145 Mitochondrial translat 99.7 4.4E-15 9.6E-20 119.1 14.8 157 9-173 153-318 (683)
261 KOG1191 Mitochondrial GTPase [ 99.6 1.7E-15 3.7E-20 120.1 10.0 163 9-173 268-452 (531)
262 PRK09602 translation-associate 99.6 2E-14 4.3E-19 115.1 16.3 166 10-179 2-279 (396)
263 TIGR00484 EF-G translation elo 99.6 9.6E-15 2.1E-19 125.1 14.7 120 4-129 5-142 (689)
264 PRK00007 elongation factor G; 99.6 4.9E-14 1.1E-18 120.8 18.3 116 6-127 7-140 (693)
265 COG3596 Predicted GTPase [Gene 99.6 3.7E-15 8E-20 110.6 9.6 163 6-172 36-223 (296)
266 PF09439 SRPRB: Signal recogni 99.6 1.4E-15 3E-20 108.3 6.3 119 8-130 2-128 (181)
267 PRK09866 hypothetical protein; 99.6 7.4E-14 1.6E-18 115.2 16.6 110 58-169 230-351 (741)
268 COG1217 TypA Predicted membran 99.6 1.1E-14 2.4E-19 114.8 10.4 161 10-174 6-198 (603)
269 PRK12740 elongation factor G; 99.6 5.8E-14 1.3E-18 120.3 14.9 107 15-127 1-125 (668)
270 COG2895 CysN GTPases - Sulfate 99.6 8.2E-14 1.8E-18 106.6 12.5 148 8-160 5-192 (431)
271 KOG0090 Signal recognition par 99.5 2E-13 4.3E-18 97.6 12.8 155 10-170 39-238 (238)
272 KOG3905 Dynein light intermedi 99.5 3E-13 6.6E-18 102.5 14.1 165 10-177 53-296 (473)
273 KOG0458 Elongation factor 1 al 99.5 1.7E-13 3.7E-18 110.8 12.5 154 8-162 176-373 (603)
274 TIGR00991 3a0901s02IAP34 GTP-b 99.5 6.6E-13 1.4E-17 101.8 14.0 126 6-133 35-172 (313)
275 cd01853 Toc34_like Toc34-like 99.5 6.6E-13 1.4E-17 100.2 13.2 123 7-131 29-166 (249)
276 PRK14845 translation initiatio 99.5 8.4E-13 1.8E-17 115.7 15.5 144 21-171 473-673 (1049)
277 TIGR00490 aEF-2 translation el 99.5 1.1E-13 2.3E-18 119.1 9.4 115 9-127 19-151 (720)
278 COG4917 EutP Ethanolamine util 99.5 1.8E-13 3.9E-18 89.6 8.0 137 11-169 3-144 (148)
279 TIGR00101 ureG urease accessor 99.5 1.1E-12 2.3E-17 96.1 12.7 103 58-171 92-196 (199)
280 PF05783 DLIC: Dynein light in 99.5 3.8E-12 8.2E-17 103.5 17.1 168 6-176 22-269 (472)
281 PF04548 AIG1: AIG1 family; I 99.5 2.4E-13 5.2E-18 100.7 9.3 162 10-175 1-190 (212)
282 PTZ00258 GTP-binding protein; 99.5 1.2E-12 2.5E-17 104.1 13.6 84 9-92 21-126 (390)
283 TIGR00157 ribosome small subun 99.5 1.8E-13 3.9E-18 103.3 8.5 99 69-171 24-123 (245)
284 PRK07560 elongation factor EF- 99.5 6.1E-13 1.3E-17 114.7 12.7 114 10-127 21-152 (731)
285 cd00066 G-alpha G protein alph 99.5 3.8E-12 8.3E-17 99.6 14.5 115 57-171 160-311 (317)
286 PRK13768 GTPase; Provisional 99.4 9.6E-13 2.1E-17 99.9 10.7 116 59-174 98-250 (253)
287 PRK09435 membrane ATPase/prote 99.4 1.7E-12 3.7E-17 101.3 11.0 104 57-171 148-260 (332)
288 PLN00116 translation elongatio 99.4 9.7E-13 2.1E-17 114.9 10.4 116 8-127 18-163 (843)
289 PTZ00416 elongation factor 2; 99.4 9.2E-13 2E-17 114.8 10.2 116 8-127 18-157 (836)
290 PRK09601 GTP-binding protein Y 99.4 1.1E-11 2.3E-16 97.6 15.0 83 10-92 3-107 (364)
291 KOG1490 GTP-binding protein CR 99.4 1E-12 2.2E-17 104.8 9.2 161 6-169 165-339 (620)
292 KOG0461 Selenocysteine-specifi 99.4 1E-11 2.2E-16 95.1 13.7 166 1-172 1-194 (522)
293 smart00275 G_alpha G protein a 99.4 1.5E-11 3.2E-16 97.1 14.8 120 50-171 178-334 (342)
294 KOG1707 Predicted Ras related/ 99.4 1.2E-11 2.5E-16 100.4 14.0 160 8-172 424-584 (625)
295 COG0378 HypB Ni2+-binding GTPa 99.4 1.4E-12 3E-17 92.6 7.3 150 10-170 14-200 (202)
296 TIGR00073 hypB hydrogenase acc 99.4 1E-11 2.2E-16 91.7 12.2 151 9-170 22-206 (207)
297 cd01882 BMS1 Bms1. Bms1 is an 99.4 1E-11 2.2E-16 92.7 12.1 139 7-157 37-182 (225)
298 PF05049 IIGP: Interferon-indu 99.4 7.6E-12 1.7E-16 98.5 11.6 159 8-174 34-221 (376)
299 KOG1532 GTPase XAB1, interacts 99.4 1.8E-12 3.9E-17 96.3 6.6 118 58-177 116-270 (366)
300 PF03029 ATP_bind_1: Conserved 99.3 3.6E-13 7.9E-18 101.0 2.4 110 59-170 92-236 (238)
301 PF00735 Septin: Septin; Inte 99.3 1.7E-11 3.6E-16 94.2 10.9 142 9-154 4-184 (281)
302 TIGR02836 spore_IV_A stage IV 99.3 9.9E-11 2.2E-15 92.5 15.2 159 8-171 16-237 (492)
303 cd01900 YchF YchF subfamily. 99.3 2.1E-11 4.5E-16 93.0 11.3 81 12-92 1-103 (274)
304 COG5257 GCD11 Translation init 99.3 1.1E-11 2.3E-16 94.1 9.3 163 7-175 8-206 (415)
305 KOG1144 Translation initiation 99.3 1.2E-11 2.6E-16 102.7 9.7 161 7-171 473-687 (1064)
306 PF00350 Dynamin_N: Dynamin fa 99.3 2.7E-11 5.9E-16 86.4 10.4 63 59-124 102-168 (168)
307 smart00010 small_GTPase Small 99.3 7.4E-11 1.6E-15 79.7 11.3 114 10-160 1-115 (124)
308 TIGR00750 lao LAO/AO transport 99.3 7.5E-11 1.6E-15 91.8 11.4 104 57-171 126-238 (300)
309 COG3276 SelB Selenocysteine-sp 99.3 5.8E-11 1.3E-15 93.7 10.8 155 11-171 2-162 (447)
310 COG0012 Predicted GTPase, prob 99.3 3.8E-10 8.2E-15 87.9 14.5 84 9-92 2-108 (372)
311 COG0480 FusA Translation elong 99.2 5E-11 1.1E-15 101.1 9.9 117 6-127 7-141 (697)
312 TIGR00993 3a0901s04IAP86 chlor 99.2 2.3E-10 5E-15 95.2 13.4 119 9-129 118-251 (763)
313 COG1703 ArgK Putative periplas 99.2 1.4E-10 3E-15 87.6 9.9 106 56-172 142-255 (323)
314 KOG0082 G-protein alpha subuni 99.2 8.9E-10 1.9E-14 85.9 14.3 127 43-171 182-344 (354)
315 smart00053 DYNc Dynamin, GTPas 99.2 2.5E-10 5.4E-15 85.4 10.9 69 58-129 125-207 (240)
316 KOG3886 GTP-binding protein [S 99.2 7.7E-11 1.7E-15 85.6 7.6 148 8-157 3-165 (295)
317 PF03308 ArgK: ArgK protein; 99.2 1.3E-11 2.9E-16 91.7 3.7 152 8-171 28-230 (266)
318 COG5019 CDC3 Septin family pro 99.2 5.2E-10 1.1E-14 86.7 11.7 143 9-158 23-206 (373)
319 COG0050 TufB GTPases - transla 99.2 7.7E-10 1.7E-14 83.3 12.2 140 7-155 10-177 (394)
320 PRK10463 hydrogenase nickel in 99.2 1.9E-10 4.1E-15 87.8 8.5 55 115-169 231-287 (290)
321 KOG1547 Septin CDC10 and relat 99.1 3.3E-10 7.2E-15 82.8 9.1 151 9-164 46-236 (336)
322 cd01855 YqeH YqeH. YqeH is an 99.1 4.1E-10 8.9E-15 82.0 8.7 94 71-171 24-125 (190)
323 COG4108 PrfC Peptide chain rel 99.1 6.4E-10 1.4E-14 87.8 10.1 138 7-150 10-167 (528)
324 KOG0705 GTPase-activating prot 99.1 1.7E-10 3.8E-15 93.1 7.1 161 6-173 27-191 (749)
325 PRK12289 GTPase RsgA; Reviewed 99.1 3.4E-10 7.5E-15 89.4 8.1 93 73-170 81-174 (352)
326 KOG1486 GTP-binding protein DR 99.1 7.4E-09 1.6E-13 76.4 14.3 155 8-171 61-288 (364)
327 KOG2655 Septin family protein 99.1 3.9E-09 8.5E-14 82.4 12.4 143 9-156 21-202 (366)
328 KOG0468 U5 snRNP-specific prot 99.1 8.7E-10 1.9E-14 91.0 9.0 114 9-126 128-261 (971)
329 KOG1954 Endocytosis/signaling 99.0 6.4E-10 1.4E-14 86.1 6.9 121 8-131 57-228 (532)
330 KOG0410 Predicted GTP binding 99.0 7.3E-10 1.6E-14 84.4 6.4 150 10-171 179-341 (410)
331 PRK12288 GTPase RsgA; Reviewed 99.0 2.9E-09 6.2E-14 84.2 9.3 89 79-170 118-207 (347)
332 cd01859 MJ1464 MJ1464. This f 99.0 1.1E-09 2.4E-14 77.3 6.2 95 72-172 3-97 (156)
333 cd01854 YjeQ_engC YjeQ/EngC. 99.0 4.6E-09 1E-13 81.3 8.9 89 76-169 73-162 (287)
334 KOG0463 GTP-binding protein GP 98.9 1.6E-08 3.5E-13 78.8 10.5 169 6-181 130-367 (641)
335 PRK00098 GTPase RsgA; Reviewed 98.9 7E-09 1.5E-13 80.7 8.2 88 78-169 77-165 (298)
336 KOG3887 Predicted small GTPase 98.9 2.2E-08 4.9E-13 73.5 9.3 158 10-171 28-202 (347)
337 COG5258 GTPBP1 GTPase [General 98.9 5.2E-08 1.1E-12 76.1 11.4 159 6-168 114-336 (527)
338 cd01858 NGP_1 NGP-1. Autoanti 98.8 8.7E-09 1.9E-13 72.7 6.3 89 78-171 5-95 (157)
339 PF00503 G-alpha: G-protein al 98.8 3E-08 6.4E-13 80.1 9.9 123 45-169 224-388 (389)
340 COG5192 BMS1 GTP-binding prote 98.8 2.9E-08 6.2E-13 81.1 9.6 138 5-155 65-210 (1077)
341 KOG0448 Mitofusin 1 GTPase, in 98.8 8.6E-08 1.9E-12 79.7 12.4 144 9-156 109-311 (749)
342 KOG0467 Translation elongation 98.8 1.7E-08 3.7E-13 84.6 7.9 120 2-125 2-135 (887)
343 KOG1143 Predicted translation 98.8 3.9E-08 8.4E-13 76.6 8.9 161 7-171 165-388 (591)
344 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.6E-08 5.5E-13 70.3 6.9 55 8-67 101-156 (157)
345 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 2.1E-08 4.6E-13 69.5 6.3 53 11-68 85-138 (141)
346 TIGR03597 GTPase_YqeH ribosome 98.8 5.2E-08 1.1E-12 77.8 8.8 95 68-169 50-151 (360)
347 cd04178 Nucleostemin_like Nucl 98.7 3.8E-08 8.2E-13 70.4 6.8 54 9-67 117-171 (172)
348 KOG0460 Mitochondrial translat 98.7 8.6E-08 1.9E-12 73.8 8.6 142 8-154 53-218 (449)
349 cd01849 YlqF_related_GTPase Yl 98.7 2.8E-08 6.2E-13 70.0 5.6 84 83-170 1-84 (155)
350 TIGR00092 GTP-binding protein 98.7 6.4E-08 1.4E-12 76.5 7.3 83 10-92 3-108 (368)
351 cd01856 YlqF YlqF. Proteins o 98.7 6.6E-08 1.4E-12 69.2 6.1 91 73-171 11-101 (171)
352 KOG2486 Predicted GTPase [Gene 98.6 7.2E-08 1.6E-12 72.3 5.8 157 6-170 133-315 (320)
353 KOG0099 G protein subunit Galp 98.6 1.4E-07 3.1E-12 70.1 7.1 81 45-127 191-282 (379)
354 cd01855 YqeH YqeH. YqeH is an 98.6 6E-08 1.3E-12 70.6 5.1 54 9-67 127-189 (190)
355 KOG1491 Predicted GTP-binding 98.6 1.4E-07 3.1E-12 72.6 7.1 86 8-93 19-126 (391)
356 cd01851 GBP Guanylate-binding 98.6 9.6E-07 2.1E-11 65.9 11.1 84 10-93 8-103 (224)
357 cd01856 YlqF YlqF. Proteins o 98.6 1.9E-07 4.2E-12 66.8 7.0 56 8-68 114-170 (171)
358 TIGR03596 GTPase_YlqF ribosome 98.6 2.3E-07 4.9E-12 71.6 7.5 56 8-68 117-173 (276)
359 TIGR03596 GTPase_YlqF ribosome 98.6 1.6E-07 3.6E-12 72.3 6.6 94 72-173 12-105 (276)
360 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.7E-07 5.8E-12 71.5 7.8 57 8-69 120-177 (287)
361 KOG1487 GTP-binding protein DR 98.6 6.8E-07 1.5E-11 66.5 9.4 152 10-171 60-281 (358)
362 KOG0459 Polypeptide release fa 98.6 3E-07 6.5E-12 72.3 7.6 155 7-164 77-279 (501)
363 PF03193 DUF258: Protein of un 98.5 8.4E-08 1.8E-12 67.3 4.0 59 10-71 36-100 (161)
364 KOG0464 Elongation factor G [T 98.5 1.2E-07 2.6E-12 74.9 5.2 115 10-128 38-168 (753)
365 TIGR03348 VI_IcmF type VI secr 98.5 5.8E-07 1.3E-11 81.7 10.4 115 12-130 114-259 (1169)
366 cd01859 MJ1464 MJ1464. This f 98.5 3.5E-07 7.6E-12 64.4 7.1 56 8-67 100-155 (156)
367 cd01849 YlqF_related_GTPase Yl 98.5 2.8E-07 6E-12 64.9 6.2 56 7-67 98-154 (155)
368 PF09547 Spore_IV_A: Stage IV 98.5 1.3E-05 2.9E-10 64.0 15.5 156 9-170 17-236 (492)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 6.1E-07 1.3E-11 62.1 6.8 77 76-158 6-84 (141)
370 COG1618 Predicted nucleotide k 98.5 2.5E-05 5.5E-10 54.3 14.4 148 8-172 4-177 (179)
371 PRK10416 signal recognition pa 98.5 1.5E-06 3.4E-11 68.0 9.5 95 57-163 196-302 (318)
372 cd03112 CobW_like The function 98.4 1.2E-06 2.6E-11 61.8 7.8 64 57-126 86-158 (158)
373 PRK01889 GTPase RsgA; Reviewed 98.4 1.1E-06 2.4E-11 70.1 8.3 84 79-167 110-193 (356)
374 KOG0466 Translation initiation 98.4 1.8E-07 3.9E-12 71.1 3.5 113 59-177 126-247 (466)
375 PRK13796 GTPase YqeH; Provisio 98.4 2E-06 4.3E-11 68.9 9.5 94 69-170 57-158 (365)
376 PRK09563 rbgA GTPase YlqF; Rev 98.4 4.2E-07 9.1E-12 70.5 5.2 101 65-173 7-108 (287)
377 KOG0465 Mitochondrial elongati 98.4 7.4E-07 1.6E-11 73.4 6.3 119 8-130 38-172 (721)
378 PRK12288 GTPase RsgA; Reviewed 98.4 9.6E-07 2.1E-11 70.0 6.5 58 12-72 208-271 (347)
379 PRK14974 cell division protein 98.4 6.2E-07 1.3E-11 70.6 5.4 94 58-163 223-322 (336)
380 KOG0085 G protein subunit Galp 98.4 1.9E-07 4E-12 68.4 2.0 116 57-172 198-350 (359)
381 TIGR00064 ftsY signal recognit 98.3 2E-06 4.4E-11 66.0 7.6 95 57-163 154-260 (272)
382 COG1161 Predicted GTPases [Gen 98.3 1.3E-06 2.9E-11 68.7 6.5 56 8-68 131-187 (322)
383 COG1162 Predicted GTPases [Gen 98.3 4.4E-06 9.6E-11 64.0 7.8 109 73-184 71-180 (301)
384 TIGR01425 SRP54_euk signal rec 98.3 6.5E-06 1.4E-10 66.7 8.8 64 57-126 182-251 (429)
385 TIGR00157 ribosome small subun 98.2 2.2E-06 4.7E-11 64.9 5.7 25 10-34 121-145 (245)
386 KOG4273 Uncharacterized conser 98.2 2.9E-05 6.3E-10 57.8 11.1 158 9-170 4-221 (418)
387 PF06858 NOG1: Nucleolar GTP-b 98.2 5.6E-06 1.2E-10 47.1 5.7 44 81-125 13-58 (58)
388 PRK12289 GTPase RsgA; Reviewed 98.2 2.4E-06 5.1E-11 67.9 5.7 55 11-70 174-236 (352)
389 COG1162 Predicted GTPases [Gen 98.2 2.5E-06 5.4E-11 65.4 5.3 58 11-71 166-229 (301)
390 KOG1534 Putative transcription 98.2 4.7E-06 1E-10 60.3 6.2 123 59-181 99-261 (273)
391 PRK13695 putative NTPase; Prov 98.2 6.5E-05 1.4E-09 53.9 12.0 22 10-31 1-22 (174)
392 PF11111 CENP-M: Centromere pr 98.2 0.00014 3E-09 51.2 12.8 146 2-171 8-153 (176)
393 TIGR03597 GTPase_YqeH ribosome 98.2 5.2E-06 1.1E-10 66.4 6.3 55 10-69 155-215 (360)
394 COG3523 IcmF Type VI protein s 98.1 9.5E-06 2.1E-10 72.7 8.2 117 12-130 128-272 (1188)
395 cd03115 SRP The signal recogni 98.1 3.4E-05 7.4E-10 55.2 9.7 84 57-150 82-171 (173)
396 KOG0469 Elongation factor 2 [T 98.1 7E-06 1.5E-10 66.6 6.5 113 10-126 20-162 (842)
397 PRK13796 GTPase YqeH; Provisio 98.1 4.7E-06 1E-10 66.7 5.5 55 10-69 161-221 (365)
398 PRK14722 flhF flagellar biosyn 98.1 1.7E-05 3.7E-10 63.3 8.5 139 10-152 138-315 (374)
399 cd03110 Fer4_NifH_child This p 98.1 0.0001 2.2E-09 53.1 11.7 85 56-149 91-175 (179)
400 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.1E-05 2.4E-10 62.6 6.0 59 10-71 162-226 (287)
401 PRK11537 putative GTP-binding 98.0 8.1E-05 1.8E-09 58.5 10.9 95 58-163 91-196 (318)
402 KOG3859 Septins (P-loop GTPase 98.0 1.3E-05 2.9E-10 60.4 6.0 119 8-131 41-193 (406)
403 COG3640 CooC CO dehydrogenase 98.0 3.3E-05 7.2E-10 57.0 7.6 63 58-126 134-197 (255)
404 PRK12727 flagellar biosynthesi 98.0 8.9E-05 1.9E-09 61.5 10.9 84 57-152 428-518 (559)
405 cd03114 ArgK-like The function 98.0 3.2E-05 7E-10 54.0 7.3 58 57-125 91-148 (148)
406 COG0523 Putative GTPases (G3E 98.0 0.00013 2.8E-09 57.3 11.1 97 58-163 85-193 (323)
407 PRK00098 GTPase RsgA; Reviewed 98.0 1.7E-05 3.7E-10 61.8 5.8 58 10-70 165-228 (298)
408 PF03266 NTPase_1: NTPase; In 97.9 5.3E-05 1.1E-09 54.0 7.2 135 11-159 1-163 (168)
409 KOG0447 Dynamin-like GTP bindi 97.9 0.00037 8E-09 57.5 12.6 82 58-142 412-507 (980)
410 PRK00771 signal recognition pa 97.9 3.1E-05 6.8E-10 63.2 6.6 86 58-153 176-267 (437)
411 PF02492 cobW: CobW/HypB/UreG, 97.9 2.3E-05 5E-10 56.4 5.2 81 58-145 85-171 (178)
412 PRK11889 flhF flagellar biosyn 97.9 2.4E-05 5.1E-10 62.6 5.4 85 58-152 321-411 (436)
413 PRK12726 flagellar biosynthesi 97.8 8.8E-05 1.9E-09 59.1 7.6 85 58-152 286-376 (407)
414 PF00448 SRP54: SRP54-type pro 97.8 3.1E-05 6.7E-10 56.6 4.6 85 58-152 84-174 (196)
415 PRK10867 signal recognition pa 97.8 0.0003 6.4E-09 57.5 10.1 87 57-153 183-275 (433)
416 cd02038 FleN-like FleN is a me 97.8 0.00013 2.9E-09 50.3 7.1 105 14-126 5-109 (139)
417 PRK05703 flhF flagellar biosyn 97.7 0.00024 5.2E-09 58.1 9.2 85 58-152 300-391 (424)
418 TIGR00959 ffh signal recogniti 97.7 6.7E-05 1.4E-09 61.1 5.2 87 57-153 182-274 (428)
419 PRK12724 flagellar biosynthesi 97.7 0.00018 3.9E-09 58.2 7.5 134 9-152 223-393 (432)
420 cd02042 ParA ParA and ParB of 97.7 0.00026 5.6E-09 46.1 7.0 82 12-105 2-84 (104)
421 KOG2485 Conserved ATP/GTP bind 97.7 8.9E-05 1.9E-09 56.9 5.2 59 8-68 142-206 (335)
422 COG1419 FlhF Flagellar GTP-bin 97.6 0.0012 2.6E-08 52.9 11.1 108 58-175 282-398 (407)
423 PRK14721 flhF flagellar biosyn 97.6 0.00028 6.1E-09 57.3 7.7 85 58-152 270-360 (420)
424 PRK12723 flagellar biosynthesi 97.6 0.00063 1.4E-08 54.8 9.2 86 57-152 254-346 (388)
425 PRK06731 flhF flagellar biosyn 97.6 0.00044 9.6E-09 53.0 8.0 86 57-152 154-245 (270)
426 PF13555 AAA_29: P-loop contai 97.6 7.8E-05 1.7E-09 43.5 2.9 23 11-33 25-47 (62)
427 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00068 1.5E-08 43.1 7.6 68 12-93 2-70 (99)
428 cd00009 AAA The AAA+ (ATPases 97.5 0.00071 1.5E-08 46.3 8.0 26 9-34 19-44 (151)
429 PRK14723 flhF flagellar biosyn 97.5 0.00053 1.1E-08 59.5 8.4 87 58-152 264-357 (767)
430 TIGR02475 CobW cobalamin biosy 97.5 0.0014 3E-08 52.2 10.0 98 58-164 93-223 (341)
431 PRK06995 flhF flagellar biosyn 97.5 0.00046 9.9E-09 57.0 7.2 85 58-152 335-425 (484)
432 KOG1424 Predicted GTP-binding 97.5 0.00016 3.5E-09 59.0 4.4 53 10-67 315-368 (562)
433 COG0563 Adk Adenylate kinase a 97.5 0.0001 2.2E-09 53.0 2.9 23 10-32 1-23 (178)
434 PF13207 AAA_17: AAA domain; P 97.4 0.00012 2.5E-09 49.1 2.9 22 11-32 1-22 (121)
435 KOG2484 GTPase [General functi 97.4 0.00013 2.7E-09 57.8 3.3 58 7-68 250-307 (435)
436 PRK08118 topology modulation p 97.4 0.00012 2.7E-09 52.1 3.0 22 10-31 2-23 (167)
437 cd03111 CpaE_like This protein 97.4 0.00092 2E-08 43.8 7.0 62 59-123 44-106 (106)
438 KOG0780 Signal recognition par 97.4 0.00043 9.4E-09 54.8 6.1 52 56-107 182-239 (483)
439 PRK07261 topology modulation p 97.4 0.00014 2.9E-09 52.1 3.0 22 10-31 1-22 (171)
440 PF13671 AAA_33: AAA domain; P 97.4 0.00013 2.8E-09 50.3 2.7 21 12-32 2-22 (143)
441 cd04178 Nucleostemin_like Nucl 97.4 0.00034 7.3E-09 50.1 4.8 45 83-129 1-45 (172)
442 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0032 6.9E-08 45.3 9.2 25 10-34 26-50 (177)
443 PF13521 AAA_28: AAA domain; P 97.3 0.00015 3.2E-09 51.4 2.3 22 11-32 1-22 (163)
444 COG1136 SalX ABC-type antimicr 97.2 0.00025 5.4E-09 52.6 2.9 23 11-33 33-55 (226)
445 cd02019 NK Nucleoside/nucleoti 97.2 0.00034 7.3E-09 42.1 2.9 21 12-32 2-22 (69)
446 cd02036 MinD Bacterial cell di 97.2 0.012 2.6E-07 42.0 11.4 84 59-149 64-147 (179)
447 COG1161 Predicted GTPases [Gen 97.2 0.00038 8.3E-09 54.9 3.7 94 64-164 16-110 (322)
448 PF00005 ABC_tran: ABC transpo 97.2 0.00035 7.7E-09 47.8 3.0 23 11-33 13-35 (137)
449 TIGR00235 udk uridine kinase. 97.2 0.00048 1E-08 50.8 3.7 27 6-32 3-29 (207)
450 PRK14530 adenylate kinase; Pro 97.1 0.0005 1.1E-08 51.1 3.3 21 10-30 4-24 (215)
451 COG1126 GlnQ ABC-type polar am 97.1 0.00065 1.4E-08 49.8 3.6 24 150-173 163-186 (240)
452 COG0194 Gmk Guanylate kinase [ 97.1 0.00038 8.1E-09 49.8 2.2 24 10-33 5-28 (191)
453 PRK06217 hypothetical protein; 97.0 0.00056 1.2E-08 49.5 3.1 22 10-31 2-23 (183)
454 PRK10751 molybdopterin-guanine 97.0 0.00075 1.6E-08 48.2 3.7 24 9-32 6-29 (173)
455 KOG1533 Predicted GTPase [Gene 97.0 0.00046 9.9E-09 51.1 2.6 69 58-128 97-177 (290)
456 PF13238 AAA_18: AAA domain; P 97.0 0.00051 1.1E-08 46.2 2.7 21 12-32 1-21 (129)
457 KOG3929 Uncharacterized conser 97.0 0.00036 7.7E-09 52.3 2.0 148 6-156 42-237 (363)
458 PRK03839 putative kinase; Prov 97.0 0.00055 1.2E-08 49.3 3.0 20 11-30 2-21 (180)
459 COG0541 Ffh Signal recognition 97.0 0.00051 1.1E-08 55.3 3.0 62 58-125 183-250 (451)
460 cd01131 PilT Pilus retraction 97.0 0.0026 5.5E-08 46.7 6.5 22 12-33 4-25 (198)
461 smart00382 AAA ATPases associa 97.0 0.00064 1.4E-08 46.1 3.1 26 10-35 3-28 (148)
462 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.00057 1.2E-08 51.6 2.9 22 11-32 32-53 (254)
463 PF05621 TniB: Bacterial TniB 97.0 0.0041 8.9E-08 48.1 7.3 101 10-124 62-190 (302)
464 KOG2423 Nucleolar GTPase [Gene 97.0 0.00033 7.2E-09 55.6 1.4 60 4-67 302-361 (572)
465 PF04665 Pox_A32: Poxvirus A32 97.0 0.00076 1.6E-08 50.7 3.2 25 8-32 12-36 (241)
466 PRK08233 hypothetical protein; 97.0 0.00085 1.8E-08 48.2 3.4 25 8-32 2-26 (182)
467 PRK01889 GTPase RsgA; Reviewed 97.0 0.00082 1.8E-08 53.8 3.6 25 10-34 196-220 (356)
468 cd00071 GMPK Guanosine monopho 97.0 0.00072 1.6E-08 46.5 2.9 21 12-32 2-22 (137)
469 PRK14531 adenylate kinase; Pro 97.0 0.00076 1.6E-08 48.8 3.1 22 9-30 2-23 (183)
470 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00076 1.6E-08 44.1 2.8 21 10-30 16-36 (107)
471 PRK14738 gmk guanylate kinase; 97.0 0.0014 3E-08 48.4 4.5 23 10-32 14-36 (206)
472 TIGR02322 phosphon_PhnN phosph 97.0 0.00069 1.5E-08 48.7 2.9 22 11-32 3-24 (179)
473 PRK14532 adenylate kinase; Pro 96.9 0.00073 1.6E-08 49.0 3.0 21 10-30 1-21 (188)
474 PRK10078 ribose 1,5-bisphospho 96.9 0.00072 1.6E-08 49.0 2.9 22 11-32 4-25 (186)
475 cd03238 ABC_UvrA The excision 96.9 0.00082 1.8E-08 48.3 3.1 21 10-30 22-42 (176)
476 PRK14737 gmk guanylate kinase; 96.9 0.0011 2.3E-08 48.2 3.7 24 10-33 5-28 (186)
477 PRK05541 adenylylsulfate kinas 96.9 0.0011 2.4E-08 47.5 3.8 30 1-32 1-30 (176)
478 COG1120 FepC ABC-type cobalami 96.9 0.00075 1.6E-08 51.2 2.9 22 11-32 30-51 (258)
479 PTZ00088 adenylate kinase 1; P 96.9 0.001 2.2E-08 49.8 3.6 22 9-30 6-27 (229)
480 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00074 1.6E-08 48.8 2.8 21 10-30 4-24 (188)
481 PF00004 AAA: ATPase family as 96.9 0.00087 1.9E-08 45.3 3.0 21 12-32 1-21 (132)
482 TIGR03263 guanyl_kin guanylate 96.9 0.00082 1.8E-08 48.3 3.0 22 11-32 3-24 (180)
483 PRK05480 uridine/cytidine kina 96.9 0.001 2.2E-08 49.2 3.5 26 7-32 4-29 (209)
484 cd01130 VirB11-like_ATPase Typ 96.9 0.00087 1.9E-08 48.6 3.1 24 10-33 26-49 (186)
485 COG1116 TauB ABC-type nitrate/ 96.9 0.0012 2.5E-08 49.5 3.6 22 12-33 32-53 (248)
486 PF03215 Rad17: Rad17 cell cyc 96.9 0.012 2.6E-07 49.5 9.6 19 12-30 48-66 (519)
487 PRK02496 adk adenylate kinase; 96.8 0.0011 2.3E-08 48.0 3.1 21 10-30 2-22 (184)
488 KOG3347 Predicted nucleotide k 96.8 0.00087 1.9E-08 46.2 2.4 24 7-30 5-28 (176)
489 PRK13949 shikimate kinase; Pro 96.8 0.0011 2.4E-08 47.3 3.0 20 11-30 3-22 (169)
490 COG3840 ThiQ ABC-type thiamine 96.8 0.0011 2.4E-08 47.4 2.9 23 10-32 26-48 (231)
491 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0053 1.1E-07 41.9 6.1 24 10-33 23-46 (133)
492 PRK04195 replication factor C 96.8 0.02 4.4E-07 47.9 10.8 23 10-32 40-62 (482)
493 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0015 3.3E-08 48.5 3.7 23 11-33 32-54 (218)
494 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0014 3.1E-08 48.3 3.6 23 11-33 29-51 (211)
495 COG0396 sufC Cysteine desulfur 96.8 0.0022 4.7E-08 47.5 4.4 21 13-33 34-54 (251)
496 TIGR01166 cbiO cobalt transpor 96.8 0.0015 3.2E-08 47.5 3.6 23 11-33 20-42 (190)
497 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0016 3.5E-08 47.9 3.8 23 11-33 28-50 (205)
498 cd03261 ABC_Org_Solvent_Resist 96.8 0.0015 3.2E-08 49.2 3.6 23 11-33 28-50 (235)
499 PRK13900 type IV secretion sys 96.8 0.0059 1.3E-07 48.4 7.1 26 9-34 160-185 (332)
500 cd01428 ADK Adenylate kinase ( 96.8 0.0011 2.3E-08 48.2 2.8 21 11-31 1-21 (194)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-43 Score=243.91 Aligned_cols=198 Identities=38% Similarity=0.647 Sum_probs=174.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...+||+++|+.|+|||+|+.||..+.|.+.+..+.++++..+++.+++..++++||||+|+++|++....|+++||++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~ 165 (207)
+|||+++.+||+.+..|+.++++....++|.++|+||.|+.+.+.+..++++.++..++++ ++++||+++.+++++|..
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHcCCCccCcccccccccccccCCCCCCccCCCCCCCccC
Q 028546 166 IAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 207 (207)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (207)
|...+............ ........++.+.....++|||
T Consensus 167 la~~lk~~~~~~~~~~~---~~~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 167 LAKELKQRKGLHVKWST---ASLESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHhcccCCCCCc---CCCCceeeCCCCcccccCCCCC
Confidence 99988766555444442 1122222222234445555775
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-42 Score=239.97 Aligned_cols=202 Identities=78% Similarity=1.160 Sum_probs=181.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
...+.+|++++|..++||||||.+|..+.|...+.++.++++...++.+.+..+++++|||+|+++|+++.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCC-CCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
+|+|||+++..+|+...+|+..++...+. ++.+++|+||.||.+.+++..++.+..+++++..|+++|++.|.||+++|
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999999999999999999988875 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCccCccccc-ccccccccCCCCCCccCCCCCCCccC
Q 028546 164 RKIAAALPGMETLSSTKQ-EDMVDVNLKPTVNSSQTEQQGGGCAC 207 (207)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (207)
..|..++.+++..+...+ ++...++.+++.+..+ .++++.|||
T Consensus 178 rrIaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~-~s~~~~~~C 221 (221)
T KOG0094|consen 178 RRIAAALPGMEVLEILSKQESMVDINLKGSPNEQQ-ASKPGLCSC 221 (221)
T ss_pred HHHHHhccCccccccccccccceeEEccCCCCccc-ccCCCCCCC
Confidence 999999999987663433 3355556665543333 333777998
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-40 Score=230.10 Aligned_cols=198 Identities=38% Similarity=0.730 Sum_probs=176.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
..++|++++|..++|||||+-||..++|.+...++.+-.+...++.+++..+++.||||+|+++|.++-+.|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35699999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||+++.+||..++.|++.+.....+++.+.||+||+|+.+.+++..+++..+++..+..++++|+++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccCcccccccccccccCCCCCCccCCCCCCCccC
Q 028546 167 AAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 207 (207)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (207)
.+.+.............. +..-...+.+.++++++|||
T Consensus 163 a~~lp~~~~~~~~~~~~~---~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLPNR---RQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HHhccCcccccccccccc---ccceecccCCCCcCcCCcCC
Confidence 999998877766521110 12222222225677888887
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-39 Score=227.06 Aligned_cols=169 Identities=44% Similarity=0.765 Sum_probs=163.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+....+||+++|.+++|||+|+.+|..+.|...+..+.++++..+++.+++..+.+.+|||+|+++++.+...|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
+++|||+++..+|+.+..|+..+.++....+|.++|+||+|+.+.+++..+..++++..+|+.++++||++|.||++.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028546 165 KIAAALPGM 173 (207)
Q Consensus 165 ~l~~~~~~~ 173 (207)
.|++.+...
T Consensus 168 ~La~~i~~k 176 (207)
T KOG0078|consen 168 SLARDILQK 176 (207)
T ss_pred HHHHHHHhh
Confidence 999998853
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.9e-38 Score=212.61 Aligned_cols=171 Identities=37% Similarity=0.654 Sum_probs=160.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...+||+++|..|+|||+|+-+|+.+.|.+....+.+.++..+.+.+++..+++.+|||+|+++|+++++.|+++|.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 34599999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
+|||++.+++|..+.-|++.+..+.. +++..++|+||+|....+.+..++...+++++++.|+++||++.++++..|+.
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence 99999999999999999999987764 66778999999998888999999999999999999999999999999999999
Q ss_pred HHHHcCCCccCc
Q 028546 166 IAAALPGMETLS 177 (207)
Q Consensus 166 l~~~~~~~~~~~ 177 (207)
|+.++.+.+..-
T Consensus 169 lveKIi~tp~l~ 180 (209)
T KOG0080|consen 169 LVEKIIETPSLW 180 (209)
T ss_pred HHHHHhcCcchh
Confidence 999998665443
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.5e-37 Score=225.67 Aligned_cols=198 Identities=31% Similarity=0.583 Sum_probs=163.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
++|+++|..|+|||||+.+|..+.|...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888888888888888899998899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCChHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
|++++++|+.+..|+..+......+.|+++|+||+|+.+.+++...+...+++.+ ++.++++||++|.|++++|++|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999888776678999999999999888888888888888775 789999999999999999999999
Q ss_pred HcCCCccCcc-cccccccccccCCC--CCCccCCCCCCCccC
Q 028546 169 ALPGMETLSS-TKQEDMVDVNLKPT--VNSSQTEQQGGGCAC 207 (207)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 207 (207)
.+........ +.....+....+|. .-.---+|.+-.=||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (202)
T cd04120 161 DILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC 202 (202)
T ss_pred HHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCcccC
Confidence 8764322222 22222222233333 333334556655555
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=215.50 Aligned_cols=169 Identities=38% Similarity=0.700 Sum_probs=161.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
.....+|++++|+.|+|||+|+.+|....|.+.+..+.++++-.+.+.++++.+++++|||+|++.|++....|++++-+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
+|||||+++.++|..+..|+..++.+...+..++|++||+|+...+++..++.+.+++++++.++++|++++.+++|.|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028546 165 KIAAALPGM 173 (207)
Q Consensus 165 ~l~~~~~~~ 173 (207)
.....+...
T Consensus 162 nta~~Iy~~ 170 (216)
T KOG0098|consen 162 NTAKEIYRK 170 (216)
T ss_pred HHHHHHHHH
Confidence 988877543
No 8
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-36 Score=223.32 Aligned_cols=195 Identities=33% Similarity=0.542 Sum_probs=159.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
+||+++|++|+|||||+++|+++.+...+.++.+.++....+.++ +..+.+.+||+||++++..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888888888877778887 7788999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCChHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTER----GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~ 163 (207)
||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+....+++..+++..+ ..++++|+++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886542 2578999999999997667788888899999988 689999999999999999
Q ss_pred HHHHHHcCCCccCcccccccccccccCCCCCCccCCCCCCCcc
Q 028546 164 RKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCA 206 (207)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
++|.+.+............ ........-.+..++.++++||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAET--PEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcC--CCcccccccccceeccccCCCC
Confidence 9999988654322222221 1112222223344556666676
No 9
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.8e-38 Score=209.39 Aligned_cols=186 Identities=39% Similarity=0.648 Sum_probs=169.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
+-++.+|+|++|+|||+|+.+|-.+.|..+|..+.+.++..+++.+++..+++.|||++|+++|+.+...|+++.+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|||+++.++|.+..+|++.++..++ .+|-++|+||.|..+.+.+..++++.++..+++.+|++|+++++|++..|..|.
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 9999999999999999999998887 689999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCccCcccccccccccccCCCCC
Q 028546 168 AALPGMETLSSTKQEDMVDVNLKPTVN 194 (207)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (207)
+.+....-.....+........+++.+
T Consensus 166 ~qvl~~k~r~~~~~~r~~~~~l~~n~~ 192 (198)
T KOG0079|consen 166 KQVLQAKLRESVEQQRADAVSLKDNSK 192 (198)
T ss_pred HHHHHHHHhhcHHHHhhcceEeccCCC
Confidence 988766534444444455556666553
No 10
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.9e-36 Score=221.85 Aligned_cols=166 Identities=38% Similarity=0.720 Sum_probs=153.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|+.++..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 55999999999999999999999999987778888888888888899988999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|++|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887766899999999999987778888888888888899999999999999999999999
Q ss_pred HHcCCC
Q 028546 168 AALPGM 173 (207)
Q Consensus 168 ~~~~~~ 173 (207)
..+...
T Consensus 171 ~~i~~~ 176 (216)
T PLN03110 171 LEIYHI 176 (216)
T ss_pred HHHHHH
Confidence 988654
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.9e-36 Score=217.67 Aligned_cols=167 Identities=36% Similarity=0.598 Sum_probs=153.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+++|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++||
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999999987777888888877888889988999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|||++++.+|+.+..|+..+.... .+.|++||+||.|+.+.+.+..++++.+++.+++++++|||++|.|++++|++|.
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999997765 4799999999999988888889999999999999999999999999999999999
Q ss_pred HHcCCCcc
Q 028546 168 AALPGMET 175 (207)
Q Consensus 168 ~~~~~~~~ 175 (207)
+.+.....
T Consensus 164 ~~i~~~~~ 171 (189)
T cd04121 164 RIVLMRHG 171 (189)
T ss_pred HHHHHhcC
Confidence 98865444
No 12
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-36 Score=212.81 Aligned_cols=170 Identities=36% Similarity=0.709 Sum_probs=162.3
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (207)
.+....+||+++|++++|||-|+.+|..+.|.....++.+.++..+++.++++.++.+||||+|+++|+.....|++++.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 34456699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
++++|||++...+|+.+.+|+.+++.+.+.++++++|+||+||...+.+..++...++...+..++++||+++.|++++|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 028546 164 RKIAAALPGM 173 (207)
Q Consensus 164 ~~l~~~~~~~ 173 (207)
..++..+...
T Consensus 169 ~~~l~~I~~~ 178 (222)
T KOG0087|consen 169 ERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHH
Confidence 9999887644
No 13
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.1e-35 Score=218.29 Aligned_cols=195 Identities=35% Similarity=0.622 Sum_probs=161.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46999999999999999999999999987778888888877888888888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|||++++++|+.+..|+..+..... ..|++||+||+|+.+...+...+...++..++.+++++|+++|.|++++|++|.
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999999876553 689999999999987777777888888888899999999999999999999999
Q ss_pred HHcCCCccCcccccccccccccCCCCCCccCCCCCCCcc
Q 028546 168 AALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCA 206 (207)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
+.+.........+.....++-..... ...+++++||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 199 (199)
T cd04110 164 ELVLRAKKDNLAKQQQQQQNDVVKLP---KNSKRKKRCC 199 (199)
T ss_pred HHHHHhhhccCcccccCCccccCccc---hhccccccCC
Confidence 99876544443333222222222111 1336667776
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.5e-36 Score=207.63 Aligned_cols=176 Identities=40% Similarity=0.622 Sum_probs=160.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (207)
|++......+||+++|++|+|||+|+++|+..+|...+..+.+.++..+.+.+++..+.+++|||+|+++|.++--.+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 55555566799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCC--CCCCCHHHHHHHHHHh-CCeEEEEec
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVD--KRQVSIEEGDGKAKEF-GVMFIETSA 153 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~s~ 153 (207)
++|..++|||++++.+|+.+..|..++..... ..-|+||++||+|+.+ .+.++...+..++... ++++|++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999877654 5678999999999854 2788888888888876 579999999
Q ss_pred CCCCChHHHHHHHHHHcCCCccC
Q 028546 154 KAGFNIKPLFRKIAAALPGMETL 176 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~~~~~ 176 (207)
++..||+++|..+.+.+...+..
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred cccccHHHHHHHHHHHHHhccch
Confidence 99999999999999999887764
No 15
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.6e-35 Score=214.35 Aligned_cols=190 Identities=38% Similarity=0.667 Sum_probs=160.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
+||+++|++|+|||||+++|.++.+.. .+.++.+.++....+.+++..+.+.|||+||++++...+..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998864 5567777777777788888889999999999999999889999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
||+++.++++.+..|+..+.......+|+++|+||+|+...+.+...+...++..++++++++|+++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876667999999999999777777777888888888999999999999999999999999
Q ss_pred HcCCCccCcccccccccccccCCCCCCccCCCCCCCcc
Q 028546 169 ALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCA 206 (207)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
.+.+.....+...... ....++...|.++||
T Consensus 161 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQPDEGKFK-------ISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHhccccCCCCcEE-------eccccCcccccCCCC
Confidence 9876654443333222 223344667777887
No 16
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.9e-35 Score=215.66 Aligned_cols=199 Identities=35% Similarity=0.620 Sum_probs=163.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE-CCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
.+||+|+|++|+|||||+++|+++.+...+.++.+.++..+.+.+ ++..+.+.+||++|++.+...+..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998877888888888777776 4566899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
|||++++++|+.+..|+..+..... ...|++||+||.|+.+...+..++...+++.++++++++|+++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999876643 457889999999998877888888889999999999999999999999999999
Q ss_pred HHHcCCCccCcc---------cccccccccccCCCCCCccCCCCCCCccC
Q 028546 167 AAALPGMETLSS---------TKQEDMVDVNLKPTVNSSQTEQQGGGCAC 207 (207)
Q Consensus 167 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (207)
.+.+.+.....+ -+.......-.+..-.+.+..+-.+.|||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 162 TQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred HHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence 997764422221 11112222233344445556666777887
No 17
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=212.93 Aligned_cols=167 Identities=38% Similarity=0.708 Sum_probs=151.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 44579999999999999999999999998877788888888778888888888999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|+|||++++.+++.+..|+..+........|+++|+||.|+.+.+.+..++...+++.++++++++|++++.|++++|.+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887766667999999999999877778888888999999999999999999999999999
Q ss_pred HHHHcCC
Q 028546 166 IAAALPG 172 (207)
Q Consensus 166 l~~~~~~ 172 (207)
+.+.+..
T Consensus 163 l~~~~~~ 169 (210)
T PLN03108 163 TAAKIYK 169 (210)
T ss_pred HHHHHHH
Confidence 9987753
No 18
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=6.2e-35 Score=212.94 Aligned_cols=163 Identities=36% Similarity=0.593 Sum_probs=142.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988777777766443 4456678888899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 91 VANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
+++..+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+.......++..++++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 4689999999999987777777777888888899999999999999999999999
Q ss_pred HHcCCCc
Q 028546 168 AALPGME 174 (207)
Q Consensus 168 ~~~~~~~ 174 (207)
+.+....
T Consensus 160 ~~l~~~~ 166 (190)
T cd04144 160 RALRQQR 166 (190)
T ss_pred HHHHHhh
Confidence 9876433
No 19
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.9e-34 Score=210.13 Aligned_cols=163 Identities=40% Similarity=0.686 Sum_probs=149.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|.+.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998777888888887788888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
|+++++++..+..|+..+........|+++|+||.|+.+...+.......++...+++++++|+++|.|++++|.+|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998777788888888888888999999999999999999999999
Q ss_pred cCC
Q 028546 170 LPG 172 (207)
Q Consensus 170 ~~~ 172 (207)
+..
T Consensus 161 ~~~ 163 (188)
T cd04125 161 IIK 163 (188)
T ss_pred HHH
Confidence 864
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2e-34 Score=205.99 Aligned_cols=163 Identities=36% Similarity=0.674 Sum_probs=149.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999887777877787777788888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|.++.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776667899999999999888888888889999989999999999999999999999998
Q ss_pred HcC
Q 028546 169 ALP 171 (207)
Q Consensus 169 ~~~ 171 (207)
.+.
T Consensus 162 ~~~ 164 (166)
T cd04122 162 KIY 164 (166)
T ss_pred HHh
Confidence 764
No 21
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.4e-34 Score=213.59 Aligned_cols=164 Identities=40% Similarity=0.610 Sum_probs=148.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||++|++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889999888888888765 468999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
||++++++|+.+..|+..+..... .++|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999887643 35689999999999877788888888899989999999999999999999999
Q ss_pred HHHHcCCC
Q 028546 166 IAAALPGM 173 (207)
Q Consensus 166 l~~~~~~~ 173 (207)
|...+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988654
No 22
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.4e-34 Score=214.16 Aligned_cols=165 Identities=33% Similarity=0.546 Sum_probs=139.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|.+|+|||||+++|+.+.+.. ..++.+.++..... ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 35555554433322 4578999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHhC-----
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD-------------------KRQVSIEEGDGKAKEFG----- 145 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 145 (207)
|++++++|+.+..|+..+......++|+++|+||+|+.+ .+.+..+++..+++.++
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888888766566799999999999975 56778889999998876
Q ss_pred ---------CeEEEEecCCCCChHHHHHHHHHHcCCCccCccc
Q 028546 146 ---------VMFIETSAKAGFNIKPLFRKIAAALPGMETLSST 179 (207)
Q Consensus 146 ---------~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~~~ 179 (207)
+++++|||++|.||+++|..+++.+....-..+.
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~ 198 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA 198 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999999988755444333
No 23
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.7e-34 Score=203.08 Aligned_cols=160 Identities=38% Similarity=0.687 Sum_probs=148.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
|++++++|+.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|.+|+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999987766679999999999998888888888898998899999999999999999999999875
No 24
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.2e-34 Score=210.96 Aligned_cols=168 Identities=27% Similarity=0.469 Sum_probs=148.5
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (207)
++.....+||+++|+.|+|||+|+.+|..+.|...+.++.+..+ ...+.+++..+.+.||||+|+++|..+...+++++
T Consensus 7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a 85 (232)
T cd04174 7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 85 (232)
T ss_pred CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence 34556789999999999999999999999999988888887655 34577889999999999999999999999999999
Q ss_pred CEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eE
Q 028546 83 SVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFGV-MF 148 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~ 148 (207)
|++|+|||++++.+|+. +..|+..+..... +.|++||+||+|+.+ .+.+..++++.++..+++ .|
T Consensus 86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 86 DAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 99999999999999998 5899999987654 689999999999864 256888999999999998 69
Q ss_pred EEEecCCCC-ChHHHHHHHHHHcCC
Q 028546 149 IETSAKAGF-NIKPLFRKIAAALPG 172 (207)
Q Consensus 149 ~~~s~~~~~-~i~~~~~~l~~~~~~ 172 (207)
++|||++|. |++++|..++..+..
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHH
Confidence 999999998 899999999988654
No 25
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=8.3e-34 Score=202.59 Aligned_cols=162 Identities=39% Similarity=0.728 Sum_probs=147.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998887888887777777777888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
|++++++++.+..|+..+........|+++|+||+|+.+.+....+....++..++++++++|+++|.|++++|++|.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998777777778888888889999999999999999999999987
Q ss_pred cC
Q 028546 170 LP 171 (207)
Q Consensus 170 ~~ 171 (207)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 26
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=8.4e-34 Score=202.93 Aligned_cols=165 Identities=41% Similarity=0.758 Sum_probs=150.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999999988888888888877888888888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+..+.....+..++++++++|+++|.|++++|.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999876666799999999999987777777788888888899999999999999999999999
Q ss_pred HHcCC
Q 028546 168 AALPG 172 (207)
Q Consensus 168 ~~~~~ 172 (207)
+++..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 98753
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=6.4e-34 Score=205.60 Aligned_cols=163 Identities=28% Similarity=0.507 Sum_probs=145.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
...++||+++|++|+|||||+.+|..+.|...+.++.+..+ ...+.+++..+.+.+|||+|+++|..+...+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 34679999999999999999999999999888888887544 45677889889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEE
Q 028546 86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFGV-MFIET 151 (207)
Q Consensus 86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 151 (207)
|+|||++++.+|+.+ ..|+..+....+ +.|++||+||.|+.+ .+.+..++++.+++.+++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 799999987654 689999999999854 245888999999999996 99999
Q ss_pred ecCCCCC-hHHHHHHHHHHc
Q 028546 152 SAKAGFN-IKPLFRKIAAAL 170 (207)
Q Consensus 152 s~~~~~~-i~~~~~~l~~~~ 170 (207)
||++|.| ++++|..++..+
T Consensus 160 SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 160 SALQSENSVRDIFHVATLAC 179 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHH
Confidence 9999998 999999998864
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=8e-34 Score=203.95 Aligned_cols=160 Identities=36% Similarity=0.592 Sum_probs=143.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|.+|+|||+|+.+|..+.|...+.++.+..+ ...+.+++..+++.+|||+|++++..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888887554 455678888899999999999999999999999999999999
Q ss_pred ECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCC----------CCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546 90 DVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKR----------QVSIEEGDGKAKEFGV-MFIETSAKAGF 157 (207)
Q Consensus 90 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (207)
|++++.+|+.+ ..|+..+..... +.|++||+||.|+.+.+ .+..++...+++.+++ .+++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689999876654 69999999999996543 4778889999999998 69999999999
Q ss_pred ChHHHHHHHHHHcC
Q 028546 158 NIKPLFRKIAAALP 171 (207)
Q Consensus 158 ~i~~~~~~l~~~~~ 171 (207)
||+++|+.+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 29
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-34 Score=193.55 Aligned_cols=170 Identities=37% Similarity=0.631 Sum_probs=159.8
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (207)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (207)
.+.....-+|++++|+.|+|||+|+++|+.++|......+.++++..+.+.+.++.+++++|||+|+++|++..+.|+++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 34444556999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (207)
+-+.++|||+++.++|+.+..|+..++.....++-+++++||.|+..++++...++..++.+..+-+.++|+++|+|++|
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 028546 162 LFRKIAAALP 171 (207)
Q Consensus 162 ~~~~l~~~~~ 171 (207)
.|-...+.+.
T Consensus 162 aFl~c~~tIl 171 (214)
T KOG0086|consen 162 AFLKCARTIL 171 (214)
T ss_pred HHHHHHHHHH
Confidence 9988877764
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=9.9e-34 Score=203.39 Aligned_cols=163 Identities=33% Similarity=0.535 Sum_probs=145.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
.+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||+.++..++..+++++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 58999999999999999999999999877777776444 44567788888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
||++++.+|+.+..|+..+.... ..++|+++|+||.|+.+.+.+..++...+++.+++++++|||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999888876643 35799999999999987778888888889998999999999999999999999999
Q ss_pred HHcCC
Q 028546 168 AALPG 172 (207)
Q Consensus 168 ~~~~~ 172 (207)
..+..
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 87764
No 31
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-34 Score=193.29 Aligned_cols=168 Identities=38% Similarity=0.700 Sum_probs=159.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
.+|++++|...+|||+|+.++.+..|.....++.++++..+++....+.+++++|||+|+++|+.....++++++++|+|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 47999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
||+++.++|..++.|...+....-.+.|+|+++||+|+.+++-+..+..+.+++++|+++|++|++.+.|++++|+.|..
T Consensus 101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 99999999999999999998887789999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCccC
Q 028546 169 ALPGMETL 176 (207)
Q Consensus 169 ~~~~~~~~ 176 (207)
.+-+....
T Consensus 181 ~Ic~kmse 188 (193)
T KOG0093|consen 181 IICDKMSE 188 (193)
T ss_pred HHHHHhhh
Confidence 88655433
No 32
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1e-33 Score=206.39 Aligned_cols=165 Identities=34% Similarity=0.567 Sum_probs=145.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+.++||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4469999999999999999999999998877777766444 566778888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
+|||++++++|+.+..|+..+..... .+.|+++|+||.|+.+.+.+...+...++..++.+++++||++|.|++++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998876543 47899999999998776777777777788888899999999999999999999
Q ss_pred HHHHcCC
Q 028546 166 IAAALPG 172 (207)
Q Consensus 166 l~~~~~~ 172 (207)
|++.+..
T Consensus 162 l~~~l~~ 168 (189)
T PTZ00369 162 LVREIRK 168 (189)
T ss_pred HHHHHHH
Confidence 9988753
No 33
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.5e-33 Score=204.56 Aligned_cols=162 Identities=31% Similarity=0.499 Sum_probs=141.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+++|+.|+|||||+.+|..+.|...+.++.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 468999999999999999999999999888888877544 4456678888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEEec
Q 028546 88 VYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFG-VMFIETSA 153 (207)
Q Consensus 88 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~ 153 (207)
|||++++.+|+.+. .|+..+.... .++|++||+||.|+.+.. .+..++...+++.++ ++++++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999996 5888776554 479999999999996542 355677888888888 58999999
Q ss_pred CCCCChHHHHHHHHHHcC
Q 028546 154 KAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~ 171 (207)
++|.|++++|.+|++.+.
T Consensus 160 k~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
No 34
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3e-33 Score=199.82 Aligned_cols=162 Identities=31% Similarity=0.606 Sum_probs=147.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899988888888888888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC-----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERG-----GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
|++++.+++.+..|+..+..... .+.|+++|+||.|+.+......+....++...+++++++|+++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877654 4689999999999976667777777778888889999999999999999999
Q ss_pred HHHHHcC
Q 028546 165 KIAAALP 171 (207)
Q Consensus 165 ~l~~~~~ 171 (207)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998764
No 35
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.2e-33 Score=199.69 Aligned_cols=163 Identities=42% Similarity=0.751 Sum_probs=149.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999999887788888888888888888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
||+++++++..+..|+..+......+.|+++|+||.|+.+...+..++...++..++++++++|+++|.|++++|.+|.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998766567899999999999877778888888888889999999999999999999999998
Q ss_pred HcC
Q 028546 169 ALP 171 (207)
Q Consensus 169 ~~~ 171 (207)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 764
No 36
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.1e-33 Score=203.24 Aligned_cols=164 Identities=24% Similarity=0.508 Sum_probs=143.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|..|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899988888888889998899999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-----CCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK-----RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
|++++.+++.+..|+..+........| ++|+||+|+..+ .+...++...++..++++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876555566 678999998531 12224556677888889999999999999999999
Q ss_pred HHHHHcCCCc
Q 028546 165 KIAAALPGME 174 (207)
Q Consensus 165 ~l~~~~~~~~ 174 (207)
++.+.+.+..
T Consensus 160 ~l~~~l~~~~ 169 (182)
T cd04128 160 IVLAKAFDLP 169 (182)
T ss_pred HHHHHHHhcC
Confidence 9999886543
No 37
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-34 Score=192.95 Aligned_cols=163 Identities=39% Similarity=0.684 Sum_probs=155.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
-+||+++|..|+|||+|+.+|..+-|++.-..+.+.++-.+++.+++..+++.+|||+|+++|++....|++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 48999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
||++...+|+.+-+|+..+..+.+.++.-++|+||+|+.+.+++.....+.+.+..+.-++++|+++.++++.+|..++.
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999988888999999999999999999987
Q ss_pred HcC
Q 028546 169 ALP 171 (207)
Q Consensus 169 ~~~ 171 (207)
.+-
T Consensus 167 rli 169 (213)
T KOG0095|consen 167 RLI 169 (213)
T ss_pred HHH
Confidence 664
No 38
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.2e-33 Score=201.51 Aligned_cols=161 Identities=27% Similarity=0.516 Sum_probs=142.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++||+++|++|+|||||+++|.++.++..+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999888888876554 45677888889999999999999999999999999999999
Q ss_pred EECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecC
Q 028546 89 YDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFGV-MFIETSAK 154 (207)
Q Consensus 89 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (207)
||++++.+|+.+ ..|+..+....+ +.|+++|+||.|+.+ .+.+..+++..+++.+++ .+++|||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999995 799999987654 689999999999854 245788899999999997 89999999
Q ss_pred CCCC-hHHHHHHHHHHcC
Q 028546 155 AGFN-IKPLFRKIAAALP 171 (207)
Q Consensus 155 ~~~~-i~~~~~~l~~~~~ 171 (207)
+|.+ ++++|..++....
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998543
No 39
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=7.8e-33 Score=197.48 Aligned_cols=162 Identities=38% Similarity=0.772 Sum_probs=148.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
.+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++++++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999998877788888888888888888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
||++++.+++.+..|+..+......++|+++|+||.|+...+++..++...++...+++++++|+++|.|++++|++|.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998877667999999999999877777788888888888899999999999999999999988
Q ss_pred Hc
Q 028546 169 AL 170 (207)
Q Consensus 169 ~~ 170 (207)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 65
No 40
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.8e-33 Score=197.84 Aligned_cols=162 Identities=41% Similarity=0.712 Sum_probs=146.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999999988878888888877888888888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l 166 (207)
|||++++.+++.+..|+..+......++|+++|+||+|+.+.++........+++..+. .++++|+++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876666799999999999987777777888888888876 78999999999999999999
Q ss_pred HHH
Q 028546 167 AAA 169 (207)
Q Consensus 167 ~~~ 169 (207)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3.8e-33 Score=198.54 Aligned_cols=161 Identities=35% Similarity=0.578 Sum_probs=141.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 47999999999999999999999988777666665 44556677888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+....++..++.+++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998876543 5789999999999977667777777778888889999999999999999999998
Q ss_pred HHc
Q 028546 168 AAL 170 (207)
Q Consensus 168 ~~~ 170 (207)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 765
No 42
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=203.98 Aligned_cols=172 Identities=38% Similarity=0.647 Sum_probs=145.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
.....+||+|+|++|+|||||+++|.+..+. ...++.+.+.....+.+++..+.+.+|||||++++..++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3345699999999999999999999988774 446677777777777788888899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHH-HHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHH
Q 028546 85 AVIVYDVANRQSFLNTSR-WIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (207)
+|+|||++++++|+.+.. |...+.... ....|+++|+||+|+.....+..++...++...++.++++|++++.|++++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999876 555554332 245789999999999877777777778888888999999999999999999
Q ss_pred HHHHHHHcCCCccCc
Q 028546 163 FRKIAAALPGMETLS 177 (207)
Q Consensus 163 ~~~l~~~~~~~~~~~ 177 (207)
|++|.+.+.+.....
T Consensus 169 ~~~l~~~~~~~~~~~ 183 (211)
T PLN03118 169 FEELALKIMEVPSLL 183 (211)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999987654433
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4.5e-33 Score=201.46 Aligned_cols=164 Identities=40% Similarity=0.682 Sum_probs=146.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC----------CeEEEEEEEecCChhhhcccccc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS 77 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~ 77 (207)
..+||+++|++|+|||||++++..+.+...+.++.+.++....+.+. +..+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45999999999999999999999999988888888877776666554 35679999999999999999999
Q ss_pred ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546 78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG 156 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (207)
+++++|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999987654 346899999999999887788888888999999999999999999
Q ss_pred CChHHHHHHHHHHcC
Q 028546 157 FNIKPLFRKIAAALP 171 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~ 171 (207)
.|++++|++|.+.+.
T Consensus 163 ~~v~~l~~~l~~~~~ 177 (180)
T cd04127 163 TNVEKAVERLLDLVM 177 (180)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 44
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=5.3e-33 Score=197.73 Aligned_cols=161 Identities=44% Similarity=0.769 Sum_probs=153.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
||+++|++|+|||||+++|.++.++..+.++.+.+.....+..++..+.+.+||++|++++......++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999889998899999999999999999999999999998888899999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546 91 VANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
++++++++.+..|+..+......+.|++|++||.|+.+.+++..++++.+++.++.+++++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988886799999999999988889999999999999999999999999999999999999876
Q ss_pred C
Q 028546 171 P 171 (207)
Q Consensus 171 ~ 171 (207)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 45
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=8.5e-33 Score=196.52 Aligned_cols=161 Identities=41% Similarity=0.743 Sum_probs=147.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998887888888887788888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
|++++.++..+..|+..+......++|+++++||+|+.+...+..++...++...++.++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766789999999999998877788888888899999999999999999999999999875
Q ss_pred c
Q 028546 170 L 170 (207)
Q Consensus 170 ~ 170 (207)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 3
No 46
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1e-32 Score=197.48 Aligned_cols=164 Identities=38% Similarity=0.728 Sum_probs=149.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
.+||+++|.+|+|||||++++.++.+...+.++.+.+.....+..++....+.+||+||++++......+++++|++|+|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999998887778888888888888888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
||++++.+++.+..|+..+......+.|++||+||+|+.+...+..++.+.++...++.++++|++++.|++++|.++.+
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998776667999999999999877777788888888888999999999999999999999998
Q ss_pred HcCC
Q 028546 169 ALPG 172 (207)
Q Consensus 169 ~~~~ 172 (207)
.+.+
T Consensus 164 ~~~~ 167 (168)
T cd01866 164 EIYE 167 (168)
T ss_pred HHHh
Confidence 7653
No 47
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.4e-32 Score=203.58 Aligned_cols=163 Identities=25% Similarity=0.489 Sum_probs=140.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++||+|+|.+|+|||||+.+|..+.|+..+.++....+. ..+.+++..+.+.+|||+|++.|...+..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999999888888875553 5677888899999999999999999999999999999999
Q ss_pred EECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecC
Q 028546 89 YDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETSAK 154 (207)
Q Consensus 89 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (207)
||++++++|+.+ ..|...+.... .+.|++||+||+|+.++ ..+..++...+++.+++ .|++|||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999998 46776665443 47999999999998643 13667788899999996 89999999
Q ss_pred CCCC-hHHHHHHHHHHcCCC
Q 028546 155 AGFN-IKPLFRKIAAALPGM 173 (207)
Q Consensus 155 ~~~~-i~~~~~~l~~~~~~~ 173 (207)
++.+ |+++|..........
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 159 SSERSVRDVFHVATVASLGR 178 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhc
Confidence 9885 999999999976543
No 48
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=2.1e-32 Score=200.16 Aligned_cols=164 Identities=37% Similarity=0.654 Sum_probs=142.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
+||+|+|++|+|||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++++..++..++.++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999874 5667777777777888899889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC----CCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK----RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ..+...++..++..++++++++|+++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887653 36899999999998643 34445666777788889999999999999999999
Q ss_pred HHHHHcCCCc
Q 028546 165 KIAAALPGME 174 (207)
Q Consensus 165 ~l~~~~~~~~ 174 (207)
+|.+.+....
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999886443
No 49
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.4e-34 Score=192.17 Aligned_cols=164 Identities=40% Similarity=0.729 Sum_probs=151.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE-CCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
.++++|+|+.-+|||+|+..|..+++.+-++|+.+.+++.+.+.. .+..+++++|||+|+++|++.+..|++++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 589999999999999999999999999999999999999888766 4567899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|||+++.++|+.+..|+........ .++.+++|++|.|+...+++..+++++++..+++.++++|+++|.|+++.|+.
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence 9999999999999999998766654 44557899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q 028546 166 IAAALPG 172 (207)
Q Consensus 166 l~~~~~~ 172 (207)
|.+.+..
T Consensus 168 laqeIf~ 174 (213)
T KOG0091|consen 168 LAQEIFQ 174 (213)
T ss_pred HHHHHHH
Confidence 9997653
No 50
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8.2e-33 Score=201.31 Aligned_cols=166 Identities=31% Similarity=0.469 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
+||+|+|++|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||||++++...+..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999987777777665543 34444 6678999999999999999999999999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC----CCCHHHHHHHHHHhCC-eEEEEecCCCCChHHH
Q 028546 89 YDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR----QVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPL 162 (207)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 162 (207)
||++++.+|+.+. .|+..+.... .+.|+++|+||.|+.+.. .+...+...++..+++ +++++|+++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 5887776543 468999999999986532 4567778888888888 9999999999999999
Q ss_pred HHHHHHHcCCCccCc
Q 028546 163 FRKIAAALPGMETLS 177 (207)
Q Consensus 163 ~~~l~~~~~~~~~~~ 177 (207)
|..+.+.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999988655544
No 51
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.3e-32 Score=195.72 Aligned_cols=159 Identities=40% Similarity=0.724 Sum_probs=143.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC--CeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+. +..+++.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999987778888888777777776 677899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|||++++++++.+..|+..+..... ++|+++|+||.|+.....+..++...+++.++++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999876554 699999999999987777888888888999999999999999999999999998
Q ss_pred HH
Q 028546 168 AA 169 (207)
Q Consensus 168 ~~ 169 (207)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 52
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.1e-32 Score=196.62 Aligned_cols=162 Identities=33% Similarity=0.576 Sum_probs=142.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998888766666665443 45677888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+...+.......+++.++++++++||++|.|++++|.+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887653 35799999999999987777777777778888889999999999999999999999
Q ss_pred HHcC
Q 028546 168 AALP 171 (207)
Q Consensus 168 ~~~~ 171 (207)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 53
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.2e-32 Score=194.33 Aligned_cols=161 Identities=84% Similarity=1.224 Sum_probs=147.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++++|||||++++++..+...+.++.+.++....+.+++..+++.+||+||+..+..++..+++++|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888889998988888888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
|++++++|+.+..|+..+....+.+.|+++++||+|+.+......+.....+...+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999887766679999999999997777777777888888888999999999999999999999875
Q ss_pred c
Q 028546 170 L 170 (207)
Q Consensus 170 ~ 170 (207)
+
T Consensus 161 l 161 (161)
T cd01861 161 L 161 (161)
T ss_pred C
Confidence 3
No 54
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.5e-32 Score=194.46 Aligned_cols=163 Identities=47% Similarity=0.816 Sum_probs=148.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+......+++++|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988787888888888888888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
|++++.+++.+..|+..+.......+|+++++||+|+....+...+.+..++..++++++++|+.+|.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887765679999999999987767777788888888889999999999999999999999988
Q ss_pred cCC
Q 028546 170 LPG 172 (207)
Q Consensus 170 ~~~ 172 (207)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 55
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.9e-32 Score=197.19 Aligned_cols=160 Identities=29% Similarity=0.491 Sum_probs=138.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
.+||+++|.+|+|||||+++|..+.|...+.++.+..+. ..+.+++..+.+.+||++|++++...+..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998788888775553 4567788889999999999999999999999999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEEecC
Q 028546 89 YDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFG-VMFIETSAK 154 (207)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~ 154 (207)
||++++++|+.+. .|+..+.... .++|++||+||.|+.+. +.+..+++..+++..+ +.++++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999986 5888887654 46899999999998643 4566777788888887 689999999
Q ss_pred CCCChHHHHHHHHHHc
Q 028546 155 AGFNIKPLFRKIAAAL 170 (207)
Q Consensus 155 ~~~~i~~~~~~l~~~~ 170 (207)
+|.|++++|+.++...
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.4e-32 Score=195.88 Aligned_cols=163 Identities=37% Similarity=0.616 Sum_probs=143.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
||+++|.+|+|||||+++|.++.|...+.++.+.++....+.+++..+.+.+||+||++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998888998888888888888888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 91 VANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQ--VSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
++++++++.+..|+..+... .....|+++|+||+|+.+... ........++..++.+++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999987654 344678999999999865433 234556677777889999999999999999999999
Q ss_pred HHcCCC
Q 028546 168 AALPGM 173 (207)
Q Consensus 168 ~~~~~~ 173 (207)
+++.+.
T Consensus 162 ~~~~~~ 167 (170)
T cd04108 162 ALTFEL 167 (170)
T ss_pred HHHHHc
Confidence 987643
No 57
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.6e-32 Score=202.93 Aligned_cols=165 Identities=31% Similarity=0.560 Sum_probs=145.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+..+||+++|.+|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999999999998888889888888777777888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+ +....+.. .++...++.++++||++|.|++++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999998665 4699999999999853 33344444 5666778899999999999999999999
Q ss_pred HHHcCCCc
Q 028546 167 AAALPGME 174 (207)
Q Consensus 167 ~~~~~~~~ 174 (207)
.+.+.+..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 99886553
No 58
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.3e-32 Score=194.65 Aligned_cols=161 Identities=36% Similarity=0.603 Sum_probs=141.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++||+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++++..++..+++++|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999877666654 45566777888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
||++++.+++.+..|+..+..... .++|+++|+||+|+.+...+...+...++..++.+++++||++|.|++++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876543 5799999999999977666666677777777888999999999999999999998
Q ss_pred HHc
Q 028546 168 AAL 170 (207)
Q Consensus 168 ~~~ 170 (207)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 765
No 59
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=190.57 Aligned_cols=175 Identities=38% Similarity=0.667 Sum_probs=159.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.-.|||+++|..=+|||+|+-++..++|......+..-.+..+.+.+.+....+.||||+|+++|-.+-+.|++++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 34599999999999999999999999998777777767777888888888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||+++.++|+.++.|...++...+..+-.++|+||+|+.+++.+..++++..+...+..++++||+++.||.++|+.|
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence 99999999999999999999999888788899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccCccccc
Q 028546 167 AAALPGMETLSSTKQ 181 (207)
Q Consensus 167 ~~~~~~~~~~~~~~~ 181 (207)
...+.+......+..
T Consensus 171 t~~MiE~~s~~qr~~ 185 (218)
T KOG0088|consen 171 TAKMIEHSSQRQRTR 185 (218)
T ss_pred HHHHHHHhhhccccc
Confidence 998877664444433
No 60
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=6.7e-32 Score=192.20 Aligned_cols=162 Identities=48% Similarity=0.842 Sum_probs=147.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++||+++|++|+|||||++++.++.+.....++.+..+....+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998876777777777778888888889999999999999998888899999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
+|+++++++.....|+..+.......+|+++++||+|+.+.......+...+...++++++++|+++|.|++++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998877667999999999998777777777888888888899999999999999999999998
Q ss_pred Hc
Q 028546 169 AL 170 (207)
Q Consensus 169 ~~ 170 (207)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=6.8e-32 Score=192.85 Aligned_cols=161 Identities=32% Similarity=0.585 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888777888888877777777888899999999999999888889999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
|++++.+++.+..|+..+..... ++|+++|+||+|+.+ ..... ....++...+++++++||++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987765 799999999999863 33333 3345566677899999999999999999999988
Q ss_pred cCCC
Q 028546 170 LPGM 173 (207)
Q Consensus 170 ~~~~ 173 (207)
+...
T Consensus 158 ~~~~ 161 (166)
T cd00877 158 LLGN 161 (166)
T ss_pred HHhc
Confidence 8643
No 62
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.2e-31 Score=192.26 Aligned_cols=163 Identities=39% Similarity=0.631 Sum_probs=144.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+..+||+++|++|+|||||+++|+++.+...+.++.+.+.....+.+++..+.+.+||+||++++..++..+++++|++|
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45699999999999999999999999998877788877777778888898899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER----GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKP 161 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 161 (207)
+|||++++.+++.+..|+..+.... ..+.|+++|+||.|+. .+.+..+++..+++.+++ +++++|+++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 9999999999999999998876543 2468999999999985 556677788888888874 899999999999999
Q ss_pred HHHHHHHHc
Q 028546 162 LFRKIAAAL 170 (207)
Q Consensus 162 ~~~~l~~~~ 170 (207)
+|+++++.+
T Consensus 162 ~~~~~~~~~ 170 (170)
T cd04116 162 AFEEAVRRV 170 (170)
T ss_pred HHHHHHhhC
Confidence 999998753
No 63
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=8.2e-32 Score=191.53 Aligned_cols=160 Identities=29% Similarity=0.540 Sum_probs=137.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|.+|+|||||++++..+.+.....++.+.++......+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998777777666666667778888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
|++++.+++.+..|+..+.... .+.|+++|+||+|+... ...+...++...+++++++|+++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987654 36899999999998422 1233445566678899999999999999999999988
Q ss_pred cCCC
Q 028546 170 LPGM 173 (207)
Q Consensus 170 ~~~~ 173 (207)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 7654
No 64
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=8e-32 Score=193.80 Aligned_cols=158 Identities=34% Similarity=0.541 Sum_probs=137.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|.+|+|||||+.+++.+.+...+.++.. +.....+.+++..+++.+|||+|++.+...+..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999999877777765 444556677888899999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546 90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETSAKA 155 (207)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (207)
|++++++|+.+. .|+..+.... .+.|++||+||.|+.+. +.+..++...++..++. ++++|||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 6888776654 47999999999998543 24677888888888885 999999999
Q ss_pred CCChHHHHHHHHHH
Q 028546 156 GFNIKPLFRKIAAA 169 (207)
Q Consensus 156 ~~~i~~~~~~l~~~ 169 (207)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999864
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=7e-32 Score=192.62 Aligned_cols=159 Identities=32% Similarity=0.504 Sum_probs=137.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++++++.+...+.++.+.. ....+..+...+.+.+||+||++++..++..++..+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 799999999999999999999999877766665533 3445566777789999999999999988888999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
|++++++++.+..|+..+..... .++|+++|+||+|+.+.+++........+..+++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999888766432 568999999999997767777777777888888999999999999999999999
Q ss_pred HHH
Q 028546 167 AAA 169 (207)
Q Consensus 167 ~~~ 169 (207)
+.+
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 864
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=6.3e-32 Score=192.55 Aligned_cols=161 Identities=37% Similarity=0.606 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+|+|++|+|||||++++.+..+...+.++.+ +.....+.+++..+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999988776666555 334556677888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+.+....+....++..++.+++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888766543 46899999999999777777777778888888999999999999999999999998
Q ss_pred HcC
Q 028546 169 ALP 171 (207)
Q Consensus 169 ~~~ 171 (207)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 764
No 67
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.1e-31 Score=192.43 Aligned_cols=162 Identities=39% Similarity=0.655 Sum_probs=146.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc-cccccccccCCEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVI 87 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~il 87 (207)
.+||+++|++|+|||||+++++.+.+...+.++.+.+.....+.+++..+.+.+||++|++++. ..+..+++++|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999999887778888888888888889988999999999999886 468888999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC---CCChHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA---GFNIKPLF 163 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~ 163 (207)
|||++++.++..+..|+..+.... ..++|+++|+||+|+...+++..+....++..++++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887754 35799999999999988888888888888888899999999999 88999999
Q ss_pred HHHHHHc
Q 028546 164 RKIAAAL 170 (207)
Q Consensus 164 ~~l~~~~ 170 (207)
..|.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998876
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.1e-31 Score=191.28 Aligned_cols=162 Identities=32% Similarity=0.547 Sum_probs=140.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
+.+||+++|++|+|||||++++++..+...+.++.+.. ......+++..+.+.+||+||+.++..++..+++++|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 35899999999999999999999988876666666533 34456678888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
|||+++..+++.+..|+..+.... ..+.|+++++||+|+.....+.......++...+++++++|+++|.|++++|++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999998887653 3468999999999997777677777778888888999999999999999999999
Q ss_pred HHHc
Q 028546 167 AAAL 170 (207)
Q Consensus 167 ~~~~ 170 (207)
+..+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8765
No 69
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.5e-31 Score=194.95 Aligned_cols=161 Identities=32% Similarity=0.527 Sum_probs=137.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
.||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++.++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 4899999999999999999999999877777776554 345567777789999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEEecCC
Q 028546 90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFG-VMFIETSAKA 155 (207)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~ 155 (207)
|++++.+|+.+. .|+..+..... +.|+++|+||.|+.+.. .+..++...++...+ +.+++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999985 68888876543 69999999999986543 244556667777776 6899999999
Q ss_pred CCChHHHHHHHHHHcCC
Q 028546 156 GFNIKPLFRKIAAALPG 172 (207)
Q Consensus 156 ~~~i~~~~~~l~~~~~~ 172 (207)
|.|++++|.+|.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998863
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.8e-31 Score=189.58 Aligned_cols=160 Identities=33% Similarity=0.565 Sum_probs=138.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++||+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 4799999999999999999999998877766666543 355567788778899999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +.........++...+++++++|+++|.|++++|++|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876543 4789999999999865 44556667777788889999999999999999999998
Q ss_pred HHc
Q 028546 168 AAL 170 (207)
Q Consensus 168 ~~~ 170 (207)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 764
No 71
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=4.6e-31 Score=187.43 Aligned_cols=161 Identities=40% Similarity=0.723 Sum_probs=143.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++++++.+...+.++.+.......+...+..+.+.+||+||+..+...+..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887666667666776777777777789999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
|++++++++.+..|+..+......++|+++++||+|+.+...+..+.........++.++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888776679999999999998777777777788888889999999999999999999999876
Q ss_pred c
Q 028546 170 L 170 (207)
Q Consensus 170 ~ 170 (207)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.3e-31 Score=194.80 Aligned_cols=165 Identities=24% Similarity=0.352 Sum_probs=137.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------ccccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIRD 81 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 81 (207)
+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998877888877776677778888889999999996543221 2334789
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCC
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTER---GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EFGVMFIETSAKAGF 157 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 157 (207)
+|++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+....++...++. .++++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 4579999999999997666666666665544 568999999999999
Q ss_pred ChHHHHHHHHHHcCCCc
Q 028546 158 NIKPLFRKIAAALPGME 174 (207)
Q Consensus 158 ~i~~~~~~l~~~~~~~~ 174 (207)
|++++|+.++..+....
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999999877443
No 73
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=3.8e-31 Score=199.39 Aligned_cols=161 Identities=29% Similarity=0.472 Sum_probs=139.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.||||+|++.+..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999877667665 556677788888899999999999998888888889999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHh---------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCh
Q 028546 90 DVANRQSFLNTSRWIEEVRTE---------RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-FGVMFIETSAKAGFNI 159 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i 159 (207)
|+++.++|+.+..|+..+... ...++|+++|+||+|+.+.+++..+++..++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999888653 224789999999999976667777777766653 4678999999999999
Q ss_pred HHHHHHHHHHcC
Q 028546 160 KPLFRKIAAALP 171 (207)
Q Consensus 160 ~~~~~~l~~~~~ 171 (207)
+++|++|.+.+.
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999999764
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=4.4e-31 Score=188.17 Aligned_cols=160 Identities=38% Similarity=0.604 Sum_probs=139.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD--KFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+||+++|++|||||||++++..+ .+...+.++.+.++......++ +..+++.+||+||+..+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777778888878777766665 46689999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+..++.......+...++++++++|+.++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999987764 358999999999997777777666666777778899999999999999999999
Q ss_pred HHHc
Q 028546 167 AAAL 170 (207)
Q Consensus 167 ~~~~ 170 (207)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 9875
No 75
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1e-30 Score=187.65 Aligned_cols=164 Identities=41% Similarity=0.685 Sum_probs=143.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||++++....+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988777778777777777888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCChHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~ 164 (207)
|++++.+++.+..|+..+..... .++|+++|+||+|+..+.....+....+....+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999888887655443 368999999999997666666777777777777 7999999999999999999
Q ss_pred HHHHHcCCC
Q 028546 165 KIAAALPGM 173 (207)
Q Consensus 165 ~l~~~~~~~ 173 (207)
++.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999887654
No 76
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=8.9e-31 Score=191.56 Aligned_cols=156 Identities=30% Similarity=0.545 Sum_probs=138.5
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCCh
Q 028546 15 LGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR 94 (207)
Q Consensus 15 ~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 94 (207)
+|.+|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888888888888888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546 95 QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 95 ~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
.+|+.+..|+..+.... .++|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.|++++|.+|++.+...
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 3799999999999853 3444433 456777889999999999999999999999988654
No 77
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-31 Score=175.56 Aligned_cols=167 Identities=36% Similarity=0.655 Sum_probs=155.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+...-+|.+++|.-|+|||+|+++|...+|...-..+.+.++-.+.+.+.+..+++.+||++|+++|+...+.|++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 33445899999999999999999999999876667788889999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
.++|||+++..+++.+..|+...+...+++..+++++||.|+.+.+.+..++++.++.+.++.++++|+++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999987
Q ss_pred HHHHHcC
Q 028546 165 KIAAALP 171 (207)
Q Consensus 165 ~l~~~~~ 171 (207)
...+.+.
T Consensus 167 e~akkiy 173 (215)
T KOG0097|consen 167 ETAKKIY 173 (215)
T ss_pred HHHHHHH
Confidence 7776654
No 78
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.7e-30 Score=184.98 Aligned_cols=164 Identities=38% Similarity=0.670 Sum_probs=145.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...++|+++|++|+|||||++++..+.+.....++.+.+.....+.+.+..+.+.+||+||+..+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34599999999999999999999988887777777777787888888888889999999999999998889999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+.......+|+++|+||+|+.+.+++.......+.......++++|+++|.|++++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766679999999999998777777666677777777889999999999999999999
Q ss_pred HHHc
Q 028546 167 AAAL 170 (207)
Q Consensus 167 ~~~~ 170 (207)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8764
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=1.4e-30 Score=186.50 Aligned_cols=161 Identities=34% Similarity=0.544 Sum_probs=141.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++||+++|.+|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+||+||++++..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 479999999999999999999999987776776653 3456677888888999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCChHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l 166 (207)
||++++++++.+..|+..+.... ..+.|+++++||.|+.+.+....++...+++.++ ++++++||++|.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999998887643 3579999999999998777777777778888887 799999999999999999999
Q ss_pred HHHc
Q 028546 167 AAAL 170 (207)
Q Consensus 167 ~~~~ 170 (207)
...+
T Consensus 160 ~~~~ 163 (168)
T cd04177 160 VRQI 163 (168)
T ss_pred HHHH
Confidence 8765
No 80
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=1.4e-30 Score=183.91 Aligned_cols=159 Identities=52% Similarity=0.890 Sum_probs=145.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++++|||||++++.++.+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
|++++++++.+..|+..+........|+++++||+|+..+.....++...+...++.+++++|++++.|+++++++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999998887567999999999999766777788888888888999999999999999999999863
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=3.8e-30 Score=182.83 Aligned_cols=160 Identities=42% Similarity=0.738 Sum_probs=140.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887767777777777777777887889999999999999988899999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
|++++.+++.+..|+..+..... .+.|+++++||+|+. ......++...++...+++++++|+++|.|++++++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999998877643 578999999999986 3445566777888888999999999999999999999987
Q ss_pred Hc
Q 028546 169 AL 170 (207)
Q Consensus 169 ~~ 170 (207)
.+
T Consensus 160 ~~ 161 (161)
T cd01863 160 KI 161 (161)
T ss_pred hC
Confidence 63
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=1.7e-30 Score=186.95 Aligned_cols=158 Identities=33% Similarity=0.546 Sum_probs=135.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEEC
Q 028546 12 LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDV 91 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 91 (207)
|+|+|++|+|||||+++|.++.+...+.++.... ....+.+++..+.+.+|||||++.+..++..++.++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999999987766665533 345667788888999999999999999999999999999999999
Q ss_pred CChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546 92 ANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFGV-MFIETSAKAGF 157 (207)
Q Consensus 92 ~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (207)
+++++|+.+. .|+..+..... +.|+++|+||.|+.+.. .+..++...++..++. .++++|+++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 58888876554 69999999999986532 2666777888888886 99999999999
Q ss_pred ChHHHHHHHHHHcC
Q 028546 158 NIKPLFRKIAAALP 171 (207)
Q Consensus 158 ~i~~~~~~l~~~~~ 171 (207)
|++++|+.+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 83
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=2.2e-30 Score=189.05 Aligned_cols=158 Identities=30% Similarity=0.403 Sum_probs=128.4
Q ss_pred ceeEEEEcCCCCCHHHHHH-HHhcCC-----CCCccccccce-eeeEEE--------EEECCeEEEEEEEecCChhhhcc
Q 028546 9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDTTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS 73 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 73 (207)
.+||+++|..|+|||||+. ++..+. +...+.|+.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999996 555443 34455566531 222221 25678889999999999875 2
Q ss_pred ccccccccCCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CCCCC
Q 028546 74 LIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVD-------------------KRQVS 133 (207)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~ 133 (207)
....+++++|++|+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999996 5988887655 3689999999999864 36778
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 134 IEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
.++++.+++.++++|++|||++|.|++++|+.++++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999874
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.6e-30 Score=185.53 Aligned_cols=160 Identities=31% Similarity=0.529 Sum_probs=135.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hccccccccccCCEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~ilv~ 89 (207)
||+++|++|+|||||+++++.+.+...+.++.... ....+.+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999888866655555433 345567788888999999999885 3456677889999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC-CChHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTER--GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG-FNIKPLFRKI 166 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~i~~~~~~l 166 (207)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++|+++| .|++++|..|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887654 357999999999998777777788888888888999999999999 5999999999
Q ss_pred HHHcC
Q 028546 167 AAALP 171 (207)
Q Consensus 167 ~~~~~ 171 (207)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 85
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=3.4e-30 Score=182.44 Aligned_cols=154 Identities=18% Similarity=0.371 Sum_probs=129.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|+.|+|||||+.+++.+.|...+.++.+ . ....+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-R-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-c-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999888765544322 2 346678888888999999999864 34668899999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHh-CCeEEEEecCCCCChHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLV--DKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|++++.+|+.+..|+..+..... ..+|+++|+||.|+. +.+++..++.+.+++.. ++.+++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987654 568999999999985 35677777778888776 489999999999999999999
Q ss_pred HHHHc
Q 028546 166 IAAAL 170 (207)
Q Consensus 166 l~~~~ 170 (207)
+++.+
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 98653
No 86
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=5.2e-30 Score=184.31 Aligned_cols=157 Identities=36% Similarity=0.574 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+|++++|++|+|||||+.++..+.+...+.++. .+.....+.+++..+.+.+||+||+.++...+..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 689999999999999999999998887766665 4555566778888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546 90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFGV-MFIETSAKA 155 (207)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (207)
|++++.+|+.+. .|+..+.... .+.|+++++||.|+.+ .+.+..+++..+++..+. +++++|+++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999974 6888777543 3689999999999863 345677788888888887 899999999
Q ss_pred CCChHHHHHHHHH
Q 028546 156 GFNIKPLFRKIAA 168 (207)
Q Consensus 156 ~~~i~~~~~~l~~ 168 (207)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998864
No 87
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-32 Score=185.36 Aligned_cols=169 Identities=37% Similarity=0.605 Sum_probs=152.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC---------CeEEEEEEEecCChhhhccccc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE---------DRTVRLQLWDTAGQERFRSLIP 76 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~ 76 (207)
...-+|.+.+|..|+|||+|+.++..++|....+.+.++++..+.+.++ +..+-+++|||+|+++|+++..
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 3345789999999999999999999999999989999999988877663 3457899999999999999999
Q ss_pred cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA 155 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (207)
.+++.|.+++++||+++..+|-++..|+.++..+. ..++-+++++||.|+.+.+.+..+.+..+++++++|+|++||-+
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 99999999999999999999999999999987654 24566999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHcCCCc
Q 028546 156 GFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~~ 174 (207)
|.|+++..+.|+.++..+-
T Consensus 166 g~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 166 GTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999876543
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.9e-30 Score=185.87 Aligned_cols=162 Identities=23% Similarity=0.307 Sum_probs=138.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+-+||+++|.+|+|||||+++|+++.+. ..+.++.+.++....+.+++..+.+.+||++|+..+..++..++.++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4589999999999999999999999998 778888887777777888888889999999999999888999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 165 (207)
+|||++++.+++.+..|+..+... .++|+++|+||+|+.+...........++..+++ .++++||++|.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999998888866322 3689999999999865544433344566677776 4799999999999999999
Q ss_pred HHHHcC
Q 028546 166 IAAALP 171 (207)
Q Consensus 166 l~~~~~ 171 (207)
|.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 999865
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=7.1e-30 Score=183.69 Aligned_cols=159 Identities=33% Similarity=0.532 Sum_probs=135.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..++.++|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998766666554 334446677888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546 90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETSAKA 155 (207)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (207)
|++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+. ..+..+++..+++.+++ +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999985 577777655 557999999999998543 25666777888888886 799999999
Q ss_pred CCChHHHHHHHHHHc
Q 028546 156 GFNIKPLFRKIAAAL 170 (207)
Q Consensus 156 ~~~i~~~~~~l~~~~ 170 (207)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=5.4e-30 Score=190.74 Aligned_cols=163 Identities=33% Similarity=0.476 Sum_probs=137.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc-cCCEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVI 87 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~il 87 (207)
+||+++|++|+|||||+++|..+.+. ..+.++.+.+....++.+++..+.+.+||++|++.+ ....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 555565555667777888888889999999998722 2334556 8999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+++..++...++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887654 2579999999999998777777777778888889999999999999999999999
Q ss_pred HHHcCCCc
Q 028546 167 AAALPGME 174 (207)
Q Consensus 167 ~~~~~~~~ 174 (207)
+..+....
T Consensus 159 ~~~~~~~~ 166 (221)
T cd04148 159 VRQIRLRR 166 (221)
T ss_pred HHHHHhhh
Confidence 99886433
No 91
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=8.2e-32 Score=176.83 Aligned_cols=174 Identities=39% Similarity=0.688 Sum_probs=159.4
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEEC
Q 028546 13 VFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDV 91 (207)
Q Consensus 13 ~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~ 91 (207)
+++|..++|||+|+-+|..+.|- ....++.++++..+.+..++..+++++|||+|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999999887774 55678999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 92 ANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 92 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
.+..+|++.+.|+.++.++....+.+.+++||+|+..++.+..++.+.++..+++++.++|+++|.|++-.|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999988878889999999999999999999999999999999999999999999999999999988
Q ss_pred CCccCcccccccccc
Q 028546 172 GMETLSSTKQEDMVD 186 (207)
Q Consensus 172 ~~~~~~~~~~~~~~~ 186 (207)
...-..++...-...
T Consensus 161 k~~~~~~~~~~~~~~ 175 (192)
T KOG0083|consen 161 KLKMGAPPEGEFADH 175 (192)
T ss_pred HhccCCCCCCccccc
Confidence 777777666644433
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=3.2e-29 Score=178.39 Aligned_cols=161 Identities=35% Similarity=0.606 Sum_probs=139.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++++...+...+.++.. +........++..+.+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888766555554 334455677888889999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
|++++.++..+..|+..+..... .++|+++|+||+|+.+...........+...++++++++|+++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999988877633 47999999999999765556667777788888899999999999999999999998
Q ss_pred HcC
Q 028546 169 ALP 171 (207)
Q Consensus 169 ~~~ 171 (207)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.4e-29 Score=177.45 Aligned_cols=159 Identities=41% Similarity=0.634 Sum_probs=140.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
||+++|++|+|||||++++++..+.....++.. +.....+..++..+.+.+||+||...+...+..++..+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887766666665 5556667777777899999999999998889999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 91 VANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
+++++++..+..|+..+..... ..+|+++|+||+|+.+.+....+.+..++..++.+++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999988877665 579999999999998767777788888888888999999999999999999999876
Q ss_pred c
Q 028546 170 L 170 (207)
Q Consensus 170 ~ 170 (207)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 4
No 94
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=7.5e-29 Score=181.97 Aligned_cols=164 Identities=31% Similarity=0.500 Sum_probs=134.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
||+++|++|+|||||+++|++..+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++|||||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988766555553 4445567778877899999999999988888889999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHH-HhCCeEEEEecCCCCChHHHHHHHH
Q 028546 91 VANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVD-KRQVSIEEGDGKAK-EFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
++++.+++.+..|+..+..... .++|+++|+||+|+.. ...+.......... .++.+++++|+++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988876654 4799999999999865 34444444443333 4567899999999999999999999
Q ss_pred HHcCCCcc
Q 028546 168 AALPGMET 175 (207)
Q Consensus 168 ~~~~~~~~ 175 (207)
+.+.....
T Consensus 160 ~~~~~~~~ 167 (198)
T cd04147 160 RQANLPYN 167 (198)
T ss_pred HHhhcccc
Confidence 98764433
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.4e-28 Score=177.12 Aligned_cols=160 Identities=33% Similarity=0.555 Sum_probs=132.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
+.||+++|++|+|||||+++|..+.+...+.++.+... ...+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 36899999999999999999999999877777665443 34567788888999999999999998888889999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEecC
Q 028546 89 YDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFGV-MFIETSAK 154 (207)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (207)
||+++.++++.+. .|+..+.... .+.|+++|+||.|+.+.. .+.....+.++..++. .+++|||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999998875 5777776543 368999999999986432 2334566667776664 89999999
Q ss_pred CCCChHHHHHHHHHHc
Q 028546 155 AGFNIKPLFRKIAAAL 170 (207)
Q Consensus 155 ~~~~i~~~~~~l~~~~ 170 (207)
+|.|++++|++|.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 96
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.3e-28 Score=179.15 Aligned_cols=164 Identities=35% Similarity=0.562 Sum_probs=135.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
+.||+|+|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++.++|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 46899999999999999999998888766666554333 34566777778899999999988887777788999999999
Q ss_pred EECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC----------CCCCCHHHHHHHHHHhCC-eEEEEecCCC
Q 028546 89 YDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVD----------KRQVSIEEGDGKAKEFGV-MFIETSAKAG 156 (207)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 156 (207)
||+++.++++.+. .|+..+..... +.|+++|+||+|+.+ .+....+....+++.++. .+|+|||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999985 68888876654 599999999999854 233445677778888885 8999999999
Q ss_pred CChHHHHHHHHHHcCCCc
Q 028546 157 FNIKPLFRKIAAALPGME 174 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~ 174 (207)
.|++++|+++.+.+...+
T Consensus 159 ~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 159 EGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999998775443
No 97
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.2e-28 Score=181.68 Aligned_cols=170 Identities=29% Similarity=0.552 Sum_probs=148.1
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (207)
|+.+..+.++||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|+.++...+..++.
T Consensus 1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~ 80 (215)
T PTZ00132 1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI 80 (215)
T ss_pred CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence 77888899999999999999999999999988888888888888888888878888899999999999999888888999
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
+++++|+|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ..... ...++...++.++++|+++|.|++
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999999887654 46899999999998543 33333 235666778899999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028546 161 PLFRKIAAALPGM 173 (207)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (207)
+.|.+|++.+...
T Consensus 158 ~~f~~ia~~l~~~ 170 (215)
T PTZ00132 158 KPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988654
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.7e-29 Score=183.13 Aligned_cols=167 Identities=22% Similarity=0.338 Sum_probs=129.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE-CCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+.+||+++|++|+|||||++++..+.+... .++.+.+.....+.. ++..+.+.+||+||++++..++..+++++|++|
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999999887654 555555554444443 335679999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH--H----hCCeEEEEecCCCCCh
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK--E----FGVMFIETSAKAGFNI 159 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~----~~~~~~~~s~~~~~~i 159 (207)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+....+.. . .+++++++||++|.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999989988888887776543 246899999999998533 23333333322 1 1246899999999999
Q ss_pred HHHHHHHHHHcCCCccCc
Q 028546 160 KPLFRKIAAALPGMETLS 177 (207)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~ 177 (207)
++++++|.+.+.+.++-.
T Consensus 159 ~~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 159 QEGLEKLYEMILKRRKML 176 (183)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999886444333
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=3.6e-29 Score=179.06 Aligned_cols=155 Identities=21% Similarity=0.332 Sum_probs=122.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+++||+++|++++|||||++++..+.+.. +.++.+.++. .+.. ..+.+.+||+||++++...+..++.++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999877753 3556555443 3333 3478999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----FGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 160 (207)
||||++++.++..+..|+..+... ...++|++||+||+|+.+. ...+++...... ..+.++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999999988877766543 2346899999999998542 344445444321 23468999999999999
Q ss_pred HHHHHHHH
Q 028546 161 PLFRKIAA 168 (207)
Q Consensus 161 ~~~~~l~~ 168 (207)
++|+||.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999964
No 100
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.6e-28 Score=177.62 Aligned_cols=163 Identities=34% Similarity=0.514 Sum_probs=139.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
.||+++|++|+|||||++++.+..+...+.++..... ...+..++..+.+.+||+||+.++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999988766666554332 455667777788999999999999888889999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
|+++..+++.+..|+..+..... .+.|+++|+||+|+...+.....+...++..++.+++++|++++.|+.++|.+|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 56899999999999766666666677777788889999999999999999999999
Q ss_pred HcCCC
Q 028546 169 ALPGM 173 (207)
Q Consensus 169 ~~~~~ 173 (207)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 87643
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.3e-29 Score=181.21 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=122.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.+||+++|++|+|||||++++..+.+. .+.++.+.++. ..... .+.+.+||+||++.+...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999999877774 34566665543 33333 378999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (207)
+|||++++.+++....|+..+.... ..++|++||+||.|+.+.. ..+++..... ...+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999888888775432 2468999999999985432 2222222211 112347789999999999
Q ss_pred HHHHHHHHHcC
Q 028546 161 PLFRKIAAALP 171 (207)
Q Consensus 161 ~~~~~l~~~~~ 171 (207)
++|+||.+.+.
T Consensus 164 e~~~~l~~~~~ 174 (175)
T smart00177 164 EGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.1e-29 Score=181.10 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=124.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
+|+++|++|+|||||+++|.++.+...+.++.+... ..++...+++.+||+||+++++..+..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999888777777766542 2234445799999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH----HHHHHHHHHhCCeEEEEecCC------CCChH
Q 028546 91 VANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI----EEGDGKAKEFGVMFIETSAKA------GFNIK 160 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~i~ 160 (207)
.+++.++...+.|+..+.... .++|+++|+||.|+..++.+.. ..+..++++.++.++++|+++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999998888876543 4799999999999866543321 122444455678899999998 99999
Q ss_pred HHHHHHHH
Q 028546 161 PLFRKIAA 168 (207)
Q Consensus 161 ~~~~~l~~ 168 (207)
++|+.|+.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998864
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.2e-28 Score=176.60 Aligned_cols=158 Identities=22% Similarity=0.367 Sum_probs=125.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
||+++|++++|||||++++.+..+.. +.++.+..+. .+... .+.+.+||+||+..+...+..+++++|+++||+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987654 4555554442 33343 4789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC------CeEEEEecCCCCChHHHH
Q 028546 91 VANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG------VMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~ 163 (207)
++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++...+...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999988886542 24589999999999853 344555555443221 267899999999999999
Q ss_pred HHHHHHcCCCcc
Q 028546 164 RKIAAALPGMET 175 (207)
Q Consensus 164 ~~l~~~~~~~~~ 175 (207)
+||.+.+.+...
T Consensus 154 ~~l~~~~~~~~~ 165 (169)
T cd04158 154 DWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHhhccc
Confidence 999988776543
No 104
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.3e-28 Score=178.05 Aligned_cols=159 Identities=19% Similarity=0.337 Sum_probs=123.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.+||+++|.++||||||++++..+.+.. +.++.+.+.. .+... .+.+.+||+||+++++.++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 456899999999999999999999877753 4566665442 33343 378999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-----CeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-----VMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~ 160 (207)
+|||+++++++..+..++..+... ...++|++|++||+|+.+.. ..++......... +.++++||++|.|++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999999888777766432 22468999999999985443 3333332221111 235689999999999
Q ss_pred HHHHHHHHHcCC
Q 028546 161 PLFRKIAAALPG 172 (207)
Q Consensus 161 ~~~~~l~~~~~~ 172 (207)
++|+||.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 105
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=179.36 Aligned_cols=164 Identities=37% Similarity=0.618 Sum_probs=153.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
.++|++++|.+|+|||+|.-+|+++.|...+.|+.+ +.+.+.+.+++..+.+.|+||+|++.+..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999988 7778888899999999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
||++++..||+.+..+++.+..... ..+|+++|+||.|+...+.+..++.+.++..++++++++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999954443 568999999999999889999999999999999999999999999999999999
Q ss_pred HHHcCC
Q 028546 167 AAALPG 172 (207)
Q Consensus 167 ~~~~~~ 172 (207)
...+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998875
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=4.2e-28 Score=173.84 Aligned_cols=157 Identities=38% Similarity=0.599 Sum_probs=130.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++|+++.+...+.++.. +.....+..++..+.+.+||+||+.++......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999998666555554 444555677788889999999999988888888889999999999
Q ss_pred ECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC-----------CCHHHHHHHHHHhCC-eEEEEecCCC
Q 028546 90 DVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ-----------VSIEEGDGKAKEFGV-MFIETSAKAG 156 (207)
Q Consensus 90 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~s~~~~ 156 (207)
|++++.++... ..|+..+..... +.|+++|+||+|+.+... +..+....+...+++ +++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 99999998885 457776665544 799999999999876542 345666777777887 9999999999
Q ss_pred CChHHHHHHHHH
Q 028546 157 FNIKPLFRKIAA 168 (207)
Q Consensus 157 ~~i~~~~~~l~~ 168 (207)
.|++++|++|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=5.8e-29 Score=176.48 Aligned_cols=152 Identities=21% Similarity=0.345 Sum_probs=117.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|.+++|||||++++..+.+.. +.++.+.+.. .+... .+.+.+||+||++++...+..+++++|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999998887763 4566555432 33333 478999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHH-HHHHH----HhCCeEEEEecCCCCChHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEG-DGKAK----EFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~----~~~~~~~~~s~~~~~~i~~~~ 163 (207)
|+++..+++.+..|+..+... ...+.|++|++||+|+.+.. ...+. ..+.. ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877776432 23468999999999985432 22222 22211 123357899999999999999
Q ss_pred HHHHH
Q 028546 164 RKIAA 168 (207)
Q Consensus 164 ~~l~~ 168 (207)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=8.1e-28 Score=174.14 Aligned_cols=158 Identities=20% Similarity=0.325 Sum_probs=121.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+++||+++|++|+|||||++++..+.+.. +.++.+.++. .+... .+.+.+||+||++++...+..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456999999999999999999998877764 4556555443 33333 478999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----FGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 160 (207)
+|+|++++++++....++..+... ...++|++||+||.|+.+.. ...++...... ..+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999988777766432 22468999999999985432 22222221111 12356799999999999
Q ss_pred HHHHHHHHHcC
Q 028546 161 PLFRKIAAALP 171 (207)
Q Consensus 161 ~~~~~l~~~~~ 171 (207)
++|+||.+.+.
T Consensus 168 e~~~~l~~~i~ 178 (182)
T PTZ00133 168 EGLDWLSANIK 178 (182)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 109
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.7e-27 Score=174.16 Aligned_cols=149 Identities=22% Similarity=0.338 Sum_probs=126.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-----CeEEEEEEEecCChhhhccccccccccCCE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+||+++|..|+|||||+++|..+.+...+.++.+.++..+.+.++ +..+.+.+||++|+++|..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877777776664 467899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-------------------CCCCeEEEEEeCCCCCCCCCCCHH----HHHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTER-------------------GGDVIIVLVGNKTDLVDKRQVSIE----EGDGKA 141 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~ 141 (207)
+|+|||++++.+++.+..|+..+.... ..++|++||+||.|+.+++.+... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987642 246899999999999776655443 234567
Q ss_pred HHhCCeEEEEecCCCCC
Q 028546 142 KEFGVMFIETSAKAGFN 158 (207)
Q Consensus 142 ~~~~~~~~~~s~~~~~~ 158 (207)
++.+++.++.+..++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88899988888886653
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=6.1e-28 Score=173.53 Aligned_cols=155 Identities=24% Similarity=0.357 Sum_probs=121.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+..++|+++|++|+|||||++++.+..+. ...++.+. ....+.+++ +.+.+||+||++.+...+..++.++|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999988553 33444443 233444443 68999999999999889999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (207)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ..+++..... ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999999988888777543 23579999999999986543 3344444332 235689999999999999
Q ss_pred HHHHHHHH
Q 028546 161 PLFRKIAA 168 (207)
Q Consensus 161 ~~~~~l~~ 168 (207)
++|++|.+
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.6e-27 Score=170.31 Aligned_cols=160 Identities=26% Similarity=0.362 Sum_probs=123.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|.+|+|||||+++|.++.+...+..+ . ........+++..+.+.+||+||...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-L-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-c-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999886553322 2 222333445667789999999999888777777889999999999
Q ss_pred ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHhC--CeEEEEecCCCCChHHHHH
Q 028546 90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKEFG--VMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~ 164 (207)
|++++.+++.+. .|+..+..... +.|+++|+||+|+.+..... .+........+. ..++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 67777766544 79999999999996655431 222233333332 3799999999999999999
Q ss_pred HHHHHcCC
Q 028546 165 KIAAALPG 172 (207)
Q Consensus 165 ~l~~~~~~ 172 (207)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99987653
No 112
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=3.2e-27 Score=169.72 Aligned_cols=145 Identities=68% Similarity=1.070 Sum_probs=130.1
Q ss_pred CCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhc
Q 028546 32 DKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER 111 (207)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~ 111 (207)
+.|.+.+.++.+.++....+.+++..+.+.||||+|++++...+..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677788899999988888999999999999999999999999999999999999999999999999999999987766
Q ss_pred CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCCCccC
Q 028546 112 GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176 (207)
Q Consensus 112 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~ 176 (207)
...+|++||+||+|+.+.+.+..++...++..+++.++++||++|.|++++|++|++.+.+.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 56789999999999977677788888888888899999999999999999999999998765533
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1.7e-27 Score=171.34 Aligned_cols=155 Identities=21% Similarity=0.364 Sum_probs=120.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+++|++|+|||||++++..+.+.. ..++.+.++ ..+..+ .+.+.+||+||+..+...+..+++++|++|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 457999999999999999999999888764 345554443 233344 368999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~ 160 (207)
||+|+++++++.....++..+.... ..++|+++++||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 9999999988888877777664432 246899999999998542 2333322221 2234579999999999999
Q ss_pred HHHHHHHH
Q 028546 161 PLFRKIAA 168 (207)
Q Consensus 161 ~~~~~l~~ 168 (207)
++|++|.+
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999975
No 114
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=5.4e-30 Score=176.34 Aligned_cols=176 Identities=35% Similarity=0.557 Sum_probs=163.0
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (207)
|.+.....-+|++|+|..++||||+|++++.+-|...+..+.+.++..+.+.+.+..++..+||++|++.|......|++
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 34444455699999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
+|.+-++||+-++..+|+.+.+|+..+....+ .+|.++|-||+|+.++..+...+++.+++.+.+.++.+|.+...|+.
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM 170 (246)
T ss_pred cccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence 99999999999999999999999999998887 59999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccCc
Q 028546 161 PLFRKIAAALPGMETLS 177 (207)
Q Consensus 161 ~~~~~l~~~~~~~~~~~ 177 (207)
.+|.+|++.+....+++
T Consensus 171 ~vF~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 171 HVFAYLAEKLTQQKKQS 187 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999887665543
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=2.6e-27 Score=169.33 Aligned_cols=153 Identities=19% Similarity=0.236 Sum_probs=118.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
+|+++|++|||||||++++.+. +...+.++.+.. ...+...+ +.+.+||+||+..++.++..+++++|++|||||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 555556666543 33444443 789999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCH-HH---HHHHHHHh--CCeEEEEecCCC------C
Q 028546 91 VANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSI-EE---GDGKAKEF--GVMFIETSAKAG------F 157 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~-~~---~~~~~~~~--~~~~~~~s~~~~------~ 157 (207)
+++..+++.+..|+..+..... .++|+++|+||.|+.+.+.... .. ...++... .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999999999988865432 4689999999999865442111 11 11222222 346788999998 8
Q ss_pred ChHHHHHHHHH
Q 028546 158 NIKPLFRKIAA 168 (207)
Q Consensus 158 ~i~~~~~~l~~ 168 (207)
|+.+.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.8e-27 Score=169.17 Aligned_cols=152 Identities=18% Similarity=0.250 Sum_probs=116.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+|+++|++|+|||||+++|.+..+ ...+.++.+.... .+.. ..+.+.+||+||+.++...+..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998764 4445566554332 2222 3468999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTER---GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~ 161 (207)
|++++.++..+..|+..+.... ..++|+++|+||+|+.+... ..+...... ....+++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887775432 24699999999999864322 222221111 1134689999999999999
Q ss_pred HHHHHHH
Q 028546 162 LFRKIAA 168 (207)
Q Consensus 162 ~~~~l~~ 168 (207)
+|+||.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=8.9e-27 Score=169.91 Aligned_cols=157 Identities=22% Similarity=0.306 Sum_probs=123.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.++++|+++|++|||||||++++.++.+. .+.++.+. ....+.+++ ..+.+||+||+..+...+..+++++|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988774 33444433 334455554 68999999999998888899999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------hCCeEE
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE----------------FGVMFI 149 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 149 (207)
+|+|+++..++.....|+..+.... ..+.|+++++||+|+.+ ....+..+..... ...+++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999988988888887775433 24689999999999854 3445555554432 224689
Q ss_pred EEecCCCCChHHHHHHHHHHc
Q 028546 150 ETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~ 170 (207)
+|||++|.|++++|+||.+.+
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeEecCCCChHHHHHHHHhhC
Confidence 999999999999999998764
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=1.5e-26 Score=166.39 Aligned_cols=157 Identities=24% Similarity=0.376 Sum_probs=125.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.++++|+++|+.|||||||++++..+.+.. ..|+.+... ..+...+ +.+.+||.+|+..++..|..|+.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 678999999999999999999998776543 455555443 4455555 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH------HhCCeEEEEecCCCCCh
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK------EFGVMFIETSAKAGFNI 159 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~i 159 (207)
||+|.++.+.+......+..+... ...++|+++++||.|+.+. ...+++..... ...+.++.||+.+|.|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 999999988888888777776553 2357999999999998654 33444443322 22446899999999999
Q ss_pred HHHHHHHHHHc
Q 028546 160 KPLFRKIAAAL 170 (207)
Q Consensus 160 ~~~~~~l~~~~ 170 (207)
.+.++||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 119
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=4.2e-27 Score=167.66 Aligned_cols=167 Identities=34% Similarity=0.527 Sum_probs=148.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
+..+|++|||+.++|||+|+..+..+.|+..+.|+.- +.+...+.++ +..+.+.+|||+|+++|.......+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3569999999999999999999999999999999987 6677778884 9999999999999999999888889999999
Q ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEE
Q 028546 86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIET 151 (207)
Q Consensus 86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (207)
+++|++.++.+|+++ .+|+.++....+ ++|+++|++|.||.++ ..+..++...+++++|. .+++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999995 889999988775 7999999999999743 24667888999999994 89999
Q ss_pred ecCCCCChHHHHHHHHHHcCCCcc
Q 028546 152 SAKAGFNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~~~~~~ 175 (207)
|++++.|++++|+..+........
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999998875544
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=6e-27 Score=166.16 Aligned_cols=152 Identities=25% Similarity=0.414 Sum_probs=116.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
+|+++|++|+|||||+++|.+..+... .++.+.+. ..+... ..+.+.+||+||+..+...+..++.++|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887643 45544433 333333 34689999999999998889999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH------HHhCCeEEEEecCCCCChHHHH
Q 028546 91 VANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA------KEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...++.... ...+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999988998888887765432 2479999999999985322 222222111 1123478999999999999999
Q ss_pred HHHHH
Q 028546 164 RKIAA 168 (207)
Q Consensus 164 ~~l~~ 168 (207)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=2.3e-26 Score=164.32 Aligned_cols=152 Identities=24% Similarity=0.398 Sum_probs=115.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+|+++|++|+|||||++++.+... ...+.++.+.+. ..+.+++ ..+.+||+||++.+..++..++.++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999976432 122233333333 3444543 689999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-------hCCeEEEEecCCC
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-------FGVMFIETSAKAG 156 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~ 156 (207)
+++|+|+++++++.....|+..+.... ..+.|+++++||+|+.+. ....+....... .+.+++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999888888888887765532 246899999999998543 233333333322 2457999999999
Q ss_pred CChHHHHHHHHH
Q 028546 157 FNIKPLFRKIAA 168 (207)
Q Consensus 157 ~~i~~~~~~l~~ 168 (207)
.|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999964
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=7.5e-27 Score=165.45 Aligned_cols=151 Identities=22% Similarity=0.338 Sum_probs=112.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
||+++|++++|||||++++..+.+... .++.+.+. ..+.. ....+.+||+||+.++...+..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-IPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-CCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 689999999999999999987776532 34444333 23333 34689999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChHHHHH
Q 028546 91 VANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
++++.++.....++..+.. ....++|+++|+||+|+.+... ..+...... ..+.+++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998888776666654433 2224689999999999864431 222221111 1234699999999999999999
Q ss_pred HHHH
Q 028546 165 KIAA 168 (207)
Q Consensus 165 ~l~~ 168 (207)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9975
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=4.6e-26 Score=165.28 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=120.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+++|++|+|||||++++.++.+.. +.++.+. ....+.+.+ +++.+||+||+..+...+..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999887643 2333332 223344444 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEec
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE------------FGVMFIETSA 153 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~ 153 (207)
+|+|++++.++.....++..+.... ..+.|+++|+||+|+.. .+..+++...... ....+++||+
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999999988887777765432 24689999999999853 3444444433211 1235899999
Q ss_pred CCCCChHHHHHHHHHH
Q 028546 154 KAGFNIKPLFRKIAAA 169 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~ 169 (207)
++|.|++++++||...
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.7e-26 Score=163.58 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=118.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
||+++|++|+|||||++++.+..+. ...++.+... ..+.+.+ +.+.+||+||+..+...+..++.++|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988743 3344444333 3344443 689999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChHHHHH
Q 028546 91 VANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
++++.++.....|+..+.... ..+.|+++++||+|+.... ..++...... ....+++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888887775533 3578999999999986543 2333333322 2345899999999999999999
Q ss_pred HHHH
Q 028546 165 KIAA 168 (207)
Q Consensus 165 ~l~~ 168 (207)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9975
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=1.1e-25 Score=172.39 Aligned_cols=142 Identities=22% Similarity=0.394 Sum_probs=121.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-------------eEEEEEEEecCChhhh
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-------------RTVRLQLWDTAGQERF 71 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~ 71 (207)
.....+||+++|..|+|||||+++|.++.+...+.++.+.++..+.+.+++ ..+.+.|||++|+++|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 455679999999999999999999999999888888888877777666642 4578999999999999
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC------------CCCeEEEEEeCCCCCCCC---C---CC
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG------------GDVIIVLVGNKTDLVDKR---Q---VS 133 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~ 133 (207)
..++..+++++|++|+|||+++..+++.+..|+..+..... .++|++||+||+|+.+.+ . ..
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987531 358999999999996543 2 35
Q ss_pred HHHHHHHHHHhCC
Q 028546 134 IEEGDGKAKEFGV 146 (207)
Q Consensus 134 ~~~~~~~~~~~~~ 146 (207)
.+.++.++...++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 7888999988774
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=9.8e-26 Score=161.17 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=110.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---------cccccccc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPSYIRD 81 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~ 81 (207)
+|+++|.+|+|||||+++|.+..+.....+..+.+.....+... .+.+.+|||||...... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999988754333333444444443333 36899999999742110 01111123
Q ss_pred CCEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546 82 SSVAVIVYDVANRQS--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (207)
+|++|+|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.+..+... ...+....+.+++++|+++|.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCH
Confidence 689999999997654 355667777776544 3689999999999865544322 34444445678999999999999
Q ss_pred HHHHHHHHHHc
Q 028546 160 KPLFRKIAAAL 170 (207)
Q Consensus 160 ~~~~~~l~~~~ 170 (207)
++++++|.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 127
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.6e-25 Score=160.38 Aligned_cols=158 Identities=19% Similarity=0.191 Sum_probs=114.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----hccccccc---cccCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS 83 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 83 (207)
+|+++|.+|+|||||+++|.+........+..+.+.....+...+. ..+.+|||||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976653222233333333334444442 3899999999642 11223333 34699
Q ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCh
Q 028546 84 VAVIVYDVANR-QSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-FGVMFIETSAKAGFNI 159 (207)
Q Consensus 84 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i 159 (207)
++++|+|++++ .+++.+..|++.+..... ..+|+++|+||+|+.+.... ......+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888888876542 36899999999998665443 3334444444 3678999999999999
Q ss_pred HHHHHHHHHHc
Q 028546 160 KPLFRKIAAAL 170 (207)
Q Consensus 160 ~~~~~~l~~~~ 170 (207)
+++|++|.+++
T Consensus 160 ~~l~~~i~~~~ 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998763
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=2.1e-25 Score=174.43 Aligned_cols=163 Identities=16% Similarity=0.132 Sum_probs=124.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh-------hccccccccccC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS 82 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 82 (207)
..|+++|.|+||||||++++..........+.++.......+.+.+. .++.+||+||... +...+...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 46899999999999999999987655444566666766666666432 4799999999642 222233456789
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
+++|+|+|+++.++++.+..|...+..... .++|+++|+||+|+.+..+........+....+.+++++||+++.|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999987788888889888876543 368999999999997655444334444445566899999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028546 161 PLFRKIAAALPGM 173 (207)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (207)
+++++|.+.+.+.
T Consensus 318 eL~~~L~~~l~~~ 330 (335)
T PRK12299 318 ELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=2.5e-25 Score=157.14 Aligned_cols=152 Identities=24% Similarity=0.370 Sum_probs=119.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
.|+++|++|+|||||++++.+..+...+.++.+.+... +...+ +.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 47999999999999999999999887777777665543 33333 689999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCChHHHHH
Q 028546 91 VANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
+++..++.....|+..+.... ..++|+++|+||+|+.+.... ....... ....++++++|+++|.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999888888877777765432 246899999999998654322 1111111 12235789999999999999999
Q ss_pred HHHH
Q 028546 165 KIAA 168 (207)
Q Consensus 165 ~l~~ 168 (207)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9976
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=3.3e-25 Score=160.06 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=112.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC-------CCCcccc------ccceeeeEEEEE--E---CCeEEEEEEEecCChhhhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK-------FDTTYQA------TIGIDFLSKTMY--L---EDRTVRLQLWDTAGQERFR 72 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~~~ 72 (207)
+|+++|++++|||||+++|++.. +...+.+ ..++......+. + ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998642 1111111 122233322222 2 5567889999999999999
Q ss_pred cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---eEE
Q 028546 73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---MFI 149 (207)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 149 (207)
..+..++.++|++|+|+|++++.+......|..... .++|+++|+||+|+.+.. .......++..+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 999999999999999999998766666555543322 258899999999985432 12223344555565 489
Q ss_pred EEecCCCCChHHHHHHHHHHcC
Q 028546 150 ETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
++|+++|.|++++|++|.+.+.
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhCC
Confidence 9999999999999999998763
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=1.1e-24 Score=153.42 Aligned_cols=158 Identities=29% Similarity=0.438 Sum_probs=126.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++||+++|.+|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+...++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999988778788888888877777887778999999999989888888888899999999
Q ss_pred EECCCh-HHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 89 YDVANR-QSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 89 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|.... .++.... .|+..+......+.|+++++||.|+.+.. ........+......+++++|+.+|.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999876 5565544 66666655444378999999999986544 22222233333335689999999999999999987
Q ss_pred H
Q 028546 167 A 167 (207)
Q Consensus 167 ~ 167 (207)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 132
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=1.1e-24 Score=148.05 Aligned_cols=161 Identities=22% Similarity=0.330 Sum_probs=125.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.++++|+++|..+|||||++++|.+.... ...|+.+. ..++....+ +++++||.+|+..++..|..|+..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf--~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGF--QIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccce--eeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 45799999999999999999999988732 33444443 445555555 79999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCH----HHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSI----EEGDGKAKEFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (207)
+|+|.+++..++.....++.+... .-...|++|++||.|+..+..... -....++....++++.||+.+|+++.+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 999999999998876666665432 235689999999999864322211 112333455678999999999999999
Q ss_pred HHHHHHHHcCC
Q 028546 162 LFRKIAAALPG 172 (207)
Q Consensus 162 ~~~~l~~~~~~ 172 (207)
-++||...+.+
T Consensus 169 gidWL~~~l~~ 179 (185)
T KOG0073|consen 169 GIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=4.2e-25 Score=162.88 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=115.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh---------hcccccc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPS 77 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 77 (207)
...++|+|+|++|+|||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||... +...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 34589999999999999999999998754433344444444455555543 3799999999632 22222 2
Q ss_pred ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q 028546 78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF 157 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (207)
.+..+|++++|+|++++.++.....|...+......++|+++|+||+|+.+..... ......+.+++++|++++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 35689999999999998888777777776665544568999999999986543321 3334456789999999999
Q ss_pred ChHHHHHHHHHHc
Q 028546 158 NIKPLFRKIAAAL 170 (207)
Q Consensus 158 ~i~~~~~~l~~~~ 170 (207)
|+++++++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998764
No 134
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.8e-25 Score=153.93 Aligned_cols=162 Identities=20% Similarity=0.304 Sum_probs=131.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
-..++.+|+++|..+|||||++++|..+++..+ .|+.+..+.... +.+ +.+++||.+|+.+++..|..|+.+.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--YKN--ISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--Ecc--eEEEEEecCCCcccccchhhhccCCcE
Confidence 356789999999999999999999998888666 666666554444 444 799999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCeEEEEecCCCCC
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----GVMFIETSAKAGFN 158 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~ 158 (207)
+|||+|.++.+.+...++.+..+..... ...|+++++||.|+..+.. ..++....... ...+-.|+|.+|+|
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 9999999999999998887777766554 6899999999999865433 33343333322 23567889999999
Q ss_pred hHHHHHHHHHHcCCC
Q 028546 159 IKPLFRKIAAALPGM 173 (207)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (207)
+.+.++||.+.+...
T Consensus 166 L~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987643
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=2.9e-24 Score=154.27 Aligned_cols=153 Identities=22% Similarity=0.377 Sum_probs=116.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
....++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+...+ ..+.+||+||+..+...+..+++++|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 3457999999999999999999999886643 334444332 3344444 5799999999988888888899999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--------eEEEEecCCC
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV--------MFIETSAKAG 156 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~ 156 (207)
++|+|+++..++.....++..+... ...++|+++++||+|+.+... .+.. ...+++ +++++||++|
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEI---AEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHH---HHHcCCcccCCCeEEEEEeECCCC
Confidence 9999999988888877777665443 224699999999999854332 2222 222222 4789999999
Q ss_pred CChHHHHHHHHH
Q 028546 157 FNIKPLFRKIAA 168 (207)
Q Consensus 157 ~~i~~~~~~l~~ 168 (207)
.|++++|+||.+
T Consensus 161 ~gi~~~~~~l~~ 172 (173)
T cd04155 161 EGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.1e-24 Score=154.88 Aligned_cols=152 Identities=20% Similarity=0.142 Sum_probs=106.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC---CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD---KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+.|+++|.+++|||||+++|.+. .+.....++.+.+.....+.+.+ ...+.+|||||++++......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999999964 33333344555555555555542 358999999999988777777788999999
Q ss_pred EEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHH---hCCeEEEEecCCCCC
Q 028546 87 IVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--VSIEEGDGKAKE---FGVMFIETSAKAGFN 158 (207)
Q Consensus 87 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~ 158 (207)
+|+|+++ .++.+.+. .+... + ..|+++++||+|+.+... ....+....... .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999986 33333222 22211 1 248999999999865421 112233333333 357899999999999
Q ss_pred hHHHHHHHHH
Q 028546 159 IKPLFRKIAA 168 (207)
Q Consensus 159 i~~~~~~l~~ 168 (207)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=6.4e-24 Score=158.15 Aligned_cols=166 Identities=42% Similarity=0.582 Sum_probs=137.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+++|++|+|||||+++|.++.+...+.++.+..+...........+++.+||++|+++++..+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 44999999999999999999999999999888888877777777776667899999999999999999999999999999
Q ss_pred EEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHh---CCeEEEE
Q 028546 88 VYDVAN-RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEF---GVMFIET 151 (207)
Q Consensus 88 v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 151 (207)
++|..+ ..+++....|+..+........|+++++||+|+.... .............. ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999998 5566667889999888776679999999999997663 22222222222222 3348999
Q ss_pred ecC--CCCChHHHHHHHHHHcCCC
Q 028546 152 SAK--AGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 152 s~~--~~~~i~~~~~~l~~~~~~~ 173 (207)
|++ .+.++.++|..+...+...
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHh
Confidence 999 9999999999999988643
No 138
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1.4e-24 Score=151.13 Aligned_cols=148 Identities=20% Similarity=0.308 Sum_probs=111.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc------ccccc--cc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RD 81 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~ 81 (207)
++|+++|.|++|||||+|+|++.+......|+.+.+.....+...+ ..+.++|+||...+... ...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999998777789999998888888888 57899999995443221 22232 68
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (207)
.|++|+|+|+++.+ .-.....++.+. .+|+++++||+|..+...+.. +...+.+.++++++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998643 222333444433 599999999999877666544 35667788899999999999999999
Q ss_pred HHHHH
Q 028546 162 LFRKI 166 (207)
Q Consensus 162 ~~~~l 166 (207)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 139
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=159.61 Aligned_cols=162 Identities=24% Similarity=0.278 Sum_probs=110.5
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC-----------hh
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QE 69 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~ 69 (207)
|..+.....++|+++|.+|+|||||+++|.+..+.....++.+.+ ...+... .+.+||||| ++
T Consensus 1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~ 74 (201)
T PRK04213 1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQE 74 (201)
T ss_pred CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHH
Confidence 445556667999999999999999999999988765555544433 2333222 589999999 45
Q ss_pred hhccccccccc----cCCEEEEEEECCChHHH-H---------HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH
Q 028546 70 RFRSLIPSYIR----DSSVAVIVYDVANRQSF-L---------NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE 135 (207)
Q Consensus 70 ~~~~~~~~~~~----~~d~~ilv~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 135 (207)
.++..+..++. .++++++|+|.+....+ + ....++..+.. .++|+++|+||+|+.+.. .+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~ 148 (201)
T PRK04213 75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DE 148 (201)
T ss_pred HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HH
Confidence 66666555543 46788999998643211 0 00111222222 268999999999986443 23
Q ss_pred HHHHHHHHhCC---------eEEEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546 136 EGDGKAKEFGV---------MFIETSAKAGFNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 136 ~~~~~~~~~~~---------~~~~~s~~~~~~i~~~~~~l~~~~~~~~~ 175 (207)
....+...+++ +++++||++| |+++++++|.+.+.+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 34444555554 5899999999 999999999998865543
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=2.5e-23 Score=145.26 Aligned_cols=153 Identities=48% Similarity=0.790 Sum_probs=121.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECC
Q 028546 14 FLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA 92 (207)
Q Consensus 14 v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 92 (207)
++|++|+|||||++++.+... .....++. .+.....+........+.+||+||...+...+..++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998887 44444454 6777777777777789999999999888888888899999999999999
Q ss_pred ChHHHHHHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 93 NRQSFLNTSRWI-EEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE-GDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 93 ~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
++.++..+..|+ ..+.......+|+++++||+|+.......... ..........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888887772 23333344579999999999987654443332 3334445567999999999999999999986
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.4e-23 Score=148.34 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=112.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc------cccccc--cCCEE
Q 028546 14 FLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYIR--DSSVA 85 (207)
Q Consensus 14 v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~--~~d~~ 85 (207)
++|.+|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+... ...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999876555556667776666777765 47999999998766542 344554 89999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|+|+|+++..... .++..+... ++|+++|+||+|+.+...+... ...+...++.+++++|+.++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL---GLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc---CCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999999754432 333333332 5899999999999765544333 34566677889999999999999999999
Q ss_pred HHHHc
Q 028546 166 IAAAL 170 (207)
Q Consensus 166 l~~~~ 170 (207)
|.+..
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98864
No 142
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=3.5e-24 Score=149.09 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=98.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh-----hhccccccccccCCEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA 85 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 85 (207)
||+++|++|+|||||+++|.+..+. +.++.+. .+. -.+||+||.. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999988652 2222221 111 2689999973 2333333 47899999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~ 164 (207)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....+....++...+. +++++|+++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887755 2343322 248999999999864 33445556666777776 799999999999999999
Q ss_pred HHH
Q 028546 165 KIA 167 (207)
Q Consensus 165 ~l~ 167 (207)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 885
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.3e-23 Score=150.07 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=109.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
.|+++|++|+|||||+++|....+.....++.+.+.....+... ...+.+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988866544444444433334333 13468999999999988888888889999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH-HHHHHHHH------HhCCeEEEEecCCCCChHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI-EEGDGKAK------EFGVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~~i~~~ 162 (207)
|+++....+. ...+..+.. .++|+++|+||+|+.+...... ........ ...++++++|+++|.|++++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9987432111 111222222 2589999999999864321111 11111111 11357999999999999999
Q ss_pred HHHHHHHcC
Q 028546 163 FRKIAAALP 171 (207)
Q Consensus 163 ~~~l~~~~~ 171 (207)
+++|.++..
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999998764
No 144
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=1.7e-23 Score=160.41 Aligned_cols=162 Identities=19% Similarity=0.107 Sum_probs=111.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc--------cccccccc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD 81 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 81 (207)
+|+++|.+|+|||||+|+|++..+.. +..+.++.+.........+ .++.+|||||...... ....++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987642 2333344333333322233 4799999999754211 12345789
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIK 160 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 160 (207)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+.... ......+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999765553 333333333 25899999999998643221 2223333333444 79999999999999
Q ss_pred HHHHHHHHHcCCCccCcccc
Q 028546 161 PLFRKIAAALPGMETLSSTK 180 (207)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~ 180 (207)
+++++|.+.+.+.....+..
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~ 173 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPED 173 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCc
Confidence 99999999998776655544
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=1.8e-23 Score=163.39 Aligned_cols=159 Identities=17% Similarity=0.129 Sum_probs=117.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc----c---ccccccccC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----S---LIPSYIRDS 82 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~---~~~~~~~~~ 82 (207)
..|+++|.++||||||++++..........+.++.......+.+.+ ...+.+||+||..... . .+...+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4689999999999999999998765444445555555566666654 2479999999964221 1 222335679
Q ss_pred CEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q 028546 83 SVAVIVYDVANR---QSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF 157 (207)
Q Consensus 83 d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (207)
+++|+|+|+++. ..++.+..|...+..... ...|+++|+||+|+.++.. ..+..+.+.+.++.+++++||+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 577777777777765432 3689999999999865533 2333444555667889999999999
Q ss_pred ChHHHHHHHHHHc
Q 028546 158 NIKPLFRKIAAAL 170 (207)
Q Consensus 158 ~i~~~~~~l~~~~ 170 (207)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998865
No 146
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=4e-23 Score=162.56 Aligned_cols=166 Identities=19% Similarity=0.279 Sum_probs=117.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhh-cccc-------c
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLI-------P 76 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~-------~ 76 (207)
..+.++|+++|.+++|||||+|+|++..+.. ...+.++.+.....+..++ .++.||||||.... .... .
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 3556799999999999999999999988742 2233334444455555655 47899999997532 2111 1
Q ss_pred cccccCCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEec
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFIETSA 153 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~ 153 (207)
..+.++|+++||+|..+ ++..+. .|+..+... +.|+++|+||+|+.+. ............+ ..++++||
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 23679999999999874 344443 344444432 4577889999998543 2334444444443 57999999
Q ss_pred CCCCChHHHHHHHHHHcCCCccCccccc
Q 028546 154 KAGFNIKPLFRKIAAALPGMETLSSTKQ 181 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 181 (207)
++|.|+++++++|.+.+.+....++...
T Consensus 199 ktg~gv~eL~~~L~~~l~~~~~~~~~~~ 226 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKISPWLYAEDD 226 (339)
T ss_pred cCccCHHHHHHHHHHhCCCCCCCCCCCC
Confidence 9999999999999999998877776554
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=2.7e-23 Score=163.78 Aligned_cols=153 Identities=21% Similarity=0.218 Sum_probs=115.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh---------hhcccccccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI 79 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 79 (207)
-++|+++|.+++|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|.. .+...+ ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 389999999999999999999998765555566677777777777543 489999999972 222222 247
Q ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546 80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (207)
.++|++++|+|++++.+.+.+..|...+......++|+++|+||+|+.+...+ ... .....+++++|+++|.|+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCCCH
Confidence 89999999999999887777766666555544346899999999998643221 111 112346899999999999
Q ss_pred HHHHHHHHHH
Q 028546 160 KPLFRKIAAA 169 (207)
Q Consensus 160 ~~~~~~l~~~ 169 (207)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.2e-23 Score=152.50 Aligned_cols=147 Identities=17% Similarity=0.231 Sum_probs=101.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------ccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY--DKFDTTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 75 (207)
-+|+++|.+++|||||+++|++ +.+.... .++.+.+.......+....+.+.+|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999997 4443321 1223333344444444455789999999999999999
Q ss_pred ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HhCCe
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-SIEEGDGKAK-------EFGVM 147 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 147 (207)
..+++++|++++|+|+++.. +.....++..+.. .++|+++|+||+|+.+.... ..++...+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998632 2223333333332 25899999999998643221 1223333332 23678
Q ss_pred EEEEecCCCCChH
Q 028546 148 FIETSAKAGFNIK 160 (207)
Q Consensus 148 ~~~~s~~~~~~i~ 160 (207)
++++|+++|.|+.
T Consensus 159 iv~~Sa~~g~~~~ 171 (194)
T cd01891 159 VLYASAKNGWASL 171 (194)
T ss_pred EEEeehhcccccc
Confidence 9999999997753
No 149
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.91 E-value=5.1e-23 Score=138.76 Aligned_cols=173 Identities=25% Similarity=0.489 Sum_probs=149.6
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (207)
......+||.++|++..|||||+-.++++.+.+++..+.++.+..+++.+.+..+.+.+||.+|++++..+.+.....+-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 34556799999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-----HHHHHHHHHHhCCeEEEEecCCCCC
Q 028546 84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-----IEEGDGKAKEFGVMFIETSAKAGFN 158 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (207)
+++|+||+++++++..+.+|+.+.+......+ .++|++|.|+.-....+ ...++..++-++...|+||+....|
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAi-PilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAI-PILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccc-eEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 99999999999999999999999987665434 46889999964332222 2334666777899999999999999
Q ss_pred hHHHHHHHHHHcCCCccCc
Q 028546 159 IKPLFRKIAAALPGMETLS 177 (207)
Q Consensus 159 i~~~~~~l~~~~~~~~~~~ 177 (207)
++.+|..+...+-......
T Consensus 174 v~KIFK~vlAklFnL~~ti 192 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNLPWTI 192 (205)
T ss_pred HHHHHHHHHHHHhCCceec
Confidence 9999999998887665444
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=1e-22 Score=143.68 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=108.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------cccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR 80 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 80 (207)
++|+++|++|+|||||++++.+.... ....++.+.+.....+...+ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987652 23344555555555555554 57899999997554322 223567
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
.+|++++|+|++++.+......+.. ....|+++|+||+|+.+.... .......+++++|++++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998766665543332 236899999999998765443 234456789999999999999
Q ss_pred HHHHHHHHHc
Q 028546 161 PLFRKIAAAL 170 (207)
Q Consensus 161 ~~~~~l~~~~ 170 (207)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=2.6e-23 Score=149.53 Aligned_cols=156 Identities=22% Similarity=0.183 Sum_probs=109.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh----cccc---ccccccCCEEE
Q 028546 14 FLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLI---PSYIRDSSVAV 86 (207)
Q Consensus 14 v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~i 86 (207)
++|++|+|||||++++.+..+.....+..+.+.....+.+.+ ...+.+||+||.... ...+ ..++.++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999875322233344444444444551 257899999996321 1222 23467899999
Q ss_pred EEEECCCh------HHHHHHHHHHHHHHHhcC-------CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q 028546 87 IVYDVANR------QSFLNTSRWIEEVRTERG-------GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSA 153 (207)
Q Consensus 87 lv~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 153 (207)
+|+|+.+. .++..+..|...+..... ...|+++|+||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 467777777777654432 36899999999998655443332222333345678999999
Q ss_pred CCCCChHHHHHHHHHHc
Q 028546 154 KAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~ 170 (207)
+++.|++++++++...+
T Consensus 160 ~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 160 KTEEGLDELIRAIYELL 176 (176)
T ss_pred hhhcCHHHHHHHHHhhC
Confidence 99999999999997653
No 152
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.90 E-value=2.5e-23 Score=138.94 Aligned_cols=155 Identities=23% Similarity=0.362 Sum_probs=126.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
++.+.++|...||||||++....+.+.+...|+.+... ..++.+.+.+.+||.||+++|+++|+.|.+++++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 58899999999999999999999888888788877643 23344557999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--------CeEEEEecCCCCCh
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--------VMFIETSAKAGFNI 159 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~i 159 (207)
+|+++++.+......+..+..+.. ..+|++|++||.|+.++.. . ..+..+++ +-.|.+|+++..++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~---~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--K---IALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--H---HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 999998888887777777655443 5799999999999865432 2 22333343 23799999999999
Q ss_pred HHHHHHHHHHcCC
Q 028546 160 KPLFRKIAAALPG 172 (207)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (207)
+.+.+||+++...
T Consensus 171 d~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 171 DITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998654
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.1e-22 Score=137.35 Aligned_cols=114 Identities=32% Similarity=0.568 Sum_probs=89.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFD--TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
||+|+|++|+|||||+++|.+..+. .......+..+.............+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22334445555555667777777799999999998888888889999999999
Q ss_pred EECCChHHHHHHHHH---HHHHHHhcCCCCeEEEEEeCCC
Q 028546 89 YDVANRQSFLNTSRW---IEEVRTERGGDVIIVLVGNKTD 125 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~p~ivv~nK~D 125 (207)
||++++.+++.+..+ +..+.... .++|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999997554 55555433 4599999999998
No 154
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=8.6e-23 Score=149.13 Aligned_cols=158 Identities=19% Similarity=0.205 Sum_probs=105.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC----CC---CCccccccceeeeEEEEEEC------------CeEEEEEEEecCChhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD----KF---DTTYQATIGIDFLSKTMYLE------------DRTVRLQLWDTAGQER 70 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 70 (207)
++|+++|++++|||||+++|++. .+ ..+..++.+.+.....+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999872 12 22223444445444444433 2356899999999876
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHH------
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAK------ 142 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~------ 142 (207)
+..........+|++++|+|+++.........+. +.... +.|+++++||+|+...... ..+.......
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444456789999999998743333322221 12222 4799999999998643221 1222222111
Q ss_pred -HhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 143 -EFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 143 -~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
..+++++++|+++|.|+++++++|.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13568999999999999999999998875
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2e-22 Score=165.42 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=118.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh--------hccccccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR 80 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 80 (207)
.+|+|+|.+++|||||+++|++.... ....++.+.+.......+.+ ..+.+|||||... +......++.
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987653 34455666666666666666 4688999999652 3334556788
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCh
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNI 159 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i 159 (207)
++|++|+|+|++++.++.. ..+...+.. .++|+++|+||+|+.... .+..... ..++ ..+++||++|.|+
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~gi 187 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRGV 187 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCCc
Confidence 9999999999998654432 233333332 268999999999985321 1111111 2343 4579999999999
Q ss_pred HHHHHHHHHHcCCCccCcc-cccccccccccCCCCCC
Q 028546 160 KPLFRKIAAALPGMETLSS-TKQEDMVDVNLKPTVNS 195 (207)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 195 (207)
+++|++|.+.+.+...... ........+-+.++++.
T Consensus 188 ~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGK 224 (472)
T PRK03003 188 GDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGK 224 (472)
T ss_pred HHHHHHHHhhcccccccccccccceEEEEECCCCCCH
Confidence 9999999999865322110 11122334456666653
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.2e-22 Score=166.73 Aligned_cols=167 Identities=25% Similarity=0.253 Sum_probs=119.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChh----------hhcccc-
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI- 75 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~- 75 (207)
..++|+++|.+++|||||+++|++.... ....++++.+.....+..++. .+.+|||||.. .+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 3589999999999999999999988753 445566777776677777764 56899999953 222221
Q ss_pred ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHH-HHHHhCCeEEEEe
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDG-KAKEFGVMFIETS 152 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~-~~~~~~~~~~~~s 152 (207)
..+++++|++|+|+|++++.++..+. ++..+.. .++|+++|+||+|+.+..... ..+... +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999877776653 3444433 368999999999996432110 111111 1111246899999
Q ss_pred cCCCCChHHHHHHHHHHcCCCccCcccc
Q 028546 153 AKAGFNIKPLFRKIAAALPGMETLSSTK 180 (207)
Q Consensus 153 ~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 180 (207)
|++|.|++++|+.+.+.+.....+.++.
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~~i~t~ 391 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDTRIPTG 391 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccCCHH
Confidence 9999999999999999987666555443
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=3.7e-22 Score=161.60 Aligned_cols=152 Identities=20% Similarity=0.224 Sum_probs=116.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------cccc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (207)
..++|+++|++|+|||||+|+|++... .....++++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 348999999999999999999998754 234456777787777787876 46799999997654432 2356
Q ss_pred cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546 79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN 158 (207)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (207)
++++|++++|+|++++.+++.. |+..+.. .++|+++|+||+|+.+. . ...+...++.+++++|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~---~---~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN---S---LEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc---c---hhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999987776654 6555532 25899999999998543 1 1334556678899999998 59
Q ss_pred hHHHHHHHHHHcCCC
Q 028546 159 IKPLFRKIAAALPGM 173 (207)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (207)
++++|+.|.+.+.+.
T Consensus 348 I~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 348 IKALVDLLTQKINAF 362 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=2e-22 Score=163.88 Aligned_cols=148 Identities=26% Similarity=0.289 Sum_probs=114.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------ccccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYI 79 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 79 (207)
.++|+++|.+++|||||+|+|++... .....++++.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 48999999999999999999998765 344566677777777777776 57899999997654332 22357
Q ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546 80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (207)
.++|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... ...+.+++++|+++|.|+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence 89999999999998777665443332 3368999999999986543321 334568999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028546 160 KPLFRKIAAALPG 172 (207)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (207)
++++++|.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 159
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.9e-22 Score=131.09 Aligned_cols=159 Identities=23% Similarity=0.355 Sum_probs=123.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.++++|+.+|..++||||++..|.-+... ...++.+..+ .++.+.+ +.+.+||.+|+++.+..|..|+.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnv--etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeE--EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 56899999999999999999999877654 3355665544 4444444 79999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHH-HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEE-VRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----GVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 160 (207)
||+|..+...++..+..+.. +......+.|++|.+||.|+.++.. .+++....... ..-+.++++.+|+|+.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999988888877555444 4444456899999999999976544 44444333221 2346799999999999
Q ss_pred HHHHHHHHHcCC
Q 028546 161 PLFRKIAAALPG 172 (207)
Q Consensus 161 ~~~~~l~~~~~~ 172 (207)
+-|.||...+.+
T Consensus 168 eglswlsnn~~~ 179 (180)
T KOG0071|consen 168 EGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHhhccC
Confidence 999999987653
No 160
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=8.7e-22 Score=156.94 Aligned_cols=166 Identities=17% Similarity=0.135 Sum_probs=121.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc-------cccccccccCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS 83 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 83 (207)
.|+++|.|+||||||+|+|.+.+......+.+|.......+...+. ..+.|+|+||...-. ......+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 7999999999999999999988765555666776666666666542 369999999965321 11223578899
Q ss_pred EEEEEEECC---ChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCC
Q 028546 84 VAVIVYDVA---NRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFIETSAKAG 156 (207)
Q Consensus 84 ~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 156 (207)
++++|+|++ ....++.+..|+..+..... ...|+++|+||+|+....++ .+....+....+ .+++++||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 44566666777777665432 35899999999998654332 233333444434 47899999999
Q ss_pred CChHHHHHHHHHHcCCCccCcc
Q 028546 157 FNIKPLFRKIAAALPGMETLSS 178 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~~~~ 178 (207)
.|+++++++|.+.+.+....++
T Consensus 319 ~GIdeLl~~I~~~L~~~~~~~~ 340 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPREEA 340 (390)
T ss_pred cCHHHHHHHHHHHhhhCcccCC
Confidence 9999999999999987655443
No 161
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.2e-21 Score=157.05 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=117.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh----ccccc---cccccCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIP---SYIRDSS 83 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~~~d 83 (207)
.|+++|.|+|||||||+++.+.+......+.++.......+.+.+ ...+.+||+||...- ..+.. ..+..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999998775434445555555555555542 247999999996421 11222 2356699
Q ss_pred EEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546 84 VAVIVYDVANR---QSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN 158 (207)
Q Consensus 84 ~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (207)
++|+|+|+++. +.++....|...+..... ..+|++||+||+|+.+. .+....+...++.+++++||+++.|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999854 566777777777765432 36899999999998432 2334455555667899999999999
Q ss_pred hHHHHHHHHHHcCCCcc
Q 028546 159 IKPLFRKIAAALPGMET 175 (207)
Q Consensus 159 i~~~~~~l~~~~~~~~~ 175 (207)
+++++++|.+.+.+.+.
T Consensus 315 I~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 315 LDELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999998876543
No 162
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=6e-22 Score=148.23 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=120.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc--------c
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------P 76 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~ 76 (207)
.++.--++++|.|++|||||+|++++.+.. .++.+.++..........++ .++.|+||||.+...... .
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 355677999999999999999999999986 34445555555555544443 689999999976544332 2
Q ss_pred cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCC
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKA 155 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~ 155 (207)
..+..+|+++||+|+++...-. ....++.+.. .+.|+++++||+|...+................ ..++++||+.
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~ 156 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK 156 (298)
T ss_pred HHhccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence 3367899999999999633221 1222333333 257999999999987665532333333333333 3899999999
Q ss_pred CCChHHHHHHHHHHcCCCccCccccc
Q 028546 156 GFNIKPLFRKIAAALPGMETLSSTKQ 181 (207)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~~~~~~~~~ 181 (207)
|.|++.+.+.+...+.+....++...
T Consensus 157 g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 157 GDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred cCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 99999999999999999887776543
No 163
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=4.2e-22 Score=144.78 Aligned_cols=155 Identities=24% Similarity=0.274 Sum_probs=110.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccc----------------cccceeeeEEEEEECCeEEEEEEEecCChhhhccc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQ----------------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (207)
+|+++|.+|+|||||++++.+........ .+.+........... ...+.+||+||..++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 58999999999999999999876654331 122223223333333 358999999999988888
Q ss_pred cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHH---------
Q 028546 75 IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKE--------- 143 (207)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~--------- 143 (207)
+..++..+|++++|+|++++..... ..++..+.. .+.|+++++||+|+..+.+.. ..........
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888999999999999987554332 233333333 368999999999986532211 2222222222
Q ss_pred -----hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 144 -----FGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 144 -----~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
...+++++|+++|.|+++++++|.+.+.
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3568999999999999999999999864
No 164
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=4.5e-22 Score=140.76 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=101.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh----hhccccccccccCCEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 86 (207)
+|+++|.+++|||||++++.+... .. ..+. .+.+... .+|||||.. ++.......+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~-~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LA-RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cC-ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999876532 11 1111 1122221 269999962 22222223468999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--eEEEEecCCCCChHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV--MFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~i~~~~~ 164 (207)
+|+|+++..++. ..|+..+ ....|+++++||+|+.+ ...+....++...++ +++++|+++|.|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999876542 2343333 12578999999999854 234555666666664 899999999999999999
Q ss_pred HHHHHcCCCccCcc
Q 028546 165 KIAAALPGMETLSS 178 (207)
Q Consensus 165 ~l~~~~~~~~~~~~ 178 (207)
+|.+.+.+.....+
T Consensus 141 ~l~~~~~~~~~~~~ 154 (158)
T PRK15467 141 YLASLTKQEEAGEK 154 (158)
T ss_pred HHHHhchhhhcccc
Confidence 99999876655443
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=4.6e-22 Score=140.34 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=102.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc--------ccccccccCC
Q 028546 13 VFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS 83 (207)
Q Consensus 13 ~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 83 (207)
+++|.+|+|||||++++.+.... ....+..+.+........++ ..+.+|||||...+.. .+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987532 12233334444444455555 5799999999776443 3345678899
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHH
Q 028546 84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPL 162 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 162 (207)
++++|+|..++.+.... .....+... ..|+++|+||+|+.+.... .......++ +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999865433322 222223222 4899999999998654322 223334565 7899999999999999
Q ss_pred HHHHHHHc
Q 028546 163 FRKIAAAL 170 (207)
Q Consensus 163 ~~~l~~~~ 170 (207)
+++|.+.+
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99998764
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=8e-22 Score=164.82 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=115.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC-------CCCccc------cccceeeeEEE--EEE---CCeEEEEEEEecCChhhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK-------FDTTYQ------ATIGIDFLSKT--MYL---EDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~~ 71 (207)
-+|+++|+.++|||||+++|+... +...+. +..++++.... +.+ ++..+.+.+|||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999998642 111111 12234443333 333 456689999999999999
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---eE
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---MF 148 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 148 (207)
...+..++..+|++|+|+|++++.+.+....|...+. .++|+++|+||+|+.+... ......+...+++ .+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~~~~~v 157 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSADP--ERVKKEIEEVIGLDASEA 157 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccCH--HHHHHHHHHHhCCCcceE
Confidence 9999999999999999999998766666655554432 2579999999999854321 1222344444555 48
Q ss_pred EEEecCCCCChHHHHHHHHHHcCC
Q 028546 149 IETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
+++||++|.|++++|++|.+.+..
T Consensus 158 i~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999998864
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=6.2e-22 Score=159.43 Aligned_cols=157 Identities=22% Similarity=0.221 Sum_probs=114.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh--cccc------cccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD 81 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~------~~~~~~ 81 (207)
.+|+++|.+++|||||+|+|++..+.....++.+.+.....+.+.+.. .+.+|||+|..+. ...+ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999887655556667777777777666532 6889999997331 1112 233688
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCChH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIK 160 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~ 160 (207)
+|++|+|+|++++.+++.+..|...+......++|+++|+||+|+.+.... ... ....+.+ ++++|+++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCCCHH
Confidence 999999999999877777655555444443346899999999998643211 111 1123444 5899999999999
Q ss_pred HHHHHHHHHcCC
Q 028546 161 PLFRKIAAALPG 172 (207)
Q Consensus 161 ~~~~~l~~~~~~ 172 (207)
+++++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999998753
No 168
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=7.2e-22 Score=160.19 Aligned_cols=164 Identities=19% Similarity=0.093 Sum_probs=116.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccccC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS 82 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 82 (207)
.+|+++|.|+||||||+++|.+.+......+.++.......+.+.+ ..+.+||+||.... .......+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5799999999999999999998766544456666666666666666 57999999995321 11123346789
Q ss_pred CEEEEEEECCCh----HHHHHHHHHHHHHHHhc-----------CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe
Q 028546 83 SVAVIVYDVANR----QSFLNTSRWIEEVRTER-----------GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM 147 (207)
Q Consensus 83 d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (207)
|++|+|+|+++. +.+..+..+...+.... ....|++||+||+|+.+..+. .+.........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 999999999752 23444444443443221 135899999999998654432 22223333445789
Q ss_pred EEEEecCCCCChHHHHHHHHHHcCCCccC
Q 028546 148 FIETSAKAGFNIKPLFRKIAAALPGMETL 176 (207)
Q Consensus 148 ~~~~s~~~~~~i~~~~~~l~~~~~~~~~~ 176 (207)
++++|+.++.|+++++.+|.+.+...+..
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999998776543
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=9.1e-22 Score=144.81 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=103.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEEEEC---------------------------C----
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTMYLE---------------------------D---- 55 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 55 (207)
++|+++|+.|+|||||+.++.+... ..+.....++......+... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 12222222222211111110 1
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--C
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--S 133 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~ 133 (207)
....+.||||||++++...+...+..+|++++|+|++++.........+..+... . ..|+++|+||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G-LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C-CCcEEEEEEchhccCHHHHHHH
Confidence 1157999999999988888877888999999999998631111111222222222 1 2579999999998643221 1
Q ss_pred HHHHHHHHHHh---CCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 134 IEEGDGKAKEF---GVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 134 ~~~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
.+.+..+...+ +++++++|+++|.|+++++++|.+.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12233333322 5689999999999999999999987764
No 170
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2.1e-21 Score=142.21 Aligned_cols=163 Identities=24% Similarity=0.238 Sum_probs=105.4
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCCh----------hhhc
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFR 72 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~ 72 (207)
.......++|+++|++|+|||||++++++..+.....++.+.+........ ..++.+|||||. ..+.
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 344456699999999999999999999987644333333332222222222 258999999994 3344
Q ss_pred ccccccccc---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHhCCe
Q 028546 73 SLIPSYIRD---SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKEFGVM 147 (207)
Q Consensus 73 ~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~ 147 (207)
.....++.. .+++++++|.+.+.+.... .....+. . .+.|+++++||+|+.+..+.. .+.+.........+
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-E--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-H--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 444445554 4678889998764332221 1112222 2 258899999999986543321 12233333333678
Q ss_pred EEEEecCCCCChHHHHHHHHHHcCC
Q 028546 148 FIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 148 ~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
++++|++++.|+++++++|.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999988764
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=4.4e-21 Score=137.34 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=104.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-----------ccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP 76 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 76 (207)
.++|+++|++|+|||||++++++.... ....+..+.......+..++ ..+.+||+||..+... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 589999999999999999999987643 22233444444344444554 3588999999643311 112
Q ss_pred cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH-HHHh----CCeEEEE
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGK-AKEF----GVMFIET 151 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~~~~----~~~~~~~ 151 (207)
..+.++|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+..+...+..... ...+ ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 345789999999999987665443 22232222 2589999999999876542222222222 2222 3689999
Q ss_pred ecCCCCChHHHHHHHHHH
Q 028546 152 SAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~ 169 (207)
|++++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 172
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=2.7e-21 Score=149.98 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=111.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCChhhhc--------ccccc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPS 77 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~ 77 (207)
.+.-.|+++|++|||||||+|+|++..+.... .+.++.+........++ .++.++||||..... .....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 34567999999999999999999998774322 23333332222222222 689999999965432 22234
Q ss_pred ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCC
Q 028546 78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAG 156 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 156 (207)
.+..+|++++|+|+++..+ ......+..+. ..+.|+++|+||+|+....+........+....+ .+++++|++++
T Consensus 81 ~~~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~ 156 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG 156 (292)
T ss_pred HHhcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence 5678999999999987221 11122222232 2258999999999996432222333344444334 58999999999
Q ss_pred CChHHHHHHHHHHcCCCccCcccc
Q 028546 157 FNIKPLFRKIAAALPGMETLSSTK 180 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~~~~~~ 180 (207)
.|+++++++|.+.+.+.....+..
T Consensus 157 ~gv~~L~~~L~~~l~~~~~~y~~~ 180 (292)
T PRK00089 157 DNVDELLDVIAKYLPEGPPYYPED 180 (292)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCC
Confidence 999999999999998766555443
No 173
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=1.9e-21 Score=158.48 Aligned_cols=165 Identities=20% Similarity=0.209 Sum_probs=115.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc-----------
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------- 75 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 75 (207)
..++++++|.+++|||||+++|++.... ....++++.+.....+..++. .+.+|||||..+.....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999987642 333455555555555555553 78999999975543321
Q ss_pred ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-Hh----CCeEEE
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EF----GVMFIE 150 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~ 150 (207)
..+++.+|++|+|+|++++.+..... ++..+.. .+.|+++|+||+|+.+.. ...+....... .+ ++++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEE
Confidence 23578999999999999876655543 3333332 258999999999986221 11222222222 21 468999
Q ss_pred EecCCCCChHHHHHHHHHHcCCCccCccc
Q 028546 151 TSAKAGFNIKPLFRKIAAALPGMETLSST 179 (207)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~~~~~~~~~~~~ 179 (207)
+||++|.|++++|+++.+.+.......++
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~~~~i~t 352 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENANRRIST 352 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence 99999999999999999988766554443
No 174
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=2.2e-21 Score=162.03 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=119.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc---CCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY---DKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+.|+++|++++|||||+++|.+ +.++.++.++.+++.....+..++ ..+.+||+||+++|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999996 344555667777777776777766 68999999999999888888889999999
Q ss_pred EEEECCC---hHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC--HHHHHHHHHHh----CCeEEEEecCCC
Q 028546 87 IVYDVAN---RQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS--IEEGDGKAKEF----GVMFIETSAKAG 156 (207)
Q Consensus 87 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~----~~~~~~~s~~~~ 156 (207)
+|+|+++ +++.+.+. .+. .. ++| +++|+||+|+.++.... .+++..+...+ +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~-~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLD-LL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHH-Hc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999997 44444332 222 22 466 99999999997544321 22344444443 468999999999
Q ss_pred CChHHHHHHHHHHcCCCcc
Q 028546 157 FNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~ 175 (207)
.|+++++++|.+.+.....
T Consensus 152 ~GI~eL~~~L~~l~~~~~~ 170 (581)
T TIGR00475 152 QGIGELKKELKNLLESLDI 170 (581)
T ss_pred CCchhHHHHHHHHHHhCCC
Confidence 9999999999888776543
No 175
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-20 Score=126.96 Aligned_cols=168 Identities=27% Similarity=0.347 Sum_probs=136.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC--CccccccceeeeEEEEEEC-CeEEEEEEEecCChhhh-ccccccccccCCE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFD--TTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERF-RSLIPSYIRDSSV 84 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~ 84 (207)
-.|++|+|..++|||+++.+++.+... .+..++.. +++...+..+ +..-.+.++||.|.... ..+-..|+.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 479999999999999999999866553 22334443 5555555443 33337999999997766 5566788999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
+++||+..++++|+.+..+-..|.+... +.+|++|++||.|+.+++++..+.+..++....++.+++++.+...+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999997666666655443 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCccCc
Q 028546 164 RKIAAALPGMETLS 177 (207)
Q Consensus 164 ~~l~~~~~~~~~~~ 177 (207)
.+|...+.....++
T Consensus 168 ~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 168 TYLASRLHQPQSKS 181 (198)
T ss_pred HHHHHhccCCcccc
Confidence 99999886554433
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=4.2e-21 Score=156.64 Aligned_cols=149 Identities=21% Similarity=0.233 Sum_probs=107.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh--------hccccccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR 80 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 80 (207)
++|+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987752 23345555666666666766 6899999999876 2333455678
Q ss_pred cCCEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546 81 DSSVAVIVYDVANRQSFL--NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGF 157 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (207)
++|++|+|+|+.++.+.. .+..|+.. . +.|+++|+||+|+.+. + .... ....+++ .++++|+.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~---~---~~piilv~NK~D~~~~-~---~~~~-~~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK---S---NKPVILVVNKVDGPDE-E---ADAY-EFYSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCcEEEEEECccCccc-h---hhHH-HHHhcCCCCCEEEEeeCCC
Confidence 999999999998743322 23333332 2 5899999999996431 1 1111 2234565 48999999999
Q ss_pred ChHHHHHHHHHHcC
Q 028546 158 NIKPLFRKIAAALP 171 (207)
Q Consensus 158 ~i~~~~~~l~~~~~ 171 (207)
|++++++++.+...
T Consensus 149 gv~~l~~~I~~~~~ 162 (435)
T PRK00093 149 GIGDLLDAILEELP 162 (435)
T ss_pred CHHHHHHHHHhhCC
Confidence 99999999998543
No 177
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=6.1e-21 Score=158.88 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=112.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
...+|+++|+.++|||||+++|.+..+.....++.+.++....+.+.+.. .+.||||||++.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 45899999999999999999999988876655555555555555554432 79999999999999998888999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-------hC--CeEEEEecCCCCC
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-------FG--VMFIETSAKAGFN 158 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~ 158 (207)
|+|+++...-+.. +.+.... ..++|+++++||+|+.+. ..+........ ++ .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~-e~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAISHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHH-HHHHHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999863222222 1122222 236899999999998542 22333333322 22 4799999999999
Q ss_pred hHHHHHHHHHH
Q 028546 159 IKPLFRKIAAA 169 (207)
Q Consensus 159 i~~~~~~l~~~ 169 (207)
+++++++|...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999999753
No 178
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=1.6e-21 Score=141.98 Aligned_cols=159 Identities=25% Similarity=0.318 Sum_probs=107.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC------------------CccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFD------------------TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
-++|+++|+.++|||||+.+|++..-. .+.....+++.....+........++++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 478999999999999999999844321 11123334444444444113336899999999999
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHH-HHHHHh----
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-SIEEGD-GKAKEF---- 144 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~-~~~~~~---- 144 (207)
|.......+..+|++|+|+|+.++-... ..+.+..+... ++|+++|+||+|+.+.+-. ..++.. .+.+..
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred eeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 9888888899999999999998653322 23333334333 5889999999998621110 011111 222222
Q ss_pred --CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 145 --GVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 145 --~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
.++++++|+.+|.|++++++.|.+.++
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999999876
No 179
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=7.9e-21 Score=135.02 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=103.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cccceeeeEEEEEECCeEEEEEEEecCChhhhcc--------cccccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYI 79 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 79 (207)
..+|+++|++|+|||||++++.+..+..... +..+.......+ ......+.+||+||...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY--TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE--EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876532222 222222112222 22236899999999643222 233457
Q ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCC
Q 028546 80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFN 158 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 158 (207)
..+|++++|+|++++.+ .....++..+... ..|+++|+||+|+....+...+......... ..+++++|++++.+
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 88999999999997611 1122223333322 4789999999998643332233334444444 36899999999999
Q ss_pred hHHHHHHHHHHc
Q 028546 159 IKPLFRKIAAAL 170 (207)
Q Consensus 159 i~~~~~~l~~~~ 170 (207)
+++++++|.+.+
T Consensus 157 ~~~l~~~l~~~~ 168 (168)
T cd04163 157 VDELLEEIVKYL 168 (168)
T ss_pred hHHHHHHHHhhC
Confidence 999999998753
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=7.5e-21 Score=154.98 Aligned_cols=152 Identities=21% Similarity=0.221 Sum_probs=110.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCCh--------hhhcccccccccc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSYIRD 81 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 81 (207)
+|+++|.+|+|||||+|+|++.... ....++.+.+.......+++ ..+.+|||||. ..+......++..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 23345556666666666666 46999999995 3344556667899
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIK 160 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 160 (207)
+|++++|+|+.++.+... ..+...++.. ++|+++|+||+|+.+..... .....+++ +++++|+.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~~~-----~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDAVA-----AEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCcccccH-----HHHHhcCCCCeEEEeCCcCCChH
Confidence 999999999986433322 1222223322 58999999999986543321 22345566 79999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028546 161 PLFRKIAAALPGM 173 (207)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (207)
++++++.+.+.+.
T Consensus 150 ~ll~~i~~~l~~~ 162 (429)
T TIGR03594 150 DLLDAILELLPEE 162 (429)
T ss_pred HHHHHHHHhcCcc
Confidence 9999999988654
No 181
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=1.1e-20 Score=158.05 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=112.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC--CC-------------CccccccceeeeEEEEEE---CCeEEEEEEEecCChhhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK--FD-------------TTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~--~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~ 71 (207)
.+|+++|+.++|||||+.+|+... +. .+..+..++......+.+ ++..+.+++|||||+.+|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 689999999999999999998521 11 111222232222222222 455689999999999999
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---eE
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---MF 148 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 148 (207)
...+..++..+|++|+|+|++++...+....|..... .++|+++|+||+|+.+... ......+...+++ .+
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~~v 161 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDASDA 161 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcceE
Confidence 9999999999999999999998655555544544322 2588999999999854321 1122334444555 38
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCC
Q 028546 149 IETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
+++||++|.|+++++++|.+.+..-
T Consensus 162 i~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 162 VLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred EEEecCCCCCHHHHHHHHHHhCccc
Confidence 9999999999999999999988643
No 182
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=6.6e-21 Score=150.08 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=126.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhh---------cccccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI 79 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 79 (207)
..|+++|.|++|||||+|+|++.+.. ....++.+.|.......+.+. .|.++||+|.+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999998874 566788888888888888885 5999999996532 22345567
Q ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q 028546 80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFN 158 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 158 (207)
..||++|||+|...+-+-.+ +.+..+... .++|+++|+||+|-.. .+......-.+|+ +++++||..|.|
T Consensus 82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccC
Confidence 89999999999986332222 222222222 2589999999999641 2222333334565 799999999999
Q ss_pred hHHHHHHHHHHcC-CCccCccc-ccccccccccCCCCCCcc
Q 028546 159 IKPLFRKIAAALP-GMETLSST-KQEDMVDVNLKPTVNSSQ 197 (207)
Q Consensus 159 i~~~~~~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 197 (207)
+.++++++++.++ ..+..... ...-..++-++|+++.|+
T Consensus 153 i~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSs 193 (444)
T COG1160 153 IGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSS 193 (444)
T ss_pred HHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchH
Confidence 9999999999985 21111111 133456678889888653
No 183
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=3e-20 Score=158.90 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=117.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc----------c
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------P 76 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------~ 76 (207)
+++++|+++|++++|||||+|++.+......+.++.+.+.....+..+ ..++.+||+||..++.... .
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHH
Confidence 356899999999999999999999887655555666666555555444 3689999999987654321 1
Q ss_pred cc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q 028546 77 SY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK 154 (207)
Q Consensus 77 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 154 (207)
.+ ...+|++++|+|+++.+.. ..+..++.+. ++|+++++||+|+.+.+... ...+.+.+.++++++++|+.
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~ 151 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVST 151 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEee
Confidence 22 2479999999999975432 2233444333 58999999999986555543 45667778889999999999
Q ss_pred CCCChHHHHHHHHHHcC
Q 028546 155 AGFNIKPLFRKIAAALP 171 (207)
Q Consensus 155 ~~~~i~~~~~~l~~~~~ 171 (207)
+|.|++++.+.+.+...
T Consensus 152 ~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 152 RGRGIEALKLAIDRHQA 168 (772)
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999988753
No 184
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.86 E-value=2.6e-20 Score=136.94 Aligned_cols=118 Identities=19% Similarity=0.361 Sum_probs=88.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC-CEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVIVY 89 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~ilv~ 89 (207)
+|+++|++|||||||+++|....+..+..+. ............+....+.+||+||+.+++..+..+++++ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998876554332 2222221221113346899999999999999888899998 9999999
Q ss_pred ECCCh-HHHHHHHHHHHHHHHh---cCCCCeEEEEEeCCCCCCC
Q 028546 90 DVANR-QSFLNTSRWIEEVRTE---RGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 90 d~~~~-~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~D~~~~ 129 (207)
|+++. .++..+..++..+... ....+|+++++||+|+..+
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99986 6677766665554322 2247999999999998644
No 185
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=1.9e-20 Score=158.26 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=111.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEE--EEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
....|+|+|+.++|||||+++|....+.....++.+.++... .+..++....+.||||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 457999999999999999999998877655444444333222 233334457899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-------HHhC--CeEEEEecCCC
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-------KEFG--VMFIETSAKAG 156 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~s~~~~ 156 (207)
|+|+|++++...+.... +..+. ..++|++|++||+|+.+.. .+...... ..++ ++++++||++|
T Consensus 323 ILVVDA~dGv~~QT~E~-I~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEA-INYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHH-HHHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999987422222211 12222 2368999999999986432 22222221 2233 68999999999
Q ss_pred CChHHHHHHHHHHc
Q 028546 157 FNIKPLFRKIAAAL 170 (207)
Q Consensus 157 ~~i~~~~~~l~~~~ 170 (207)
.|+++++++|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999998764
No 186
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=2.3e-20 Score=159.01 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=112.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.....|+|+|+.++|||||+++|....+.....++.+.+.....+.+++ ..++||||||+..|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4458899999999999999999998887655555555555445555555 57999999999999999988899999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHH-------HHHHhC--CeEEEEecCCCC
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDG-------KAKEFG--VMFIETSAKAGF 157 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~s~~~~~ 157 (207)
||+|++++..-+.... +..+. ..++|++|++||+|+.+.. .+.... +...++ ++++++|+++|.
T Consensus 366 LVVdAddGv~~qT~e~-i~~a~---~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 366 LVVAADDGVMPQTIEA-INHAK---AAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEECCCCCCHhHHHH-HHHHH---hcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 9999987322121111 12222 2368999999999985432 122211 122233 689999999999
Q ss_pred ChHHHHHHHHHH
Q 028546 158 NIKPLFRKIAAA 169 (207)
Q Consensus 158 ~i~~~~~~l~~~ 169 (207)
|+++++++|...
T Consensus 439 GI~eLle~I~~~ 450 (787)
T PRK05306 439 GIDELLEAILLQ 450 (787)
T ss_pred CchHHHHhhhhh
Confidence 999999999864
No 187
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.4e-21 Score=133.12 Aligned_cols=164 Identities=24% Similarity=0.307 Sum_probs=123.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC---CC--CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDK---FD--TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (207)
....+.++++|+.++|||||+.++.... +- ....-+.+......++.+.+ ..+.+||.+|++..+++|..|+.
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 3456899999999999999998875321 10 01112233333444555553 58999999999999999999999
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH---HHH---hCCeEEEEec
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGK---AKE---FGVMFIETSA 153 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~---~~~~~~~~s~ 153 (207)
.+|++|+++|+++++.|+.....++.+... .-..+|+++.+||.|+.+..+ ..++... +.. ..+++.++|+
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccchh
Confidence 999999999999999999987777665443 336899999999999854432 3333222 222 2468999999
Q ss_pred CCCCChHHHHHHHHHHcCCC
Q 028546 154 KAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~~ 173 (207)
.+|+||++-..|+...+...
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999998765
No 188
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=1.6e-20 Score=135.65 Aligned_cols=149 Identities=21% Similarity=0.258 Sum_probs=95.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh----------hhccc
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSL 74 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~ 74 (207)
.....++|+++|++|+|||||++++.+..+.....++.+.+.....+..++ .+.+||+||.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 345668999999999999999999998864322223332222222233332 68999999942 23333
Q ss_pred cccccc---cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHhC--Ce
Q 028546 75 IPSYIR---DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAKEFG--VM 147 (207)
Q Consensus 75 ~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~ 147 (207)
...+++ .++++++|+|++++-+.... .++..+.. .++|+++++||+|+.++.+. ..+.++......+ .+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 444554 35899999999874433333 22233322 25899999999998644221 2333344444433 47
Q ss_pred EEEEecCCCCChH
Q 028546 148 FIETSAKAGFNIK 160 (207)
Q Consensus 148 ~~~~s~~~~~~i~ 160 (207)
++++|+++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999973
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=2e-20 Score=131.74 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=104.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------cccccccCCEE
Q 028546 14 FLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYIRDSSVA 85 (207)
Q Consensus 14 v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~ 85 (207)
++|++|+|||||++++.+.... ....+..+............ ...+.+||+||....... ...++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987654 33334444444444443332 358999999997665433 33467899999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH---HHHHHHHhCCeEEEEecCCCCChHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE---GDGKAKEFGVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (207)
++|+|+++........ +...... ...|+++|+||+|+.......... ........+.+++++|+.++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999866555543 2333322 368999999999987554332211 11222234578999999999999999
Q ss_pred HHHHHHHc
Q 028546 163 FRKIAAAL 170 (207)
Q Consensus 163 ~~~l~~~~ 170 (207)
+++|.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 190
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=2.2e-20 Score=156.26 Aligned_cols=146 Identities=17% Similarity=0.245 Sum_probs=112.1
Q ss_pred cCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc------ccccc--ccCCEEEE
Q 028546 16 GDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVI 87 (207)
Q Consensus 16 G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~il 87 (207)
|.+++|||||+|++.+..+...+.++.+.+.....+..++ .++.+||+||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999887666677777777777777766 46899999998776543 23333 37899999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|+|+++.+. ...+..++.+ .++|+++++||+|+.+..... .+.+.+.+..+++++++|+++|.|++++++++.
T Consensus 79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 2233333332 268999999999986655554 345677778899999999999999999999998
Q ss_pred HHc
Q 028546 168 AAL 170 (207)
Q Consensus 168 ~~~ 170 (207)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=6.1e-20 Score=157.25 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=107.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh--------hccccccc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY 78 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 78 (207)
...+|+++|.+++|||||+|+|++.... ....++.+.+.........+ ..+.+|||||... +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3478999999999999999999987652 23345555555554455555 4789999999653 23334556
Q ss_pred cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546 79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGF 157 (207)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (207)
+..+|++|||+|+++.-.... ..|...++. .++|+++|+||+|+.+... .... + ...+. ..+++||.+|.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~---~~~~-~-~~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASEY---DAAE-F-WKLGLGEPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccchh---hHHH-H-HHcCCCCeEEEECCCCC
Confidence 789999999999986321111 234444433 3689999999999854321 1111 1 12233 46899999999
Q ss_pred ChHHHHHHHHHHcCCC
Q 028546 158 NIKPLFRKIAAALPGM 173 (207)
Q Consensus 158 ~i~~~~~~l~~~~~~~ 173 (207)
|+.+++++|.+.+...
T Consensus 423 GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 423 GVGDLLDEALDSLKVA 438 (712)
T ss_pred CchHHHHHHHHhcccc
Confidence 9999999999998653
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=6.6e-20 Score=149.62 Aligned_cols=163 Identities=22% Similarity=0.215 Sum_probs=112.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-----------c
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I 75 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 75 (207)
..++|+++|.+++|||||+++|++... .....++.+.+.....+..++ ..+.+|||||..+.... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 469999999999999999999997653 334455555555555555555 46889999995432211 1
Q ss_pred ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH-HHHHH----hCCeEEE
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD-GKAKE----FGVMFIE 150 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~ 150 (207)
..++..+|++|+|+|++++.+..... ++..+... ..|+++++||+|+.+... ..+.. ..... ..+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA---GRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---CCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 23578899999999999876555432 23333322 589999999999863321 11121 11111 2468999
Q ss_pred EecCCCCChHHHHHHHHHHcCCCccCcc
Q 028546 151 TSAKAGFNIKPLFRKIAAALPGMETLSS 178 (207)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~~~~~~~~~~~ 178 (207)
+||++|.|++++++.+.+.+.....+.+
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~ 351 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANRRIS 351 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcCcCC
Confidence 9999999999999999988765544433
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=3.1e-20 Score=150.87 Aligned_cols=155 Identities=20% Similarity=0.236 Sum_probs=103.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCccccccceeeeEEEEEEC
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DTTYQATIGIDFLSKTMYLE 54 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (207)
..+.++|+++|++++|||||+++|++..- ..+..++.+++.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 34569999999999999999999983211 12234555666655555444
Q ss_pred CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--
Q 028546 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-- 132 (207)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-- 132 (207)
.+.+.+|||||+++|.......+..+|++|+|+|+++..++.....+...+....+ ..|+++++||+|+.+..+.
T Consensus 83 --~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 --KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred --CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHH
Confidence 46899999999888766555567899999999999862122222222222222222 2469999999998652221
Q ss_pred --CHHHHHHHHHHhC-----CeEEEEecCCCCChHHHH
Q 028546 133 --SIEEGDGKAKEFG-----VMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 133 --~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 163 (207)
..+++..+....+ .+++++|+++|.|+++..
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1233344444444 479999999999998744
No 194
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=4.8e-20 Score=149.78 Aligned_cols=154 Identities=20% Similarity=0.234 Sum_probs=104.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc--CCCC-----------------------------CccccccceeeeEEEEEECC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFD-----------------------------TTYQATIGIDFLSKTMYLED 55 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 55 (207)
.+.++|+++|+.++|||||+++|+. +.+. .+..++.+++.....+...
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~- 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD- 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC-
Confidence 4569999999999999999999984 2111 1223455555555555444
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-- 132 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-- 132 (207)
.+.+.+||+||+++|.......+..+|++|+|+|++++++.... ..+...+....+ ..|++|++||+|+.+..+.
T Consensus 84 -~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 -KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred -CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHHH
Confidence 46899999999988877666677899999999999986432111 111112222222 3579999999999642221
Q ss_pred --CHHHHHHHHHHhC-----CeEEEEecCCCCChHHHH
Q 028546 133 --SIEEGDGKAKEFG-----VMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 133 --~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 163 (207)
...++..++...+ ++++++|+++|.|+.+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1234444555554 579999999999998644
No 195
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=1.8e-22 Score=140.05 Aligned_cols=167 Identities=37% Similarity=0.569 Sum_probs=143.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE-EEEEEEecCChhhhccccccccccCCEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.-++++|+|..|+|||+++.+++...++..+..+.+.++..+....++.. +++.+||..|++++..+..-|++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 44899999999999999999999999988888999988888887777653 58999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHhCC-eEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER----GGDVIIVLVGNKTDLVDKRQVS-IEEGDGKAKEFGV-MFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 160 (207)
+|||+++..+|+....|.+.+.... +..+|+++.+||+|+....... ......+.+..++ .++++|++.+.++.
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence 9999999999999999999875542 3567899999999985432222 3556677777777 79999999999999
Q ss_pred HHHHHHHHHcCCCc
Q 028546 161 PLFRKIAAALPGME 174 (207)
Q Consensus 161 ~~~~~l~~~~~~~~ 174 (207)
|+-+.|.+++....
T Consensus 184 Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 184 EAQRELVEKILVND 197 (229)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987554
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=1.3e-19 Score=155.32 Aligned_cols=164 Identities=23% Similarity=0.276 Sum_probs=115.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh----------hccc-c
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL-I 75 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~ 75 (207)
..++|+++|.+++|||||+++|++.... ....++++.+.....+.+++. .+.+|||||..+ +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 3589999999999999999999988752 334556666666666666664 577999999532 1111 1
Q ss_pred ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-Hh----CCeEEE
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EF----GVMFIE 150 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~ 150 (207)
..+++.+|++++|+|++++.+...+. ++..+.. .++|+++|+||+|+.+... .+....... .+ ..++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 23468899999999999877666654 3333332 2589999999999865322 122222221 11 346799
Q ss_pred EecCCCCChHHHHHHHHHHcCCCccCccc
Q 028546 151 TSAKAGFNIKPLFRKIAAALPGMETLSST 179 (207)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~~~~~~~~~~~~ 179 (207)
+||++|.|++++++.+.+.+.....+.++
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T 629 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPT 629 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCCh
Confidence 99999999999999999998876555444
No 197
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.3e-19 Score=143.15 Aligned_cols=152 Identities=25% Similarity=0.285 Sum_probs=118.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccc--------cccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP--------SYIR 80 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~~~ 80 (207)
++++++|.|++|||||+|+|.+... ..+..++++.|+....+.++| +.+.+.||+|.......++ ..+.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 8999999999999999999997766 577889999999999999999 7899999999765444332 2367
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
+||.++||+|++.+.+-... ..+. ....+.|+++|.||.|+..+...... ....+.+++.+|+++|.|++
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~ 365 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLD 365 (454)
T ss_pred hCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHH
Confidence 99999999999975222221 1111 33346899999999999766542211 11224579999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028546 161 PLFRKIAAALPGM 173 (207)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (207)
.+.+.|.+.+...
T Consensus 366 ~L~~~i~~~~~~~ 378 (454)
T COG0486 366 ALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988766
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=6.7e-19 Score=122.68 Aligned_cols=160 Identities=21% Similarity=0.264 Sum_probs=119.8
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-------ccc---ccceeeeEEEEEECCeEEEEEEEecCChhhhcc
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT-------YQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 73 (207)
.+.+...||+|.|+.++||||++.++........ ... .+++..........+. ..++++||||+.+|.-
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~f 83 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKF 83 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHH
Confidence 3456779999999999999999999987664111 111 1222333333333432 4799999999999999
Q ss_pred ccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEE
Q 028546 74 LIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF--GVMFIET 151 (207)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~ 151 (207)
+|..+.++++++|+++|.+.+..+ .....+..+..... +|++|.+||.|+.+... .+.+....... ..++++.
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDALP--PEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCCC--HHHHHHHHHhccCCCceeee
Confidence 999999999999999999998888 44555555544432 89999999999966544 44444444433 7899999
Q ss_pred ecCCCCChHHHHHHHHHH
Q 028546 152 SAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~ 169 (207)
++.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999998877
No 199
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=8.8e-20 Score=134.76 Aligned_cols=147 Identities=22% Similarity=0.273 Sum_probs=95.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CccccccceeeeEEEEEECCeEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------TTYQATIGIDFLSKTMYLEDRTVR 59 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 59 (207)
+|+++|++++|||||+++|+...- . .+..+..+++.....+...+ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 689999999999999999974221 1 11123444444444444444 57
Q ss_pred EEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC----HH
Q 028546 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS----IE 135 (207)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~----~~ 135 (207)
+.+|||||+.++...+...+..+|++|+|+|++++..-.. ..... +....+ ..++++|+||+|+.+..... ..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHcC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8999999998887666667899999999999986532111 11112 222222 24578899999986432211 12
Q ss_pred HHHHHHHHhC---CeEEEEecCCCCChHHH
Q 028546 136 EGDGKAKEFG---VMFIETSAKAGFNIKPL 162 (207)
Q Consensus 136 ~~~~~~~~~~---~~~~~~s~~~~~~i~~~ 162 (207)
+...+...++ .+++++||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3333444455 35899999999998753
No 200
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6.4e-20 Score=127.86 Aligned_cols=167 Identities=31% Similarity=0.542 Sum_probs=144.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...++++++|..|.||+|++++.+.+.|...+.++.+.....-.+..+...+++..|||+|++.+......++-++.+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 35799999999999999999999999999999999999988888877766789999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
++||++..-++.++..|...+.+.+. ++|+++++||.|.... .+ ......+.+..++.+++.|++++-|.+.-|-||
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r-~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR-KV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc-cc-ccccceeeecccceeEEeecccccccccchHHH
Confidence 99999999999999999999988776 4999999999997433 21 112233455668899999999999999999999
Q ss_pred HHHcCCCccC
Q 028546 167 AAALPGMETL 176 (207)
Q Consensus 167 ~~~~~~~~~~ 176 (207)
+..+......
T Consensus 165 arKl~G~p~L 174 (216)
T KOG0096|consen 165 ARKLTGDPSL 174 (216)
T ss_pred hhhhcCCCCe
Confidence 9998765443
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=1.2e-18 Score=130.55 Aligned_cols=152 Identities=22% Similarity=0.237 Sum_probs=106.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc-------cccccccccCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS 83 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 83 (207)
+++++|++|+|||||+++|.+........+.++.+.....+.+.+ ..+.+||+||..... .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998875444445555566666666666 579999999964322 12345688999
Q ss_pred EEEEEEECCChH-HHHHHHHHHHHH----------------------------------------HHh------------
Q 028546 84 VAVIVYDVANRQ-SFLNTSRWIEEV----------------------------------------RTE------------ 110 (207)
Q Consensus 84 ~~ilv~d~~~~~-s~~~~~~~~~~i----------------------------------------~~~------------ 110 (207)
++++|+|+++.. ....+...+..+ ...
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 233232222110 000
Q ss_pred -----------c--CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 111 -----------R--GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 111 -----------~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
. ...+|+++|+||+|+... ++...++. ...++++|+.++.|++++++.|.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLAR--QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 1 134789999999998532 33333333 346899999999999999999998765
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=1.8e-19 Score=150.45 Aligned_cols=159 Identities=18% Similarity=0.301 Sum_probs=111.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc--CCCCCc------------cccccceeeeEEEEEECCeEEEEEEEecCChhhhccccc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY--DKFDTT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 76 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 76 (207)
+|+++|+.++|||||+++|+. +.+... ..+..++++......+....+++.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999985 222111 012223444444333333447899999999999999999
Q ss_pred cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHH-------HHhCCeE
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-SIEEGDGKA-------KEFGVMF 148 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~-------~~~~~~~ 148 (207)
.++..+|++++|+|+.+.. ......|+..+... ++|+++|+||+|+.+.+.. ..+++..+. ....+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998642 23344555555443 5889999999998543221 112222222 1235689
Q ss_pred EEEecCCCC----------ChHHHHHHHHHHcCCC
Q 028546 149 IETSAKAGF----------NIKPLFRKIAAALPGM 173 (207)
Q Consensus 149 ~~~s~~~~~----------~i~~~~~~l~~~~~~~ 173 (207)
+++|+++|. |+..+|+.+.+.+..-
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 999999996 7999999999988744
No 203
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.5e-20 Score=125.32 Aligned_cols=161 Identities=24% Similarity=0.334 Sum_probs=118.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
.+.+|+++|..|+||+|++.++.-++...+ .|+.+..+. ++.. +..++.+||.+|+...+..|+.|+.+.|++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve--~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE--TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc--cccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 679999999999999999998876665433 445444332 2222 45799999999999999999999999999999
Q ss_pred EEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEEeCCCCCCCCC---CCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 88 VYDVANRQSFLNTSR-WIEEVRTERGGDVIIVLVGNKTDLVDKRQ---VSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 88 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
|+|.++.+....... ++..+.+....+...+|++||.|.....- +.........+..-..++.+||..|+|+++.+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 999999887777544 44444444445677899999999743211 11111111122223579999999999999999
Q ss_pred HHHHHHcCCC
Q 028546 164 RKIAAALPGM 173 (207)
Q Consensus 164 ~~l~~~~~~~ 173 (207)
+||.+.+.+.
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999987653
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=6.6e-19 Score=147.04 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=114.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--CCCCCc------------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY--DKFDTT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 75 (207)
.+|+++|+.++|||||+++|+. +.+... ..+..++.+......+....+.+.+|||||+.+|...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 6899999999999999999996 333221 12344555555555555556899999999999999999
Q ss_pred ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HhCCe
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ-VSIEEGDGKAK-------EFGVM 147 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 147 (207)
..+++.+|++|+|+|+++....+. ..++..+... ++|.++++||+|+...+. ...+++..+.. ...++
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~---gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY---GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc---CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence 999999999999999987432222 2333333322 588899999999864322 11222222221 13467
Q ss_pred EEEEecCCCC----------ChHHHHHHHHHHcCCC
Q 028546 148 FIETSAKAGF----------NIKPLFRKIAAALPGM 173 (207)
Q Consensus 148 ~~~~s~~~~~----------~i~~~~~~l~~~~~~~ 173 (207)
++++|+.+|. ++..+++.+.+.+..-
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 9999999998 5899999999988744
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=2.4e-19 Score=144.59 Aligned_cols=163 Identities=22% Similarity=0.183 Sum_probs=107.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC---CccccccceeeeEEEEE--------------E----CC------eEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---TTYQATIGIDFLSKTMY--------------L----ED------RTVR 59 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~--------------~----~~------~~~~ 59 (207)
.+.++|+++|++++|||||+++|.+.... .+..+..+++.....+. . ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45799999999999999999999754221 12222222222211100 0 11 1357
Q ss_pred EEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHH
Q 028546 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEG 137 (207)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~ 137 (207)
+.+||+||+++|...+...+..+|++++|+|++++.......+.+..+. ..+ ..|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 9999999999998888777888999999999996421112222222222 222 2578999999998654321 12333
Q ss_pred HHHHHHh---CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 138 DGKAKEF---GVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 138 ~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
..+.... +++++++|+++|.|+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 3333332 568999999999999999999998765
No 206
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=8.7e-19 Score=127.76 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=95.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (207)
.++|+++|+.++|||||+++|++... ..+..+..+++.. ...+.....++.++||||..+|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCCCeEEEEEECcCHHHHH
Confidence 58999999999999999999985310 1112334444433 33343444688999999998887
Q ss_pred cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHh----
Q 028546 73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEF---- 144 (207)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~---- 144 (207)
......+..+|++++|+|+..+-.-. ..+.+..+... ++| +++++||+|+....+.. ..++.......
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 77777788999999999998642211 22233333322 355 78999999986432211 12334444433
Q ss_pred -CCeEEEEecCCCCCh
Q 028546 145 -GVMFIETSAKAGFNI 159 (207)
Q Consensus 145 -~~~~~~~s~~~~~~i 159 (207)
+++++++|+++|.++
T Consensus 156 ~~v~iipiSa~~g~n~ 171 (195)
T cd01884 156 DNTPIVRGSALKALEG 171 (195)
T ss_pred cCCeEEEeeCccccCC
Confidence 357999999999985
No 207
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=137.57 Aligned_cols=167 Identities=25% Similarity=0.252 Sum_probs=123.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-----------c
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I 75 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 75 (207)
..++|+++|.|++|||||+|++++.+- .....++++.+.....+..+++ ++.++||+|..+-... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 459999999999999999999998765 4566788888888888888884 6888899995542221 1
Q ss_pred ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----h-CCeEEE
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE----F-GVMFIE 150 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~-~~~~~~ 150 (207)
...+..+|++++|+|++.+-+-+.. .+..+-... ..++++++||+|+.+..+...+..+...+. . ..++++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 2346789999999999965443332 222222222 578999999999987655555444333332 2 358999
Q ss_pred EecCCCCChHHHHHHHHHHcCCCccCcccc
Q 028546 151 TSAKAGFNIKPLFRKIAAALPGMETLSSTK 180 (207)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 180 (207)
+||.+|.++.++|+.+.+.+.....+-++.
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts 360 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRISTS 360 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccccCHH
Confidence 999999999999999999988776666554
No 208
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=1e-18 Score=146.66 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=108.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC---CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD---KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
-|+++|+.++|||||+++|.+. .+.++..++.+++.....+...+. ..+.+||+||+++|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999963 344455566666655444444332 368999999999987777777889999999
Q ss_pred EEECCCh---HHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC--HHHHHHHHHHhC---CeEEEEecCCCCC
Q 028546 88 VYDVANR---QSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS--IEEGDGKAKEFG---VMFIETSAKAGFN 158 (207)
Q Consensus 88 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~s~~~~~~ 158 (207)
|+|++++ ++.+.+ ..+. .. ++| ++||+||+|+.++.... .+++..+....+ .+++++|+++|.|
T Consensus 81 VVda~eg~~~qT~ehl----~il~-~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQ-LT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHH-Hc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 9999863 333332 2222 22 244 68999999986533221 223333433333 5899999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 028546 159 IKPLFRKIAAALPGM 173 (207)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (207)
+++++++|.+.....
T Consensus 154 I~~L~~~L~~~~~~~ 168 (614)
T PRK10512 154 IDALREHLLQLPERE 168 (614)
T ss_pred CHHHHHHHHHhhccc
Confidence 999999998876543
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=7.6e-19 Score=141.66 Aligned_cols=164 Identities=20% Similarity=0.170 Sum_probs=105.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEEEE------------------C--C----eEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTMYL------------------E--D----RTV 58 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~~~ 58 (207)
..+.++|+++|+.++|||||+.+|.+... ..+..+..+++.....+.. + + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 34569999999999999999999965322 2222233333322111111 0 0 125
Q ss_pred EEEEEecCChhhhccccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HH
Q 028546 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IE 135 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~ 135 (207)
.+.+|||||+.+|.......+..+|++++|+|++++. ..+. ...+..+... . ..|+++|+||+|+.++.+.. .+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDII-G-IKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHc-C-CCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999888776655566789999999999542 1111 1112222221 1 24689999999987543321 22
Q ss_pred HHHHHHHHh---CCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 136 EGDGKAKEF---GVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 136 ~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
.+..+...+ +.+++++|+++|.|+++++++|...+..
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 333333322 4689999999999999999999987753
No 210
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1.2e-18 Score=124.06 Aligned_cols=151 Identities=25% Similarity=0.327 Sum_probs=97.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----------hccccccccc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIPSYIR 80 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 80 (207)
.|+++|.+|+|||||++.+.++.+.....++.+.......+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996655444344443333333343443 899999999432 3333344443
Q ss_pred ---cCCEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHH--HhCCeEEEE
Q 028546 81 ---DSSVAVIVYDVANRQ--SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAK--EFGVMFIET 151 (207)
Q Consensus 81 ---~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 151 (207)
..+++++++|..+.. ....+..|+... ..|+++++||+|+....+.. ......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457889999997642 212233333322 47899999999985433211 112222222 234589999
Q ss_pred ecCCCCChHHHHHHHHHHc
Q 028546 152 SAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~ 170 (207)
|++++.++.+++++|.+.+
T Consensus 152 Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 152 SSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ecCCCCCHHHHHHHHHHhC
Confidence 9999999999999998763
No 211
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=9.5e-19 Score=145.67 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=102.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE----------------CCeEEEEEEEecCChhhhcc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL----------------EDRTVRLQLWDTAGQERFRS 73 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~D~~G~~~~~~ 73 (207)
.-|+++|++++|||||+++|.+..+......+.+.++-...+.. +.....+.||||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 45899999999999999999988775332221211111111111 11112489999999999999
Q ss_pred ccccccccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC------------CHHHH-
Q 028546 74 LIPSYIRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV------------SIEEG- 137 (207)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~~- 137 (207)
++..++..+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+.+.... .....
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 98889999999999999987 44544432 1222 25899999999998642110 00000
Q ss_pred -----------HHHHH------------Hh--CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 138 -----------DGKAK------------EF--GVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 138 -----------~~~~~------------~~--~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
..+.. .+ ..+++++||++|+|+++++.+|.....
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 01111 11 357999999999999999999876443
No 212
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=2e-18 Score=129.28 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=112.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh------------hccc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FRSL 74 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~~ 74 (207)
.+-++|+|+|+|++|||||.|.+++.++........++....--+...+ ..++.|+||||.-. +...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-ETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-ceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4559999999999999999999999999777666665544433333333 36999999999211 1112
Q ss_pred cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH----------------HHH
Q 028546 75 IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE----------------EGD 138 (207)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~----------------~~~ 138 (207)
....+.+||++++|+|+++....-. -..+..+.... ++|-++|+||+|....+.+... ...
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 2345678999999999995211111 11222222222 5889999999997644322111 111
Q ss_pred HHHHHh-------------CCeEEEEecCCCCChHHHHHHHHHHcCCCccCcccc
Q 028546 139 GKAKEF-------------GVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180 (207)
Q Consensus 139 ~~~~~~-------------~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 180 (207)
++...- .-.+|.+||++|.|++++-++|.....-..+.++..
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~ 280 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD 280 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence 111110 114899999999999999999999998777766543
No 213
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.80 E-value=4.3e-19 Score=118.06 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=118.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
..+++|+++|..++|||||+..|.+..... ..|+.+. ....+..++. +.+++||.+|+...+..|..|+.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~GF--n~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNGF--NTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh-ccccCCc--ceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEE
Confidence 567999999999999999999998776532 2344443 3444545543 69999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH---HHhCCeEEEEecCCCCChHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA---KEFGVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~i~~~ 162 (207)
||+|.++...|+.+-.-+..+.+. ....+|+++.+||.|+..+..++......-. +..-..+-+||++.++|+..-
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence 999999988888876655555443 3467999999999998654333221111101 111235678999999999888
Q ss_pred HHHHHHHcC
Q 028546 163 FRKIAAALP 171 (207)
Q Consensus 163 ~~~l~~~~~ 171 (207)
.+|+.+...
T Consensus 171 ~~wv~sn~~ 179 (185)
T KOG0074|consen 171 SDWVQSNPE 179 (185)
T ss_pred chhhhcCCC
Confidence 888876543
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=6.5e-19 Score=131.12 Aligned_cols=146 Identities=23% Similarity=0.261 Sum_probs=94.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC---------------------------C----CCccccccceeeeEEEEEECCeEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK---------------------------F----DTTYQATIGIDFLSKTMYLEDRTVR 59 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~---------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (207)
+|+++|+.++|||||+.+|+... + ..+..+..+++.....+...+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 58999999999999999996220 0 112234445555555555544 68
Q ss_pred EEEEecCChhhhccccccccccCCEEEEEEECCChHH---H---HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--CC
Q 028546 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQS---F---LNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK--RQ 131 (207)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~--~~ 131 (207)
+.+|||||+.++...+...+..+|++|+|+|+++... + ......+... ...+ ..|+++++||+|+... .+
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG-VKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC-CCeEEEEEEccccccccccH
Confidence 9999999988887777777788999999999987421 1 1122222222 2222 3689999999998632 11
Q ss_pred CCHH----HHHHHHHHhC-----CeEEEEecCCCCChH
Q 028546 132 VSIE----EGDGKAKEFG-----VMFIETSAKAGFNIK 160 (207)
Q Consensus 132 ~~~~----~~~~~~~~~~-----~~~~~~s~~~~~~i~ 160 (207)
...+ .+.......+ ++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1112 2222233333 579999999999986
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=2.7e-18 Score=128.86 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=79.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--------------CC----ccccccceeeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF--------------DT----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (207)
+|+++|+.|+|||||+++|+...- .. +..+..++......+... ..++.+|||||+.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--DTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC--CEEEEEEeCCCccchH
Confidence 589999999999999999975311 00 111222333333344444 4689999999999998
Q ss_pred cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
..+..+++.+|++++|+|+++.... ....++..+... ++|+++++||+|+.
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 8888899999999999999975432 234444444433 58999999999985
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.80 E-value=1.2e-18 Score=129.25 Aligned_cols=113 Identities=27% Similarity=0.326 Sum_probs=79.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------------ccccceeeeE--EEEEE---CCeEEEEEEEecCCh
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTY-----------------QATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQ 68 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~-----------------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~G~ 68 (207)
+|+++|+.++|||||+++|+........ ....++.+.. ..+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999865432110 0111222222 22222 345679999999999
Q ss_pred hhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 69 ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
.++......++..+|++|+|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999987654433 333333322 248999999999975
No 217
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.79 E-value=4.7e-18 Score=127.83 Aligned_cols=155 Identities=18% Similarity=0.193 Sum_probs=119.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------cccccccCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYIRDSS 83 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d 83 (207)
.+.+||-|++|||||++++...+.-....+.++......++.+++.. .+++-|.||.-+-.++ ....++.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 46799999999999999999988877777888888777777777765 5999999995543333 233467899
Q ss_pred EEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546 84 VAVIVYDVANR---QSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGF 157 (207)
Q Consensus 84 ~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 157 (207)
.++||+|++.+ ..++.++.+..++..+.. .+.|.++|+||+|+.+.. ...+..+++...- .++++||+.++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence 99999999987 777777766666655433 578999999999985222 2223555555544 59999999999
Q ss_pred ChHHHHHHHHHH
Q 028546 158 NIKPLFRKIAAA 169 (207)
Q Consensus 158 ~i~~~~~~l~~~ 169 (207)
++.++++.|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999988764
No 218
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.78 E-value=2.3e-18 Score=117.40 Aligned_cols=135 Identities=23% Similarity=0.310 Sum_probs=97.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----hhhhccccccccccCCEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i 86 (207)
||+++|+.|+|||||+++|.+... .+..+..+.+ .=.++|||| ...+.........+||+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998765 3334444321 123479999 3344555555567999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 165 (207)
+|.|++++.+.-. .. +...+ ..|+|=|+||+|+.. .+...+.++++.+.-|+ ++|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p--P~---fa~~f--~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP--PG---FASMF--NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC--ch---hhccc--CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999997532211 01 11122 479999999999963 23456677777887787 6899999999999999998
Q ss_pred HH
Q 028546 166 IA 167 (207)
Q Consensus 166 l~ 167 (207)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 84
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=1.4e-17 Score=139.11 Aligned_cols=157 Identities=22% Similarity=0.264 Sum_probs=101.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC------CeE-----E-----EEEEEecCChhh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE------DRT-----V-----RLQLWDTAGQER 70 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~ 70 (207)
....-|+++|++++|||||+++|.+..+........+.++........ +.. . .++||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 344679999999999999999998765533222211111111000000 111 1 278999999999
Q ss_pred hccccccccccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC----H--------H
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS----I--------E 135 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~----~--------~ 135 (207)
|..++...+..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+....... . .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888899999999999997 555544432 222 268999999999985321100 0 0
Q ss_pred -----------HHHHHHHHh---------------CCeEEEEecCCCCChHHHHHHHHHHc
Q 028546 136 -----------EGDGKAKEF---------------GVMFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 136 -----------~~~~~~~~~---------------~~~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
+........ ..+++++|+.+|.|+++++..+....
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 000111111 25789999999999999998886533
No 220
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=1.2e-17 Score=134.36 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=104.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC-------CC---------CCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD-------KF---------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
.+.++|+++|++++|||||+++|++. .+ ..+..+..+++. ....+.....++.|+||||+.+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence 45699999999999999999999862 10 112233444443 3333443445789999999988
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHhC-
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIV-LVGNKTDLVDKRQVS---IEEGDGKAKEFG- 145 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~- 145 (207)
|.......+..+|++++|+|+.+....+ ..+.+..+... ++|.+ +++||+|+.+..+.. ..++..+...++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 8776667778999999999998642222 22333333322 46754 689999986432211 123444454443
Q ss_pred ----CeEEEEecCCCC----------ChHHHHHHHHHHcC
Q 028546 146 ----VMFIETSAKAGF----------NIKPLFRKIAAALP 171 (207)
Q Consensus 146 ----~~~~~~s~~~~~----------~i~~~~~~l~~~~~ 171 (207)
++++++|+.+|. ++.++++.|...+.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 679999999984 57778888877654
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.1e-17 Score=134.49 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=105.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
.+.++|+++|+.++|||||+++|++... ..+..+..+++. ....+......+.++||||+.+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHH
Confidence 3469999999999999999999985211 112234444444 3344444445789999999988
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC-
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEFG- 145 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~- 145 (207)
|.......+..+|++++|+|+.++..-.. .+.+..+... ++| +++++||+|+.++.+.. ..++..+....+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 87766666788999999999986322121 2222223222 466 67899999986433321 123344444444
Q ss_pred ----CeEEEEecCCCC--------ChHHHHHHHHHHcC
Q 028546 146 ----VMFIETSAKAGF--------NIKPLFRKIAAALP 171 (207)
Q Consensus 146 ----~~~~~~s~~~~~--------~i~~~~~~l~~~~~ 171 (207)
++++++|+++|. ++.++++.|.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 57788888887765
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.6e-17 Score=136.74 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=124.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc------ccccc-
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI- 79 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~- 79 (207)
++..+++++|+|++|||||+|++++......+.++.+.+.....+...++ ++.++|.||.-.+... ...|+
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 35678999999999999999999999988888999999988888888875 5889999995543332 12222
Q ss_pred -ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546 80 -RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN 158 (207)
Q Consensus 80 -~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (207)
...|++|-|+|+++-+.--.+.-. +.+. +.|+++++|++|..+.+.+.. +.+++.+.+|+++++++|++|.|
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLyltlQ---LlE~---g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLTLQ---LLEL---GIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHHHH---HHHc---CCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCC
Confidence 357999999999986543333222 2222 588999999999876665543 45667888999999999999999
Q ss_pred hHHHHHHHHHHcCCCc
Q 028546 159 IKPLFRKIAAALPGME 174 (207)
Q Consensus 159 i~~~~~~l~~~~~~~~ 174 (207)
++++.+.+.+......
T Consensus 152 ~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 152 LEELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999998776554
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.3e-17 Score=134.27 Aligned_cols=146 Identities=18% Similarity=0.133 Sum_probs=96.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC----------------CCCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDK----------------FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (207)
..+.++|+++|+.++|||||+++|++.. ...+..+..+++. ..+.+.....++.+|||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 4556999999999999999999997320 0122234444544 334444445689999999999
Q ss_pred hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC
Q 028546 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEFG 145 (207)
Q Consensus 70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 145 (207)
+|.......+..+|++++|+|+.++...+. .+.+..+... .+| +++++||+|+.++.+.. ..++..+...++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 887766666678899999999986322221 2222223222 355 45789999987543321 123445555554
Q ss_pred -----CeEEEEecCCCC
Q 028546 146 -----VMFIETSAKAGF 157 (207)
Q Consensus 146 -----~~~~~~s~~~~~ 157 (207)
++++++|+.+|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 224
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=2.4e-18 Score=138.38 Aligned_cols=169 Identities=26% Similarity=0.350 Sum_probs=128.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (207)
|++....+.++|+++|..|+||||||-.++...|.++-.+-.. .+... ..+....+..+++|++...+-+.....-++
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccC-CccCcCcCceEEEecccccchhHHHHHHHh
Confidence 7788889999999999999999999999999998765332221 11111 222333456899999876665666677789
Q ss_pred cCCEEEEEEECCChHHHHHH-HHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHhC-C-eEEEEecC
Q 028546 81 DSSVAVIVYDVANRQSFLNT-SRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEE-GDGKAKEFG-V-MFIETSAK 154 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~s~~ 154 (207)
.||++++||+++++++++.+ ..|+..++...+ ..+|+|||+||.|..+......+. ...+..++. + ..++|||+
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~ 158 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL 158 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence 99999999999999999996 779999988874 579999999999987655442222 344444443 2 47999999
Q ss_pred CCCChHHHHHHHHHHcC
Q 028546 155 AGFNIKPLFRKIAAALP 171 (207)
Q Consensus 155 ~~~~i~~~~~~l~~~~~ 171 (207)
+..++.++|....+.+.
T Consensus 159 ~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 159 TLANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhhHhhhhhhhheee
Confidence 99999999998877653
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.76 E-value=1.6e-17 Score=123.61 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=96.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcccc--------------ccceeeeEEEE----------------------EEC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQA--------------TIGIDFLSKTM----------------------YLE 54 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~--------------~~~~~~~~~~~----------------------~~~ 54 (207)
||+++|+.++|||||+++|..+.+...... +.+.......+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997666432211 11110000000 011
Q ss_pred CeEEEEEEEecCChhhhccccccccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028546 55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV 132 (207)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (207)
.....+.++|+||+.+|.......+. .+|++++|+|+..+.. ....+++..+... ++|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 11347899999999888665544443 6899999999986432 2223333333332 5889999999998643221
Q ss_pred C--HHHHHHHHH--------------------------HhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 133 S--IEEGDGKAK--------------------------EFGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 133 ~--~~~~~~~~~--------------------------~~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
. ...+..... ....++|.+|+.+|.|++++...|..+
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 1 111121211 012389999999999999998887543
No 226
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=8.9e-17 Score=125.24 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=121.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh---------hccccccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYIR 80 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~ 80 (207)
..|.++|=.++|||||+|++++........-..+.+...+.+.+.+. ..+.+.||.|.-+ |.+.... ..
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~ 270 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTLEE-VK 270 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHHHH-hh
Confidence 68999999999999999999988877777788888888899888864 4889999999433 2333322 46
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
.+|+++.|+|++++.-.+.+..-...+.+.....+|+++|+||+|+..+... ...........+.+||++|.|++
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~-----~~~~~~~~~~~v~iSA~~~~gl~ 345 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI-----LAELERGSPNPVFISAKTGEGLD 345 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh-----hhhhhhcCCCeEEEEeccCcCHH
Confidence 8999999999999866666666666666554557999999999998655441 11122222268999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028546 161 PLFRKIAAALPGM 173 (207)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (207)
.+.+.|.+.+...
T Consensus 346 ~L~~~i~~~l~~~ 358 (411)
T COG2262 346 LLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999988744
No 227
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=6.2e-17 Score=130.75 Aligned_cols=147 Identities=17% Similarity=0.134 Sum_probs=96.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (207)
..+.++|+++|++++|||||+++|++..- ..+..++.+++.... .+.....++.++||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~--~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHV--EYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEE--EEccCCeEEEEEECCChH
Confidence 34569999999999999999999986311 122224444444333 333334578899999988
Q ss_pred hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC
Q 028546 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEFG 145 (207)
Q Consensus 70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 145 (207)
+|.......+..+|++++|+|+..+-. ....+.+..+... ++| +++++||+|+.+..+.. ..++..+....+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 887777777789999999999986422 1122222323222 467 77899999997543321 123444444433
Q ss_pred -----CeEEEEecCCCCC
Q 028546 146 -----VMFIETSAKAGFN 158 (207)
Q Consensus 146 -----~~~~~~s~~~~~~ 158 (207)
++++++|+.+|.+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 FPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCcceEEEcchhhccc
Confidence 5799999999874
No 228
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.75 E-value=3.8e-17 Score=131.81 Aligned_cols=147 Identities=24% Similarity=0.267 Sum_probs=95.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCccccccceeeeEEEEEECCe
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF---------------------------------DTTYQATIGIDFLSKTMYLEDR 56 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~ 56 (207)
++|+++|+.++|||||+++|+...- .++..+..+++.....+...+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 5899999999999999999962210 112223344555444444443
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH-
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE- 135 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~- 135 (207)
.++.|+||||+++|.......+..+|++++|+|+..+..-+... .+..+. ..+ ..+++|++||+|+.+..+...+
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~~~~~-~~~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HSYIAS-LLG-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HHHHHH-HcC-CCcEEEEEEecccccchHHHHHH
Confidence 58999999999988776666788999999999998643222111 111122 222 2468999999998653321122
Q ss_pred ---HHHHHHHHhC---CeEEEEecCCCCChHH
Q 028546 136 ---EGDGKAKEFG---VMFIETSAKAGFNIKP 161 (207)
Q Consensus 136 ---~~~~~~~~~~---~~~~~~s~~~~~~i~~ 161 (207)
+...+...++ ++++++|+.+|.|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222233333 4699999999999875
No 229
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=7.1e-17 Score=122.32 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=119.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hc-ccc-------ccc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FR-SLI-------PSY 78 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~-~~~-------~~~ 78 (207)
....|+|.|.|++|||||++.+.+.+......|.++-.+....+...+ .+++++||||.=+ .. .+. ...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 347799999999999999999999999878888888888888876665 5899999999321 11 111 111
Q ss_pred cccCCEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546 79 IRDSSVAVIVYDVAN--RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKA 155 (207)
Q Consensus 79 ~~~~d~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 155 (207)
-.-.++++|++|.+. +-+.+.+..++..+...+. .|+++|+||+|..+..... ++.......+. ....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeee
Confidence 123689999999985 5677888999999998886 8999999999986554432 33333444444 478899999
Q ss_pred CCChHHHHHHHHHHcCC
Q 028546 156 GFNIKPLFRKIAAALPG 172 (207)
Q Consensus 156 ~~~i~~~~~~l~~~~~~ 172 (207)
+.+++.+.+.+.....+
T Consensus 321 ~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 321 GCGLDKLREEVRKTALE 337 (346)
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 99999888888877543
No 230
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=113.96 Aligned_cols=162 Identities=22% Similarity=0.216 Sum_probs=107.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhhhccc
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL 74 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 74 (207)
+......|+++|..++|||||||++++++--.-...++|.+.....+.+++ .+.++|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 344557999999999999999999999763222234445555556666666 378999999 3445556
Q ss_pred ccccccc---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--HHHH-HHHHHhCCe-
Q 028546 75 IPSYIRD---SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--EEGD-GKAKEFGVM- 147 (207)
Q Consensus 75 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~-~~~~~~~~~- 147 (207)
+..|++. -.++++++|+..+-.-.+. +.++-+... ++|++|++||+|.....+... ..+. .+.......
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence 6666643 4688999999864332221 222222222 699999999999876544321 1111 111112222
Q ss_pred -EEEEecCCCCChHHHHHHHHHHcCCC
Q 028546 148 -FIETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 148 -~~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
++..|+..+.|++++...|.+.+.+.
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhhcc
Confidence 88999999999999999998877643
No 231
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.74 E-value=4.3e-17 Score=133.49 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=96.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------------CccccccceeeeEEEEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------------TTYQATIGIDFLSKTMYL 53 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~ 53 (207)
...++|+++|+.++|||||+++|+...- . .+..+..+++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4569999999999999999999973321 0 111223344444334433
Q ss_pred CCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028546 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS 133 (207)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~ 133 (207)
+ ..++.|+||||+.+|.......+..+|++++|+|+..+-.-..... ..+....+ ..|++|++||+|+.+..+..
T Consensus 105 ~--~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~--~~l~~~lg-~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 105 E--KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH--SFIATLLG-IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred C--CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH--HHHHHHhC-CCceEEEEEeeccccchhHH
Confidence 3 4589999999988886655555789999999999986421111111 11121222 24789999999986433222
Q ss_pred HHHHH----HHHHHh----CCeEEEEecCCCCChHHH
Q 028546 134 IEEGD----GKAKEF----GVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 134 ~~~~~----~~~~~~----~~~~~~~s~~~~~~i~~~ 162 (207)
..... .+.... ..+++++|+++|.|+.++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 22222 222232 367999999999998764
No 232
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5.9e-17 Score=126.19 Aligned_cols=154 Identities=24% Similarity=0.322 Sum_probs=107.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC-------------------------------CCCCccccccceeeeEEEEEECC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDTTYQATIGIDFLSKTMYLED 55 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (207)
.+.++++++|+..+|||||+-+|+.. ...+++.++.+++.....+ ..
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f--et 82 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF--ET 82 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe--ec
Confidence 45699999999999999999998721 1123344455555554444 44
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---H--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---S--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
..++++++|+||+.+|-...-.-+.+||++|||+|+.+.+ . .+.+.+....+....+ -...+|++||+|+.+.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence 4478999999998888777777788999999999998752 1 1222333333333333 45689999999998876
Q ss_pred CCCHHHHHHHHHH----hC-----CeEEEEecCCCCChHHHH
Q 028546 131 QVSIEEGDGKAKE----FG-----VMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 131 ~~~~~~~~~~~~~----~~-----~~~~~~s~~~~~~i~~~~ 163 (207)
+-.++++...... .+ ++|+++|+..|+|+.+.-
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 6666555443332 22 569999999999976544
No 233
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=9.5e-17 Score=128.45 Aligned_cols=158 Identities=20% Similarity=0.272 Sum_probs=117.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC---------------CCCccccccceeeeEEE-EEECCeEEEEEEEecCChhhh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDK---------------FDTTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~ 71 (207)
+--++.|+.+...|||||..+|+... ...++.++.++.-.... ++.++..+.++++||||+-+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 34689999999999999999997211 12233444444444333 344567789999999999999
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----hCCe
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE----FGVM 147 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~ 147 (207)
.......+..++++|+|+|++.+-.-+++..++..+.. +.-+|.|+||+|+..++. +........ ...+
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adp---e~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADP---ERVENQLFELFDIPPAE 211 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCH---HHHHHHHHHHhcCCccc
Confidence 99999999999999999999976666666665555543 467899999999965543 222222222 2347
Q ss_pred EEEEecCCCCChHHHHHHHHHHcCC
Q 028546 148 FIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 148 ~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
++.+||++|.|++++++.+++.++.
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCCC
Confidence 9999999999999999999999874
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.73 E-value=9e-17 Score=130.64 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=100.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEECC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLED 55 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (207)
.+.++|+++|+.++|||||+.+|+... ...++.+..+++..... +..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~--~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWK--FET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEE--ecC
Confidence 346999999999999999999987311 01222334444444333 444
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHH-------HHHHHHHHHHHhcCCCC-eEEEEEeCCCCC
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFL-------NTSRWIEEVRTERGGDV-IIVLVGNKTDLV 127 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-p~ivv~nK~D~~ 127 (207)
....++++|+||+.+|.......+..+|++|+|+|+++. .|+ ...+.+..+... .+ +++|++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence 457899999999999999888889999999999999862 232 222222222221 35 478899999975
Q ss_pred CCC--CC----CHHHHHHHHHHhC-----CeEEEEecCCCCChHH
Q 028546 128 DKR--QV----SIEEGDGKAKEFG-----VMFIETSAKAGFNIKP 161 (207)
Q Consensus 128 ~~~--~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~ 161 (207)
+.. +. ..+++..++...+ ++++++|+.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 11 1334455555555 5799999999999853
No 235
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=4.7e-17 Score=120.68 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=79.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--C--------------CccccccceeeeEEEEEEC--------CeEEEEEEEecC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF--D--------------TTYQATIGIDFLSKTMYLE--------DRTVRLQLWDTA 66 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 66 (207)
+|+++|+.++|||||+.+|+...- . .+..+..++......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999974321 0 1111222333222233333 336789999999
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
|+.+|......++..+|++++|+|+.++...+... .+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCcc
Confidence 99999999999999999999999999765444422 2222222 257899999999975
No 236
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.73 E-value=1.4e-16 Score=129.65 Aligned_cols=150 Identities=21% Similarity=0.213 Sum_probs=97.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CC-----------------------------CCccccccceeeeEEEEEECC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KF-----------------------------DTTYQATIGIDFLSKTMYLED 55 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (207)
.+.++|+++|+.++|||||+.+|+.. .. ..+..+..+++.....+ ..
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~--~~ 82 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--ET 82 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE--cc
Confidence 45699999999999999999999741 10 12223444455444444 44
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---HH---HHHHHHHHHHHHhcCCCCe-EEEEEeCCCCC-
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---SF---LNTSRWIEEVRTERGGDVI-IVLVGNKTDLV- 127 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~- 127 (207)
....+.|+|+||+.+|.......+..+|++++|+|++.+. .+ ....+.+..+... .+| ++|++||+|..
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT 159 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 4468999999999999888888889999999999998642 01 1122222222222 354 78999999943
Q ss_pred -CCCCCCHHH----HHHHHHHh-----CCeEEEEecCCCCChHH
Q 028546 128 -DKRQVSIEE----GDGKAKEF-----GVMFIETSAKAGFNIKP 161 (207)
Q Consensus 128 -~~~~~~~~~----~~~~~~~~-----~~~~~~~s~~~~~~i~~ 161 (207)
+..+..+++ +....... +++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 222222222 23333322 35799999999999864
No 237
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=1.6e-16 Score=121.78 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=94.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc----------ccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-----
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY----------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----- 73 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 73 (207)
.++|+|+|..|+|||||+|+|++..+.... .++.++......+..++..+++.+|||||..+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 589999999999999999999988775432 23334455555666677778999999999432211
Q ss_pred ---------------------ccccccc--cCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 74 ---------------------LIPSYIR--DSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 74 ---------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
.....+. .+|+++|+++.+.. .+... ...+..+.. .+|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK----RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc----cCCEEEEEECCCcCCH
Confidence 0112222 47888888887741 11111 233333332 5899999999998653
Q ss_pred CC--CCHHHHHHHHHHhCCeEEEEecCCC
Q 028546 130 RQ--VSIEEGDGKAKEFGVMFIETSAKAG 156 (207)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (207)
.+ .....+.+.+..+++++|.....+.
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~~ 187 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDEE 187 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence 33 3345566677788999988765443
No 238
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=2.2e-16 Score=126.98 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
.+.++|+++|+.++|||||+++|++... ..+..+..+++.. ...+.....++.++||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHHH
Confidence 4569999999999999999999986311 1122344444443 344443445789999999988
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHh--
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIV-LVGNKTDLVDKRQVS---IEEGDGKAKEF-- 144 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~-- 144 (207)
|.......+..+|++++|+|+.++.. ....+.+..+... ++|.+ +++||+|+.+..+.. ..++..+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 87777777889999999999986422 1222333333322 46765 689999986432211 12233333333
Q ss_pred ---CCeEEEEecCCCC----------ChHHHHHHHHHHcC
Q 028546 145 ---GVMFIETSAKAGF----------NIKPLFRKIAAALP 171 (207)
Q Consensus 145 ---~~~~~~~s~~~~~----------~i~~~~~~l~~~~~ 171 (207)
+++++++|+++|. ++..+++.|.+.+.
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 3579999999875 45667777766543
No 239
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=1.6e-16 Score=116.38 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=95.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccc-ee--eeEEEEEECCeEEEEEEEecCChhhhcccccc-----ccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG-ID--FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-----YIR 80 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~ 80 (207)
+++|+++|.+|+|||||+|++++...........+ .. .....+.... ...+.+||+||.......... .+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 47999999999999999999998665432222111 11 1111111111 237899999996533222222 256
Q ss_pred cCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-----------CHHHHHHHHH----Hh
Q 028546 81 DSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-----------SIEEGDGKAK----EF 144 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-----------~~~~~~~~~~----~~ 144 (207)
++|+++++.+.. +.. ...+++.+... ..|+++|+||+|+....+. ..+.++..+. ..
T Consensus 80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 789998885432 222 23444555443 4789999999998432110 0111111222 11
Q ss_pred C---CeEEEEecC--CCCChHHHHHHHHHHcCCCc
Q 028546 145 G---VMFIETSAK--AGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 145 ~---~~~~~~s~~--~~~~i~~~~~~l~~~~~~~~ 174 (207)
+ .++|.+|+. .+.++..+.+.|+..+.+.+
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 2 368999998 57899999999999887654
No 240
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=8.1e-17 Score=136.66 Aligned_cols=153 Identities=24% Similarity=0.266 Sum_probs=96.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------------CccccccceeeeEEE
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------------TTYQATIGIDFLSKT 50 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~--~-------------------------------~~~~~~~~~~~~~~~ 50 (207)
.+....++|+++|++++|||||+++|+...- . .+..++.+++.....
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 4455679999999999999999999985321 0 011122333333333
Q ss_pred EEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 51 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 51 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
+..++ .++.|+||||+++|.......+..+|++++|+|+..+..-+. .+.+..+.. .+ ..+++|++||+|+.+..
T Consensus 99 ~~~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~-~~-~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 99 FATPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASL-LG-IRHVVLAVNKMDLVDYD 173 (632)
T ss_pred EccCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHH-hC-CCeEEEEEEecccccch
Confidence 43333 578899999998876655556789999999999986432211 111111221 22 35789999999986422
Q ss_pred CCCHH----HHHHHHHHhC---CeEEEEecCCCCChHH
Q 028546 131 QVSIE----EGDGKAKEFG---VMFIETSAKAGFNIKP 161 (207)
Q Consensus 131 ~~~~~----~~~~~~~~~~---~~~~~~s~~~~~~i~~ 161 (207)
+...+ +...+...++ .+++++|+++|.|+.+
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 21122 2222333444 3699999999999874
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=3.1e-16 Score=128.09 Aligned_cols=146 Identities=17% Similarity=0.118 Sum_probs=96.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC------C----------CCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDK------F----------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
.+.++|+++|++++|||||+++|++.. . ..+..+..+++.....+..+ ...+.++|+||+++
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--~~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--CcEEEEEECCCHHH
Confidence 446999999999999999999998521 1 12233444444433344333 35889999999999
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHh--
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEF-- 144 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~-- 144 (207)
|.......+..+|++++|+|+.++..-+ ..+++..+... .+| ++|++||+|+.+..+.. ..++..+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8887777778999999999998643222 23333333322 466 78899999987533221 12333444443
Q ss_pred ---CCeEEEEecCCCCC
Q 028546 145 ---GVMFIETSAKAGFN 158 (207)
Q Consensus 145 ---~~~~~~~s~~~~~~ 158 (207)
+++++++|+.+|.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 45799999998853
No 242
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=2.8e-16 Score=119.90 Aligned_cols=116 Identities=23% Similarity=0.283 Sum_probs=78.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC--CCCc------------------cccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK--FDTT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (207)
-+|+++|++|+|||||+++|+... .... .....++.+......+....+++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997421 1000 00111233333333444445789999999999
Q ss_pred hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
+|.......++.+|++|+|+|+++..... ...++..... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 88887777889999999999998643222 2333333322 25899999999997543
No 243
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.9e-17 Score=111.21 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=117.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
|.=|++++|..++|||||++.|..++..+. ..+.+.......+.+ .+++.+|.+|+..-+..|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh---vPTlHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH---VPTLHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc---CCCcCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 456899999999999999999987776432 222233344444555 789999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----------------CCeEE
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----------------GVMFI 149 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 149 (207)
.+|+-+.+.|...+..++.+.... ...+|+++.+||+|...+. ..++.+....-+ .+++|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 999999999998877776654433 3579999999999986543 333332221111 13589
Q ss_pred EEecCCCCChHHHHHHHHHHc
Q 028546 150 ETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~ 170 (207)
.||...+.+.-+.|.|+.+.+
T Consensus 172 mcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEccCccceeeeehhhhc
Confidence 999999999889999887654
No 244
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=3.9e-16 Score=126.87 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=100.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC------C----------CCCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD------K----------FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
.+.++|+++|+.++|||||+++|.+. . ...+..+..+++... ..+.....++.++||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~--~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAH--VEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeE--EEEcCCCeEEEEEECCCccc
Confidence 34599999999999999999999621 1 112233455555443 33444446889999999988
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHh--
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVSI---EEGDGKAKEF-- 144 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~-- 144 (207)
|.......+..+|++++|+|+.++..-+ ..+.+..+... ++| +++++||+|+.++.+... .++..+...+
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7666655667899999999998642211 12222222222 477 578999999875332111 1222333322
Q ss_pred ---CCeEEEEecC---CCCC-------hHHHHHHHHHHcC
Q 028546 145 ---GVMFIETSAK---AGFN-------IKPLFRKIAAALP 171 (207)
Q Consensus 145 ---~~~~~~~s~~---~~~~-------i~~~~~~l~~~~~ 171 (207)
.++++++|+. +|.| +.++++.|.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2578888875 4555 6788888877654
No 245
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=4.4e-16 Score=128.72 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=80.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc--CCCC----------------C--ccccccceeeeEEEEEECCeEEEEEEEecC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFD----------------T--TYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~--~~~~----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (207)
.+..+|+++|++++|||||.++|+. +... . ......++.+......+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4557999999999999999999973 1110 0 001122333333333343344789999999
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
|+.+|......++..+|++|+|+|+++.-.. ....++..... .++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 9999988778888999999999999864322 22334433332 268999999999974
No 246
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.71 E-value=2.8e-16 Score=116.53 Aligned_cols=158 Identities=21% Similarity=0.308 Sum_probs=98.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-----ccccccccCCE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDSSV 84 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 84 (207)
||+++|+.+|||||+...++.+..+ ++..-..+.++....+...+. +.+.+||+||+..+-. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999999988877654 333334455555555543433 5899999999875433 34667899999
Q ss_pred EEEEEECCChH---HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--C----HHHHHHHHHHhC---CeEEEEe
Q 028546 85 AVIVYDVANRQ---SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--S----IEEGDGKAKEFG---VMFIETS 152 (207)
Q Consensus 85 ~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~----~~~~~~~~~~~~---~~~~~~s 152 (207)
+|||+|+...+ .+..+...++.+.+. ++++.+.|+++|+|+..+... . .+.+...+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999998433 333344444444444 347889999999998644221 1 222333344445 7889999
Q ss_pred cCCCCChHHHHHHHHHHcC
Q 028546 153 AKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 153 ~~~~~~i~~~~~~l~~~~~ 171 (207)
..+. .+-+++..+++.+-
T Consensus 159 I~D~-Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 159 IWDE-SLYEAWSKIVQKLI 176 (232)
T ss_dssp TTST-HHHHHHHHHHHTTS
T ss_pred CcCc-HHHHHHHHHHHHHc
Confidence 9995 77788877777654
No 247
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=2.6e-16 Score=127.80 Aligned_cols=166 Identities=18% Similarity=0.150 Sum_probs=107.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEE---------------EECC-----------
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTM---------------YLED----------- 55 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 55 (207)
.....++|.++|+...|||||+.+|.+-.. ..+..+..+++.-.... ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 445679999999999999999999996433 33333333332221111 0110
Q ss_pred -----eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 56 -----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 56 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
....+.|+|+||+++|.......+..+|++++|+|+.++.......+.+. +....+ -.+++|++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccCHH
Confidence 01368999999999987777777789999999999996311111122222 222222 24689999999987532
Q ss_pred CC--CHHHHHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 131 QV--SIEEGDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 131 ~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
.. ..+++..+... .+.+++++|+.+|.|+++|++.|.+.+..
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 21 12223333222 25689999999999999999999986653
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=7.7e-16 Score=123.59 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=113.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
.=+.++|+...|||||+..+....+.....-..+-++.-..+..+. ....++|+||||++.|..+...-..-+|++|||
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 4588999999999999999998888655455555455444555441 224899999999999999998888889999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC---------CeEEEEecCCCCCh
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG---------VMFIETSAKAGFNI 159 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~i 159 (207)
+|+++.---++ .+.+...+ ..++|++|++||+|..+. ..+........++ ..++++||++|+|+
T Consensus 86 Va~dDGv~pQT-iEAI~hak---~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 86 VAADDGVMPQT-IEAINHAK---AAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred EEccCCcchhH-HHHHHHHH---HCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 99997322122 22222233 337999999999998633 2333333333333 35899999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028546 160 KPLFRKIAAALPGM 173 (207)
Q Consensus 160 ~~~~~~l~~~~~~~ 173 (207)
.+|+..++-...-+
T Consensus 159 ~eLL~~ill~aev~ 172 (509)
T COG0532 159 DELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988766544
No 249
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=2e-16 Score=120.49 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=117.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccccCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS 83 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d 83 (207)
.|.+||.|++||||||+++...+.--...+.++.......+.+.+.. .|.+-|.||.-.- .......+..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~-sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGE-SFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCC-cEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 36789999999999999999888876777888877777777764433 7999999994332 222334467899
Q ss_pred EEEEEEECCChH---HHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE-EEecCCCC
Q 028546 84 VAVIVYDVANRQ---SFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFI-ETSAKAGF 157 (207)
Q Consensus 84 ~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~ 157 (207)
++++|+|++..+ ..+.......++..+.. .++|.+||+||+|+..+.+........+.+..+...+ ++|+.++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998533 23444444444443322 4689999999999766655545555555555554332 39999999
Q ss_pred ChHHHHHHHHHHcCCCc
Q 028546 158 NIKPLFRKIAAALPGME 174 (207)
Q Consensus 158 ~i~~~~~~l~~~~~~~~ 174 (207)
|++++...+.+.+....
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887665
No 250
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=3.2e-16 Score=119.72 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=80.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC--CC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD--KF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (207)
+|+++|++++|||||+++|+.. .. +.+..+..+++.....+.+.+ .++.+|||||..++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 5899999999999999999731 11 122334445555555555555 689999999999888
Q ss_pred cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
..+...+..+|++|+|+|+.+...-.. ...+..+... ++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence 888889999999999999986432222 2333333322 589999999999864
No 251
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.70 E-value=7.4e-16 Score=119.84 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=105.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE---------------------CC-eEEEEEEEecCCh-
Q 028546 12 LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL---------------------ED-RTVRLQLWDTAGQ- 68 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~- 68 (207)
|+++|.|++|||||+++|++..+.....+.++++.......+ ++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999998765444455544444333322 22 3367999999996
Q ss_pred ---hhhcccccc---ccccCCEEEEEEECCC---------------h-HHHHHH----HHH-H-------HHHH------
Q 028546 69 ---ERFRSLIPS---YIRDSSVAVIVYDVAN---------------R-QSFLNT----SRW-I-------EEVR------ 108 (207)
Q Consensus 69 ---~~~~~~~~~---~~~~~d~~ilv~d~~~---------------~-~s~~~~----~~~-~-------~~i~------ 108 (207)
++...+... .++++|++++|+|+.. + ..++.+ ..| + ..+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333 4899999999999973 0 011111 111 0 0000
Q ss_pred ---------------------------Hh---------------------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH
Q 028546 109 ---------------------------TE---------------------RGGDVIIVLVGNKTDLVDKRQVSIEEGDGK 140 (207)
Q Consensus 109 ---------------------------~~---------------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 140 (207)
.. ....+|+++++||+|+.+..+. ...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence 00 1235799999999997533221 1112
Q ss_pred HHHh-CCeEEEEecCCCCChHHHHH-HHHHHcCCCccCcccc
Q 028546 141 AKEF-GVMFIETSAKAGFNIKPLFR-KIAAALPGMETLSSTK 180 (207)
Q Consensus 141 ~~~~-~~~~~~~s~~~~~~i~~~~~-~l~~~~~~~~~~~~~~ 180 (207)
.... ...++++|++.+.+++++.+ .+.+.+++......+.
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~ 278 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD 278 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence 2222 45799999999999999998 6999998765544333
No 252
>PRK13351 elongation factor G; Reviewed
Probab=99.69 E-value=1e-15 Score=131.27 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=83.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCC--------CC----------ccccccceeeeEEEEEECCeEEEEEEEecC
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKF--------DT----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (207)
+...-.+|+|+|+.++|||||+++|+...- .. +.....++......+.+.+ +.+.+||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtP 81 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTP 81 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECC
Confidence 334458999999999999999999984210 00 0112223333333444443 689999999
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
|+.++...+..+++.+|++|+|+|+++.........| ..+... ++|+++++||+|+..
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~---~~p~iiviNK~D~~~ 139 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY---GIPRLIFINKMDRVG 139 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc---CCCEEEEEECCCCCC
Confidence 9999998899999999999999999976655544333 333322 589999999999763
No 253
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=7.4e-17 Score=123.67 Aligned_cols=154 Identities=15% Similarity=0.216 Sum_probs=99.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc------------------cccccceeeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (207)
+|+++|++|+|||||++++++..-... ..+..++......+.+++ +.+.+|||||..++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 589999999999999999974321100 011222222233344444 689999999998888
Q ss_pred cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH-HHHHHHHHhCCeEE--
Q 028546 73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE-EGDGKAKEFGVMFI-- 149 (207)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~-- 149 (207)
..+..++..+|++++|+|++..........| ..+.. .++|.++++||+|.... ... ....+...++.+++
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence 8888889999999999999875444333222 22332 25899999999998543 222 23333344555444
Q ss_pred EEecCCCCChHHHHHHHHHHcCCC
Q 028546 150 ETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
.+...++.++..+.+.+.......
T Consensus 152 ~ip~~~~~~~~~~vd~~~~~~~~~ 175 (268)
T cd04170 152 QLPIGEGDDFKGVVDLLTEKAYIY 175 (268)
T ss_pred EecccCCCceeEEEEcccCEEEEc
Confidence 445677777777766665554433
No 254
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.5e-15 Score=113.72 Aligned_cols=156 Identities=22% Similarity=0.219 Sum_probs=117.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR 80 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~ 80 (207)
..-+++++|.|++|||||++.|++........+.++.......+.+++ .++++.|+||.-.- .......++
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 347899999999999999999999988777778888888888888888 67999999983321 234566789
Q ss_pred cCCEEEEEEECCChHH-HHHHHHHHHHHHHh-------------------------------------------------
Q 028546 81 DSSVAVIVYDVANRQS-FLNTSRWIEEVRTE------------------------------------------------- 110 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~------------------------------------------------- 110 (207)
+||++++|+|+..... .+.+.+.+....-+
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999985443 44444444332110
Q ss_pred ----------------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 111 ----------------RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 111 ----------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
.-..+|.++|+||+|+.. .++...+.+.. ..+++|+..+.|++++.+.|.+.+.-
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 112688999999999854 22333333333 89999999999999999999998753
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=1.4e-15 Score=102.09 Aligned_cols=106 Identities=21% Similarity=0.278 Sum_probs=71.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhh---------ccccccccc
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR 80 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 80 (207)
+|+|+|.+|+|||||+|+|++... .....+..+.......+.+++. .+.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998644 2333344444544455566764 5679999995321 112233348
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK 123 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 123 (207)
.+|++++|+|++++.. +.....+..+. ...|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999876322 22333334442 36999999998
No 256
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=4.4e-15 Score=108.75 Aligned_cols=160 Identities=11% Similarity=0.129 Sum_probs=102.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcc--ccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-------c----cc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------L----IP 76 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~----~~ 76 (207)
++|+++|.+|+|||||+|++++....... .+..+.........+.+ ..+.++||||..+... . ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999988654332 23334444444444555 4799999999654321 1 11
Q ss_pred cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCCCCC------HHHHHHHHHHhCCeE
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQVS------IEEGDGKAKEFGVMF 148 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~ 148 (207)
....+.|++|||+++.+. + ......++.+...++. -.++++++|+.|......+. ....+.+....+-.+
T Consensus 79 ~~~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 224678999999999862 2 1223334444444331 24688999999965543211 134455555556566
Q ss_pred EEEec-----CCCCChHHHHHHHHHHcCCC
Q 028546 149 IETSA-----KAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 149 ~~~s~-----~~~~~i~~~~~~l~~~~~~~ 173 (207)
+..+. ..+.+++++++.+.+++.+.
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 55554 45678999999999888763
No 257
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=2.4e-15 Score=124.39 Aligned_cols=118 Identities=22% Similarity=0.269 Sum_probs=81.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc--CCCCC------------------ccccccceeeeEEEEEECCeEEEEEEEec
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMY--DKFDT------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (207)
..+..+|+|+|++++|||||+++|+. +.... ......++.+......++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 34567999999999999999999862 11100 00112234444444445555579999999
Q ss_pred CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
||+.+|.......+..+|++|+|+|+++.-. .....++..... .++|+++++||+|+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 9999888877778899999999999986421 112334443332 258999999999974
No 258
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=1.9e-15 Score=119.34 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=121.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC---------------CCCccccccceeeeEEEEEE---CCeEEEEEEEecCChh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDK---------------FDTTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQE 69 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 69 (207)
+--+..++.+-..|||||..+++... ..-++.++.++......+.+ ++..|.++++||||+-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 33678999999999999999997221 12234455555544444433 4577999999999999
Q ss_pred hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q 028546 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV--- 146 (207)
Q Consensus 70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 146 (207)
+|...+...+..|.+.++|+|++-+-.-+++...|..+.. +.-++-|+||+||..+.. .....+..+-.|+
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~~ 161 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDAS 161 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCcc
Confidence 9999999999999999999999976666777777777754 466899999999964432 1122334444565
Q ss_pred eEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546 147 MFIETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
..+.+||++|.|++++++.+++.++.-
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred hheeEecccCCCHHHHHHHHHhhCCCC
Confidence 589999999999999999999998743
No 259
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=6.1e-15 Score=126.31 Aligned_cols=117 Identities=19% Similarity=0.224 Sum_probs=84.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC-----C-------------CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-----F-------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
..+-.+|+++|++++|||||+++|+... . ..+..+..+++.....+.+++ .++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 3445789999999999999999997421 0 111244556666666666655 5899999999
Q ss_pred hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
+.++...+...+..+|++|+|+|+.++-..... ..+..+... ++|+++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~---~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY---GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc---CCCEEEEEECCCCCC
Confidence 998888888889999999999999865332222 222333322 588999999999863
No 260
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.4e-15 Score=119.09 Aligned_cols=157 Identities=20% Similarity=0.182 Sum_probs=114.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
..=|.++|+...|||||+.+|....+......+.+-++--..+....+ -.++|.||||+.-|..|...-..-+|++++|
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 355889999999999999999988875443444444444444445543 5899999999999999999988999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC---------CeEEEEecCCCCCh
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG---------VMFIETSAKAGFNI 159 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~i 159 (207)
+.+.|+---++ . +.+......++|++|.+||+|.. +...+...+....++ ..++++|+++|.|+
T Consensus 232 VAadDGVmpQT-~---EaIkhAk~A~VpiVvAinKiDkp---~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 232 VAADDGVMPQT-L---EAIKHAKSANVPIVVAINKIDKP---GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEccCCccHhH-H---HHHHHHHhcCCCEEEEEeccCCC---CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99997322122 2 22333334479999999999975 334444444444443 35899999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028546 160 KPLFRKIAAALPGM 173 (207)
Q Consensus 160 ~~~~~~l~~~~~~~ 173 (207)
+.|.+.+.-+..-+
T Consensus 305 ~~L~eaill~Ae~m 318 (683)
T KOG1145|consen 305 DLLEEAILLLAEVM 318 (683)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888765544
No 261
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.7e-15 Score=120.10 Aligned_cols=163 Identities=21% Similarity=0.214 Sum_probs=112.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hcccc--------ccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLI--------PSY 78 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~--------~~~ 78 (207)
.++|+++|+|++|||||+|+|..... .....++++.|.....++++| +++.+.||+|..+ -.... ...
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 48999999999999999999998776 466788999999888998888 6888999999665 11111 223
Q ss_pred cccCCEEEEEEECCChH--HHHHHHHHHHHHHHhc------CCCCeEEEEEeCCCCCCC-CCCCHHHHHHHHHH--hCC-
Q 028546 79 IRDSSVAVIVYDVANRQ--SFLNTSRWIEEVRTER------GGDVIIVLVGNKTDLVDK-RQVSIEEGDGKAKE--FGV- 146 (207)
Q Consensus 79 ~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~------~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~--~~~- 146 (207)
+..+|++++|+|+...+ +-..+.+.++...... ....++++++||.|+..+ .+..-....+.... -.+
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 67899999999995322 2222334444332221 234789999999998655 12111111111111 123
Q ss_pred eEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546 147 MFIETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
.+.++|+.+++|++.+...|...+...
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 356699999999999999999887644
No 262
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.63 E-value=2e-14 Score=115.08 Aligned_cols=166 Identities=19% Similarity=0.250 Sum_probs=106.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE---------------------C-CeEEEEEEEecCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL---------------------E-DRTVRLQLWDTAG 67 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 67 (207)
++|+++|.|++|||||+++|.+..+.....+..+++.......+ + .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988876544455555555444332 1 1235789999999
Q ss_pred hh----hhccccccc---cccCCEEEEEEECCC---------------h-HHHHHH----HHH--------HHHH-----
Q 028546 68 QE----RFRSLIPSY---IRDSSVAVIVYDVAN---------------R-QSFLNT----SRW--------IEEV----- 107 (207)
Q Consensus 68 ~~----~~~~~~~~~---~~~~d~~ilv~d~~~---------------~-~s~~~~----~~~--------~~~i----- 107 (207)
.- ....+...+ ++++|++++|+|+.. + ..++.+ ..| +..+
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 42 222232333 889999999999961 0 011110 000 0000
Q ss_pred ---------------------------HH-h---------------------cCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028546 108 ---------------------------RT-E---------------------RGGDVIIVLVGNKTDLVDKRQVSIEEGD 138 (207)
Q Consensus 108 ---------------------------~~-~---------------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 138 (207)
.. . ....+|+++|+||.|...... ...
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~----~l~ 237 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE----NIE 237 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH----HHH
Confidence 00 0 113589999999999743222 112
Q ss_pred HHHHHhCCeEEEEecCCCCChHH-HHHHHHHHcCCCccCccc
Q 028546 139 GKAKEFGVMFIETSAKAGFNIKP-LFRKIAAALPGMETLSST 179 (207)
Q Consensus 139 ~~~~~~~~~~~~~s~~~~~~i~~-~~~~l~~~~~~~~~~~~~ 179 (207)
.+...-+..++++||..+.++.+ +.+.+.+.+++...-++.
T Consensus 238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~ 279 (396)
T PRK09602 238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEIL 279 (396)
T ss_pred HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcc
Confidence 22222345799999999999999 889999988877655544
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=9.6e-15 Score=125.15 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=85.5
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCC--C----------------CCccccccceeeeEEEEEECCeEEEEEEEec
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDK--F----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (207)
.+..+-.+|+|+|++++|||||+++|+... . ..+..+..+++.....+.+.+ +++.+|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDT 82 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDT 82 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEEC
Confidence 344444699999999999999999997311 1 011224445555555666655 68999999
Q ss_pred CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
||+.++...+...+..+|++|+|+|+.+....+.. .++..+... ++|+++++||+|+...
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY---EVPRIAFVNKMDKTGA 142 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc---CCCEEEEEECCCCCCC
Confidence 99998888888889999999999999875444332 222333322 5899999999998653
No 264
>PRK00007 elongation factor G; Reviewed
Probab=99.62 E-value=4.9e-14 Score=120.79 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=82.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc--CCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMY--DKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
..+-.+|+++|++++|||||+++|+. +.. ..+..+..+++.....+.+.+ ..+.++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 33446999999999999999999973 111 011234555555556666655 5899999999
Q ss_pred hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
+.++.......+..+|++|+|+|+...-..++.. .+..+... ++|+++++||+|+.
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~---~~p~iv~vNK~D~~ 140 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY---KVPRIAFVNKMDRT 140 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc---CCCEEEEEECCCCC
Confidence 9888777777788999999999998653333322 22223322 57899999999985
No 265
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=3.7e-15 Score=110.63 Aligned_cols=163 Identities=20% Similarity=0.327 Sum_probs=108.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEE-EECCeEEEEEEEecCChhh-------hcccccc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQER-------FRSLIPS 77 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 77 (207)
.-.+++|+++|..|+|||||+|+|+++...+...-..+.+...... .+++ -.+.+||+||-.+ |+.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 3456999999999999999999999766644433233333222221 2233 2799999999444 7777888
Q ss_pred ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC--------CCCH---HHHHHHHHH---
Q 028546 78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR--------QVSI---EEGDGKAKE--- 143 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~--------~~~~---~~~~~~~~~--- 143 (207)
++...|.++++.++.++. +..-..++..+..... +.++++++|+.|...+- .... +.+++.+..
T Consensus 114 ~l~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRA-LGTDEDFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCcc-ccCCHHHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999998753 2222233333433332 47899999999976441 1111 111111111
Q ss_pred -h--CCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 144 -F--GVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 144 -~--~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
. =-+++.++...+.|++++...++..+..
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 1 1368888999999999999999999873
No 266
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.61 E-value=1.4e-15 Score=108.32 Aligned_cols=119 Identities=18% Similarity=0.343 Sum_probs=71.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE-CCeEEEEEEEecCChhhhcccccc---ccccCC
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPS---YIRDSS 83 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d 83 (207)
++-.|+++|+.|||||+|+.+|..+....+..+. ... ....+ ......+.++|+||+.+.+..... +...+.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n---~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENN---IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEE---EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCC---ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 3457899999999999999999999765443333 111 11112 122237899999999998875544 478899
Q ss_pred EEEEEEECCC-hHHHHHHHHH-HHHHHHh--cCCCCeEEEEEeCCCCCCCC
Q 028546 84 VAVIVYDVAN-RQSFLNTSRW-IEEVRTE--RGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 84 ~~ilv~d~~~-~~s~~~~~~~-~~~i~~~--~~~~~p~ivv~nK~D~~~~~ 130 (207)
++|||+|.+. ...+..+.++ +..+... ....+|++++.||.|+..+.
T Consensus 78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 9999999974 3344444333 3333222 23679999999999986543
No 267
>PRK09866 hypothetical protein; Provisional
Probab=99.60 E-value=7.4e-14 Score=115.20 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=73.6
Q ss_pred EEEEEEecCChhhh-----ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERF-----RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV 132 (207)
Q Consensus 58 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (207)
.++.|+||||.+.. .......+..+|+++||+|++...+... ...+..+.. .++..|+++|+||+|+.+..+-
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk-~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA-VGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh-cCCCCCEEEEEEcccCCCcccc
Confidence 36899999997542 2233446899999999999986433222 122333332 2223699999999998643332
Q ss_pred CHHHHHHHHHHh-------CCeEEEEecCCCCChHHHHHHHHHH
Q 028546 133 SIEEGDGKAKEF-------GVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 133 ~~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
..+.+..+.... ...+|++||+.|.|++.+++.|...
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 344444443211 2369999999999999999999884
No 268
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.59 E-value=1.1e-14 Score=114.84 Aligned_cols=161 Identities=18% Similarity=0.278 Sum_probs=115.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC--------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF--------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 75 (207)
-+|+++.+...|||||++.|+.+.- +....+..++.+..+...+....+++.++||||+.+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 5899999999999999999984322 11122455667777766666666899999999999999999
Q ss_pred ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHH-------HHHhCCe
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGK-------AKEFGVM 147 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~-------~~~~~~~ 147 (207)
...+.-+|++++++|+.+.. +...+..+...... ..+.|||+||+|..+++.-. .++.-.+ -++++++
T Consensus 86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 99999999999999999732 22222222333222 46678999999986654321 1111111 2245789
Q ss_pred EEEEecCCCC----------ChHHHHHHHHHHcCCCc
Q 028546 148 FIETSAKAGF----------NIKPLFRKIAAALPGME 174 (207)
Q Consensus 148 ~~~~s~~~~~----------~i~~~~~~l~~~~~~~~ 174 (207)
+++.|+..|. ++..+|+.|+++++.-.
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 9999999875 58999999999998654
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.58 E-value=5.8e-14 Score=120.29 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=76.3
Q ss_pred EcCCCCCHHHHHHHHhcCCC------------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccc
Q 028546 15 LGDQSVGKTSIITRFMYDKF------------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 76 (207)
Q Consensus 15 ~G~~~sGKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 76 (207)
+|++++|||||+++|+...- ..+..++.++......+.+.+ +.+.+|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 69999999999999953211 011123444544445555555 6899999999988888888
Q ss_pred cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
.++..+|++++|+|++..........| ..+.. .++|+++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999876554443322 22322 258999999999975
No 270
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.56 E-value=8.2e-14 Score=106.61 Aligned_cols=148 Identities=24% Similarity=0.333 Sum_probs=108.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCccccccceeeeEEEEEEC
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF---------------------------------DTTYQATIGIDFLSKTMYLE 54 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (207)
..++.+-+|...-||||||-+|+.+.- ..++..+.++++..+.| .
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF--s 82 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF--S 82 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--c
Confidence 358999999999999999999983321 11122344455555554 4
Q ss_pred CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH
Q 028546 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI 134 (207)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~ 134 (207)
...-+|.+-||||+++|....-.-...||++|+++|+- .....+.+....+....+ -..++|.+||+||.+..+-.+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 44468999999999999888877778899999999996 445555555555655554 367999999999998766555
Q ss_pred HHH----HHHHHHhCC---eEEEEecCCCCChH
Q 028546 135 EEG----DGKAKEFGV---MFIETSAKAGFNIK 160 (207)
Q Consensus 135 ~~~----~~~~~~~~~---~~~~~s~~~~~~i~ 160 (207)
+.+ ..++.++++ .++++||+.|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 444 455666664 68999999999864
No 271
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2e-13 Score=97.63 Aligned_cols=155 Identities=23% Similarity=0.301 Sum_probs=102.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc---cCCEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSVAV 86 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i 86 (207)
-.|+++|+.+||||+|+-+|..+.+..+. +.+..........+. .++++|.||+.+.+.....++. .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 56899999999999999999988654332 222222333333332 4899999999999988877777 799999
Q ss_pred EEEECCC-hHHHHH-HHHHHHHHHHh--cCCCCeEEEEEeCCCCCCCCCCC--HHHH----------HH-----------
Q 028546 87 IVYDVAN-RQSFLN-TSRWIEEVRTE--RGGDVIIVLVGNKTDLVDKRQVS--IEEG----------DG----------- 139 (207)
Q Consensus 87 lv~d~~~-~~s~~~-~~~~~~~i~~~--~~~~~p~ivv~nK~D~~~~~~~~--~~~~----------~~----------- 139 (207)
||+|... .....+ ...+|..+... ....+|++++-||.|+.-+.... .+.. +.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999963 122233 33344444444 24578899999999986432110 0000 00
Q ss_pred ---------------HHHHhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546 140 ---------------KAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 140 ---------------~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
........|.++|++++ +++++.+||.+.+
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00001245889999999 9999999998753
No 272
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.54 E-value=3e-13 Score=102.52 Aligned_cols=165 Identities=21% Similarity=0.333 Sum_probs=121.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEE--EECCeEEEEEEEecCChhhhccccccccccC----C
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTM--YLEDRTVRLQLWDTAGQERFRSLIPSYIRDS----S 83 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d 83 (207)
-+|+|+|..|+||||||.+|-+.. ...+..+..+..-.+ ..++...++.+|-..|...+..+....+... .
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 579999999999999999998876 334455544433332 2233345788888888777776666554433 4
Q ss_pred EEEEEEECCChHHHHH-HHHHHHHHHHh----------------------------------------------------
Q 028546 84 VAVIVYDVANRQSFLN-TSRWIEEVRTE---------------------------------------------------- 110 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~-~~~~~~~i~~~---------------------------------------------------- 110 (207)
++||+.|+++++++-. +++|...+++.
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 8899999999966544 78888776553
Q ss_pred ---------cCCCCeEEEEEeCCCCCCC-------C----CCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546 111 ---------RGGDVIIVLVGNKTDLVDK-------R----QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 111 ---------~~~~~p~ivv~nK~D~~~~-------~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
.+-.+|++||.+|+|...- + ......+++++..+|...|++|.++..|++-+..+|.+..
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 1236889999999997421 1 1223456788888999999999999999999999999998
Q ss_pred CCCccCc
Q 028546 171 PGMETLS 177 (207)
Q Consensus 171 ~~~~~~~ 177 (207)
....-..
T Consensus 290 yG~~ftt 296 (473)
T KOG3905|consen 290 YGFPFTT 296 (473)
T ss_pred cCcccCC
Confidence 7764433
No 273
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.7e-13 Score=110.83 Aligned_cols=154 Identities=29% Similarity=0.388 Sum_probs=105.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC--------------------C--C-------CCccccccceeeeEEEEEECCeEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD--------------------K--F-------DTTYQATIGIDFLSKTMYLEDRTV 58 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~--------------------~--~-------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (207)
..++.+|+|+..+|||||+.+++.. + | .....+..++.....+..++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 3589999999999999999998721 0 1 111123334444455555556667
Q ss_pred EEEEEecCChhhhccccccccccCCEEEEEEECCCh---HHHHH--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028546 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR---QSFLN--TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS 133 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~ 133 (207)
.++++|+||+.+|-.....-+..+|++|||+|++.. ..|+. ..+.+..+.+..+ -...+|++||+|+.+..+-.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHHH
Confidence 899999999888888777778899999999999852 12221 2223333443444 35589999999999887766
Q ss_pred HHHHHHHHHHh----------CCeEEEEecCCCCChHHH
Q 028546 134 IEEGDGKAKEF----------GVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 134 ~~~~~~~~~~~----------~~~~~~~s~~~~~~i~~~ 162 (207)
++++......+ .+.|++||+..|+|+-..
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 66665443322 347999999999996544
No 274
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.51 E-value=6.6e-13 Score=101.85 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=75.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------ccc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPS 77 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~ 77 (207)
....++|+++|.+|+||||++|++++....... ....+...........+ .++.++||||..+.... ...
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 456799999999999999999999988753221 12222222222333344 58999999996643221 111
Q ss_pred cc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCCCCC
Q 028546 78 YI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQVS 133 (207)
Q Consensus 78 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~~~~~ 133 (207)
++ ...|+++||..++.....+.-...++.+...++. -.+++|++|+.|..++....
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 11 2689999996654211111112233334433331 24589999999977554444
No 275
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.50 E-value=6.6e-13 Score=100.21 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=74.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---c-------c
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---L-------I 75 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~ 75 (207)
..+++|+|+|.+|+|||||+|++++....... ....+..........++ .++.+|||||...... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 45699999999999999999999998753322 22233333333333444 5789999999654311 0 1
Q ss_pred ccccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCCC
Q 028546 76 PSYIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 76 ~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~~~ 131 (207)
..++. ..|+++||..++....-..-...++.+...++. -.++++|+||+|...+..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 22332 578888887665421111112344444443331 146999999999865443
No 276
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.50 E-value=8.4e-13 Score=115.70 Aligned_cols=144 Identities=23% Similarity=0.251 Sum_probs=96.5
Q ss_pred CHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE----------------EEEEEEecCChhhhccccccccccCCE
Q 028546 21 GKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT----------------VRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 21 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+||||+.++.+..+......+.|.++--..+..+... ..+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 5999999999888865545555444443334333210 138999999999998877777888999
Q ss_pred EEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC----------------HHHHH----HH-
Q 028546 85 AVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS----------------IEEGD----GK- 140 (207)
Q Consensus 85 ~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~- 140 (207)
+++|+|+++ +++++.+. .+... ++|+++++||+|+....... ..+.. ..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~~---~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQY---KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHHc---CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999986 34444332 22222 58999999999986432210 00000 00
Q ss_pred --HHH-------------h--CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 141 --AKE-------------F--GVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 141 --~~~-------------~--~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
... + ..+++++||.+|+|+++++.+|..+.+
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 011 1 347999999999999999998876544
No 277
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=1.1e-13 Score=119.12 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=78.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC---------------CCC-Cccccccceeee--EEEEEECCeEEEEEEEecCChhh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD---------------KFD-TTYQATIGIDFL--SKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~---------------~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
-.+|+++|+.++|||||+++|+.. .+. .+..+..++... .....+++..+.+.+|||||+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 479999999999999999999742 111 111122222221 22223455668999999999999
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
|.......+..+|++|+|+|+.+....+...-| ..+.. .+.|+++++||+|..
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence 888888889999999999999864322222222 22222 246788999999975
No 278
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.49 E-value=1.8e-13 Score=89.62 Aligned_cols=137 Identities=21% Similarity=0.291 Sum_probs=97.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----hhhhccccccccccCCEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i 86 (207)
||+++|..|+|||||.+.+.+... -+..+..++ +++. -.+|||| +..+.+.+......+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999998764 222333332 2221 2459998 3344444555667899999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 165 (207)
+|-+++++++.-. ..+.... ..|+|=+++|+|+.++.+ ....+.+..+-|. ++|.+|+.++.|++++++.
T Consensus 70 ~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCC-----ccccccc--ccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999998754211 1111111 355999999999976444 4556777777787 7999999999999999999
Q ss_pred HHHH
Q 028546 166 IAAA 169 (207)
Q Consensus 166 l~~~ 169 (207)
|...
T Consensus 141 L~~~ 144 (148)
T COG4917 141 LASL 144 (148)
T ss_pred HHhh
Confidence 8754
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.48 E-value=1.1e-12 Score=96.08 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=66.6
Q ss_pred EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028546 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG 137 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 137 (207)
....++++.|..-...... . -+|.+|.|+|+.+.+.... .+..++. ..=++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 4677788888432222221 1 2688999999987555321 1112221 11289999999975433334444
Q ss_pred HHHHHH--hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 138 DGKAKE--FGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 138 ~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
....+. .+.+++++|+++|.|+++++++|.+.+.
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444444 3568999999999999999999998764
No 280
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.48 E-value=3.8e-12 Score=103.51 Aligned_cols=168 Identities=21% Similarity=0.347 Sum_probs=121.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC--CeEEEEEEEecCChhhhcccccccccc--
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRD-- 81 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 81 (207)
.+..-.|+|+|..++||||||.+|.+.. .+.++.+.++....+.-+ +...++.+|-..|...+..++...+..
T Consensus 22 ~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 22 LPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred CCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 3456799999999999999999987653 334555665555443322 223478999998877777777666553
Q ss_pred --CCEEEEEEECCChHHHHH-HHHHHHHHHHh------------------------------------------------
Q 028546 82 --SSVAVIVYDVANRQSFLN-TSRWIEEVRTE------------------------------------------------ 110 (207)
Q Consensus 82 --~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~------------------------------------------------ 110 (207)
--++|+|.|.+.|+.+-. +..|+..++..
T Consensus 99 l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~ 178 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD 178 (472)
T ss_pred ccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence 248899999999987654 67777665442
Q ss_pred --------------cCCCCeEEEEEeCCCCCCCC-------C----CCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 111 --------------RGGDVIIVLVGNKTDLVDKR-------Q----VSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 111 --------------~~~~~p~ivv~nK~D~~~~~-------~----~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
.+-.+|++||.+|.|..+.. + .....++.++..+|+.+|++|.+...+++-++.+
T Consensus 179 ~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~y 258 (472)
T PF05783_consen 179 DESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKY 258 (472)
T ss_pred cccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHH
Confidence 00147999999999964311 1 2234457778889999999999999999999999
Q ss_pred HHHHcCCCccC
Q 028546 166 IAAALPGMETL 176 (207)
Q Consensus 166 l~~~~~~~~~~ 176 (207)
|.+.+....-.
T Consensus 259 i~h~l~~~~f~ 269 (472)
T PF05783_consen 259 ILHRLYGFPFK 269 (472)
T ss_pred HHHHhccCCCC
Confidence 99998766543
No 281
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.48 E-value=2.4e-13 Score=100.67 Aligned_cols=162 Identities=12% Similarity=0.109 Sum_probs=96.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccc--cccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------c----c
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------I----P 76 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~----~ 76 (207)
++|+++|..|+||||++|.+++........ ...+..+......+++ ..+.|+||||..+.... + .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999888754432 2233344444456677 57899999994332111 1 1
Q ss_pred cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCCCCC-------HHHHHHHHHHhCCe
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQVS-------IEEGDGKAKEFGVM 147 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 147 (207)
....+.|++|||+.+.+... .....+..+...++. -..++||++..|...+..+. ......+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~t~--~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTE--EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SH--HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcchH--HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 12457899999999984221 122233333333331 13488888988865554421 12234455556777
Q ss_pred EEEEecC------CCCChHHHHHHHHHHcCCCcc
Q 028546 148 FIETSAK------AGFNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 148 ~~~~s~~------~~~~i~~~~~~l~~~~~~~~~ 175 (207)
+...+.. ....+.++++.+-+++.+...
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 8777776 334688888888888776653
No 282
>PTZ00258 GTP-binding protein; Provisional
Probab=99.48 E-value=1.2e-12 Score=104.06 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=63.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE---------------EEEEEEecCChhh---
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER--- 70 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~--- 70 (207)
-++|.++|.|++|||||+|+|.+........+.++++.....+.+.+.. .++.++|+||...
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 3799999999999999999999888766666888877777766655322 2589999999542
Q ss_pred ----hccccccccccCCEEEEEEECC
Q 028546 71 ----FRSLIPSYIRDSSVAVIVYDVA 92 (207)
Q Consensus 71 ----~~~~~~~~~~~~d~~ilv~d~~ 92 (207)
........++++|++++|+|+.
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112233468899999999983
No 283
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.48 E-value=1.8e-13 Score=103.27 Aligned_cols=99 Identities=22% Similarity=0.273 Sum_probs=79.8
Q ss_pred hhhccccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe
Q 028546 69 ERFRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM 147 (207)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (207)
+++..+.+.++.++|++++|+|+.++. +++.+.+|+..+.. .++|+++|+||+|+.++.+...+....+ ..++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 567788888999999999999999877 89999999986654 3689999999999976544433334433 357889
Q ss_pred EEEEecCCCCChHHHHHHHHHHcC
Q 028546 148 FIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 148 ~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
++++|+++|.|++++|+.+...+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~~~~~ 123 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQNRIS 123 (245)
T ss_pred EEEEecCCchhHHHHHhhhcCCEE
Confidence 999999999999999999876443
No 284
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.48 E-value=6.1e-13 Score=114.72 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=76.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC--C--------------CccccccceeeeEEEE--EECCeEEEEEEEecCChhhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF--D--------------TTYQATIGIDFLSKTM--YLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~ 71 (207)
.+|+++|+.++|||||+.+|+...- . .+..+..+++.....+ ..++..+.+.++||||+.+|
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 5799999999999999999974211 0 0111222222222222 22444578999999999999
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
.......+..+|++|+|+|+..+-..+...-|.. .... +.|+++++||+|..
T Consensus 101 ~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 101 GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc---CCCeEEEEECchhh
Confidence 8888888999999999999986533333222222 2222 36789999999975
No 285
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.45 E-value=3.8e-12 Score=99.62 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=79.9
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCCh----------HHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCC
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR----------QSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTD 125 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D 125 (207)
.+.+.+||++|+...+..|..++.+++++|||+|+++. ..+......+..+... .-.++|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 36899999999999999999999999999999999973 3444444444444332 225799999999999
Q ss_pred CCCCC----------------CCCHHHHHHHHHH----------hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 126 LVDKR----------------QVSIEEGDGKAKE----------FGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 126 ~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
+..+. ....+.+..+... ..+-...++|.+..+++.+|+.+.+.+.
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence 64321 1122333222221 1233567788888888888888887764
No 286
>PRK13768 GTPase; Provisional
Probab=99.45 E-value=9.6e-13 Score=99.86 Aligned_cols=116 Identities=23% Similarity=0.211 Sum_probs=72.4
Q ss_pred EEEEEecCChhhhc---cccccccc---c--CCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 59 RLQLWDTAGQERFR---SLIPSYIR---D--SSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 59 ~~~i~D~~G~~~~~---~~~~~~~~---~--~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
.+.+||+||+.+.. ..+..+++ . ++++++|+|+........ ...++.........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 68999999976633 33322322 2 899999999965332222 112211111111126899999999998755
Q ss_pred CCCCH--HHHH------------------------HHHHHhC--CeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546 130 RQVSI--EEGD------------------------GKAKEFG--VMFIETSAKAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 130 ~~~~~--~~~~------------------------~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~~~~~~ 174 (207)
.+... .... ...+..+ .+++++|+.++.|++++.++|.+.+..-+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~ 250 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE 250 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence 33211 0000 1122334 57899999999999999999999887544
No 287
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.43 E-value=1.7e-12 Score=101.33 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=68.1
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CH
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SI 134 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 134 (207)
.+.+.|+||+|....... ....+|.++++.+...++.+..++.- +.+ ..-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hhh-----hhheEEeehhcccchhHHHHHH
Confidence 468999999996532222 46789999999875555555444321 111 113899999998643321 11
Q ss_pred HHHHHHHHH-------hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 135 EEGDGKAKE-------FGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 135 ~~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
.+....... +..+++.+|+.++.|++++++.|.+++.
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 122222221 2368999999999999999999999865
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.42 E-value=9.7e-13 Score=114.86 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=80.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEEC--------------CeE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLE--------------DRT 57 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------------~~~ 57 (207)
+-.+|+|+|+.++|||||+++|+...- ..+..+..++......+.+. +..
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 347999999999999999999974321 11112233333222223221 235
Q ss_pred EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
+.++++||||+.+|.......+..+|++|+|+|+.++-......-|.. +... ++|+++++||+|..
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~~---~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE---RIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHHC---CCCEEEEEECCccc
Confidence 688999999999999988888899999999999997544343333333 3222 58999999999975
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=99.42 E-value=9.2e-13 Score=114.81 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=79.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEEC--------CeEEEEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLE--------DRTVRLQLW 63 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~ 63 (207)
+-.+|+++|+.++|||||+++|+...- ..+..+..+++.....+.+. +..+.+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 346999999999999999999985211 11112222333222233333 224679999
Q ss_pred ecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 64 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
||||+.+|.......+..+|++|+|+|+.++-..... ..+..+... ++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc---CCCEEEEEEChhhh
Confidence 9999999988888889999999999999875333322 223333322 58999999999985
No 290
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.42 E-value=1.1e-11 Score=97.62 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=62.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE---------------EEEEEEecCChhhh---
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERF--- 71 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~--- 71 (207)
++|.++|.|++|||||+|++++........+.++++.....+.+.+.. .++.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999988655556777777776666665521 25899999995321
Q ss_pred ----ccccccccccCCEEEEEEECC
Q 028546 72 ----RSLIPSYIRDSSVAVIVYDVA 92 (207)
Q Consensus 72 ----~~~~~~~~~~~d~~ilv~d~~ 92 (207)
.......++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112233468999999999984
No 291
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.42 E-value=1e-12 Score=104.78 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=117.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccc-------
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY------- 78 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~------- 78 (207)
.+..-.++++|-|++|||||++.+........+.++++.......+.+.- ..++++||||.-+....-...
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHH
Confidence 45567899999999999999999998888777677777666666654443 689999999954322111111
Q ss_pred --cccCCEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH---HHHHHHhCCeEEEE
Q 028546 79 --IRDSSVAVIVYDVAN--RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG---DGKAKEFGVMFIET 151 (207)
Q Consensus 79 --~~~~d~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~ 151 (207)
..--.+|+|+.|++. +.+...+..+|..|...+. +.|+|+|+||+|+.....+..+.. ......-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 111247888999874 6688888999999988887 689999999999987777665443 33333445899999
Q ss_pred ecCCCCChHHHHHHHHHH
Q 028546 152 SAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~ 169 (207)
|..+.+|+-++-...-+.
T Consensus 322 S~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEA 339 (620)
T ss_pred cccchhceeeHHHHHHHH
Confidence 999999987765544443
No 292
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1e-11 Score=95.09 Aligned_cols=166 Identities=22% Similarity=0.237 Sum_probs=102.5
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhc-------CCCCCccccccceeeeEEEEEE-------CCeEEEEEEEecC
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMY-------DKFDTTYQATIGIDFLSKTMYL-------EDRTVRLQLWDTA 66 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~-------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~ 66 (207)
|.+++. .+++.++|+..||||||..++-. +.-+++..+..+.+.-...+.+ .+...+++++|||
T Consensus 1 m~~~p~--n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCP 78 (522)
T KOG0461|consen 1 MTSPPS--NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCP 78 (522)
T ss_pred CCCCCc--eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCC
Confidence 444444 39999999999999999999852 2223333444444544444433 2345789999999
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHH-HHH-
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDG-KAK- 142 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~-~~~- 142 (207)
|+...-..+.....-.|..++|+|+..+-.-+...-++ +.+.. ....+||+||+|...+.... .+.... ..+
T Consensus 79 GHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 79 GHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred CcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 98665554444445568899999998533222221111 11121 23368889999976543221 111111 111
Q ss_pred --Hh----CCeEEEEecCCC----CChHHHHHHHHHHcCC
Q 028546 143 --EF----GVMFIETSAKAG----FNIKPLFRKIAAALPG 172 (207)
Q Consensus 143 --~~----~~~~~~~s~~~~----~~i~~~~~~l~~~~~~ 172 (207)
.. +.+++++|+..| +++.++.+.|.+.+-+
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 11 368999999999 7888888888877653
No 293
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.40 E-value=1.5e-11 Score=97.15 Aligned_cols=120 Identities=15% Similarity=0.203 Sum_probs=81.4
Q ss_pred EEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCCh----------HHHHHHHHHHHHHHHh-cCCCCeEE
Q 028546 50 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR----------QSFLNTSRWIEEVRTE-RGGDVIIV 118 (207)
Q Consensus 50 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~i 118 (207)
.+.+++ ..+.+||++|+...+..|..++.+++++|||+|+++. ..+......+..+... .-.++|++
T Consensus 178 ~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pii 255 (342)
T smart00275 178 AFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSII 255 (342)
T ss_pred EEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEE
Confidence 344444 5789999999999999999999999999999999963 2455544455554432 22579999
Q ss_pred EEEeCCCCCCCC--------------C-CCHHHHHHHHHH-----h------CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 119 LVGNKTDLVDKR--------------Q-VSIEEGDGKAKE-----F------GVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 119 vv~nK~D~~~~~--------------~-~~~~~~~~~~~~-----~------~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
|++||.|+..+. . ...+.+..+... . .+-++.++|.+-.++..+|+.+.+.+.
T Consensus 256 l~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~ 334 (342)
T smart00275 256 LFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL 334 (342)
T ss_pred EEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence 999999974321 0 122222222211 1 123467788888888888888777664
No 294
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.40 E-value=1.2e-11 Score=100.37 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=120.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
+=++..|+|+.++|||.|++.|+++.+...+..+....+....+...+....+.+.|.+-. ...-....- ..+|++++
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 3388999999999999999999999998766677777777777777777778888887753 222222111 68999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCChHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~l 166 (207)
+||.+++.+|+.+...++..... ...|+++|++|+|+-+..+.....-..++++++++ .+..|...... .++|..|
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL 578 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKL 578 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence 99999999999998877776555 46999999999999655433332337788888884 46666664223 7999999
Q ss_pred HHHcCC
Q 028546 167 AAALPG 172 (207)
Q Consensus 167 ~~~~~~ 172 (207)
..+...
T Consensus 579 ~~~A~~ 584 (625)
T KOG1707|consen 579 ATMAQY 584 (625)
T ss_pred HHhhhC
Confidence 987653
No 295
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.39 E-value=1.4e-12 Score=92.56 Aligned_cols=150 Identities=22% Similarity=0.161 Sum_probs=91.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeE-------------EEEEE----------------------C
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLS-------------KTMYL----------------------E 54 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~----------------------~ 54 (207)
+.|.|.|++|||||+|+.+++..--........+.++.. +.+.+ +
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 799999999999999999876432211111111111111 00000 0
Q ss_pred CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH
Q 028546 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI 134 (207)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~ 134 (207)
.....+.|++.+| . ....-.+--..+.-|+|+|++.++-.. .+-...+.. -=++|+||.|+.+....+.
T Consensus 94 ~~~~Dll~iEs~G--N-L~~~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i~~------aDllVInK~DLa~~v~~dl 162 (202)
T COG0378 94 FPDLDLLFIESVG--N-LVCPFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGIFK------ADLLVINKTDLAPYVGADL 162 (202)
T ss_pred CCcCCEEEEecCc--c-eecccCcchhhceEEEEEECCCCCCCc--ccCCCceeE------eeEEEEehHHhHHHhCccH
Confidence 0113455666555 1 111111112334889999998643111 110111111 1389999999999888888
Q ss_pred HHHHHHHHHhC--CeEEEEecCCCCChHHHHHHHHHHc
Q 028546 135 EEGDGKAKEFG--VMFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 135 ~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
+...+.+++.+ .+++++|.++|+|++++++|+....
T Consensus 163 evm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 163 EVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 88888888775 5899999999999999999998754
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.38 E-value=1e-11 Score=91.67 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=84.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC------------Cccc----cccceeeeEEE---E-------------EECCe
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFD------------TTYQ----ATIGIDFLSKT---M-------------YLEDR 56 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~------------~~~~----~~~~~~~~~~~---~-------------~~~~~ 56 (207)
-..|.++|+.|+|||||+++++..... ...+ ...+.....-. + .....
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~ 101 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD 101 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence 467899999999999999998743110 0000 00000000000 0 00001
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE 136 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 136 (207)
...+.++++.|.-... ..+....+..+.|+|+.+.+. .+... .... ..|.++++||+|+.+........
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~--~~~~~-~~~~-----~~a~iiv~NK~Dl~~~~~~~~~~ 170 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD--KPLKY-PGMF-----KEADLIVINKADLAEAVGFDVEK 170 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc--hhhhh-HhHH-----hhCCEEEEEHHHccccchhhHHH
Confidence 2367778887721000 111124566677888875332 11111 1111 35679999999996543323333
Q ss_pred HHHHHHHhC--CeEEEEecCCCCChHHHHHHHHHHc
Q 028546 137 GDGKAKEFG--VMFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 137 ~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
.....+..+ .+++++|+++|.|++++++++.++.
T Consensus 171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 444444443 7899999999999999999998753
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.38 E-value=1e-11 Score=92.74 Aligned_cols=139 Identities=13% Similarity=0.140 Sum_probs=80.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+...|+++|++|+|||||++.+.+..-........+. + ++ ......++.++||||.- .. ....+..+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 34578999999999999999999865221111111111 1 11 11233578999999853 22 233468899999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHH-HHHH--hCCeEEEEecCCCC
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVSI---EEGDG-KAKE--FGVMFIETSAKAGF 157 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~-~~~~--~~~~~~~~s~~~~~ 157 (207)
+|+|++....... ...+..+... ..| +++|+||+|+.++..... ..++. +... .+.+++++|++++-
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9999985433222 2233333322 356 456999999864322111 11111 2211 23589999998874
No 298
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.38 E-value=7.6e-12 Score=98.48 Aligned_cols=159 Identities=17% Similarity=0.184 Sum_probs=79.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccc---eeeeEEEEEECCeEEEEEEEecCChhhhccccccc-----c
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG---IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I 79 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~ 79 (207)
.+++|+|+|.+|+|||||||+|.|-...+.....++ ++...... ..-...++.+||.||..-..-....| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y-~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY-PHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE-E-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC-CCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 468999999999999999999986443322221111 11111111 11222369999999954322222222 4
Q ss_pred ccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCC-------CCCCCC----HHHHHHHHHH----
Q 028546 80 RDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLV-------DKRQVS----IEEGDGKAKE---- 143 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~-------~~~~~~----~~~~~~~~~~---- 143 (207)
..-|.+|++.+-. |... ..+...+... ++|+++|-+|+|.- .++... .+.++..+..
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 5678877776543 2221 2223334333 58899999999951 111222 2222222222
Q ss_pred hC---CeEEEEecCCCC--ChHHHHHHHHHHcCCCc
Q 028546 144 FG---VMFIETSAKAGF--NIKPLFRKIAAALPGME 174 (207)
Q Consensus 144 ~~---~~~~~~s~~~~~--~i~~~~~~l~~~~~~~~ 174 (207)
.+ .++|.+|+.+-. ++..+.+.|.+.+..++
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 23 369999988754 47778888888877654
No 299
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.36 E-value=1.8e-12 Score=96.30 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=70.4
Q ss_pred EEEEEEecCChhhhc------ccc-ccc-cccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 58 VRLQLWDTAGQERFR------SLI-PSY-IRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~------~~~-~~~-~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
..+.++||||+-.-- +.+ ..+ -...-+++||+|..+ +.+|-.=.-+--.+..+ -..|+|++.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccc
Confidence 468999999975421 111 111 123457888998864 44443322222223333 36999999999998
Q ss_pred CCCC---------CCCHHHHHH--------HHH--------H-hCCeEEEEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546 127 VDKR---------QVSIEEGDG--------KAK--------E-FGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177 (207)
Q Consensus 127 ~~~~---------~~~~~~~~~--------~~~--------~-~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~ 177 (207)
.+.. +...+.+.. +.+ . .++..+-+|+.+|.|.+++|..+.+.+.+....+
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~y 270 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEY 270 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHh
Confidence 6531 110111110 000 0 1467999999999999999999998877664433
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.34 E-value=3.6e-13 Score=100.99 Aligned_cols=110 Identities=25% Similarity=0.226 Sum_probs=58.3
Q ss_pred EEEEEecCChhhhcccccccc--------ccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
.+.++|||||-++...+...- ...-++++++|... +..|-. .++..+.....-..|.+.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 689999999988766554432 34568899999863 333322 22222221111259999999999997
Q ss_pred CCCC-------CC------------HHHHHHHHHH---hC-C-eEEEEecCCCCChHHHHHHHHHHc
Q 028546 128 DKRQ-------VS------------IEEGDGKAKE---FG-V-MFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 128 ~~~~-------~~------------~~~~~~~~~~---~~-~-~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
++.. .. ....+..+.- ++ . .++++|+.+++++.+++..+-+.+
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 6220 00 0001111111 12 3 699999999999999999887754
No 301
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.33 E-value=1.7e-11 Score=94.17 Aligned_cols=142 Identities=12% Similarity=0.153 Sum_probs=77.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc----------ccccceeeeEEEEEECCeEEEEEEEecCChhhh-------
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY----------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------- 71 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------- 71 (207)
.++|+|+|..|+|||||+|.|++....... .++..+......+..++..+++.|+||||..+.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999976653321 122233333344556777889999999993211
Q ss_pred -----------cccc---------ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 72 -----------RSLI---------PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 72 -----------~~~~---------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
.... ...=..+|+++|.++.+...--..-...++.+.. .+++|-|+.|.|.....+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK----RVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT----TSEEEEEESTGGGS-HHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc----cccEEeEEecccccCHHH
Confidence 0000 0011357899999998752111111233344433 488999999999865544
Q ss_pred CC--HHHHHHHHHHhCCeEEEEecC
Q 028546 132 VS--IEEGDGKAKEFGVMFIETSAK 154 (207)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~~s~~ 154 (207)
+. ...+.......++++|.....
T Consensus 160 l~~~k~~i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 160 LQAFKQRIREDLEENNIKIFDFPED 184 (281)
T ss_dssp HHHHHHHHHHHHHHTT--S------
T ss_pred HHHHHHHHHHHHHHcCceeeccccc
Confidence 32 333445555677777664433
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.33 E-value=9.9e-11 Score=92.49 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=96.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC----CCC------------Cccccc---cceeeeE---EEEE---ECCeEEEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD----KFD------------TTYQAT---IGIDFLS---KTMY---LEDRTVRLQL 62 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~---~~~~~~~~~i 62 (207)
.++.|.|||+.++|||||+++|.+. ... ....++ ++++... ..+. .++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4589999999999999999999877 322 111223 2222222 2222 2344568999
Q ss_pred EecCChhhhcc-------c----------------------cccccc-cCCEEEEEE-ECC-----ChHHHHHHHHHHHH
Q 028546 63 WDTAGQERFRS-------L----------------------IPSYIR-DSSVAVIVY-DVA-----NRQSFLNTSRWIEE 106 (207)
Q Consensus 63 ~D~~G~~~~~~-------~----------------------~~~~~~-~~d~~ilv~-d~~-----~~~s~~~~~~~~~~ 106 (207)
+||+|...-.. . +...+. ++|+.|+|. |.+ +..-.+.-.+++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999332110 0 222345 899999998 774 11222334556666
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC--CCCChHHHHHHHHHHcC
Q 028546 107 VRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK--AGFNIKPLFRKIAAALP 171 (207)
Q Consensus 107 i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~i~~~~~~l~~~~~ 171 (207)
+... ++|+++++|+.|-..+. .......+...++.+++.+|.. +...+..+++.++-.++
T Consensus 176 Lk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 176 LKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred HHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 6555 69999999999942221 2333345566788887777654 44456666666555443
No 303
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.33 E-value=2.1e-11 Score=92.96 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=60.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE---------------EEEEEEecCChhhh-----
Q 028546 12 LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERF----- 71 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~----- 71 (207)
|+++|.|++|||||+|++++........+.++++.....+.+.+.. ..+.++|+||...-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999988866666777777777776665531 25899999994321
Q ss_pred --ccccccccccCCEEEEEEECC
Q 028546 72 --RSLIPSYIRDSSVAVIVYDVA 92 (207)
Q Consensus 72 --~~~~~~~~~~~d~~ilv~d~~ 92 (207)
.......++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 112233467899999999874
No 304
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.1e-11 Score=94.11 Aligned_cols=163 Identities=20% Similarity=0.167 Sum_probs=106.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEE------------------EEC------CeEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTM------------------YLE------DRTVR 59 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~------------------~~~------~~~~~ 59 (207)
..+++|.++|+...|||||..+|.+--. +++..+..++..-.... .+. .-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 4679999999999999999999975322 22222222211111000 000 12236
Q ss_pred EEEEecCChhhhccccccccccCCEEEEEEECCCh----HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--C
Q 028546 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR----QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--S 133 (207)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~ 133 (207)
+.|+|+||++-+-.....-..-.|+++||++++.+ ++-+.+. .+. ..+ -..++++=||+|+.+..+. .
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~----Ale-Iig-ik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM----ALE-IIG-IKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH----HHh-hhc-cceEEEEecccceecHHHHHHH
Confidence 89999999886544443334457999999999973 3333332 121 111 2558999999999755332 3
Q ss_pred HHHHHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546 134 IEEGDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 134 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~ 175 (207)
++++.+|.+- .+.+++++||..+.|++-++++|.+.+..-..
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 4555656553 26799999999999999999999999975443
No 305
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.2e-11 Score=102.68 Aligned_cols=161 Identities=19% Similarity=0.137 Sum_probs=104.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC----------------CeEEEEEEEecCChhh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE----------------DRTVRLQLWDTAGQER 70 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 70 (207)
....=++|+|+..+|||-|+..+.+..+......+.+-.+....+... -...-+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 334568999999999999999999877765543333222111112111 1122588999999999
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC------------------
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV------------------ 132 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~------------------ 132 (207)
|..+.......||++|+|+|+-.+-.-+++ +.+......+.|+||.+||+|-.=.+..
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqti----ESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTI----ESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchh----HHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 999888888899999999999853222222 2222233347999999999995311110
Q ss_pred ------CHHHHHHHHHH-h-------------CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 133 ------SIEEGDGKAKE-F-------------GVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 133 ------~~~~~~~~~~~-~-------------~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
....+..|+.+ + .+.++++||.+|+||-+|+-+|++..+
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 00111111111 0 124789999999999999999998754
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.31 E-value=2.7e-11 Score=86.41 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=43.4
Q ss_pred EEEEEecCChhh----hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028546 59 RLQLWDTAGQER----FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124 (207)
Q Consensus 59 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 124 (207)
.+.|+|+||... ....+..++..+|++|+|.+++...+-.....+.+..... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 489999999643 3356777889999999999999755444444444444333 23489999984
No 307
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.29 E-value=7.4e-11 Score=79.67 Aligned_cols=114 Identities=33% Similarity=0.391 Sum_probs=81.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777753322 2221 222334566788999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
|+.....+++.+ |...+......+.|.++++||.|+.+....... ....++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~--------~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATE--------EGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHH--------HHHHHHHHhCCCcchhh
Confidence 999998888766 777776555567889999999998443333222 22345677888888874
No 308
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.27 E-value=7.5e-11 Score=91.80 Aligned_cols=104 Identities=16% Similarity=0.098 Sum_probs=66.0
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE 136 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 136 (207)
.+.+.|+||+|.... ....+..+|.++++...... +.+......+. .+|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 478999999985422 22356778988888655433 33333333332 36789999999986543211100
Q ss_pred ------HHHHHH---HhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 137 ------GDGKAK---EFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 137 ------~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
...+.. .+..+++++|++++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 011111 12346999999999999999999998754
No 309
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.8e-11 Score=93.74 Aligned_cols=155 Identities=19% Similarity=0.118 Sum_probs=110.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
-|+-.|+--.|||||+..+.+..- ++...++.+++.........+ +.+.|+|.||.+++-......+...|..+|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 467789999999999999986544 455567777777666666555 489999999999988877777788999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH---hCCeEEEEecCCCCChHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE---FGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~ 164 (207)
|+|++++-..+.. ....+.+..+ ....++|++|+|..++..+. +..+..... -+.++|.+|+.+|.|++++.+
T Consensus 80 vV~~deGl~~qtg--EhL~iLdllg-i~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTG--EHLLILDLLG-IKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhH--HHHHHHHhcC-CCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 9999753222221 1112233333 23469999999987654322 122222222 245789999999999999999
Q ss_pred HHHHHcC
Q 028546 165 KIAAALP 171 (207)
Q Consensus 165 ~l~~~~~ 171 (207)
.|..+..
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9999985
No 310
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.8e-10 Score=87.93 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=65.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC----------------eEEEEEEEecCChh---
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED----------------RTVRLQLWDTAGQE--- 69 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~--- 69 (207)
.+++.+||.|++|||||+|+++.........|..|++.......+.+ ....+.|+|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999999887667788888887777665532 13468999999832
Q ss_pred ----hhccccccccccCCEEEEEEECC
Q 028546 70 ----RFRSLIPSYIRDSSVAVIVYDVA 92 (207)
Q Consensus 70 ----~~~~~~~~~~~~~d~~ilv~d~~ 92 (207)
.+......-++++|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 23333444578999999999997
No 311
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=5e-11 Score=101.08 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=86.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--------------CCC----CccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYD--------------KFD----TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
...-.+|.++|+..+|||||..+++.. .+. .+..+..++.-...++.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 445589999999999999999999721 111 11123333333334444443 47999999999
Q ss_pred hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
+-+|.......++-.|++|+|+|+...-..+...-|.+.... ++|.++++||+|..
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~ 141 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRL 141 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECcccc
Confidence 999999999999999999999999976555555555555443 59999999999964
No 312
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.24 E-value=2.3e-10 Score=95.22 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=74.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCChhhhcc------c----ccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------L----IPS 77 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~----~~~ 77 (207)
.++|+++|.+|+||||++|++++....... ....+..........++ ..+.|+||||...... . +..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 478999999999999999999988643222 22223333333333444 5799999999654311 1 112
Q ss_pred ccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCC
Q 028546 78 YIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD--VIIVLVGNKTDLVDK 129 (207)
Q Consensus 78 ~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~ 129 (207)
++. ..|++|||..++.......-..++..+...++.. ..+|||+|+.|..++
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 333 5899999998763222112234555555555421 238999999998753
No 313
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.21 E-value=1.4e-10 Score=87.62 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=71.6
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH-
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI- 134 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~- 134 (207)
..+.+.|++|.|-.+... ....-+|.+++|.=..-++..+.++.-+..+.. ++|+||.|.........
T Consensus 142 aG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 142 AGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKGAEKAARE 210 (323)
T ss_pred cCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhhHHHHHHH
Confidence 356788999987433222 234568999998877777777777766666653 89999999543321111
Q ss_pred -HHHHHHH------HHhCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 135 -EEGDGKA------KEFGVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 135 -~~~~~~~------~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
..+..+. ..|..+++.+|+.+|+|++++++.+.++..-
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 1111111 1245689999999999999999999997653
No 314
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.20 E-value=8.9e-10 Score=85.88 Aligned_cols=127 Identities=14% Similarity=0.199 Sum_probs=83.9
Q ss_pred ceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHH-------HHHHHHHHHHHHHh----c
Q 028546 43 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQS-------FLNTSRWIEEVRTE----R 111 (207)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-------~~~~~~~~~~i~~~----~ 111 (207)
+..+....+.+.+ ..+.++|++||..-+..|..++.+++++|||+++++.+. .+.+.+-+..+... .
T Consensus 182 T~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 182 TTGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 3444455555666 679999999999999999999999999999999996322 22233322222222 2
Q ss_pred CCCCeEEEEEeCCCCCCCCC--------------C-CHHHHHHHHH-H----h-----CCeEEEEecCCCCChHHHHHHH
Q 028546 112 GGDVIIVLVGNKTDLVDKRQ--------------V-SIEEGDGKAK-E----F-----GVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 112 ~~~~p~ivv~nK~D~~~~~~--------------~-~~~~~~~~~~-~----~-----~~~~~~~s~~~~~~i~~~~~~l 166 (207)
-.+.++++++||.|+.++.. . ..+++..+.. + + .+-+..+.|.+-.+|+.+|+.+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 25789999999999864311 1 2222222211 1 1 2234567889999999999999
Q ss_pred HHHcC
Q 028546 167 AAALP 171 (207)
Q Consensus 167 ~~~~~ 171 (207)
.+.+-
T Consensus 340 ~d~Ii 344 (354)
T KOG0082|consen 340 TDTII 344 (354)
T ss_pred HHHHH
Confidence 88764
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.20 E-value=2.5e-10 Score=85.45 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=43.9
Q ss_pred EEEEEEecCChhh-------------hcccccccccc-CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546 58 VRLQLWDTAGQER-------------FRSLIPSYIRD-SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK 123 (207)
Q Consensus 58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 123 (207)
..++++|+||... ...+...|+++ .+++++|+|++..-.-....+....+.. ...++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 4799999999642 12245567774 5699999998742222222233333332 25789999999
Q ss_pred CCCCCC
Q 028546 124 TDLVDK 129 (207)
Q Consensus 124 ~D~~~~ 129 (207)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998643
No 316
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=7.7e-11 Score=85.57 Aligned_cols=148 Identities=22% Similarity=0.322 Sum_probs=95.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhh-----cccccccccc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYIRD 81 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~ 81 (207)
.+-||+++|..|||||++=-.++.+... +...++.++++......+-|. ..+.+||++|++.+ ...-...+.+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3568999999999999976666644332 345667777777766544443 58999999998843 2244667889
Q ss_pred CCEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHHHH----HHHHHhCCeEEEEe
Q 028546 82 SSVAVIVYDVANRQ---SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--VSIEEGD----GKAKEFGVMFIETS 152 (207)
Q Consensus 82 ~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~----~~~~~~~~~~~~~s 152 (207)
++++++|||++..+ .+..-+..++.+.+..+ ..-+++.+.|+|+..... .....-. .......+.++++|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999998643 22333444444444433 455888899999875433 2222222 22222345677877
Q ss_pred cCCCC
Q 028546 153 AKAGF 157 (207)
Q Consensus 153 ~~~~~ 157 (207)
..+-.
T Consensus 161 iwDet 165 (295)
T KOG3886|consen 161 IWDET 165 (295)
T ss_pred hhhHH
Confidence 77653
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.19 E-value=1.3e-11 Score=91.71 Aligned_cols=152 Identities=15% Similarity=0.165 Sum_probs=89.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc------CCC-----CCc-----------ccc----ccceeeeEEEEEECC------
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMY------DKF-----DTT-----------YQA----TIGIDFLSKTMYLED------ 55 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~------~~~-----~~~-----------~~~----~~~~~~~~~~~~~~~------ 55 (207)
+.+.|.|.|+||+|||||+++|.. .++ +++ +.+ .....++.+.+...+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 458899999999999999998851 111 011 000 011233334333221
Q ss_pred ------------eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546 56 ------------RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK 123 (207)
Q Consensus 56 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 123 (207)
..+.+.|++|.|-.+... ....-+|.+++|.-..-.+..+.++.-+.++.. ++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeC
Confidence 235788889887433222 234569999999999877777777665555542 899999
Q ss_pred CCCCCCCCCCHHHHHHHHH-------HhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 124 TDLVDKRQVSIEEGDGKAK-------EFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
.|....... ..+.+.... .|..+++.+|+.++.|++++++.|.++..
T Consensus 177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 995333221 122222221 13468999999999999999999988654
No 318
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.17 E-value=5.2e-10 Score=86.69 Aligned_cols=143 Identities=13% Similarity=0.198 Sum_probs=92.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---cc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LI 75 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~ 75 (207)
.++|+++|+.|+|||||+|+|++...... ..++..+......+..++..++++++||||..++-. .|
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 58999999999999999999997755322 123334555555566677788999999999332111 11
Q ss_pred -----------ccc--------------cccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 76 -----------PSY--------------IRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 76 -----------~~~--------------~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
..| =..+|+++|.+..+.. ++..+ .+.+..+.. .+.+|-|+.|.|....
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCCH
Confidence 111 1357899999987752 22222 334444544 3668889999998755
Q ss_pred CCCC--HHHHHHHHHHhCCeEEEEecCCCCC
Q 028546 130 RQVS--IEEGDGKAKEFGVMFIETSAKAGFN 158 (207)
Q Consensus 130 ~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (207)
.++. ...+++....+++++|. ..+.+.
T Consensus 178 ~El~~~K~~I~~~i~~~nI~vf~--pyd~e~ 206 (373)
T COG5019 178 DELAEFKERIREDLEQYNIPVFD--PYDPED 206 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCceeC--CCCccc
Confidence 4432 34456666778888885 244443
No 319
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=7.7e-10 Score=83.26 Aligned_cols=140 Identities=18% Similarity=0.154 Sum_probs=92.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc-------C---------CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMY-------D---------KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
.+..+|..+|+...|||||-.++.. . ..+++..+..++..........+ ..+..+||||+.+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--ceEEeccCCChHH
Confidence 3458999999999999999988751 1 11233333444443333333344 4567779999999
Q ss_pred hccccccccccCCEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCC-eEEEEEeCCCCCCCCCC---CHHHHHHHHHH
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANR---QSFLNTSRWIEEVRTERGGDV-IIVLVGNKTDLVDKRQV---SIEEGDGKAKE 143 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~-p~ivv~nK~D~~~~~~~---~~~~~~~~~~~ 143 (207)
|-.....-..+.|+.|||+++++. ++-+.+. +.+.. .+ -+++++||.|+.++.++ ...+.+.+...
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 887777777899999999999973 3433321 11111 24 48899999999886553 23455667777
Q ss_pred hCC-----eEEEEecCC
Q 028546 144 FGV-----MFIETSAKA 155 (207)
Q Consensus 144 ~~~-----~~~~~s~~~ 155 (207)
+++ +++.-|++.
T Consensus 161 y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 161 YGFPGDDTPIIRGSALK 177 (394)
T ss_pred cCCCCCCcceeechhhh
Confidence 764 567666554
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.15 E-value=1.9e-10 Score=87.83 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=40.8
Q ss_pred CeEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEecCCCCChHHHHHHHHHH
Q 028546 115 VIIVLVGNKTDLVDKRQVSIEEGDGKAKEF--GVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 115 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
.+-++|+||+|+.+......+......+.. +.+++++|+++|+|++++++||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 445999999999754333344444444443 4689999999999999999999874
No 321
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=3.3e-10 Score=82.84 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=95.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---ccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIP 76 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~ 76 (207)
+++|+|||..|.|||||+|+++...+... ...+..++.....+..++...+++++||||..++-. .|.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 59999999999999999999986554321 123444555555566677778999999999433211 111
Q ss_pred c-----------------------cc--ccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCC--C
Q 028546 77 S-----------------------YI--RDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLV--D 128 (207)
Q Consensus 77 ~-----------------------~~--~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~--~ 128 (207)
. .+ ..+++++|.+..+. .++..+ .+.++.+.+ -+.++-|+.|.|.. +
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence 1 11 25778888887775 233332 233333433 35578889999954 3
Q ss_pred CCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
++....+.+++....+++.+|+-.+.+-+.=+..++
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN 236 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN 236 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence 444445556666677889888877766544333333
No 322
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.12 E-value=4.1e-10 Score=82.05 Aligned_cols=94 Identities=26% Similarity=0.332 Sum_probs=65.8
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhC
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFG 145 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 145 (207)
+..++..+++++|++++|+|++++.. .|...+.... .+.|+++|+||+|+.+... .......+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 57788889999999999999987431 1122222122 3589999999999865433 222233232 2233
Q ss_pred C---eEEEEecCCCCChHHHHHHHHHHcC
Q 028546 146 V---MFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 146 ~---~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
. .++++|++++.|+++++++|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2 6899999999999999999999875
No 323
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=6.4e-10 Score=87.81 Aligned_cols=138 Identities=21% Similarity=0.263 Sum_probs=94.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh--cCCC--------------CCc----cccccceeeeEEEEEECCeEEEEEEEecC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFM--YDKF--------------DTT----YQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~--~~~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (207)
.++-..+|+-+|.+|||||-..|+ ++-. ..+ .....++.+....+.++.....+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 455678999999999999999886 1111 100 12344677777777777767899999999
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV 146 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (207)
|+++|...+=..+..+|..|.|+|+..+-.-.+ .++++..+.+ ++|++=++||+|-... + ..+...+..+.+++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrlR---~iPI~TFiNKlDR~~r-d-P~ELLdEiE~~L~i 163 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRLR---DIPIFTFINKLDREGR-D-PLELLDEIEEELGI 163 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhhc---CCceEEEeeccccccC-C-hHHHHHHHHHHhCc
Confidence 999998887777889999999999986433222 3444444433 7999999999996322 2 13333444445554
Q ss_pred eEEE
Q 028546 147 MFIE 150 (207)
Q Consensus 147 ~~~~ 150 (207)
..++
T Consensus 164 ~~~P 167 (528)
T COG4108 164 QCAP 167 (528)
T ss_pred ceec
Confidence 4333
No 324
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.12 E-value=1.7e-10 Score=93.06 Aligned_cols=161 Identities=20% Similarity=0.386 Sum_probs=119.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
+.+++|+.|||..++|||+|+++++.+.|.+...+..+ .+..++.++++..-+.+.|.+|.. ...|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 35689999999999999999999999988655444433 355666778887788888888732 24556789999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCC--CCCCHHHHHHHHHH-hCCeEEEEecCCCCChHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDK--RQVSIEEGDGKAKE-FGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~ 161 (207)
||||.+.+..+|+.+..+...+..... ..+|+++++++.-.... +.........++.+ ..+.+|++.+.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 999999999999998888777754433 46778888877554322 23333344444443 457899999999999999
Q ss_pred HHHHHHHHcCCC
Q 028546 162 LFRKIAAALPGM 173 (207)
Q Consensus 162 ~~~~l~~~~~~~ 173 (207)
+|+.+..++...
T Consensus 180 vf~~~~~k~i~~ 191 (749)
T KOG0705|consen 180 VFQEVAQKIVQL 191 (749)
T ss_pred HHHHHHHHHHHH
Confidence 999998876544
No 325
>PRK12289 GTPase RsgA; Reviewed
Probab=99.10 E-value=3.4e-10 Score=89.40 Aligned_cols=93 Identities=18% Similarity=0.319 Sum_probs=68.1
Q ss_pred cccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546 73 SLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET 151 (207)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (207)
.+....+.++|.+++|+|+.++. ....+.+|+..+.. .++|+++|+||+|+.++.+. .........++++++++
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 34455688999999999998765 44456677665532 26899999999999644221 22223334678899999
Q ss_pred ecCCCCChHHHHHHHHHHc
Q 028546 152 SAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~ 170 (207)
|+.++.|++++++.|...+
T Consensus 156 SA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 156 SVETGIGLEALLEQLRNKI 174 (352)
T ss_pred EcCCCCCHHHHhhhhccce
Confidence 9999999999999997643
No 326
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.10 E-value=7.4e-09 Score=76.43 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=105.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR 80 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~ 80 (207)
..-+++++|-|.+|||||+..+..-.........++..+....+.+++. .+++.|.||.-.- ....-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence 3579999999999999999999876655555566777777888888884 6888899994332 223445578
Q ss_pred cCCEEEEEEECCChHHHH-HHHHHHHHHHHhcC-----------------------------------------------
Q 028546 81 DSSVAVIVYDVANRQSFL-NTSRWIEEVRTERG----------------------------------------------- 112 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~----------------------------------------------- 112 (207)
.+|.+++|.|++..+.-. .+.+.++.+.-+.+
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 899999999998644333 23444444422211
Q ss_pred ------------------CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 113 ------------------GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 113 ------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
..++++.|-||+|. ++.++...++++-+--+ +|.....|++.+++.+-+.+.
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~PnsvV--iSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNSVV--ISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCcEE--EEeccccCHHHHHHHHHHHhc
Confidence 13445666677764 45666666766555444 455556678888888877654
No 327
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.9e-09 Score=82.39 Aligned_cols=143 Identities=14% Similarity=0.238 Sum_probs=90.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcc------
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------ 73 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------ 73 (207)
.|.++++|+.|.|||||+|.|+...+... ...+..+......+.-++..++++++||||..+.-.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 49999999999999999999987655322 112333444444455567788999999999332111
Q ss_pred -------------------ccccccc--cCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 74 -------------------LIPSYIR--DSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 74 -------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
..+..+. .+|+.+|.+..+.. .+..+ ...+..+.. .+.+|-|+.|.|...+.+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~----~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK----KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc----cccccceeeccccCCHHH
Confidence 1111122 68899999988752 22222 223333333 467888999999865544
Q ss_pred CC--HHHHHHHHHHhCCeEEEEecCCC
Q 028546 132 VS--IEEGDGKAKEFGVMFIETSAKAG 156 (207)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~~s~~~~ 156 (207)
+. ...++.....+++++|....-..
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 32 34455666677888776665554
No 328
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=8.7e-10 Score=90.98 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=84.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------------ccccceeeeEEEEE---ECCeEEEEEEEecCCh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY-----------------QATIGIDFLSKTMY---LEDRTVRLQLWDTAGQ 68 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~~i~D~~G~ 68 (207)
-.+++++|+-.+|||+|+.-|..+..+..+ .+..++.....+.. .+++.+-+++.||||+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 378999999999999999999866553331 12233333333332 3566788999999999
Q ss_pred hhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 69 ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
-.|.......++.+|++++|+|+.+.-.++.-+-....+. .+.|++||+||+|.
T Consensus 208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 9999888888999999999999998666655433333333 26899999999995
No 329
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=6.4e-10 Score=86.12 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=80.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cccceeeeEEEEEECCe------------------------------
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQ-ATIGIDFLSKTMYLEDR------------------------------ 56 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------ 56 (207)
.+.-|+++|+-..||||||+.|+.+.|+..+. +..+.+.+...+..+..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 34679999999999999999999999975543 34444544444432211
Q ss_pred ---------EEEEEEEecCChh-----------hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe
Q 028546 57 ---------TVRLQLWDTAGQE-----------RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI 116 (207)
Q Consensus 57 ---------~~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p 116 (207)
--.++++||||.- .|...+.=++..+|.+|++||+-.-+--++..+.+..++-+ .--
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Edk 213 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDK 213 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cce
Confidence 0138999999922 13334455678999999999986433333334444444433 334
Q ss_pred EEEEEeCCCCCCCCC
Q 028546 117 IVLVGNKTDLVDKRQ 131 (207)
Q Consensus 117 ~ivv~nK~D~~~~~~ 131 (207)
+-||+||.|+.+..+
T Consensus 214 iRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 214 IRVVLNKADQVDTQQ 228 (532)
T ss_pred eEEEeccccccCHHH
Confidence 778999999876654
No 330
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.02 E-value=7.3e-10 Score=84.42 Aligned_cols=150 Identities=14% Similarity=0.155 Sum_probs=103.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh---------hccccccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYIR 80 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~ 80 (207)
.-|.|||=.++|||||+++|.+........-..+.+......+..++. .+.+.||.|.-. |..... -+.
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLe-eVa 256 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLE-EVA 256 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHH-HHh
Confidence 458999999999999999999877766667777777777776666654 788889999332 222222 246
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe----EEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI----IVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG 156 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (207)
.+|.++.|.|+++|..-......+..+....-...| ++=|.||+|..+... . ...+ ..+.+|+.+|
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n--~~v~isaltg 326 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKN--LDVGISALTG 326 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccC--CccccccccC
Confidence 899999999999976443333334444433211222 567788888643221 1 1112 2678899999
Q ss_pred CChHHHHHHHHHHcC
Q 028546 157 FNIKPLFRKIAAALP 171 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~ 171 (207)
+|++++.+.+-..+.
T Consensus 327 dgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 327 DGLEELLKAEETKVA 341 (410)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999887754
No 331
>PRK12288 GTPase RsgA; Reviewed
Probab=99.00 E-value=2.9e-09 Score=84.19 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=68.0
Q ss_pred cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHHHhCCeEEEEecCCCC
Q 028546 79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-SIEEGDGKAKEFGVMFIETSAKAGF 157 (207)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (207)
..++|.+++|++.+...++..+.+|+..+.. .++|+++|+||+|+.++.+. ............+++++++|+.++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999887888889999875543 25889999999999654321 1122223334568899999999999
Q ss_pred ChHHHHHHHHHHc
Q 028546 158 NIKPLFRKIAAAL 170 (207)
Q Consensus 158 ~i~~~~~~l~~~~ 170 (207)
|+++++++|...+
T Consensus 195 GideL~~~L~~ki 207 (347)
T PRK12288 195 GLEELEAALTGRI 207 (347)
T ss_pred CHHHHHHHHhhCC
Confidence 9999999997654
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.99 E-value=1.1e-09 Score=77.25 Aligned_cols=95 Identities=24% Similarity=0.219 Sum_probs=64.4
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET 151 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (207)
+.+...+++++|++|+|+|++++..... ..+...+.. .+.|+++|+||+|+.+.... ..........+.+++++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence 4456677788999999999987543222 122222221 25899999999998543221 11112233456789999
Q ss_pred ecCCCCChHHHHHHHHHHcCC
Q 028546 152 SAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~~~ 172 (207)
|++++.|++++++.|.+.+..
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 77 SAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EccccccHHHHHHHHHHHHhh
Confidence 999999999999999988753
No 333
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.95 E-value=4.6e-09 Score=81.27 Aligned_cols=89 Identities=20% Similarity=0.179 Sum_probs=68.2
Q ss_pred ccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q 028546 76 PSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK 154 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 154 (207)
...+.++|++++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+.++.+ ...........+++++++|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999887 778888888766543 589999999999965421 111222334568899999999
Q ss_pred CCCChHHHHHHHHHH
Q 028546 155 AGFNIKPLFRKIAAA 169 (207)
Q Consensus 155 ~~~~i~~~~~~l~~~ 169 (207)
++.|+++++.+|...
T Consensus 148 ~g~gi~~L~~~L~~k 162 (287)
T cd01854 148 TGEGLDELREYLKGK 162 (287)
T ss_pred CCccHHHHHhhhccc
Confidence 999999999988753
No 334
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.92 E-value=1.6e-08 Score=78.78 Aligned_cols=169 Identities=16% Similarity=0.224 Sum_probs=97.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc------------------cccccceeeeEEE-----------------
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT------------------YQATIGIDFLSKT----------------- 50 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~----------------- 50 (207)
..-+++++|+|...+|||||+..|..+..+.. +.+..+.++....
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 34468999999999999999987764433221 1122222221111
Q ss_pred --EEECCeEEEEEEEecCChhhhccccccccc--cCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546 51 --MYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTD 125 (207)
Q Consensus 51 --~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D 125 (207)
--..+...-++|+|.+|+++|....-.-+. -.|...+++-++-. +-. .++-+...... ++|++||++|+|
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALaL---~VPVfvVVTKID 284 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALAL---HVPVFVVVTKID 284 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhhh---cCcEEEEEEeec
Confidence 111222235899999999998776543333 36777888877631 111 11111111111 699999999999
Q ss_pred CCCCCCCCHHHHHHHHH-----------------------------HhCCeEEEEecCCCCChHHHHHHHHHHcCCCccC
Q 028546 126 LVDKRQVSIEEGDGKAK-----------------------------EFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176 (207)
Q Consensus 126 ~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~ 176 (207)
+..+..+ .+..+.+.+ +.-|++|++|..+|.|+ +++..++..+.-+...
T Consensus 285 MCPANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL-~LLkmFLNlls~R~~~ 362 (641)
T KOG0463|consen 285 MCPANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNL-PLLKMFLNLLSLRRQL 362 (641)
T ss_pred cCcHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCCh-HHHHHHHhhcCccccc
Confidence 9765432 111111111 11267999999999998 5556666665544444
Q ss_pred ccccc
Q 028546 177 SSTKQ 181 (207)
Q Consensus 177 ~~~~~ 181 (207)
..+.+
T Consensus 363 ~E~~P 367 (641)
T KOG0463|consen 363 NENDP 367 (641)
T ss_pred ccCCC
Confidence 43333
No 335
>PRK00098 GTPase RsgA; Reviewed
Probab=98.90 E-value=7e-09 Score=80.69 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=64.8
Q ss_pred ccccCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546 78 YIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG 156 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (207)
.+.++|++++|+|+.++..... +.+|+..+.. .++|+++|+||+|+.+..+ ...........++++++++|++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3589999999999987765444 4667666543 2689999999999963322 122233344556889999999999
Q ss_pred CChHHHHHHHHHH
Q 028546 157 FNIKPLFRKIAAA 169 (207)
Q Consensus 157 ~~i~~~~~~l~~~ 169 (207)
.|++++++.|...
T Consensus 153 ~gi~~L~~~l~gk 165 (298)
T PRK00098 153 EGLDELKPLLAGK 165 (298)
T ss_pred ccHHHHHhhccCc
Confidence 9999999988644
No 336
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.2e-08 Score=73.51 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=95.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccc-ccceeeeEEEEEECCeEEEEEEEecCChhhhccc---cccccccCCEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSSVA 85 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d~~ 85 (207)
.+|+++|...+|||++-...+....+.+.-- ..+..+. .-++.+.-+++.+||.||+-.+-.- ....++++.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~--~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKIT--RDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCccc--HhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 4599999999999998887766554332110 0010110 0122334468999999998765432 34568999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCC-CCCCCCH------HHHHHHHHH----hCCeEEEEe
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTER--GGDVIIVLVGNKTDLV-DKRQVSI------EEGDGKAKE----FGVMFIETS 152 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~-~~~~~~~------~~~~~~~~~----~~~~~~~~s 152 (207)
|||+|+.+ +-.+.+..+...+.... +.++.+-|++.|.|-. ++..+.. .....+++. ....++.+|
T Consensus 106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99999986 34455555555554433 3567788999999954 3322221 111111111 123467777
Q ss_pred cCCCCChHHHHHHHHHHcC
Q 028546 153 AKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 153 ~~~~~~i~~~~~~l~~~~~ 171 (207)
..+- .+-|.|..+.+.+-
T Consensus 185 IyDH-SIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 185 IYDH-SIFEAFSKVVQKLI 202 (347)
T ss_pred ecch-HHHHHHHHHHHHHh
Confidence 7765 77788877777543
No 337
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.86 E-value=5.2e-08 Score=76.12 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=97.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--------------ccceeeeEEEEEECC----------------
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA--------------TIGIDFLSKTMYLED---------------- 55 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---------------- 55 (207)
.+..+.+.+.|+...|||||+-.|+.+..+...-. ..+.++....+-+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 45678999999999999999999886665433221 122233333332222
Q ss_pred -----eEEEEEEEecCChhhhcccc--ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 56 -----RTVRLQLWDTAGQERFRSLI--PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 56 -----~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
..--+.|+|+.|++.|.... ..+-.+.|..++++.+++.-+.-. ++-+-.+... ..|++|+++|+|+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a~---~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALAM---ELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhhh---cCCEEEEEEecccCc
Confidence 12248899999999886644 334567999999999997432211 2222222211 589999999999975
Q ss_pred CCCCC--HHHHH----------------------HHHHHhC---CeEEEEecCCCCChHHHHHHHHH
Q 028546 129 KRQVS--IEEGD----------------------GKAKEFG---VMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 129 ~~~~~--~~~~~----------------------~~~~~~~---~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
+..+. .+++. ..+.+.+ .|+|.+|+-+|+|++-+.+.+..
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 42211 11111 1112222 37999999999998655444443
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.84 E-value=8.7e-09 Score=72.73 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=58.3
Q ss_pred ccccCCEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q 028546 78 YIRDSSVAVIVYDVANRQS--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA 155 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (207)
.+.++|++++|+|+.++.. ...+.+++ .. ...++|+++|+||+|+.++.+. ......+...+...++.+|++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 3578999999999987532 22233322 22 2335899999999999644321 1122222222233458899999
Q ss_pred CCChHHHHHHHHHHcC
Q 028546 156 GFNIKPLFRKIAAALP 171 (207)
Q Consensus 156 ~~~i~~~~~~l~~~~~ 171 (207)
+.|++++++.|.+...
T Consensus 80 ~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 80 PFGKGSLIQLLRQFSK 95 (157)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999988754
No 339
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.83 E-value=3e-08 Score=80.15 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=78.8
Q ss_pred eeeEEEEEE-CCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH----------HHHHHHHHHHHHHH-hcC
Q 028546 45 DFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ----------SFLNTSRWIEEVRT-ERG 112 (207)
Q Consensus 45 ~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~i~~-~~~ 112 (207)
.+....+.+ .+ ..+.++|++|+...+..|..++.+++++|||+++++.+ .+.....++..+-. ..-
T Consensus 224 Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 224 GITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp SEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 334444555 44 57899999999999999999999999999999998521 23333333333322 222
Q ss_pred CCCeEEEEEeCCCCCCC----C-----------C---CCHHHHHHHHHHh--------C--C--eEEEEecCCCCChHHH
Q 028546 113 GDVIIVLVGNKTDLVDK----R-----------Q---VSIEEGDGKAKEF--------G--V--MFIETSAKAGFNIKPL 162 (207)
Q Consensus 113 ~~~p~ivv~nK~D~~~~----~-----------~---~~~~~~~~~~~~~--------~--~--~~~~~s~~~~~~i~~~ 162 (207)
.+.|++|++||.|+..+ . . -..+.+..+.... . . -+..+++.+...+..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 57999999999996421 0 0 1223333332221 1 1 3457888888888888
Q ss_pred HHHHHHH
Q 028546 163 FRKIAAA 169 (207)
Q Consensus 163 ~~~l~~~ 169 (207)
|+.+.+.
T Consensus 382 ~~~v~~~ 388 (389)
T PF00503_consen 382 FNAVKDI 388 (389)
T ss_dssp HHHHHHH
T ss_pred HHHhcCc
Confidence 8887765
No 340
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.9e-08 Score=81.08 Aligned_cols=138 Identities=11% Similarity=0.156 Sum_probs=84.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
..++.+=++|+||||.||||||..|+..-.... -.++......+.+..-+++|.+||. +...++. ..+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t-----i~~i~GPiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT-----IDEIRGPITVVSGKTRRITFLECPS--DLHQMID-VAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhh-----hhccCCceEEeecceeEEEEEeChH--HHHHHHh-HHHhhhe
Confidence 345668899999999999999998875432111 1122223344566777999999993 3344433 4477999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCCHHHHHHHHHH-------hCCeEEEEecCC
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVSIEEGDGKAKE-------FGVMFIETSAKA 155 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~ 155 (207)
+++++|.+-+-.+++. +++..+..+ ..| ++-|+++.|+.....- ...+.....+ .|+++|.+|...
T Consensus 137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9999999954333332 233333333 344 6778999998643222 2222221111 167888888554
No 341
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.6e-08 Score=79.68 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=86.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccc--------------------------------------------e
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG--------------------------------------------I 44 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~--------------------------------------------~ 44 (207)
..||+++|...+||||++|+++..++-++..-..+ -
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 47999999999999999999985554222111000 0
Q ss_pred eeeEEEEEECCe----EEEEEEEecCChh---hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE
Q 028546 45 DFLSKTMYLEDR----TVRLQLWDTAGQE---RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVII 117 (207)
Q Consensus 45 ~~~~~~~~~~~~----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ 117 (207)
..-.+.+.-++. .-.+.++|.||.+ ...+-...+...+|++|||.++.+..+.. .+.++..+... +..+
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~~---Kpni 264 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSEE---KPNI 264 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhcc---CCcE
Confidence 000011111110 0157888999944 33444566778999999999998644332 34455545444 4568
Q ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHhC--------CeEEEEecCCC
Q 028546 118 VLVGNKTDLVDKRQVSIEEGDGKAKEFG--------VMFIETSAKAG 156 (207)
Q Consensus 118 ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~ 156 (207)
+++.||+|.........+.+......+. =.+|++|++.-
T Consensus 265 FIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 265 FILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred EEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence 8888999986554444444444433332 24888986654
No 342
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.7e-08 Score=84.58 Aligned_cols=120 Identities=22% Similarity=0.181 Sum_probs=85.8
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCC------------CCc--cccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKF------------DTT--YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
...+..+--+|+++.+...|||||...|+...- -+. ...+.+++.....+..-...+.++++|+||
T Consensus 2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg 81 (887)
T KOG0467|consen 2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG 81 (887)
T ss_pred CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence 445566668999999999999999999984321 111 123444444444454544567899999999
Q ss_pred hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546 68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125 (207)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 125 (207)
+-+|.+......+-+|++++++|+.++-..++..-+.+.+.+ +.-+++|+||+|
T Consensus 82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkid 135 (887)
T KOG0467|consen 82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKID 135 (887)
T ss_pred ccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhh
Confidence 999999999999999999999999865444443333333332 345789999999
No 343
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=3.9e-08 Score=76.59 Aligned_cols=161 Identities=14% Similarity=0.239 Sum_probs=97.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--------------ccceeeeEE---------EEEEC---------
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA--------------TIGIDFLSK---------TMYLE--------- 54 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~--------------~~~~~~~~~---------~~~~~--------- 54 (207)
.-+++++|+|...+|||||+..|..+..+..+.+ +.+..+... .+.+.
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 3468999999999999999998886655433221 111111111 11110
Q ss_pred -CeEEEEEEEecCChhhhccccccccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 55 -DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 55 -~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
....-++|+|.+|+.+|....-..+. ..|..++|++++..-.+.. .+-+..+... ++|++|+++|+|+.+...
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccccchh
Confidence 11224899999999998876544433 4788999999986543322 2222223323 699999999999976522
Q ss_pred C------------------------CHHHHHHHHHHh---C-CeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 132 V------------------------SIEEGDGKAKEF---G-VMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 132 ~------------------------~~~~~~~~~~~~---~-~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
+ ..+++..-+.+. + .++|-+|+-+|+|++-+...|.-+-.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp 388 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSP 388 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCC
Confidence 1 112222222221 2 37999999999998665555544433
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=2.6e-08 Score=70.34 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=38.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
+.++|+++|.+|+|||||+|++.+.... ....++.+.. ...+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence 4678999999999999999999986653 3333443332 22233332 478999998
No 345
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.77 E-value=2.1e-08 Score=69.45 Aligned_cols=53 Identities=23% Similarity=0.299 Sum_probs=38.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (207)
+++++|.+|+|||||+|++.+....... .+..+. ....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTK--HFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCccc--ceEEEEeCC---CEEEEECCCc
Confidence 7999999999999999999988764222 223332 333444544 5799999994
No 346
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.75 E-value=5.2e-08 Score=77.76 Aligned_cols=95 Identities=34% Similarity=0.447 Sum_probs=69.2
Q ss_pred hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH----HHHHH
Q 028546 68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD----GKAKE 143 (207)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~ 143 (207)
.++|..+...+...++++++|+|+.+.. ..|...+..... +.|+++|+||+|+.+. ....+... ..+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 5678888888889999999999997533 223344443332 5789999999998653 22233333 33555
Q ss_pred hCC---eEEEEecCCCCChHHHHHHHHHH
Q 028546 144 FGV---MFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 144 ~~~---~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
.++ .++++||++|.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 665 48999999999999999999775
No 347
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.73 E-value=3.8e-08 Score=70.39 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=39.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
.++++++|.|++|||||+|++.+... .....++.+.+. ..+..+. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcC
Confidence 48999999999999999999998765 333444444432 3333333 588999998
No 348
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=8.6e-08 Score=73.78 Aligned_cols=142 Identities=21% Similarity=0.198 Sum_probs=90.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc-------CC---C------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMY-------DK---F------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~-------~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (207)
+..+|.-+|+...|||||-.++.. .+ | +++ ...++.+....+.+....-.+.=.||||+.+|
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEE--kaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEE--KARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhh--hhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 458899999999999999888751 11 1 222 33344444444444443334555699999998
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC---CCHHHHHHHHHHhC---
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ---VSIEEGDGKAKEFG--- 145 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 145 (207)
-.....-..+.|+.|+|+.++|..- ...++-+...++ .+ -..++|++||.|+.++.+ +..-+++++...++
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQ-VG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQ-VG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHH-cC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 7776666678999999999998432 222221111221 12 245899999999985543 33445566677775
Q ss_pred --CeEEEEecC
Q 028546 146 --VMFIETSAK 154 (207)
Q Consensus 146 --~~~~~~s~~ 154 (207)
++++.-||+
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 468776643
No 349
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.71 E-value=2.8e-08 Score=69.97 Aligned_cols=84 Identities=20% Similarity=0.103 Sum_probs=55.3
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHH
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (207)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.+..++ ......+....+..++.+|+.++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999987654433 22221 1112236899999999998543221 11122232233567899999999999999
Q ss_pred HHHHHHHc
Q 028546 163 FRKIAAAL 170 (207)
Q Consensus 163 ~~~l~~~~ 170 (207)
++.+.+..
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99997754
No 350
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.69 E-value=6.4e-08 Score=76.55 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=63.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCe---------------EEEEEEEecCChhh---
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER--- 70 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--- 70 (207)
+++.++|.|++|||||++++++... .....+.++++.....+.+.+. ...+.+.|.||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999999887 5555577777777777666552 12678999999543
Q ss_pred ----hccccccccccCCEEEEEEECC
Q 028546 71 ----FRSLIPSYIRDSSVAVIVYDVA 92 (207)
Q Consensus 71 ----~~~~~~~~~~~~d~~ilv~d~~ 92 (207)
........++++|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223444578999999999985
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=6.6e-08 Score=69.23 Aligned_cols=91 Identities=21% Similarity=0.171 Sum_probs=60.5
Q ss_pred cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546 73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (207)
......+.++|++++|+|++++...... .++..+ .+.|+++|+||+|+.++... ..........+..++.+|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 3456667899999999999865432221 112211 14789999999998543211 111122223345789999
Q ss_pred cCCCCChHHHHHHHHHHcC
Q 028546 153 AKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 153 ~~~~~~i~~~~~~l~~~~~ 171 (207)
++++.|++++.+.+.+.+.
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999998763
No 352
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.63 E-value=7.2e-08 Score=72.27 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=90.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cccceeeeEEEEEECCeEEEEEEEecCC----------hhhhccc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL 74 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 74 (207)
..++.++++.|..++|||+|||-++......... +..+.......+.+.. .+.++|.|| ..++..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 3456899999999999999999998766532211 1333222233333343 678889999 2233344
Q ss_pred cccccccC---CEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEEeCCCCCCCCC-----CC------HHHHHH
Q 028546 75 IPSYIRDS---SVAVIVYDVANRQSFLNTSR-WIEEVRTERGGDVIIVLVGNKTDLVDKRQ-----VS------IEEGDG 139 (207)
Q Consensus 75 ~~~~~~~~---d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-----~~------~~~~~~ 139 (207)
...|+.+- --+++.+|++-+ ++.... .++.+.+. ++|+.+|+||+|...... .. ....-.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge~---~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGEN---NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhhc---CCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 45554332 245666677632 222111 11222222 699999999999642211 10 111111
Q ss_pred HHHHhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546 140 KAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 140 ~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
.......+++.+|+.++.|+++++-.+.+..
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhhhh
Confidence 1112245788999999999998877766654
No 353
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.62 E-value=1.4e-07 Score=70.11 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=56.7
Q ss_pred eeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCCh-------HHHHHHHHHHHHHHHh----cCC
Q 028546 45 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR-------QSFLNTSRWIEEVRTE----RGG 113 (207)
Q Consensus 45 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-------~s~~~~~~~~~~i~~~----~~~ 113 (207)
.++...+.++- ++|+.+|.+|+.+-+..|...+..+.++|||...+.. .+-+.+++.+..++.. ...
T Consensus 191 GIfet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 191 GIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ceeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 33444444444 6899999999999999999999999999999998851 1122333333333222 224
Q ss_pred CCeEEEEEeCCCCC
Q 028546 114 DVIIVLVGNKTDLV 127 (207)
Q Consensus 114 ~~p~ivv~nK~D~~ 127 (207)
.+.+||++||.|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 57799999999974
No 354
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.62 E-value=6e-08 Score=70.62 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=37.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC---------CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
..+++++|.+|+|||||+|+|.+... .....++++.+ ...+.+.. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence 46899999999999999999997543 22333443333 33333433 578999999
No 355
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.61 E-value=1.4e-07 Score=72.56 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=67.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC---------------eEEEEEEEecCChhh--
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED---------------RTVRLQLWDTAGQER-- 70 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~-- 70 (207)
..++|.+||.|++|||||+|+++........-|..+++.....+.+.+ ....++++|++|.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 348999999999999999999999998888889999888877666532 134699999998332
Q ss_pred -----hccccccccccCCEEEEEEECCC
Q 028546 71 -----FRSLIPSYIRDSSVAVIVYDVAN 93 (207)
Q Consensus 71 -----~~~~~~~~~~~~d~~ilv~d~~~ 93 (207)
.......-++++|+++-|+++.+
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22233445789999999998863
No 356
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.60 E-value=9.6e-07 Score=65.95 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=52.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--CCCCccc-cccceeeeEEEEEEC-CeEEEEEEEecCChhhhcc------cccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD--KFDTTYQ-ATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRS------LIPSYI 79 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~~~~~ 79 (207)
.-|.|+|++++|||+|+|++++. .|..... ...+..+..+..... +....+.++||+|...... .....+
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l 87 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFAL 87 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHH
Confidence 56789999999999999999998 6643322 222223333333221 2235899999999654322 112222
Q ss_pred cc--CCEEEEEEECCC
Q 028546 80 RD--SSVAVIVYDVAN 93 (207)
Q Consensus 80 ~~--~d~~ilv~d~~~ 93 (207)
.. ++++||..+...
T Consensus 88 ~~llss~~i~n~~~~~ 103 (224)
T cd01851 88 ATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHhCEEEEeccCcc
Confidence 33 788888887764
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.59 E-value=1.9e-07 Score=66.80 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=39.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-cccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (207)
..++++++|.+++|||||++++.+..+... ..+..+.. ...+.++ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 347999999999999999999998776422 22333333 3333333 35789999994
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.58 E-value=2.3e-07 Score=71.57 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=40.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (207)
..++++++|.+++|||||+|++.+.... ....++.+.. ...+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence 4589999999999999999999987653 3333443333 23344433 5789999996
No 359
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.57 E-value=1.6e-07 Score=72.32 Aligned_cols=94 Identities=26% Similarity=0.241 Sum_probs=62.9
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET 151 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (207)
.......+..+|++++|+|+..+.+.... .+..+. .+.|+++|+||+|+.+.... ...... ....+.+++.+
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~~-~~~~~~-~~~~~~~vi~i 83 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAVT-KQWLKY-FEEKGIKALAI 83 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHHH-HHHHHH-HHHcCCeEEEE
Confidence 33456678899999999999865433221 111111 14789999999998543211 111112 22345688999
Q ss_pred ecCCCCChHHHHHHHHHHcCCC
Q 028546 152 SAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
|+.++.|++++.+.+.+.+.+.
T Consensus 84 Sa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 84 NAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred ECCCcccHHHHHHHHHHHHHHh
Confidence 9999999999999998887644
No 360
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.57 E-value=2.7e-07 Score=71.54 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=41.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (207)
..++++++|.+++|||||+|++.+... .....++.+.+. ..+..+. .+.++||||.-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence 458999999999999999999998776 333344544443 3344443 57899999953
No 361
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.57 E-value=6.8e-07 Score=66.54 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=94.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccccC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS 82 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 82 (207)
-++.++|-|.+|||||+..+.+..........++..........++ -++.+.|.||.-+- ........+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4889999999999999999987654433222333222233333344 47899999994321 22445567889
Q ss_pred CEEEEEEECCChHHHHHH-HHHHHHHHHh---------------------------------------------------
Q 028546 83 SVAVIVYDVANRQSFLNT-SRWIEEVRTE--------------------------------------------------- 110 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~-~~~~~~i~~~--------------------------------------------------- 110 (207)
+.+++|.|+..+-+...+ ...++-+.-+
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 999999999864433332 1111111000
Q ss_pred --------cC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 111 --------RG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 111 --------~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
.. ..+|.+.++||+|...-.++.. .+. ....++|+.++.|++++++.+-+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi--------i~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI--------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccce--------eeeccceeecccccccchHHHHHHHhhcch
Confidence 01 2567788888888543333221 122 34689999999999999998877654
No 362
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=3e-07 Score=72.29 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=95.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEECC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLED 55 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (207)
-..++++++|+..+||||+-..++... -.+++....++......+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 455999999999999999887664110 0223333444444444444443
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCC---hHHHHHH--HHHHHHHHHhcCCCCeEEEEEeCCCCCCC-
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN---RQSFLNT--SRWIEEVRTERGGDVIIVLVGNKTDLVDK- 129 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~D~~~~- 129 (207)
-++++.|+||+..|-...-.-..+||+.++|+++-. ...|+.- .+....+. ....-...|+++||+|-...
T Consensus 157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~La-kt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHH-HhhccceEEEEEEeccCCccC
Confidence 479999999987766655555678999999998843 2334432 22222222 22234568999999995422
Q ss_pred -CCCCHHHH----HHHHHHh------CCeEEEEecCCCCChHHHHH
Q 028546 130 -RQVSIEEG----DGKAKEF------GVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 130 -~~~~~~~~----~~~~~~~------~~~~~~~s~~~~~~i~~~~~ 164 (207)
..-.+++. ..+.... ...++++|..+|.++++...
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 22222222 2233322 24689999999999887664
No 363
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.55 E-value=8.4e-08 Score=67.28 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=33.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC------ccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDT------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (207)
-.++++|+.|+|||||+|+|++..-.. ...++.-+......+.+.+. ..++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 457889999999999999999763311 11122222223344455442 478899996553
No 364
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.2e-07 Score=74.92 Aligned_cols=115 Identities=22% Similarity=0.278 Sum_probs=90.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--------CCCCCc--------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY--------DKFDTT--------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 73 (207)
-+|.++.+..+||||.-.++++ +.+... -.+..++.+....+.++.+++++.++||||+-+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 5789999999999999988862 122111 123456777888888888889999999999999999
Q ss_pred ccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 74 LIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
.+...++--|+++.|||++-+-.-+.+.-|.+.- ..++|-+.++||+|...
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqad----k~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD----KFKIPAHCFINKMDKLA 168 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhcc----ccCCchhhhhhhhhhhh
Confidence 9999999999999999999655556666666543 23689999999999743
No 365
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.55 E-value=5.8e-07 Score=81.71 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=71.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcc----ccccceee-eEEEEEECCeEEEEEEEecCChh--------hhccccccc
Q 028546 12 LVFLGDQSVGKTSIITRFMYDKFDTTY----QATIGIDF-LSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSY 78 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~ 78 (207)
.+|+|++|+||||||..- +..++-.. ....+... ......+.+ +-.++|++|.- .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999999876 44443221 11111100 011112233 45789999921 122234333
Q ss_pred c---------ccCCEEEEEEECCCh-----HH----HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 79 I---------RDSSVAVIVYDVANR-----QS----FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 79 ~---------~~~d~~ilv~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
+ +-.+++|+++|+.+- +. ...+...++++....+-..||.|+++|+|+..-.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF 259 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGF 259 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCH
Confidence 2 348999999999752 11 1345666677777778889999999999986543
No 366
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.54 E-value=3.5e-07 Score=64.40 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=37.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
...+++++|.+++|||||++++.+..... ..+..+.......+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999765322 233333322222222332 689999998
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=2.8e-07 Score=64.92 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=39.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
....+++++|.+++|||||+|++.+... .....+..+.+... +..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 3568899999999999999999998663 23333444444333 2233 2588999998
No 368
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.50 E-value=1.3e-05 Score=63.97 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=87.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-----------------CCccccccceeeeE--------EEEEE-CCeEEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF-----------------DTTYQATIGIDFLS--------KTMYL-EDRTVRLQL 62 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~-----------------~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~i 62 (207)
.+=|.||||..+|||||+.+|....+ +++ ..+.++.... ..+.+ ++..+++.+
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 47799999999999999999962211 111 1111111111 12333 456678999
Q ss_pred EecCChh-----hh---------cccc---------------ccccc--cCCEEEEEEECCC----hHHHHH-HHHHHHH
Q 028546 63 WDTAGQE-----RF---------RSLI---------------PSYIR--DSSVAVIVYDVAN----RQSFLN-TSRWIEE 106 (207)
Q Consensus 63 ~D~~G~~-----~~---------~~~~---------------~~~~~--~~d~~ilv~d~~~----~~s~~~-~~~~~~~ 106 (207)
+||.|-- .| .+-| +..++ ..-++++.-|.+= ++.+.. -.+.+..
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 9999811 00 0011 11111 2336666666651 233333 3444444
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC--CCChHHHHHHHHHHc
Q 028546 107 VRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA--GFNIKPLFRKIAAAL 170 (207)
Q Consensus 107 i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~~~~~l~~~~ 170 (207)
+... ++|+++++|-.+-. .+-..+....+..+|+.++++++... ...+..+++.++-.+
T Consensus 176 Lk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF 236 (492)
T ss_pred HHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence 4444 69999999988732 22334555667778999988887554 444555555554433
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.47 E-value=6.1e-07 Score=62.13 Aligned_cols=77 Identities=23% Similarity=0.220 Sum_probs=51.3
Q ss_pred ccccccCCEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFL--NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSA 153 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 153 (207)
...+..+|++++|+|+.++.+.. .+.+++... ..++|+++|+||+|+.++.. ...........+..++++|+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 34568899999999998765433 233333322 13589999999999864332 22233344455678999999
Q ss_pred CCCCC
Q 028546 154 KAGFN 158 (207)
Q Consensus 154 ~~~~~ 158 (207)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 370
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.47 E-value=2.5e-05 Score=54.26 Aligned_cols=148 Identities=14% Similarity=0.214 Sum_probs=77.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecC-Chhh--------------h-
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQER--------------F- 71 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~--------------~- 71 (207)
..++|.+.|+||+|||||+..+...--... ...-.+....+..++...-|.++|.. |... |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 469999999999999999988763211111 00112223333345555566666665 3111 1
Q ss_pred ----------ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 028546 72 ----------RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA 141 (207)
Q Consensus 72 ----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 141 (207)
.......++.||++| +|--.+-.+. .......+........|++..+.+-+- .. ..+..
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr----~P----~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR----HP----LVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC----Ch----HHHHh
Confidence 011222234556554 4555432221 233444444444456887777765542 11 12223
Q ss_pred HHhCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 142 KEFGVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 142 ~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
...+..++. .+..|-+.+++.+++.+..
T Consensus 150 k~~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 150 KKLGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred hhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 333443333 5566666888888877654
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.46 E-value=1.5e-06 Score=68.05 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=56.7
Q ss_pred EEEEEEEecCChhhhccc----ccc--------ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028546 57 TVRLQLWDTAGQERFRSL----IPS--------YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~----~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 124 (207)
.+.+.++||||....... ... .-...+..++|+|++.. .+.+... ....... .+.-+|+||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~~---~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEAV---GLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhhC---CCCEEEEECC
Confidence 468999999995432211 111 11246789999999853 2333322 2222221 2457899999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
|.... .-.+...+...+.|+.+++ +|++++++.
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 95322 2234555667799998888 777776653
No 372
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.44 E-value=1.2e-06 Score=61.84 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=37.8
Q ss_pred EEEEEEEecCChhhhcccccc--------ccccCCEEEEEEECCChHHH-HHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 57 TVRLQLWDTAGQERFRSLIPS--------YIRDSSVAVIVYDVANRQSF-LNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
..+..++|++|..+....... ..-..|.+++++|+.+.... .....+..++... + ++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d---~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---D---RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---C---EEEEecccC
Confidence 357889999996543332221 23458899999998743221 1222233444322 2 789999995
No 373
>PRK01889 GTPase RsgA; Reviewed
Probab=98.44 E-value=1.1e-06 Score=70.10 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=59.0
Q ss_pred cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546 79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN 158 (207)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (207)
+.++|.+++|+++...-....+.+++..+... +++.++|+||+|+.++.+...+..... ..+++++.+|+.++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 57899999999997444444556665555443 467789999999975421111112211 3478999999999999
Q ss_pred hHHHHHHHH
Q 028546 159 IKPLFRKIA 167 (207)
Q Consensus 159 i~~~~~~l~ 167 (207)
++++..+|.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 999999885
No 374
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=1.8e-07 Score=71.09 Aligned_cols=113 Identities=18% Similarity=0.171 Sum_probs=76.1
Q ss_pred EEEEEecCChhhhccccccccccCCEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-
Q 028546 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS- 133 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~- 133 (207)
.+.|+|+||++-.-.....-..-.|++++++..++ +++-+.+.. .+.+.. +.++++-||+|+..+.+..
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa-veiM~L-----khiiilQNKiDli~e~~A~e 199 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA-VEIMKL-----KHIIILQNKIDLIKESQALE 199 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH-HHHhhh-----ceEEEEechhhhhhHHHHHH
Confidence 47899999988654444333345788899988875 344444322 222221 4589999999997654432
Q ss_pred -HHHHHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546 134 -IEEGDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177 (207)
Q Consensus 134 -~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~ 177 (207)
.+.+..+... .+.+++++||.-.-|++-+.++|...+..-....
T Consensus 200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 3334444443 2579999999999999999999999987554333
No 375
>PRK13796 GTPase YqeH; Provisional
Probab=98.42 E-value=2e-06 Score=68.88 Aligned_cols=94 Identities=31% Similarity=0.443 Sum_probs=61.4
Q ss_pred hhhccccccccccCC-EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH----HHHHHH
Q 028546 69 ERFRSLIPSYIRDSS-VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG----DGKAKE 143 (207)
Q Consensus 69 ~~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~ 143 (207)
++|....... ...+ .+++|+|+.+.. ..|...+.+... +.|+++|+||+|+.+. ....+.+ ...+..
T Consensus 57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHh
Confidence 3455544433 4445 999999997632 223333433332 5789999999999643 2223333 233444
Q ss_pred hCC---eEEEEecCCCCChHHHHHHHHHHc
Q 028546 144 FGV---MFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 144 ~~~---~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
.++ .++.+||+++.|++++++.|.+..
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 565 689999999999999999998764
No 376
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.41 E-value=4.2e-07 Score=70.47 Aligned_cols=101 Identities=22% Similarity=0.208 Sum_probs=65.2
Q ss_pred cCChh-hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 028546 65 TAGQE-RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE 143 (207)
Q Consensus 65 ~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 143 (207)
.||+. +-.......+..+|++|+|+|+..+.+... .++..+.. +.|+++|+||+|+.+.... ..... ....
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~~-~~~~~-~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEVT-KKWIE-YFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHHH-HHHHH-HHHH
Confidence 45543 223345566789999999999986543322 11222211 4789999999998543111 11111 1223
Q ss_pred hCCeEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546 144 FGVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 144 ~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
.+.+++.+|+.++.|++++.+.+.+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 357789999999999999999998887543
No 377
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=7.4e-07 Score=73.42 Aligned_cols=119 Identities=22% Similarity=0.254 Sum_probs=85.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-----C-----------CccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-----D-----------TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (207)
+.-+|.+..+..+||||+=++.+...- . ....+..++.+......+....+++.++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 346788999999999999998762111 0 001123345555555555555689999999999999
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
.-.+...++--|++|+|+++..+-.-+...-|.+.-+ + ++|.+.++||+|.....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r-y---~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR-Y---NVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh-c---CCCeEEEEehhhhcCCC
Confidence 9999999999999999999986544455555655443 3 59999999999975543
No 378
>PRK12288 GTPase RsgA; Reviewed
Probab=98.38 E-value=9.6e-07 Score=69.99 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=35.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCc-ccc---ccce--eeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546 12 LVFLGDQSVGKTSIITRFMYDKFDTT-YQA---TIGI--DFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~~~~~-~~~---~~~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (207)
++|+|.+|+|||||||+|++.....+ ..+ ..+. +.....+.+.+. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 78999999999999999997654211 111 1111 112223344432 2489999965543
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=98.38 E-value=6.2e-07 Score=70.56 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=55.8
Q ss_pred EEEEEEecCChhhhcc----ccccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
+.+.++||+|...... ....+ ..+.|.++||+|+........ ....+.... .+--+++||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~~---~~~giIlTKlD~~~~-- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEAV---GIDGVILTKVDADAK-- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhcC---CCCEEEEeeecCCCC--
Confidence 5699999999543211 11111 235789999999975432222 122222221 234788999996322
Q ss_pred CCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 132 VSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
.-.+...+...+.|+.+++ +|.+++++.
T Consensus 295 --~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 --GGAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 2233445556788888887 788887664
No 380
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.36 E-value=1.9e-07 Score=68.40 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=73.8
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCChH----------HHHHHHHHHHHHHHh-cCCCCeEEEEEeCCC
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ----------SFLNTSRWIEEVRTE-RGGDVIIVLVGNKTD 125 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D 125 (207)
.+.+.+.|.+|+..-+..|...+.++..++|++.+++.+ .++.-+.++.-+... .-.+.++|+++||.|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 356778899998888888888888888888877766422 222222222222211 124678999999999
Q ss_pred CCCCCC----------------CCHHHHHHHHHHh----CC------eEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 126 LVDKRQ----------------VSIEEGDGKAKEF----GV------MFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 126 ~~~~~~----------------~~~~~~~~~~~~~----~~------~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
+.++.. -..+.++.+..++ +. --.++.|.+.+|+..+|..+.+.+..
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 876532 1233344443332 21 12467788889999999998887653
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.35 E-value=2e-06 Score=65.99 Aligned_cols=95 Identities=16% Similarity=0.023 Sum_probs=56.5
Q ss_pred EEEEEEEecCChhhhccccc-------cc-----cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028546 57 TVRLQLWDTAGQERFRSLIP-------SY-----IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~-------~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 124 (207)
.+.+.++||||......... .. -..+|.+++|+|++.. .+.+. ....+.+.. .+--+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---CCCEEEEEcc
Confidence 36899999999653222111 11 1248999999999743 22222 223333222 2357899999
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
|.... .-.+.......+.|+.+++ +|++++++.
T Consensus 228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 96332 2233445556688888887 777766553
No 382
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.34 E-value=1.3e-06 Score=68.66 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=41.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (207)
..++++|+|-|++|||||||+|.+.... ....| +++.....+.+.. .+.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCc
Confidence 3588999999999999999999988773 33344 4444444444555 4889999994
No 383
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.27 E-value=4.4e-06 Score=64.03 Aligned_cols=109 Identities=20% Similarity=0.241 Sum_probs=79.2
Q ss_pred cccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546 73 SLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET 151 (207)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (207)
.+.+.-+.+.|-+++|+.+.+|+ +...+.+++...... ++..++|+||+|+.++.+....+.......++++++.+
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 34444556788899999998876 344455555544433 46677889999998776655455666777789999999
Q ss_pred ecCCCCChHHHHHHHHHHcCCCccCcccccccc
Q 028546 152 SAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (207)
|++++++++++..+|...+.-.-.++--.++..
T Consensus 148 s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSL 180 (301)
T COG1162 148 SAKNGDGLEELAELLAGKITVLLGQSGVGKSTL 180 (301)
T ss_pred cCcCcccHHHHHHHhcCCeEEEECCCCCcHHHH
Confidence 999999999999999888776666665555433
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.26 E-value=6.5e-06 Score=66.69 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=38.6
Q ss_pred EEEEEEEecCChhhhcccc----ccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 57 TVRLQLWDTAGQERFRSLI----PSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
.+.+.|+||+|........ ..+ ..+.+-++||+|+..++....+. ..+... -.+.-+|+||.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~ 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDG 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccC
Confidence 4689999999954332211 111 23578899999997543333322 222222 1356899999996
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.25 E-value=2.2e-06 Score=64.93 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-.++++|.+|+|||||+|++.+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4688999999999999999997643
No 386
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2.9e-05 Score=57.76 Aligned_cols=158 Identities=18% Similarity=0.256 Sum_probs=100.5
Q ss_pred ceeEEEEcCCCC--CHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe--EEEEEEEecCChhhhccccccccccCCE
Q 028546 9 KYKLVFLGDQSV--GKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 9 ~~~i~v~G~~~s--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+..++|+|-.|+ ||.+|+.+|....|..+......+.+..+++.-... .+.+.+.-.. .+.+.. ......-.-+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lp-n~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLP-NAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccC-Ccccccceee
Confidence 356789999998 999999999999887776666666677776532221 1233332211 112211 1222234568
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--------------CC-------------------
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK--------------RQ------------------- 131 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~--------------~~------------------- 131 (207)
+++|||.+...++..++.|+.......- -..+.++||.|.... ..
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 8999999999999999999874322111 224677899985421 00
Q ss_pred -----------CCHHHHHHHHHHhCCeEEEEecCCC------------CChHHHHHHHHHHc
Q 028546 132 -----------VSIEEGDGKAKEFGVMFIETSAKAG------------FNIKPLFRKIAAAL 170 (207)
Q Consensus 132 -----------~~~~~~~~~~~~~~~~~~~~s~~~~------------~~i~~~~~~l~~~~ 170 (207)
........++...++.+++.++.+. .|++.+|..|...+
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 0123345566677899999888443 37999999887754
No 387
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.23 E-value=5.6e-06 Score=47.12 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=32.5
Q ss_pred cCCEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546 81 DSSVAVIVYDVAN--RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125 (207)
Q Consensus 81 ~~d~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 125 (207)
-.++++|++|+++ +.+.+.+..++..++..+. +.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 3689999999985 5678888999999999886 589999999998
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=98.23 E-value=2.4e-06 Score=67.86 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC-ccccc-------cceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDT-TYQAT-------IGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
-++|+|++|+|||||||+|++..... ...+. ++.+. ..+.+.+.. .++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~--~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV--ELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee--EEEECCCCc---EEEeCCCccc
Confidence 37999999999999999999764321 11222 22222 333343322 6889999643
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=2.5e-06 Score=65.37 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=37.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (207)
-.+++|+.|+|||||+|+|.+..- +....++.-++.....+.+.+.+ .++||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 467889999999999999986432 22222222233344555665433 57799996543
No 390
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.20 E-value=4.7e-06 Score=60.29 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=68.1
Q ss_pred EEEEEecCChhhhcccc---cccc---cc---CCEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 59 RLQLWDTAGQERFRSLI---PSYI---RD---SSVAVIVYDVAN-RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~~---~~~~---~~---~d~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
.+.++|+||+-...+-. +.++ ++ --+++|+.|..= .++...+...+..+..-..-.+|-|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 58899999976543321 1111 11 125566666541 11222222222222222222588899999999864
Q ss_pred CCC--------------------CC---------HHHHHHHHHHhCC-eEEEEecCCCCChHHHHHHHHHHcCCCccCcc
Q 028546 129 KRQ--------------------VS---------IEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRKIAAALPGMETLSS 178 (207)
Q Consensus 129 ~~~--------------------~~---------~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~~ 178 (207)
... .. ...+..+...+++ .+++....+-++++.++..|-..++-.+...+
T Consensus 179 ~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~Ed~E~ 258 (273)
T KOG1534|consen 179 DKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGEDLEP 258 (273)
T ss_pred hhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhccccCc
Confidence 411 00 0111222233444 68899999999999999998888776655555
Q ss_pred ccc
Q 028546 179 TKQ 181 (207)
Q Consensus 179 ~~~ 181 (207)
+.+
T Consensus 259 k~~ 261 (273)
T KOG1534|consen 259 KEP 261 (273)
T ss_pred cCC
Confidence 444
No 391
>PRK13695 putative NTPase; Provisional
Probab=98.18 E-value=6.5e-05 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
++|+++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
No 392
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=98.17 E-value=0.00014 Score=51.23 Aligned_cols=146 Identities=9% Similarity=0.062 Sum_probs=105.6
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (207)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (207)
+.++......|++||..+.++..|..++....-. .++.+.-....+.. ......=..
T Consensus 8 ~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------------------~~l~Vh~a~sLPLp-~e~~~lRpr 64 (176)
T PF11111_consen 8 DKLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------------------FKLKVHLAKSLPLP-SENNNLRPR 64 (176)
T ss_pred ccCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------------------eeEEEEEeccCCCc-ccccCCCce
Confidence 4566677789999999999999999999863210 11111111111100 001111246
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (207)
.|.++|++|.....++..++.-+..+...+-.. -++++++-....+...+..+++.+++..+.++++.+.-...++...
T Consensus 65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 799999999999999999988888775544322 2667777777767788999999999999999999999999989888
Q ss_pred HHHHHHHHcC
Q 028546 162 LFRKIAAALP 171 (207)
Q Consensus 162 ~~~~l~~~~~ 171 (207)
+-+.|.+.++
T Consensus 144 lAqRLL~~lq 153 (176)
T PF11111_consen 144 LAQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 393
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.16 E-value=5.2e-06 Score=66.38 Aligned_cols=55 Identities=25% Similarity=0.356 Sum_probs=37.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (207)
.+++++|.+|+|||||+|++++... .....+.++.+ ...+.+++ .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCCC
Confidence 4899999999999999999997532 22333444433 33344433 35799999954
No 394
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=9.5e-06 Score=72.70 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=67.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeee-EEEEEECCeEEEEEEEecCChh--------hhccccccc---
Q 028546 12 LVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFL-SKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSY--- 78 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~--- 78 (207)
-+|+|++|+||||++.. .+.+|+-.. ....+.... ...++.--. -.-.++||.|.- .....|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~-deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFT-DEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccc-cceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 47999999999999863 333332111 001111100 111111111 156788999821 122233333
Q ss_pred ------cccCCEEEEEEECCC-----hHH----HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 79 ------IRDSSVAVIVYDVAN-----RQS----FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 79 ------~~~~d~~ilv~d~~~-----~~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
.+-.+++|+.+|+.+ +.. ...+...++++.....-..||+|++||.|+..-.
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccH
Confidence 345799999999974 111 2234555666777777789999999999987543
No 395
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.14 E-value=3.4e-05 Score=55.23 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=46.1
Q ss_pred EEEEEEEecCChhhh----ccccccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 57 TVRLQLWDTAGQERF----RSLIPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~----~~~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
.+.+.++|++|...+ ......+ ....+.+++|+|+..... ...+...+....+ ...+|+||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence 356889999996422 1111111 134899999999975332 2233344433322 356778999964332
Q ss_pred CCCHHHHHHHHHHhCCeEEE
Q 028546 131 QVSIEEGDGKAKEFGVMFIE 150 (207)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~ 150 (207)
. .+...+...++++..
T Consensus 156 g----~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 G----AALSIRAVTGKPIKF 171 (173)
T ss_pred c----hhhhhHHHHCcCeEe
Confidence 2 122255556666543
No 396
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=7e-06 Score=66.63 Aligned_cols=113 Identities=20% Similarity=0.300 Sum_probs=77.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc------------CCCCCccc--cccceeeeEEEEEE----------------CCeEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY------------DKFDTTYQ--ATIGIDFLSKTMYL----------------EDRTVR 59 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~------------~~~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~ 59 (207)
-++.|+.+...|||||-..|+. .+|..++. ...++.+....+.. ++...-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 5788999999999999998872 23322222 12223333322221 234567
Q ss_pred EEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
+.++|.||+-+|.+.....++-.|+.++|+|.-++--.++-.-+.+.+.++ +..++++||+|.
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DR 162 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDR 162 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhH
Confidence 899999999999999999999999999999998654444444444555554 334688999994
No 397
>PRK13796 GTPase YqeH; Provisional
Probab=98.13 E-value=4.7e-06 Score=66.74 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=36.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (207)
.++.++|.+++|||||+|+|++... .....|++|.+. ..+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999985431 123334444433 33334432 4789999953
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=1.7e-05 Score=63.30 Aligned_cols=139 Identities=11% Similarity=0.071 Sum_probs=69.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC---ccccccceeee----------------EEEEEEC-----------CeEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDT---TYQATIGIDFL----------------SKTMYLE-----------DRTVR 59 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~----------------~~~~~~~-----------~~~~~ 59 (207)
--++++|++|+||||++..|...-... ......+.+.+ ....... -....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 468899999999999999885321100 00000000000 0000010 02347
Q ss_pred EEEEecCChhhhcccc----ccc--cccCCEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCCC
Q 028546 60 LQLWDTAGQERFRSLI----PSY--IRDSSVAVIVYDVAN-RQSFLNTSRWIEEVRTERGGD--VIIVLVGNKTDLVDKR 130 (207)
Q Consensus 60 ~~i~D~~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~~ 130 (207)
+.++||+|........ ..+ .....-.+||++++. .+.+..+...+......-... .+--+|++|.|...
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-- 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-- 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence 8999999955332211 111 123456689999975 333333333333221100000 12367889999633
Q ss_pred CCCHHHHHHHHHHhCCeEEEEe
Q 028546 131 QVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s 152 (207)
..-.+...+...+.++.+++
T Consensus 296 --~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 --NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred --CccHHHHHHHHHCcCeEEEe
Confidence 23344556666777765554
No 399
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.11 E-value=0.0001 Score=53.07 Aligned_cols=85 Identities=21% Similarity=0.214 Sum_probs=57.3
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE 135 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 135 (207)
..+.+.++|+|+... ......+..+|.+++++..+. .+...+..+++.+... +.|+.+|+|+.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 357899999996432 233445688999999998874 4555666666655543 4678899999996322 234
Q ss_pred HHHHHHHHhCCeEE
Q 028546 136 EGDGKAKEFGVMFI 149 (207)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (207)
+.+.....++++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 55666677777654
No 400
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.05 E-value=1.1e-05 Score=62.59 Aligned_cols=59 Identities=24% Similarity=0.189 Sum_probs=36.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcc-c-----cccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTY-Q-----ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (207)
-.++++|++|+|||||+|++++....... . .+..+......+...+. ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 56899999999999999999976543221 1 11112222233344332 258999997554
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.05 E-value=8.1e-05 Score=58.51 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=51.4
Q ss_pred EEEEEEecCChhhhcccccccc--------ccCCEEEEEEECCChHHHH-HHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 58 VRLQLWDTAGQERFRSLIPSYI--------RDSSVAVIVYDVANRQSFL-NTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
....++++.|..........+. -..+.+|.|+|+.+..... .......++... + ++++||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D---~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---D---RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---C---EEEEeccccCC
Confidence 4678889988665444333221 1358899999997532211 111112223221 2 88999999876
Q ss_pred CCCCCHHHHHHHHHHhC--CeEEEEecCCCCChHHHH
Q 028546 129 KRQVSIEEGDGKAKEFG--VMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~ 163 (207)
+. +.++...+.++ ++++.++ ........++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 42 44555555554 4566554 2223444444
No 402
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=1.3e-05 Score=60.38 Aligned_cols=119 Identities=15% Similarity=0.312 Sum_probs=71.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc----ccceeeeEEEEEECCeEEEEEEEecCChhh-------hcc---
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA----TIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRS--- 73 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~--- 73 (207)
-.++|+.+|..|.|||||+++|+.-.+..+..+ ..............+..+++++.||.|..+ |..
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 358999999999999999999998888544332 222222222333456667899999998322 111
Q ss_pred ----ccccc-------------c--ccCCEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 74 ----LIPSY-------------I--RDSSVAVIVYDVANRQSFLNTSR-WIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 74 ----~~~~~-------------~--~~~d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
....| + ...++.+|.+..+. .++..+.. .+..+.. ++.+|-++.|.|.....+
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds----kVNIIPvIAKaDtisK~e 193 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS----KVNIIPVIAKADTISKEE 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh----hhhhHHHHHHhhhhhHHH
Confidence 01111 1 24567777777774 33433321 1222322 456777888999765444
No 403
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.02 E-value=3.3e-05 Score=56.98 Aligned_cols=63 Identities=30% Similarity=0.356 Sum_probs=41.0
Q ss_pred EEEEEEec-CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 58 VRLQLWDT-AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 58 ~~~~i~D~-~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
+.+.++|| +|.+.|.. ...+++|.+|.|+|.+. .++....+. ..+....+ -.++.+|+||.|-
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg-~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELG-IKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhC-CceEEEEEeeccc
Confidence 35667777 45544433 33578999999999985 455554433 33333333 3789999999995
No 404
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=8.9e-05 Score=61.48 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=48.0
Q ss_pred EEEEEEEecCChhhhccc-------cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 57 TVRLQLWDTAGQERFRSL-------IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
.+.+.|+||+|....... +... . ....++|++.+. +...+...+..+... .+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc-
Confidence 368999999995432211 1111 1 234577777763 234444444444332 45679999999622
Q ss_pred CCCCHHHHHHHHHHhCCeEEEEe
Q 028546 130 RQVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s 152 (207)
....+.......+.++.+++
T Consensus 499 ---~lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 499 ---RFGSALSVVVDHQMPITWVT 518 (559)
T ss_pred ---chhHHHHHHHHhCCCEEEEe
Confidence 23455666667788776554
No 405
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.01 E-value=3.2e-05 Score=53.95 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=37.2
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 125 (207)
.+.+.|+||+|... ....++..+|-+|++....-.+.+..++- . +.... =++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~-~~~~~-----~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--G-IMEIA-----DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--h-Hhhhc-----CEEEEeCCC
Confidence 46899999998542 22347889999999998873333222221 2 22222 288999997
No 406
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.99 E-value=0.00013 Score=57.27 Aligned_cols=97 Identities=24% Similarity=0.236 Sum_probs=55.9
Q ss_pred EEEEEEecCChhhhccccccc--------cccCCEEEEEEECCChHHHHH-H-HHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 58 VRLQLWDTAGQERFRSLIPSY--------IRDSSVAVIVYDVANRQSFLN-T-SRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~-~-~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
....++++.|..........+ .-..|++|-|+|+.+-..... + .....++... =++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 567888888855542222222 124578999999985322211 1 2222233221 28999999998
Q ss_pred CCCCCCHHHHHHHHHHhC--CeEEEEecCCCCChHHHH
Q 028546 128 DKRQVSIEEGDGKAKEFG--VMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~ 163 (207)
++.+ .+..+....+++ .+++.++. .+....+++
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 7764 455566666665 46777777 333443333
No 407
>PRK00098 GTPase RsgA; Reviewed
Probab=97.97 E-value=1.7e-05 Score=61.84 Aligned_cols=58 Identities=22% Similarity=0.147 Sum_probs=35.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccc---cc--eeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTY-QAT---IG--IDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~---~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
..++++|++|+|||||+|+|.+....... .+. .+ ++.....+.+.+. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 46889999999999999999876543221 111 11 1112223334432 37889999643
No 408
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.93 E-value=5.3e-05 Score=54.00 Aligned_cols=135 Identities=17% Similarity=0.249 Sum_probs=63.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEec-CChh--------------------
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQE-------------------- 69 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~-------------------- 69 (207)
+|.+.|++|+|||||+.+++..--.. ..+..+ +.......++..+-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987432100 011111 11222223333344555555 2211
Q ss_pred --hhccc----cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC-CCCCCCCCCHHHHHHHHH
Q 028546 70 --RFRSL----IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT-DLVDKRQVSIEEGDGKAK 142 (207)
Q Consensus 70 --~~~~~----~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~ 142 (207)
.+... ....+..+| ++|+|--.+-.+. ...+.+.+......++|++.++.+. +. .....+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 11111 111123444 7777776432111 2334444555555578888888766 31 12344555
Q ss_pred HhCCeEEEEecCCCCCh
Q 028546 143 EFGVMFIETSAKAGFNI 159 (207)
Q Consensus 143 ~~~~~~~~~s~~~~~~i 159 (207)
..+..++.++..+.+.+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 66788888877766554
No 409
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.92 E-value=0.00037 Score=57.54 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=53.6
Q ss_pred EEEEEEecCChh-------------hhccccccccccCCEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546 58 VRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAVIVYDVANRQS-FLNTSRWIEEVRTERGGDVIIVLVGNK 123 (207)
Q Consensus 58 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK 123 (207)
.+..++|.||.- ..-.+...|+.+.+++|+|+--...+. -..+..+...+ .+...-.|+|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~---DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQM---DPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhc---CCCCCeeEEEEee
Confidence 378899999922 223355678899999999985432211 11122222222 2335568999999
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q 028546 124 TDLVDKRQVSIEEGDGKAK 142 (207)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~ 142 (207)
.|+.+..-...+.++++..
T Consensus 489 VDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred cchhhhccCCHHHHHHHHh
Confidence 9998887888888877765
No 410
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.92 E-value=3.1e-05 Score=63.20 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=47.8
Q ss_pred EEEEEEecCChhhhcccc----cc--ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRSLI----PS--YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
..+.++||+|........ .. .+..+|.+++|+|++... ........+.... ...-+|+||.|... .
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a--~ 247 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA--K 247 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC--c
Confidence 378999999965432211 11 134689999999997642 2222223332221 12467889999521 1
Q ss_pred CCHHHHHHHHHHhCCeEEEEec
Q 028546 132 VSIEEGDGKAKEFGVMFIETSA 153 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s~ 153 (207)
.-.+.......+.|+.+++.
T Consensus 248 --~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 --GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred --ccHHHHHHHHHCcCEEEEec
Confidence 22334455566776655543
No 411
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.91 E-value=2.3e-05 Score=56.44 Aligned_cols=81 Identities=26% Similarity=0.224 Sum_probs=42.2
Q ss_pred EEEEEEecCChhhhcccc--cc---ccccCCEEEEEEECCChHHHHHHHHH-HHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRSLI--PS---YIRDSSVAVIVYDVANRQSFLNTSRW-IEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~--~~---~~~~~d~~ilv~d~~~~~s~~~~~~~-~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
....++++.|........ .. ..-..+.+|.|+|+.+-......... ..++. .. + ++++||+|+.++.+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-~A--D---vIvlnK~D~~~~~~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-FA--D---VIVLNKIDLVSDEQ 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-T---S---EEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch-hc--C---EEEEeccccCChhh
Confidence 567888888855443330 00 02356899999999764222333222 22232 11 2 89999999876552
Q ss_pred CCHHHHHHHHHHhC
Q 028546 132 VSIEEGDGKAKEFG 145 (207)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (207)
..+..++..+..+
T Consensus 159 -~i~~~~~~ir~ln 171 (178)
T PF02492_consen 159 -KIERVREMIRELN 171 (178)
T ss_dssp --HHHHHHHHHHH-
T ss_pred -HHHHHHHHHHHHC
Confidence 2244444555443
No 412
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=2.4e-05 Score=62.58 Aligned_cols=85 Identities=15% Similarity=0.017 Sum_probs=49.0
Q ss_pred EEEEEEecCChhhhcc----cccccc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRS----LIPSYI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
+.+.|+||+|...... .+..++ ...+.++||+|++.. ...+...+..+... .+--+|++|.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence 5799999999543211 112222 235778999998632 23333333444321 234688999996432
Q ss_pred CCHHHHHHHHHHhCCeEEEEe
Q 028546 132 VSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (207)
.-.+...+...++|+.+++
T Consensus 393 --~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEe
Confidence 3345566667788765554
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=8.8e-05 Score=59.12 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=48.3
Q ss_pred EEEEEEecCChhhhcc----cccccc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRS----LIPSYI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
+.+.|+||+|...... ....+. -..+.+++|.+++ .....+...+..+.. -.+--+|+||.|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~----l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE----IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence 6899999999643222 112222 2456777888775 223333333333221 123478899999532
Q ss_pred CCHHHHHHHHHHhCCeEEEEe
Q 028546 132 VSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (207)
..-.+...+...+.|+.+++
T Consensus 357 -~~G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT 376 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe
Confidence 23445666677788776655
No 414
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.82 E-value=3.1e-05 Score=56.62 Aligned_cols=85 Identities=19% Similarity=0.071 Sum_probs=48.4
Q ss_pred EEEEEEecCChhhhcc----ccccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
+.+.++||+|...... .+..+ ....+-+++|.+++... +.+... .......+ +--++++|.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~-~~~~~~~~---~~~lIlTKlDet~~-- 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQA-LAFYEAFG---IDGLILTKLDETAR-- 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHH-HHHHHHSS---TCEEEEESTTSSST--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHH-HHHhhccc---CceEEEEeecCCCC--
Confidence 4699999999543222 11111 12578899999998532 333322 22222222 23577999996322
Q ss_pred CCHHHHHHHHHHhCCeEEEEe
Q 028546 132 VSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (207)
.-.+...+...+.++-.++
T Consensus 156 --~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 156 --LGALLSLAYESGLPISYIT 174 (196)
T ss_dssp --THHHHHHHHHHTSEEEEEE
T ss_pred --cccceeHHHHhCCCeEEEE
Confidence 3445666777888876655
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=97.78 E-value=0.0003 Score=57.49 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=48.2
Q ss_pred EEEEEEEecCChhhhcc----ccccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 57 TVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
.+.+.|+||+|...... ....+ .-..+.+++|+|+... +........+.... ...-+|+||.|-. .+
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~-~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGD-AR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCc-cc
Confidence 36799999999543211 11111 1257788999998753 23333333343322 1246788999952 21
Q ss_pred CCCHHHHHHHHHHhCCeEEEEec
Q 028546 131 QVSIEEGDGKAKEFGVMFIETSA 153 (207)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~ 153 (207)
.-.+.......+.|+.++..
T Consensus 256 ---gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 ---GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 12245556667777665543
No 416
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.78 E-value=0.00013 Score=50.25 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=60.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCC
Q 028546 14 FLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN 93 (207)
Q Consensus 14 v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 93 (207)
.-|..|+||||+--.+-..-.. ...+..-.+.. .......+.+.++|+|+.. .......+..+|.++++.+.+-
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 3478899999987655321100 00000001100 0001111689999998742 3334567889999999999874
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 94 RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 94 ~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
.++......++.+.... ...++.+|+|+.+.
T Consensus 79 -~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 -TSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred -hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 45555555555554433 24568899999974
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.00024 Score=58.06 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=48.1
Q ss_pred EEEEEEecCChhhhc----cccccccc---cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFR----SLIPSYIR---DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
+.+.|+||+|..... .....++. ...-+++|++++.. ...+...+..+... .+--+++||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----PLDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----CCCEEEEeccccccc-
Confidence 579999999954322 12222333 33467888888732 23333333333211 123688999996322
Q ss_pred CCCHHHHHHHHHHhCCeEEEEe
Q 028546 131 QVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s 152 (207)
...+.......+.++.+++
T Consensus 373 ---~G~i~~~~~~~~lPv~yit 391 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLT 391 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEe
Confidence 3345666777788776554
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.70 E-value=6.7e-05 Score=61.15 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=49.2
Q ss_pred EEEEEEEecCChhhhccc----ccc--ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 57 TVRLQLWDTAGQERFRSL----IPS--YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
.+.+.|+||||....... ... ..-..|.++||+|+...+ ........+.... ...-+|+||.|-...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~- 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDAR- 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCccc-
Confidence 357999999995332111 111 123578899999997543 3333333343322 224677999995211
Q ss_pred CCCHHHHHHHHHHhCCeEEEEec
Q 028546 131 QVSIEEGDGKAKEFGVMFIETSA 153 (207)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s~ 153 (207)
.-.+.......+.|+.++..
T Consensus 255 ---~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 ---GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 22255566667777665543
No 419
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00018 Score=58.19 Aligned_cols=134 Identities=21% Similarity=0.202 Sum_probs=69.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC-------C-----CCccc----------cccceeeeEEE-E-----EECCeEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDK-------F-----DTTYQ----------ATIGIDFLSKT-M-----YLEDRTVRL 60 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~-------~-----~~~~~----------~~~~~~~~~~~-~-----~~~~~~~~~ 60 (207)
..-++++|++|+||||++..|.... + +..+. ...+....... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999998875311 1 00000 00111111100 0 001124578
Q ss_pred EEEecCChhhh----ccccccccc-----cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 61 QLWDTAGQERF----RSLIPSYIR-----DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 61 ~i~D~~G~~~~----~~~~~~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
.++||+|.... ...+..++. ...-.+||+|++... +.+...+..+.. --+--+|++|.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~-- 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADF-- 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence 99999995421 112222222 234678999998532 333333333321 1234788999995322
Q ss_pred CCHHHHHHHHHHhCCeEEEEe
Q 028546 132 VSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (207)
.-.+...+...+.|+.+++
T Consensus 375 --~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 375 --LGSFLELADTYSKSFTYLS 393 (432)
T ss_pred --ccHHHHHHHHHCCCEEEEe
Confidence 3335556667787765554
No 420
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.68 E-value=0.00026 Score=46.12 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=49.3
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 12 LVFLG-DQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 12 i~v~G-~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
|+|.| ..|+||||+...+-..-.. ...+..-.+ .+.. +.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d-------~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID-------LDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe-------CCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56676 5689999988765422111 111111111 1211 68999999985432 23366778999999998
Q ss_pred CCChHHHHHHHHHHH
Q 028546 91 VANRQSFLNTSRWIE 105 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~ 105 (207)
.+. .++..+.++++
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 864 55666666555
No 421
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.67 E-value=8.9e-05 Score=56.90 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=38.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (207)
.+++++|+|-|++|||||+|++..... .....++.+..+.... .+... -.+.++||||.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~i-ri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERI-RISHR-PPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhhe-EeccC-CceEEecCCCc
Confidence 468999999999999999998864333 2233344444443332 22222 25788899993
No 422
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.62 E-value=0.0012 Score=52.91 Aligned_cols=108 Identities=16% Similarity=0.064 Sum_probs=60.7
Q ss_pred EEEEEEecCChhhhcc----cccccccc--CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRS----LIPSYIRD--SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
+.+.++||.|...+.. ....++.. ..-+.||++++. ....+++.+..++.. ..--++++|.|..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~----~i~~~I~TKlDET---- 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLF----PIDGLIFTKLDET---- 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccC----CcceeEEEccccc----
Confidence 5799999999654333 23333333 345677888873 356667666666543 2236888999952
Q ss_pred CCHHHHHHHHHHhCCeEEEEe--cCCCCChHH-HHHHHHHHcCCCcc
Q 028546 132 VSIEEGDGKAKEFGVMFIETS--AKAGFNIKP-LFRKIAAALPGMET 175 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s--~~~~~~i~~-~~~~l~~~~~~~~~ 175 (207)
...-.....+...+.++-+++ ..=.+++.. --+||++.+.+...
T Consensus 352 ~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~ 398 (407)
T COG1419 352 TSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA 398 (407)
T ss_pred CchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence 234445555666666654443 222333322 23456666554433
No 423
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00028 Score=57.32 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=47.6
Q ss_pred EEEEEEecCChhhhc----ccccccc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFR----SLIPSYI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
..+.++||+|..... .....+. ...+-.+||+|++.. .+.+..++..+.. --+--+|++|.|....
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~----~~~~~~I~TKlDEt~~-- 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG----HGIHGCIITKVDEAAS-- 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeeeCCCC--
Confidence 468999999954321 1112221 224567899999832 2333333333322 1234688999996332
Q ss_pred CCHHHHHHHHHHhCCeEEEEe
Q 028546 132 VSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (207)
.-.+...+...++++.+++
T Consensus 342 --~G~~l~~~~~~~lPi~yvt 360 (420)
T PRK14721 342 --LGIALDAVIRRKLVLHYVT 360 (420)
T ss_pred --ccHHHHHHHHhCCCEEEEE
Confidence 3344556667788776655
No 424
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00063 Score=54.83 Aligned_cols=86 Identities=9% Similarity=-0.022 Sum_probs=49.2
Q ss_pred EEEEEEEecCChhhhcc----cccccccc--CC-EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 57 TVRLQLWDTAGQERFRS----LIPSYIRD--SS-VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
.+.+.++||+|...... ....++.. .+ -.+||+|++.. ...+.+.+..+... .+--++++|.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence 36799999999543221 11222222 23 58899999853 34444444443321 234788999995322
Q ss_pred CCCCHHHHHHHHHHhCCeEEEEe
Q 028546 130 RQVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s 152 (207)
.-.+...+...+.|+.+++
T Consensus 328 ----~G~~l~~~~~~~~Pi~yit 346 (388)
T PRK12723 328 ----VGNLISLIYEMRKEVSYVT 346 (388)
T ss_pred ----chHHHHHHHHHCCCEEEEe
Confidence 3344556667777765554
No 425
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.00044 Score=53.00 Aligned_cols=86 Identities=15% Similarity=0.011 Sum_probs=49.6
Q ss_pred EEEEEEEecCChhhhcc----cccccc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 57 TVRLQLWDTAGQERFRS----LIPSYI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
.+.+.++||+|...... .+..++ ...+-++||+|++.. .+.+..++..+.. -.+--++++|.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~~- 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETAS- 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCCC-
Confidence 36899999999653211 111121 245678999998732 2333333333332 1334788999996432
Q ss_pred CCCHHHHHHHHHHhCCeEEEEe
Q 028546 131 QVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s 152 (207)
.-.+...+...+.|+..++
T Consensus 227 ---~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 227 ---SGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred ---ccHHHHHHHHHCcCEEEEe
Confidence 3344556667787776554
No 426
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.57 E-value=7.8e-05 Score=43.54 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-.+|.|+.|||||||++++..--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999886433
No 427
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.55 E-value=0.00068 Score=43.08 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=43.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-cccccccCCEEEEEEE
Q 028546 12 LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVIVYD 90 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~ilv~d 90 (207)
+++.|..|+||||+...+...--... .+. ..++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999987764321100 011 1111 6889999975432221 1455678899999998
Q ss_pred CCC
Q 028546 91 VAN 93 (207)
Q Consensus 91 ~~~ 93 (207)
...
T Consensus 68 ~~~ 70 (99)
T cd01983 68 PEA 70 (99)
T ss_pred Cch
Confidence 875
No 428
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.00071 Score=46.25 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
.-.+++.|++|+|||+|++.+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 35689999999999999999887643
No 429
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00053 Score=59.49 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=48.1
Q ss_pred EEEEEEecCChhhhcc----ccccc--cccCCEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVAN-RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
+.+.|+||+|...... ..... ....+-.+||+|++. .+.+..+. ..+..... -.+--+|++|.|....
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~-~~i~glIlTKLDEt~~- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAG-EDVDGCIITKLDEATH- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhccc-CCCCEEEEeccCCCCC-
Confidence 4799999999432111 11111 234567899999974 23333333 33322110 0134688999996332
Q ss_pred CCCHHHHHHHHHHhCCeEEEEe
Q 028546 131 QVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~s 152 (207)
.-.+.......++++.+++
T Consensus 339 ---~G~iL~i~~~~~lPI~yit 357 (767)
T PRK14723 339 ---LGPALDTVIRHRLPVHYVS 357 (767)
T ss_pred ---ccHHHHHHHHHCCCeEEEe
Confidence 3344556667788776655
No 430
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.50 E-value=0.0014 Score=52.18 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=52.6
Q ss_pred EEEEEEecCChhhhccccccc-------cccCCEEEEEEECCChHH--H-------H-------------HHH-HHHHHH
Q 028546 58 VRLQLWDTAGQERFRSLIPSY-------IRDSSVAVIVYDVANRQS--F-------L-------------NTS-RWIEEV 107 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~-------~~~~d~~ilv~d~~~~~s--~-------~-------------~~~-~~~~~i 107 (207)
....++++.|..........+ .-..|++|.|+|+.+-.. + . .+. .+..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 467888999865543333222 124678999999974211 0 0 001 112233
Q ss_pred HHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-hC-C-eEEEEecCCCCChHHHHH
Q 028546 108 RTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-FG-V-MFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 108 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~-~~~~~s~~~~~~i~~~~~ 164 (207)
... =++++||+|+.++.++ +..+...+. .+ . +++.+. ........+++
T Consensus 173 ~~A------D~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred HhC------CEEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 221 2899999999766543 334444554 33 2 455554 34455666655
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.48 E-value=0.00046 Score=57.04 Aligned_cols=85 Identities=11% Similarity=0.059 Sum_probs=45.9
Q ss_pred EEEEEEecCChhhhccc---ccccccc---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRSL---IPSYIRD---SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~---~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
..+.++||+|....... ....+.. ..-.+||+|++.. ...+.+....+.. ..+.-+|+||.|...
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet~--- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEAA--- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCcc---
Confidence 36889999994322111 0111111 2337889999742 2333333333322 234467889999532
Q ss_pred CCHHHHHHHHHHhCCeEEEEe
Q 028546 132 VSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (207)
..-.+......+++++.+++
T Consensus 406 -~~G~~l~i~~~~~lPI~yvt 425 (484)
T PRK06995 406 -SLGGALDVVIRYKLPLHYVS 425 (484)
T ss_pred -cchHHHHHHHHHCCCeEEEe
Confidence 23445666777788776665
No 432
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.47 E-value=0.00016 Score=59.00 Aligned_cols=53 Identities=26% Similarity=0.338 Sum_probs=40.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
+.|.+||=|++||||+||+|.+.+.. .+..|+.+-++. ++.+.. .+.+-||||
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQ--Ti~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQ--TIFLSP---SVCLCDCPG 368 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeE--EEEcCC---CceecCCCC
Confidence 88999999999999999999988763 455566665543 333444 577889999
No 433
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.0001 Score=52.98 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
++|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988755
No 434
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.44 E-value=0.00012 Score=49.09 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988654
No 435
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.43 E-value=0.00013 Score=57.80 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=42.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (207)
...+++.|+|-|++||||+||+|...+.... ....|++.....+..+. .+.|+|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 3459999999999999999999998776322 23334444455555555 7889999993
No 436
>PRK08118 topology modulation protein; Reviewed
Probab=97.43 E-value=0.00012 Score=52.12 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
.+|+|+|++|||||||...+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998763
No 437
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.43 E-value=0.00092 Score=43.82 Aligned_cols=62 Identities=18% Similarity=0.085 Sum_probs=42.6
Q ss_pred EEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC-CCeEEEEEeC
Q 028546 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNK 123 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK 123 (207)
.+.++|+|+.... .....+..+|.++++.+.+- .+...+..+++.+...... ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999875432 23456788999999998774 5666677777766655432 3456777774
No 438
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00043 Score=54.78 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=36.3
Q ss_pred eEEEEEEEecCChhhhcccc-ccc-----cccCCEEEEEEECCChHHHHHHHHHHHHH
Q 028546 56 RTVRLQLWDTAGQERFRSLI-PSY-----IRDSSVAVIVYDVANRQSFLNTSRWIEEV 107 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~-~~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~i 107 (207)
..+.+.|.||.|.+...... ... .-+.|-+|||.|++-.+..+.+.+.+..-
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 45789999999966433211 111 34689999999999888777776666554
No 439
>PRK07261 topology modulation protein; Provisional
Probab=97.40 E-value=0.00014 Score=52.10 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
.+|+|+|++|||||||...+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998753
No 440
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.00013 Score=50.31 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
|+++|+||||||||+..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998743
No 441
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.38 E-value=0.00034 Score=50.09 Aligned_cols=45 Identities=36% Similarity=0.367 Sum_probs=27.9
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
|++++|+|+.++.+... ..+...+. ....+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence 78999999987532211 11222211 11225899999999999654
No 442
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.32 E-value=0.0032 Score=45.31 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
=.++++|+.|+|||||++.+.+...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3688999999999999998887643
No 443
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.31 E-value=0.00015 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
||+|+|.+++|||||++.|-..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998754
No 444
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.24 E-value=0.00025 Score=52.63 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++|+|+.|||||||++-+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999776543
No 445
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.22 E-value=0.00034 Score=42.05 Aligned_cols=21 Identities=14% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
|.+.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988755
No 446
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.22 E-value=0.012 Score=42.04 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=51.2
Q ss_pred EEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028546 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD 138 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 138 (207)
.+.|+|+|+.... .....+..+|.+|++.+.+. .++..+..+++.+.... .....+++|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 6999999875332 23445678999999998875 44555555555555421 24567899999853221 122223
Q ss_pred HHHHHhCCeEE
Q 028546 139 GKAKEFGVMFI 149 (207)
Q Consensus 139 ~~~~~~~~~~~ 149 (207)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 34445566654
No 447
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.20 E-value=0.00038 Score=54.89 Aligned_cols=94 Identities=23% Similarity=0.135 Sum_probs=64.3
Q ss_pred ecCChh-hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 028546 64 DTAGQE-RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK 142 (207)
Q Consensus 64 D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 142 (207)
+.||+. ++.......+..+|+++.|+|+-++.+...- .+..... ..|.++|+||.|+.+... .......+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHh
Confidence 446643 5566677788999999999999987654431 1222222 355699999999965544 4555566666
Q ss_pred HhCCeEEEEecCCCCChHHHHH
Q 028546 143 EFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 143 ~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
+.+...+.+++..+.+...+..
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cCCCccEEEEeecccCccchHH
Confidence 6677788888888887766664
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.18 E-value=0.00035 Score=47.80 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57899999999999999888774
No 449
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.15 E-value=0.00048 Score=50.82 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=22.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++..-|+|+|++|||||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 455577999999999999999998753
No 450
>PRK14530 adenylate kinase; Provisional
Probab=97.09 E-value=0.0005 Score=51.07 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
.+|+|+|+|||||||+...|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999874
No 451
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.07 E-value=0.00065 Score=49.78 Aligned_cols=24 Identities=13% Similarity=-0.086 Sum_probs=20.9
Q ss_pred EEecCCCCChHHHHHHHHHHcCCC
Q 028546 150 ETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
++||++.+-+.|+++.+.++..+.
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcC
Confidence 789999999999999999887654
No 452
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.00038 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.-+++.||+|+|||||+.+|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 557888999999999999999775
No 453
>PRK06217 hypothetical protein; Validated
Probab=97.05 E-value=0.00056 Score=49.46 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
.+|+|+|.+|||||||..+|-.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.05 E-value=0.00075 Score=48.17 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
..-+.|+|.+|||||||+.+++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999866
No 455
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.04 E-value=0.00046 Score=51.07 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=37.2
Q ss_pred EEEEEEecCChhhhccc------cccccccCCEEEEEEECC------ChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546 58 VRLQLWDTAGQERFRSL------IPSYIRDSSVAVIVYDVA------NRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~------~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 125 (207)
....++|+|||-++... +-.+++..|.-+.+++.. ++..|-. .++..+..-..-..|-+=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence 36889999997653322 122344566555555554 3544433 222222222112466678889999
Q ss_pred CCC
Q 028546 126 LVD 128 (207)
Q Consensus 126 ~~~ 128 (207)
+..
T Consensus 175 l~~ 177 (290)
T KOG1533|consen 175 LLK 177 (290)
T ss_pred HHH
Confidence 753
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.04 E-value=0.00051 Score=46.24 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988644
No 457
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.00036 Score=52.35 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=85.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccc----
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIR---- 80 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~---- 80 (207)
..++..|++.|..+. +|+|++.+...-... .++...++......-.+ ..--..+|+.+|......+..--++
T Consensus 42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l 118 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGGK--TTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL 118 (363)
T ss_pred ccceeEEEEecCCce--eEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence 456788999998764 899998886653322 33333343333222222 2225688999886654443332222
Q ss_pred cCCEEEEEEECCChHHHHH-HHHHHHHHHHh-------------------------------------cCCCCeEEEEEe
Q 028546 81 DSSVAVIVYDVANRQSFLN-TSRWIEEVRTE-------------------------------------RGGDVIIVLVGN 122 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~-------------------------------------~~~~~p~ivv~n 122 (207)
+.-.+|+|.|++.+..+.. +...++.++.. .+-.+|+++|+.
T Consensus 119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs 198 (363)
T KOG3929|consen 119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS 198 (363)
T ss_pred hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence 2236789999998765533 33333333311 113578999999
Q ss_pred CCCCCCCCCCC-----HHHHHHHHHHhCCeEEEEecCCC
Q 028546 123 KTDLVDKRQVS-----IEEGDGKAKEFGVMFIETSAKAG 156 (207)
Q Consensus 123 K~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~ 156 (207)
|.|.....+.. +.-.+..+..+|...+..|++..
T Consensus 199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe 237 (363)
T KOG3929|consen 199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKME 237 (363)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Confidence 99976554422 33345555566776666666544
No 458
>PRK03839 putative kinase; Provisional
Probab=97.04 E-value=0.00055 Score=49.30 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
+|+++|.|||||||+..++-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La 21 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLA 21 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999875
No 459
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.00051 Score=55.25 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=37.6
Q ss_pred EEEEEEecCChhhhcccccc------ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546 58 VRLQLWDTAGQERFRSLIPS------YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 125 (207)
+.+.|+||+|........-. -.-+.|=++||+|+.-++....+.+.+..-... .-||++|.|
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlD 250 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLD 250 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEccc
Confidence 57999999996544332211 134789999999998766555544433332211 245566666
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.03 E-value=0.0026 Score=46.67 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028546 12 LVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~ 33 (207)
|+|+|++||||||+++.+++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887654
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.03 E-value=0.00064 Score=46.07 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFD 35 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~ 35 (207)
-.++++|++|+||||++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876543
No 462
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.00057 Score=51.57 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++++||.|+|||||+..+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999983
No 463
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.98 E-value=0.0041 Score=48.13 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=59.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh---h---------------
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---F--------------- 71 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~--------------- 71 (207)
.+++++|+++.|||+++++|........ ... .....|..+.+|.... +
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~ 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-------------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR 127 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence 5789999999999999999998664322 111 1123666667765222 1
Q ss_pred ------ccccccccccCCEEEEEEECCCh---HHHHHHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 028546 72 ------RSLIPSYIRDSSVAVIVYDVANR---QSFLNTSRWIEEVRTERG-GDVIIVLVGNKT 124 (207)
Q Consensus 72 ------~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~ 124 (207)
.......++...+=++++|--+. .+.......+..++...+ -++|++.+++.-
T Consensus 128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 11122345677888899987531 223333344444433322 368888887643
No 464
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.97 E-value=0.00033 Score=55.57 Aligned_cols=60 Identities=27% Similarity=0.289 Sum_probs=0.0
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (207)
....+.|-+.++|-|++||||+||+|...++... .|-.+.......+.+.. ++-++||||
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmk---rIfLIDcPG 361 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMK---RIFLIDCPG 361 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHh---ceeEecCCC
No 465
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.97 E-value=0.00076 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.719 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
..++++|+|++|||||+|+-.++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3489999999999999999988754
No 466
>PRK08233 hypothetical protein; Provisional
Probab=96.97 E-value=0.00085 Score=48.23 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=20.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
+.+-|+|.|++|||||||..+|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3467888899999999999988753
No 467
>PRK01889 GTPase RsgA; Reviewed
Probab=96.97 E-value=0.00082 Score=53.79 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-.++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3689999999999999999987544
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.96 E-value=0.00072 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 469
>PRK14531 adenylate kinase; Provisional
Probab=96.95 E-value=0.00076 Score=48.79 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
+.+|+++|+|||||||+...+.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la 23 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLC 23 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999998774
No 470
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.95 E-value=0.00076 Score=44.10 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
--++++|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999875
No 471
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.95 E-value=0.0014 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.-|+|+|++|+|||||++.|...
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhc
Confidence 55677899999999999999754
No 472
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.95 E-value=0.00069 Score=48.69 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988654
No 473
>PRK14532 adenylate kinase; Provisional
Probab=96.94 E-value=0.00073 Score=48.99 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
++|+++|+|||||||+..++-
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la 21 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLV 21 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999998885
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.94 E-value=0.00072 Score=49.03 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++|+|++|+|||||++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999654
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.94 E-value=0.00082 Score=48.29 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
-.++++|+.|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999886
No 476
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.93 E-value=0.0011 Score=48.17 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.=|+|+||+|||||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448889999999999999998653
No 477
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.93 E-value=0.0011 Score=47.51 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=23.0
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
|+.++.. .-|++.|++||||||+...+...
T Consensus 1 ~~~~~~~--~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 1 MQMKPNG--YVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCCCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence 4444433 68999999999999999887643
No 478
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.93 E-value=0.00075 Score=51.15 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
=++++||.|+|||||++.+.+-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3688999999999999998753
No 479
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.92 E-value=0.001 Score=49.85 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
.++|+|+|+|||||||+...|-
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La 27 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILS 27 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999874
No 480
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.92 E-value=0.00074 Score=48.79 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
--|+++|++||||||++..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999999886
No 481
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.91 E-value=0.00087 Score=45.29 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
|++.|++|+|||+++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988765
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.91 E-value=0.00082 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999864
No 483
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.91 E-value=0.001 Score=49.16 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.+.+.|+|.|++|||||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988754
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.90 E-value=0.00087 Score=48.61 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-.++++|+.|||||||++.+.+..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999988754
No 485
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0012 Score=49.49 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028546 12 LVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~ 33 (207)
++++|++|+|||||++.+-+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999876544
No 486
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.85 E-value=0.012 Score=49.47 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028546 12 LVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~ 30 (207)
+++.||+|+||||.+..|.
T Consensus 48 LlLtGP~G~GKtttv~~La 66 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLA 66 (519)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3456999999999998775
No 487
>PRK02496 adk adenylate kinase; Provisional
Probab=96.84 E-value=0.0011 Score=47.96 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
++|+|+|+|||||||+...+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999875
No 488
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.00087 Score=46.15 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=21.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
....+|+|.|.||+|||||..++-
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 446899999999999999999875
No 489
>PRK13949 shikimate kinase; Provisional
Probab=96.83 E-value=0.0011 Score=47.33 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
+|+|+|++|||||||...+-
T Consensus 3 ~I~liG~~GsGKstl~~~La 22 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALA 22 (169)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998764
No 490
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.82 E-value=0.0011 Score=47.43 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
=.++|+|+.|+|||||+|-+-+=
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 36899999999999999976543
No 491
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.82 E-value=0.0053 Score=41.88 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
--|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358899999999999999988653
No 492
>PRK04195 replication factor C large subunit; Provisional
Probab=96.81 E-value=0.02 Score=47.87 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.+++.|++|+||||+++.+...
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46888999999999999988654
No 493
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.80 E-value=0.0015 Score=48.51 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998764
No 494
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.80 E-value=0.0014 Score=48.34 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 495
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0022 Score=47.49 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCC
Q 028546 13 VFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 13 ~v~G~~~sGKStli~~l~~~~ 33 (207)
+++||.|||||||.+++.+..
T Consensus 34 aiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 34 AIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999875
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.80 E-value=0.0015 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999888764
No 497
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.79 E-value=0.0016 Score=47.90 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 498
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0015 Score=49.17 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 499
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.78 E-value=0.0059 Score=48.39 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
..+|+|.|+.|||||||+++++..-.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999986543
No 500
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.78 E-value=0.0011 Score=48.22 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
+|+|+|+|||||||+...|..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998753
Done!