Query 028546
Match_columns 207
No_of_seqs 112 out of 1763
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 22:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.3E-45 2.8E-49 268.4 20.0 200 5-207 9-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 2.7E-38 9.2E-43 232.2 22.2 174 1-175 1-174 (206)
3 1vg8_A RAS-related protein RAB 100.0 1.4E-36 4.8E-41 223.0 17.7 172 1-174 1-177 (207)
4 3cpj_B GTP-binding protein YPT 100.0 2E-35 6.8E-40 219.6 21.4 171 7-177 11-181 (223)
5 2bov_A RAla, RAS-related prote 100.0 4.5E-35 1.5E-39 214.8 19.4 168 5-173 10-178 (206)
6 2efe_B Small GTP-binding prote 100.0 3.8E-34 1.3E-38 205.7 22.9 169 6-174 9-177 (181)
7 3t5g_A GTP-binding protein RHE 100.0 1.5E-34 5.2E-39 207.9 20.7 174 5-179 2-176 (181)
8 3tkl_A RAS-related protein RAB 100.0 2.9E-34 1E-38 208.8 22.0 167 8-174 15-181 (196)
9 1r2q_A RAS-related protein RAB 100.0 3.3E-34 1.1E-38 203.7 21.5 166 7-172 4-169 (170)
10 1ek0_A Protein (GTP-binding pr 100.0 4.1E-34 1.4E-38 203.2 21.9 165 8-172 2-169 (170)
11 2y8e_A RAB-protein 6, GH09086P 100.0 3.3E-34 1.1E-38 205.5 21.2 168 6-173 11-178 (179)
12 1z0f_A RAB14, member RAS oncog 100.0 4.2E-34 1.4E-38 204.9 21.7 168 5-172 11-178 (179)
13 2a5j_A RAS-related protein RAB 100.0 5.6E-34 1.9E-38 206.9 22.2 170 3-172 15-184 (191)
14 1z08_A RAS-related protein RAB 100.0 3E-34 1E-38 204.1 19.9 166 7-172 4-169 (170)
15 2g6b_A RAS-related protein RAB 100.0 9.1E-34 3.1E-38 203.5 22.7 169 6-174 7-176 (180)
16 1zbd_A Rabphilin-3A; G protein 100.0 4.1E-34 1.4E-38 209.4 21.0 169 5-173 4-172 (203)
17 2ew1_A RAS-related protein RAB 100.0 5.7E-34 1.9E-38 208.6 21.7 166 7-172 24-189 (201)
18 2fu5_C RAS-related protein RAB 100.0 2.5E-34 8.6E-39 207.1 19.5 167 7-173 6-172 (183)
19 3tw8_B RAS-related protein RAB 100.0 3.8E-34 1.3E-38 205.4 20.2 168 6-174 6-173 (181)
20 1z0j_A RAB-22, RAS-related pro 100.0 1.3E-33 4.4E-38 200.7 22.7 166 7-172 4-169 (170)
21 2gf9_A RAS-related protein RAB 100.0 7.7E-34 2.6E-38 205.8 21.6 167 6-172 19-185 (189)
22 2bme_A RAB4A, RAS-related prot 100.0 4.6E-34 1.6E-38 206.1 20.1 168 6-173 7-174 (186)
23 2hup_A RAS-related protein RAB 100.0 2.4E-34 8E-39 210.6 18.7 168 5-172 25-193 (201)
24 2fg5_A RAB-22B, RAS-related pr 100.0 1E-33 3.5E-38 205.7 20.6 167 7-173 21-187 (192)
25 2gf0_A GTP-binding protein DI- 100.0 1.2E-33 4.2E-38 206.0 20.6 166 7-174 6-173 (199)
26 2hxs_A RAB-26, RAS-related pro 100.0 8.1E-34 2.8E-38 203.4 19.3 169 6-174 3-175 (178)
27 3bc1_A RAS-related protein RAB 100.0 6.1E-34 2.1E-38 206.6 18.9 173 1-173 3-186 (195)
28 2fn4_A P23, RAS-related protei 100.0 1.3E-33 4.3E-38 202.7 20.2 168 5-173 5-173 (181)
29 2oil_A CATX-8, RAS-related pro 100.0 2.3E-33 8E-38 203.8 21.4 169 4-172 20-188 (193)
30 2j0v_A RAC-like GTP-binding pr 100.0 4.8E-34 1.7E-38 210.4 17.7 173 2-176 2-184 (212)
31 3kkq_A RAS-related protein M-R 100.0 3E-33 1E-37 201.5 21.4 166 5-171 14-181 (183)
32 1z2a_A RAS-related protein RAB 100.0 1.7E-33 5.9E-38 199.7 19.9 165 7-172 3-167 (168)
33 2o52_A RAS-related protein RAB 100.0 9.2E-34 3.1E-38 207.3 18.9 167 6-172 22-188 (200)
34 2il1_A RAB12; G-protein, GDP, 100.0 9.8E-34 3.4E-38 205.8 18.6 167 5-171 22-189 (192)
35 1g16_A RAS-related protein SEC 100.0 1.3E-33 4.6E-38 200.6 18.8 165 8-173 2-166 (170)
36 3oes_A GTPase rhebl1; small GT 100.0 4.9E-34 1.7E-38 208.9 16.8 173 3-176 18-191 (201)
37 1z06_A RAS-related protein RAB 100.0 2.4E-33 8.2E-38 203.2 20.2 168 5-172 16-188 (189)
38 2p5s_A RAS and EF-hand domain 100.0 1.3E-33 4.5E-38 206.2 18.8 169 4-172 23-197 (199)
39 3cbq_A GTP-binding protein REM 100.0 2E-33 6.8E-38 204.8 19.5 169 6-174 20-190 (195)
40 1u8z_A RAS-related protein RAL 100.0 4.3E-33 1.5E-37 197.4 20.4 165 7-172 2-167 (168)
41 3dz8_A RAS-related protein RAB 100.0 1.5E-34 5.2E-39 209.9 13.0 167 7-173 21-187 (191)
42 1x3s_A RAS-related protein RAB 100.0 6E-33 2.1E-37 201.6 21.1 169 7-176 13-182 (195)
43 4dsu_A GTPase KRAS, isoform 2B 100.0 3.3E-33 1.1E-37 202.0 19.4 166 7-174 2-168 (189)
44 3cph_A RAS-related protein SEC 100.0 6.1E-33 2.1E-37 204.4 20.6 166 7-173 18-183 (213)
45 1c1y_A RAS-related protein RAP 100.0 5.8E-33 2E-37 196.8 19.7 164 7-171 1-166 (167)
46 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-32 4.5E-37 196.9 21.5 166 7-173 5-175 (177)
47 3c5c_A RAS-like protein 12; GD 100.0 4.7E-33 1.6E-37 201.5 19.1 166 4-171 16-185 (187)
48 3q85_A GTP-binding protein REM 100.0 5.8E-33 2E-37 197.3 19.0 164 9-172 2-167 (169)
49 3reg_A RHO-like small GTPase; 100.0 1.9E-32 6.6E-37 199.2 22.0 168 6-175 20-191 (194)
50 2f7s_A C25KG, RAS-related prot 100.0 8E-34 2.7E-38 209.9 14.9 169 5-173 21-200 (217)
51 3clv_A RAB5 protein, putative; 100.0 2.6E-32 9E-37 199.5 22.6 165 4-171 2-203 (208)
52 2atx_A Small GTP binding prote 100.0 9.6E-33 3.3E-37 200.7 20.1 169 1-171 10-192 (194)
53 3q3j_B RHO-related GTP-binding 100.0 6.7E-33 2.3E-37 204.8 19.5 170 4-175 22-206 (214)
54 2atv_A RERG, RAS-like estrogen 100.0 4.8E-33 1.6E-37 202.7 18.4 170 1-172 20-191 (196)
55 3ihw_A Centg3; RAS, centaurin, 100.0 1.1E-32 3.7E-37 199.1 20.0 164 3-173 14-181 (184)
56 2nzj_A GTP-binding protein REM 100.0 9.2E-33 3.2E-37 197.3 18.8 165 7-172 2-169 (175)
57 2iwr_A Centaurin gamma 1; ANK 100.0 2.6E-32 8.9E-37 195.7 20.8 164 3-173 1-170 (178)
58 2a9k_A RAS-related protein RAL 100.0 9.2E-33 3.2E-37 199.2 18.6 170 3-173 12-182 (187)
59 1kao_A RAP2A; GTP-binding prot 100.0 1.2E-32 4.2E-37 194.9 18.7 164 7-171 1-165 (167)
60 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.4E-32 1.5E-36 195.6 21.1 167 6-174 2-182 (186)
61 4djt_A GTP-binding nuclear pro 100.0 1.8E-32 6.3E-37 202.8 19.2 173 7-179 9-182 (218)
62 3q72_A GTP-binding protein RAD 100.0 2.5E-32 8.6E-37 193.5 18.8 162 9-172 2-164 (166)
63 3con_A GTPase NRAS; structural 100.0 6E-32 2E-36 195.8 20.8 171 2-174 14-185 (190)
64 1ky3_A GTP-binding protein YPT 100.0 2.5E-32 8.5E-37 196.1 18.5 171 1-172 1-178 (182)
65 3l0i_B RAS-related protein RAB 100.0 1.9E-34 6.4E-39 210.7 6.8 166 8-173 32-197 (199)
66 2q3h_A RAS homolog gene family 100.0 5.1E-32 1.7E-36 197.9 19.6 167 5-173 16-196 (201)
67 2erx_A GTP-binding protein DI- 100.0 6.7E-32 2.3E-36 192.1 19.5 165 8-173 2-168 (172)
68 2yc2_C IFT27, small RAB-relate 100.0 6.4E-33 2.2E-37 203.4 14.1 167 7-173 18-193 (208)
69 2g3y_A GTP-binding protein GEM 100.0 6.3E-32 2.2E-36 198.9 19.0 166 5-171 33-202 (211)
70 2ce2_X GTPase HRAS; signaling 100.0 3.6E-31 1.2E-35 187.0 21.2 163 8-172 2-165 (166)
71 1m7b_A RND3/RHOE small GTP-bin 100.0 1.2E-31 4.1E-36 193.5 18.9 164 6-171 4-182 (184)
72 3bwd_D RAC-like GTP-binding pr 100.0 1.5E-32 5E-37 197.5 13.4 167 3-171 2-180 (182)
73 1gwn_A RHO-related GTP-binding 100.0 1.8E-31 6E-36 196.0 18.8 164 6-171 25-203 (205)
74 3gj0_A GTP-binding nuclear pro 100.0 7.2E-32 2.4E-36 200.1 16.8 172 2-176 8-179 (221)
75 2gco_A H9, RHO-related GTP-bin 100.0 5.3E-31 1.8E-35 192.7 21.1 163 7-171 23-199 (201)
76 2j1l_A RHO-related GTP-binding 100.0 1.6E-31 5.5E-36 197.3 18.2 166 7-174 32-211 (214)
77 2fv8_A H6, RHO-related GTP-bin 100.0 6.8E-31 2.3E-35 193.0 20.6 164 7-172 23-200 (207)
78 4gzl_A RAS-related C3 botulinu 100.0 4.6E-31 1.6E-35 193.5 18.2 163 6-170 27-203 (204)
79 2cjw_A GTP-binding protein GEM 100.0 3.9E-30 1.3E-34 186.9 20.6 164 7-171 4-171 (192)
80 4bas_A ADP-ribosylation factor 100.0 4.4E-31 1.5E-35 192.5 14.7 166 4-175 12-192 (199)
81 3t1o_A Gliding protein MGLA; G 100.0 7.5E-32 2.6E-36 196.1 10.3 166 4-173 9-193 (198)
82 2f9l_A RAB11B, member RAS onco 100.0 8.1E-30 2.8E-34 186.1 20.5 165 8-172 4-168 (199)
83 2h57_A ADP-ribosylation factor 100.0 1.3E-29 4.4E-34 183.7 19.2 162 6-173 18-188 (190)
84 1oix_A RAS-related protein RAB 100.0 6.8E-29 2.3E-33 180.2 21.4 164 7-170 27-190 (191)
85 1upt_A ARL1, ADP-ribosylation 100.0 6.1E-30 2.1E-34 181.9 15.1 159 7-172 5-169 (171)
86 1zj6_A ADP-ribosylation factor 100.0 1.4E-29 4.9E-34 182.9 16.8 164 7-177 14-183 (187)
87 1ksh_A ARF-like protein 2; sma 100.0 4.9E-29 1.7E-33 179.9 19.5 160 7-173 16-181 (186)
88 2b6h_A ADP-ribosylation factor 100.0 2.1E-30 7.3E-35 188.3 12.3 161 5-172 25-191 (192)
89 1zd9_A ADP-ribosylation factor 100.0 3.4E-30 1.2E-34 186.5 13.4 161 7-173 20-186 (188)
90 1f6b_A SAR1; gtpases, N-termin 100.0 1.5E-29 5.2E-34 184.6 16.6 157 7-170 23-197 (198)
91 1r8s_A ADP-ribosylation factor 100.0 1.8E-30 6.3E-35 183.5 11.4 156 10-172 1-162 (164)
92 1m2o_B GTP-binding protein SAR 100.0 2.9E-29 9.8E-34 182.0 17.6 156 7-169 21-189 (190)
93 2h17_A ADP-ribosylation factor 100.0 2.1E-29 7.1E-34 181.2 14.9 158 5-169 17-180 (181)
94 1fzq_A ADP-ribosylation factor 100.0 7.5E-29 2.6E-33 178.4 16.4 160 7-173 14-179 (181)
95 2zej_A Dardarin, leucine-rich 100.0 6.1E-30 2.1E-34 184.6 10.6 166 9-175 2-181 (184)
96 2x77_A ADP-ribosylation factor 100.0 9.8E-30 3.4E-34 184.1 10.7 159 7-172 20-184 (189)
97 2wkq_A NPH1-1, RAS-related C3 100.0 4.5E-28 1.5E-32 189.7 20.3 162 8-171 154-329 (332)
98 3llu_A RAS-related GTP-binding 100.0 5E-29 1.7E-33 181.5 13.0 163 3-170 14-195 (196)
99 2wji_A Ferrous iron transport 100.0 1.3E-28 4.3E-33 174.7 14.6 155 8-171 2-164 (165)
100 3th5_A RAS-related C3 botulinu 99.9 2.8E-31 9.6E-36 194.5 0.0 162 7-170 28-203 (204)
101 1moz_A ARL1, ADP-ribosylation 100.0 3.6E-28 1.2E-32 174.7 15.5 158 7-171 16-179 (183)
102 2lkc_A Translation initiation 100.0 1E-27 3.5E-32 171.6 14.4 157 6-174 5-173 (178)
103 2qu8_A Putative nucleolar GTP- 100.0 2.3E-27 7.7E-32 176.7 16.2 165 7-174 27-207 (228)
104 3c5h_A Glucocorticoid receptor 100.0 8.5E-29 2.9E-33 187.4 8.2 165 5-171 15-254 (255)
105 2fh5_B SR-beta, signal recogni 100.0 4.5E-27 1.5E-31 173.3 16.5 161 7-170 5-214 (214)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 3.3E-27 1.1E-31 183.1 15.4 163 8-172 2-181 (307)
107 2wjg_A FEOB, ferrous iron tran 99.9 2.2E-27 7.6E-32 171.4 12.5 161 5-174 3-171 (188)
108 3o47_A ADP-ribosylation factor 99.9 1.9E-27 6.6E-32 186.0 12.9 160 7-173 163-328 (329)
109 1svi_A GTP-binding protein YSX 99.9 2.2E-27 7.7E-32 172.3 11.7 162 3-171 17-194 (195)
110 3lvq_E ARF-GAP with SH3 domain 99.9 3.6E-26 1.2E-30 188.2 19.9 166 7-179 320-491 (497)
111 3iev_A GTP-binding protein ERA 99.9 3.2E-26 1.1E-30 177.6 17.3 170 4-178 5-188 (308)
112 3a1s_A Iron(II) transport prot 99.9 1.5E-26 5.1E-31 175.2 13.9 156 7-171 3-166 (258)
113 2cxx_A Probable GTP-binding pr 99.9 5.1E-27 1.8E-31 169.6 10.2 157 10-175 2-187 (190)
114 2gj8_A MNME, tRNA modification 99.9 7.2E-27 2.5E-31 166.8 10.1 156 8-173 3-167 (172)
115 2dyk_A GTP-binding protein; GT 99.9 2E-26 6.8E-31 162.1 11.3 150 10-170 2-160 (161)
116 3dpu_A RAB family protein; roc 99.9 7.4E-27 2.5E-31 193.7 9.2 167 5-175 37-211 (535)
117 3pqc_A Probable GTP-binding pr 99.9 9.7E-26 3.3E-30 163.4 13.9 161 2-172 16-194 (195)
118 3i8s_A Ferrous iron transport 99.9 9.4E-27 3.2E-31 177.8 8.8 158 7-173 1-170 (274)
119 3iby_A Ferrous iron transport 99.9 2.6E-26 8.9E-31 173.6 9.6 151 10-169 2-164 (256)
120 3k53_A Ferrous iron transport 99.9 1.1E-25 3.9E-30 171.7 12.0 160 7-174 1-168 (271)
121 3r7w_B Gtpase2, GTP-binding pr 99.9 2E-26 6.7E-31 177.8 7.6 156 11-173 1-175 (331)
122 3b1v_A Ferrous iron uptake tra 99.9 4.2E-26 1.4E-30 173.7 9.0 154 9-172 3-164 (272)
123 4dhe_A Probable GTP-binding pr 99.9 9.6E-26 3.3E-30 167.1 9.6 167 3-174 23-213 (223)
124 1wf3_A GTP-binding protein; GT 99.9 9.2E-25 3.2E-29 168.6 13.5 166 1-177 1-178 (301)
125 1nrj_B SR-beta, signal recogni 99.9 9.4E-26 3.2E-30 166.6 5.1 149 1-158 4-170 (218)
126 3qq5_A Small GTP-binding prote 99.9 3.6E-25 1.2E-29 177.5 8.2 164 1-173 26-197 (423)
127 2hjg_A GTP-binding protein ENG 99.9 1.1E-24 3.8E-29 176.4 10.8 165 7-177 173-354 (436)
128 3gee_A MNME, tRNA modification 99.9 4E-24 1.4E-28 174.1 13.3 156 9-171 233-397 (476)
129 2e87_A Hypothetical protein PH 99.9 3.3E-23 1.1E-27 163.8 16.4 162 7-173 165-337 (357)
130 4dcu_A GTP-binding protein ENG 99.9 4.1E-24 1.4E-28 174.0 11.1 165 7-177 193-374 (456)
131 1lnz_A SPO0B-associated GTP-bi 99.9 9.1E-24 3.1E-28 165.4 10.6 160 11-175 160-333 (342)
132 1mky_A Probable GTP-binding pr 99.9 5.8E-23 2E-27 166.5 12.7 151 10-172 2-166 (439)
133 1wb1_A Translation elongation 99.9 6.7E-23 2.3E-27 167.6 13.0 157 6-171 16-188 (482)
134 1s0u_A EIF-2-gamma, translatio 99.9 3.9E-22 1.3E-26 160.3 17.1 163 4-172 3-198 (408)
135 1ega_A Protein (GTP-binding pr 99.9 1.8E-22 6.2E-27 156.0 14.5 163 6-175 5-178 (301)
136 3sjy_A Translation initiation 99.9 8.1E-22 2.8E-26 158.2 18.5 167 5-173 4-193 (403)
137 1xzp_A Probable tRNA modificat 99.9 5.4E-23 1.8E-27 167.5 11.7 151 10-171 244-404 (482)
138 2hjg_A GTP-binding protein ENG 99.9 1.2E-23 4E-28 170.5 6.9 176 9-195 3-188 (436)
139 3j2k_7 ERF3, eukaryotic polype 99.9 1.9E-22 6.5E-27 163.3 13.9 154 6-164 14-217 (439)
140 3lxx_A GTPase IMAP family memb 99.9 1.9E-22 6.3E-27 151.1 12.8 164 6-173 26-215 (239)
141 3cb4_D GTP-binding protein LEP 99.9 2.8E-22 9.5E-27 166.9 14.5 159 9-173 4-183 (599)
142 2ywe_A GTP-binding protein LEP 99.9 4.2E-22 1.4E-26 165.6 14.9 160 8-173 5-185 (600)
143 2xtp_A GTPase IMAP family memb 99.9 3E-22 1E-26 151.8 12.2 164 7-174 20-210 (260)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 1.4E-21 4.8E-26 154.3 16.1 159 10-171 179-353 (364)
145 3geh_A MNME, tRNA modification 99.9 7.1E-23 2.4E-27 166.1 8.6 154 9-174 224-386 (462)
146 1kk1_A EIF2gamma; initiation o 99.9 1.1E-21 3.6E-26 157.9 14.8 160 7-172 8-200 (410)
147 3lxw_A GTPase IMAP family memb 99.9 9.1E-22 3.1E-26 148.0 13.3 167 5-175 17-211 (247)
148 1cip_A Protein (guanine nucleo 99.9 5.6E-22 1.9E-26 155.8 12.3 122 48-171 185-343 (353)
149 3izy_P Translation initiation 99.9 6.3E-24 2.1E-28 174.4 0.3 162 8-174 3-170 (537)
150 3p26_A Elongation factor 1 alp 99.9 4.5E-22 1.5E-26 163.0 11.1 151 8-161 32-227 (483)
151 3t5d_A Septin-7; GTP-binding p 99.9 1.8E-22 6.2E-27 154.1 8.0 162 6-171 5-203 (274)
152 1mky_A Probable GTP-binding pr 99.9 2.4E-21 8.3E-26 157.0 14.3 163 8-176 179-359 (439)
153 1jny_A EF-1-alpha, elongation 99.9 1.5E-22 5.1E-27 163.9 6.1 156 6-164 3-205 (435)
154 4dcu_A GTP-binding protein ENG 99.9 1.2E-22 4.2E-27 165.4 5.6 177 7-194 21-207 (456)
155 3ohm_A Guanine nucleotide-bind 99.9 4.3E-21 1.5E-25 148.7 13.2 125 46-172 157-318 (327)
156 1zun_B Sulfate adenylate trans 99.9 1.1E-21 3.9E-26 158.7 10.0 151 7-162 22-214 (434)
157 3tr5_A RF-3, peptide chain rel 99.9 4.1E-21 1.4E-25 158.2 12.7 115 8-128 12-148 (528)
158 2ged_A SR-beta, signal recogni 99.9 1.2E-21 4.3E-26 141.7 8.2 117 6-131 45-173 (193)
159 1d2e_A Elongation factor TU (E 99.9 5E-21 1.7E-25 153.3 12.0 159 8-172 2-195 (397)
160 1g7s_A Translation initiation 99.8 1.1E-20 3.8E-25 157.4 14.0 158 7-171 3-217 (594)
161 2c78_A Elongation factor TU-A; 99.8 1.5E-21 5E-26 156.8 8.4 159 7-171 9-211 (405)
162 3izq_1 HBS1P, elongation facto 99.8 3.6E-21 1.2E-25 161.1 10.0 152 7-162 165-362 (611)
163 2xtz_A Guanine nucleotide-bind 99.8 6E-21 2E-25 149.9 10.5 116 56-171 181-344 (354)
164 2elf_A Protein translation elo 99.8 3.8E-21 1.3E-25 152.2 8.8 146 11-172 23-180 (370)
165 1zo1_I IF2, translation initia 99.8 1.6E-22 5.3E-27 164.9 0.8 154 7-169 2-164 (501)
166 2qag_A Septin-2, protein NEDD5 99.8 5.1E-22 1.7E-26 157.0 3.6 162 8-175 36-236 (361)
167 1r5b_A Eukaryotic peptide chai 99.8 9.4E-22 3.2E-26 160.4 4.6 155 7-163 41-243 (467)
168 1f60_A Elongation factor EEF1A 99.8 7E-22 2.4E-26 160.7 3.0 151 7-162 5-202 (458)
169 4fid_A G protein alpha subunit 99.8 3.8E-20 1.3E-24 143.9 11.6 124 47-172 152-328 (340)
170 2aka_B Dynamin-1; fusion prote 99.8 6.4E-21 2.2E-25 147.2 5.3 159 7-169 24-250 (299)
171 3def_A T7I23.11 protein; chlor 99.8 3E-19 1E-23 135.4 14.5 126 7-135 34-172 (262)
172 3avx_A Elongation factor TS, e 99.8 3.7E-20 1.3E-24 161.4 10.0 162 6-171 293-485 (1289)
173 3mca_A HBS1, elongation factor 99.8 3.4E-21 1.1E-25 160.9 2.9 160 7-171 175-396 (592)
174 1pui_A ENGB, probable GTP-bind 99.8 1E-19 3.5E-24 133.3 10.3 159 5-172 22-199 (210)
175 2dy1_A Elongation factor G; tr 99.8 2.4E-19 8.1E-24 151.7 13.6 121 1-127 1-139 (665)
176 1udx_A The GTP-binding protein 99.8 1.3E-18 4.5E-23 139.2 12.3 161 11-175 159-328 (416)
177 2h5e_A Peptide chain release f 99.8 5.8E-18 2E-22 139.6 16.2 115 8-128 12-148 (529)
178 1h65_A Chloroplast outer envel 99.8 3.7E-18 1.3E-22 130.0 13.8 126 7-135 37-175 (270)
179 1dar_A EF-G, elongation factor 99.8 4.1E-18 1.4E-22 144.7 15.0 116 7-128 10-143 (691)
180 1jwy_B Dynamin A GTPase domain 99.8 8.1E-19 2.8E-23 136.4 9.1 114 58-174 131-264 (315)
181 2j69_A Bacterial dynamin-like 99.8 2.3E-18 7.9E-23 146.3 12.5 162 8-172 68-325 (695)
182 2xex_A Elongation factor G; GT 99.8 1.7E-17 5.9E-22 140.9 16.6 118 5-128 6-141 (693)
183 1wxq_A GTP-binding protein; st 99.8 2.3E-19 8E-24 143.1 4.8 85 10-94 1-114 (397)
184 2qnr_A Septin-2, protein NEDD5 99.8 2.9E-19 9.8E-24 138.0 5.1 166 8-178 17-220 (301)
185 2rdo_7 EF-G, elongation factor 99.8 4.4E-17 1.5E-21 138.5 18.2 119 6-128 7-148 (704)
186 3t34_A Dynamin-related protein 99.8 4E-19 1.4E-23 140.6 4.7 155 10-167 35-256 (360)
187 2qag_C Septin-7; cell cycle, c 99.7 4.6E-18 1.6E-22 136.1 9.0 159 9-171 31-226 (418)
188 1u0l_A Probable GTPase ENGC; p 99.7 2E-18 6.9E-23 133.3 6.5 135 24-169 32-170 (301)
189 1zcb_A G alpha I/13; GTP-bindi 99.7 1.4E-17 4.7E-22 131.3 10.6 123 47-171 192-352 (362)
190 1azs_C GS-alpha; complex (lyas 99.7 4.7E-17 1.6E-21 129.3 11.5 124 46-171 207-384 (402)
191 3vqt_A RF-3, peptide chain rel 99.7 3.3E-16 1.1E-20 129.7 16.0 114 8-127 30-165 (548)
192 2wsm_A Hydrogenase expression/ 99.7 4.6E-17 1.6E-21 120.1 7.8 155 9-174 30-216 (221)
193 2x2e_A Dynamin-1; nitration, h 99.7 4.9E-18 1.7E-22 134.0 2.3 159 7-168 29-254 (353)
194 1jal_A YCHF protein; nucleotid 99.7 1.6E-15 5.6E-20 118.9 15.3 85 9-93 2-108 (363)
195 3p32_A Probable GTPase RV1496/ 99.6 4.9E-17 1.7E-21 128.3 3.1 104 58-172 172-284 (355)
196 2qpt_A EH domain-containing pr 99.6 2.4E-16 8.2E-21 130.6 6.0 123 6-131 62-235 (550)
197 2hf9_A Probable hydrogenase ni 99.6 4.2E-17 1.4E-21 120.8 1.0 154 8-172 37-224 (226)
198 1n0u_A EF-2, elongation factor 99.6 6.5E-16 2.2E-20 133.7 8.0 116 8-127 18-163 (842)
199 4fn5_A EF-G 1, elongation fact 99.6 2.2E-14 7.7E-19 122.3 16.4 114 10-127 14-150 (709)
200 3j25_A Tetracycline resistance 99.6 4.7E-16 1.6E-20 131.1 4.8 112 10-127 3-132 (638)
201 2www_A Methylmalonic aciduria 99.6 4.8E-16 1.6E-20 122.3 4.2 102 58-171 167-278 (349)
202 2dby_A GTP-binding protein; GD 99.6 1.6E-14 5.5E-19 113.9 12.8 84 10-93 2-111 (368)
203 4a9a_A Ribosome-interacting GT 99.6 6.4E-14 2.2E-18 110.5 14.4 153 9-164 72-240 (376)
204 3zvr_A Dynamin-1; hydrolase, D 99.5 6.1E-15 2.1E-19 125.2 6.6 158 8-169 50-275 (772)
205 2p67_A LAO/AO transport system 99.5 5.2E-15 1.8E-19 116.1 4.3 103 58-171 149-260 (341)
206 1yrb_A ATP(GTP)binding protein 99.5 6E-14 2.1E-18 106.0 9.4 111 58-171 109-256 (262)
207 2qm8_A GTPase/ATPase; G protei 99.5 1.1E-13 3.8E-18 108.3 7.4 103 58-171 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.5 2.5E-13 8.5E-18 104.8 8.9 99 68-169 66-166 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1.1E-11 3.9E-16 98.3 14.4 85 9-93 20-127 (392)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 4.5E-13 1.6E-17 106.1 5.9 87 8-94 21-129 (396)
211 3l82_B F-box only protein 4; T 99.4 6E-13 2E-17 95.7 5.6 106 66-174 110-225 (227)
212 3l2o_B F-box only protein 4; s 99.3 1.2E-11 4E-16 93.2 7.5 108 65-174 194-310 (312)
213 3h2y_A GTPase family protein; 99.1 3.1E-10 1.1E-14 89.8 7.1 97 67-170 55-158 (368)
214 2qag_B Septin-6, protein NEDD5 99.0 4.4E-10 1.5E-14 89.9 7.2 139 10-153 43-217 (427)
215 3ec1_A YQEH GTPase; atnos1, at 99.0 2.5E-11 8.5E-16 96.1 -0.7 141 9-159 162-318 (369)
216 2j37_W Signal recognition part 99.0 1.8E-10 6.1E-15 94.2 4.0 151 8-169 100-310 (504)
217 3sop_A Neuronal-specific septi 99.0 6.4E-10 2.2E-14 84.3 6.1 137 9-150 2-178 (270)
218 3ec1_A YQEH GTPase; atnos1, at 98.9 6.1E-10 2.1E-14 88.1 4.3 98 67-171 57-161 (369)
219 1tq4_A IIGP1, interferon-induc 98.9 4.4E-08 1.5E-12 78.3 13.9 163 9-177 69-258 (413)
220 3h2y_A GTPase family protein; 98.9 8.8E-11 3E-15 92.9 -2.0 135 9-153 160-311 (368)
221 1puj_A YLQF, conserved hypothe 98.9 1.3E-09 4.3E-14 83.2 3.7 101 62-172 3-106 (282)
222 1puj_A YLQF, conserved hypothe 98.6 5.9E-08 2E-12 73.9 5.2 57 8-69 119-176 (282)
223 3dm5_A SRP54, signal recogniti 98.5 3.6E-07 1.2E-11 73.5 8.9 86 58-153 183-274 (443)
224 2v3c_C SRP54, signal recogniti 98.5 9E-08 3.1E-12 77.1 4.9 83 58-151 181-271 (432)
225 3cnl_A YLQF, putative uncharac 98.5 5.1E-08 1.7E-12 73.5 2.8 56 10-70 100-156 (262)
226 3cnl_A YLQF, putative uncharac 98.4 4.8E-08 1.6E-12 73.7 0.8 92 66-169 5-98 (262)
227 1f5n_A Interferon-induced guan 98.3 5.2E-07 1.8E-11 75.1 4.8 63 8-70 37-103 (592)
228 3kl4_A SRP54, signal recogniti 98.3 2.1E-07 7.2E-12 74.7 2.0 90 58-159 180-277 (433)
229 1t9h_A YLOQ, probable GTPase E 98.3 3.3E-07 1.1E-11 70.5 2.7 91 72-165 77-170 (307)
230 2rcn_A Probable GTPase ENGC; Y 98.2 4.2E-06 1.4E-10 65.6 7.8 85 78-166 127-213 (358)
231 1j8m_F SRP54, signal recogniti 98.2 2.8E-06 9.6E-11 65.1 6.3 90 58-160 181-279 (297)
232 3szr_A Interferon-induced GTP- 98.2 5.2E-06 1.8E-10 69.8 8.1 25 11-35 47-71 (608)
233 3e70_C DPA, signal recognition 98.0 2.2E-05 7.7E-10 60.9 7.8 90 59-160 213-308 (328)
234 3q5d_A Atlastin-1; G protein, 97.9 1.4E-05 4.8E-10 64.4 5.3 23 10-32 68-90 (447)
235 1bif_A 6-phosphofructo-2-kinas 97.9 9.3E-07 3.2E-11 72.1 -2.1 102 7-110 37-148 (469)
236 1ye8_A Protein THEP1, hypothet 97.5 5.7E-05 1.9E-09 53.4 3.1 23 10-32 1-23 (178)
237 1kgd_A CASK, peripheral plasma 97.4 0.0001 3.5E-09 52.1 2.9 23 10-32 6-28 (180)
238 2xxa_A Signal recognition part 97.3 0.00076 2.6E-08 54.3 8.2 83 58-151 184-273 (433)
239 1lvg_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 52.7 2.9 22 10-31 5-26 (198)
240 1zp6_A Hypothetical protein AT 97.3 0.00018 6.3E-09 51.0 3.7 23 10-32 10-32 (191)
241 3asz_A Uridine kinase; cytidin 97.3 0.00015 5.2E-09 52.3 3.1 26 6-31 3-28 (211)
242 4gp7_A Metallophosphoesterase; 97.3 0.00014 4.9E-09 50.9 2.8 20 11-30 11-30 (171)
243 3ney_A 55 kDa erythrocyte memb 97.2 0.00021 7.2E-09 51.2 3.6 28 5-32 15-42 (197)
244 1y63_A LMAJ004144AAA protein; 97.2 0.00024 8.1E-09 50.3 3.8 30 3-32 4-33 (184)
245 3tr0_A Guanylate kinase, GMP k 97.2 0.00017 5.8E-09 51.7 2.9 22 11-32 9-30 (205)
246 3a00_A Guanylate kinase, GMP k 97.2 0.00018 6E-09 51.1 2.8 21 12-32 4-24 (186)
247 1s96_A Guanylate kinase, GMP k 97.2 0.0002 6.9E-09 52.3 2.9 24 10-33 17-40 (219)
248 1znw_A Guanylate kinase, GMP k 97.2 0.00021 7.3E-09 51.5 2.8 23 11-33 22-44 (207)
249 2j41_A Guanylate kinase; GMP, 97.1 0.00029 9.8E-09 50.5 3.3 25 9-33 6-30 (207)
250 1z6g_A Guanylate kinase; struc 97.1 0.00023 8E-09 51.8 2.8 24 10-33 24-47 (218)
251 3iij_A Coilin-interacting nucl 97.1 0.00035 1.2E-08 49.1 3.6 24 7-30 9-32 (180)
252 1ex7_A Guanylate kinase; subst 97.1 0.00031 1.1E-08 49.9 3.1 21 12-32 4-24 (186)
253 1zd8_A GTP:AMP phosphotransfer 97.1 0.00031 1.1E-08 51.4 3.1 28 1-30 1-28 (227)
254 3tif_A Uncharacterized ABC tra 97.1 0.00031 1E-08 51.9 3.1 23 11-33 33-55 (235)
255 3c8u_A Fructokinase; YP_612366 97.1 0.00039 1.3E-08 50.2 3.5 25 8-32 21-45 (208)
256 3tau_A Guanylate kinase, GMP k 97.1 0.00031 1E-08 50.8 2.9 24 10-33 9-32 (208)
257 3lw7_A Adenylate kinase relate 97.0 0.00037 1.3E-08 48.3 3.2 20 10-29 2-21 (179)
258 1knq_A Gluconate kinase; ALFA/ 97.0 0.00058 2E-08 47.7 4.0 23 9-31 8-30 (175)
259 3fb4_A Adenylate kinase; psych 97.0 0.00038 1.3E-08 50.4 3.1 21 10-30 1-21 (216)
260 1htw_A HI0065; nucleotide-bind 97.0 0.00036 1.2E-08 48.2 2.8 23 11-33 35-57 (158)
261 2pcj_A ABC transporter, lipopr 97.0 0.00036 1.2E-08 51.1 2.9 23 11-33 32-54 (224)
262 1kag_A SKI, shikimate kinase I 97.0 0.00039 1.3E-08 48.4 3.0 22 10-31 5-26 (173)
263 3dl0_A Adenylate kinase; phosp 97.0 0.00042 1.4E-08 50.2 3.1 21 10-30 1-21 (216)
264 4eun_A Thermoresistant glucoki 97.0 0.00045 1.5E-08 49.5 3.2 22 10-31 30-51 (200)
265 1kht_A Adenylate kinase; phosp 97.0 0.00045 1.6E-08 48.8 3.2 21 10-30 4-24 (192)
266 2rcn_A Probable GTPase ENGC; Y 97.0 0.0004 1.4E-08 54.4 3.1 24 11-34 217-240 (358)
267 1sgw_A Putative ABC transporte 97.0 0.00044 1.5E-08 50.3 3.1 23 11-33 37-59 (214)
268 2qor_A Guanylate kinase; phosp 97.0 0.00042 1.4E-08 49.8 3.0 23 10-32 13-35 (204)
269 1ly1_A Polynucleotide kinase; 97.0 0.00052 1.8E-08 48.0 3.4 22 10-31 3-24 (181)
270 2bdt_A BH3686; alpha-beta prot 97.0 0.00043 1.5E-08 49.0 3.0 21 11-31 4-24 (189)
271 2onk_A Molybdate/tungstate ABC 97.0 0.00045 1.5E-08 51.2 3.1 23 11-33 26-48 (240)
272 3kb2_A SPBC2 prophage-derived 97.0 0.00045 1.5E-08 47.9 2.9 21 11-31 3-23 (173)
273 2cbz_A Multidrug resistance-as 96.9 0.00046 1.6E-08 51.0 3.1 23 11-33 33-55 (237)
274 1b0u_A Histidine permease; ABC 96.9 0.00047 1.6E-08 51.7 3.1 23 11-33 34-56 (262)
275 3gfo_A Cobalt import ATP-bindi 96.9 0.00047 1.6E-08 52.1 3.1 23 11-33 36-58 (275)
276 2cdn_A Adenylate kinase; phosp 96.9 0.00068 2.3E-08 48.5 3.8 25 6-30 17-41 (201)
277 1qf9_A UMP/CMP kinase, protein 96.9 0.0007 2.4E-08 47.8 3.8 22 9-30 6-27 (194)
278 1qhx_A CPT, protein (chloramph 96.9 0.00063 2.2E-08 47.5 3.5 22 10-31 4-25 (178)
279 1tev_A UMP-CMP kinase; ploop, 96.9 0.00059 2E-08 48.3 3.4 23 8-30 2-24 (196)
280 2pze_A Cystic fibrosis transme 96.9 0.00052 1.8E-08 50.4 3.1 23 11-33 36-58 (229)
281 2bbw_A Adenylate kinase 4, AK4 96.9 0.00054 1.8E-08 50.8 3.2 21 10-30 28-48 (246)
282 1g6h_A High-affinity branched- 96.9 0.00051 1.7E-08 51.4 3.1 23 11-33 35-57 (257)
283 2plr_A DTMP kinase, probable t 96.9 0.00068 2.3E-08 48.7 3.7 24 8-31 3-26 (213)
284 2olj_A Amino acid ABC transpor 96.9 0.00054 1.8E-08 51.4 3.1 23 11-33 52-74 (263)
285 1mv5_A LMRA, multidrug resista 96.9 0.00055 1.9E-08 50.8 3.1 23 11-33 30-52 (243)
286 1nn5_A Similar to deoxythymidy 96.9 0.00059 2E-08 49.2 3.2 23 9-31 9-31 (215)
287 4g1u_C Hemin import ATP-bindin 96.9 0.00075 2.6E-08 50.8 3.9 24 11-34 39-62 (266)
288 1ji0_A ABC transporter; ATP bi 96.9 0.00055 1.9E-08 50.7 3.1 23 11-33 34-56 (240)
289 2ff7_A Alpha-hemolysin translo 96.9 0.00055 1.9E-08 50.9 3.1 23 11-33 37-59 (247)
290 3sr0_A Adenylate kinase; phosp 96.9 0.00059 2E-08 49.3 3.1 21 10-30 1-21 (206)
291 2qi9_C Vitamin B12 import ATP- 96.9 0.00057 2E-08 50.9 3.1 23 11-33 28-50 (249)
292 1vpl_A ABC transporter, ATP-bi 96.9 0.00058 2E-08 51.1 3.1 23 11-33 43-65 (256)
293 1uf9_A TT1252 protein; P-loop, 96.9 0.00071 2.4E-08 48.3 3.4 31 1-32 1-31 (203)
294 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00061 2.1E-08 50.8 3.1 22 11-32 31-52 (250)
295 2eyu_A Twitching motility prot 96.9 0.00055 1.9E-08 51.3 2.8 23 10-32 26-48 (261)
296 2i3b_A HCR-ntpase, human cance 96.8 0.0006 2E-08 48.6 2.9 22 11-32 3-24 (189)
297 2ghi_A Transport protein; mult 96.8 0.00062 2.1E-08 51.0 3.1 23 11-33 48-70 (260)
298 2v9p_A Replication protein E1; 96.8 0.00062 2.1E-08 52.2 3.0 23 10-32 127-149 (305)
299 1u0l_A Probable GTPase ENGC; p 96.8 0.0008 2.7E-08 51.5 3.6 24 11-34 171-194 (301)
300 3b85_A Phosphate starvation-in 96.8 0.00047 1.6E-08 49.9 2.2 22 11-32 24-45 (208)
301 2zu0_C Probable ATP-dependent 96.8 0.00068 2.3E-08 51.0 3.1 22 11-32 48-69 (267)
302 2ixe_A Antigen peptide transpo 96.8 0.00066 2.3E-08 51.2 3.1 23 11-33 47-69 (271)
303 3cm0_A Adenylate kinase; ATP-b 96.8 0.00085 2.9E-08 47.2 3.5 22 9-30 4-25 (186)
304 2jaq_A Deoxyguanosine kinase; 96.8 0.00074 2.5E-08 48.2 3.2 21 11-31 2-22 (205)
305 2ihy_A ABC transporter, ATP-bi 96.8 0.0007 2.4E-08 51.3 3.1 23 11-33 49-71 (279)
306 2nq2_C Hypothetical ABC transp 96.8 0.00069 2.4E-08 50.5 3.1 24 11-34 33-56 (253)
307 2rhm_A Putative kinase; P-loop 96.8 0.00082 2.8E-08 47.5 3.3 23 9-31 5-27 (193)
308 3t61_A Gluconokinase; PSI-biol 96.8 0.0007 2.4E-08 48.5 2.9 22 10-31 19-40 (202)
309 1cke_A CK, MSSA, protein (cyti 96.8 0.00082 2.8E-08 48.9 3.3 22 10-31 6-27 (227)
310 3vaa_A Shikimate kinase, SK; s 96.8 0.00083 2.9E-08 48.0 3.3 21 10-30 26-46 (199)
311 1e4v_A Adenylate kinase; trans 96.8 0.00071 2.4E-08 49.0 2.9 21 10-30 1-21 (214)
312 2yz2_A Putative ABC transporte 96.8 0.00074 2.5E-08 50.8 3.1 23 11-33 35-57 (266)
313 2ehv_A Hypothetical protein PH 96.8 0.00075 2.6E-08 49.8 3.1 20 11-30 32-51 (251)
314 3tlx_A Adenylate kinase 2; str 96.8 0.00091 3.1E-08 49.5 3.5 23 8-30 28-50 (243)
315 1nks_A Adenylate kinase; therm 96.8 0.0008 2.7E-08 47.5 3.1 21 11-31 3-23 (194)
316 2jeo_A Uridine-cytidine kinase 96.8 0.00093 3.2E-08 49.5 3.5 25 7-31 23-47 (245)
317 2if2_A Dephospho-COA kinase; a 96.8 0.00077 2.6E-08 48.3 3.0 22 10-31 2-23 (204)
318 3ec2_A DNA replication protein 96.8 0.0006 2.1E-08 47.9 2.4 23 10-32 39-61 (180)
319 1t9h_A YLOQ, probable GTPase E 96.8 0.00024 8.1E-09 54.6 0.2 25 10-34 174-198 (307)
320 1np6_A Molybdopterin-guanine d 96.7 0.00083 2.8E-08 47.2 2.9 23 10-32 7-29 (174)
321 3uie_A Adenylyl-sulfate kinase 96.7 0.00085 2.9E-08 48.0 3.0 24 9-32 25-48 (200)
322 3lnc_A Guanylate kinase, GMP k 96.7 0.00051 1.7E-08 50.3 1.7 22 11-32 29-51 (231)
323 1aky_A Adenylate kinase; ATP:A 96.7 0.0011 3.6E-08 48.2 3.4 22 9-30 4-25 (220)
324 1ukz_A Uridylate kinase; trans 96.7 0.0016 5.5E-08 46.5 4.3 22 9-30 15-36 (203)
325 4a74_A DNA repair and recombin 96.7 0.00077 2.6E-08 49.0 2.6 23 11-33 27-49 (231)
326 2yv5_A YJEQ protein; hydrolase 96.7 0.00089 3.1E-08 51.3 3.0 21 10-30 166-186 (302)
327 1gvn_B Zeta; postsegregational 96.7 0.0013 4.4E-08 50.0 3.8 25 7-31 31-55 (287)
328 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.7E-08 45.9 3.2 22 10-31 1-22 (168)
329 1jjv_A Dephospho-COA kinase; P 96.7 0.0011 3.7E-08 47.6 3.3 22 10-31 3-24 (206)
330 2pjz_A Hypothetical protein ST 96.7 0.0013 4.4E-08 49.4 3.7 23 11-33 32-54 (263)
331 3aez_A Pantothenate kinase; tr 96.7 0.00091 3.1E-08 51.5 2.9 26 7-32 88-113 (312)
332 2v54_A DTMP kinase, thymidylat 96.6 0.0013 4.5E-08 46.9 3.5 24 9-32 4-27 (204)
333 1uj2_A Uridine-cytidine kinase 96.6 0.0013 4.5E-08 48.9 3.5 27 4-30 17-43 (252)
334 2xb4_A Adenylate kinase; ATP-b 96.6 0.0012 4.1E-08 48.2 3.2 21 10-30 1-21 (223)
335 3trf_A Shikimate kinase, SK; a 96.6 0.0012 4.2E-08 46.4 3.1 21 10-30 6-26 (185)
336 3co5_A Putative two-component 96.6 0.0047 1.6E-07 41.6 5.9 23 10-32 28-50 (143)
337 1via_A Shikimate kinase; struc 96.6 0.0012 4.1E-08 46.1 3.0 20 11-30 6-25 (175)
338 2bbs_A Cystic fibrosis transme 96.6 0.0011 3.7E-08 50.5 2.8 23 11-33 66-88 (290)
339 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0042 1.5E-07 50.0 6.3 21 10-30 68-88 (457)
340 3nh6_A ATP-binding cassette SU 96.6 0.00082 2.8E-08 51.6 2.2 23 11-33 82-104 (306)
341 3jvv_A Twitching mobility prot 96.6 0.0011 3.6E-08 52.1 2.8 22 11-32 125-146 (356)
342 2qt1_A Nicotinamide riboside k 96.6 0.0018 6.3E-08 46.4 3.9 24 9-32 21-44 (207)
343 2wwf_A Thymidilate kinase, put 96.6 0.0017 5.8E-08 46.6 3.7 23 9-31 10-32 (212)
344 1lw7_A Transcriptional regulat 96.6 0.001 3.5E-08 52.3 2.6 24 9-32 170-193 (365)
345 2c95_A Adenylate kinase 1; tra 96.6 0.0015 5.1E-08 46.3 3.2 22 9-30 9-30 (196)
346 1zak_A Adenylate kinase; ATP:A 96.5 0.0013 4.6E-08 47.7 3.0 21 10-30 6-26 (222)
347 3umf_A Adenylate kinase; rossm 96.5 0.0022 7.6E-08 46.6 4.0 24 7-30 26-50 (217)
348 2pbr_A DTMP kinase, thymidylat 96.5 0.0015 5.3E-08 46.1 3.1 21 11-31 2-22 (195)
349 2vli_A Antibiotic resistance p 96.5 0.00096 3.3E-08 46.8 1.9 22 9-30 5-26 (183)
350 2yvu_A Probable adenylyl-sulfa 96.5 0.0024 8.3E-08 45.0 4.1 24 8-31 12-35 (186)
351 2z0h_A DTMP kinase, thymidylat 96.5 0.0017 5.7E-08 46.1 3.1 21 11-31 2-22 (197)
352 2f1r_A Molybdopterin-guanine d 96.5 0.00068 2.3E-08 47.5 1.0 22 11-32 4-25 (171)
353 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0014 4.8E-08 50.9 2.9 23 11-33 173-195 (330)
354 3tui_C Methionine import ATP-b 96.5 0.0016 5.3E-08 51.2 3.1 24 11-34 56-79 (366)
355 2kjq_A DNAA-related protein; s 96.5 0.001 3.5E-08 45.4 1.8 22 11-32 38-59 (149)
356 2p5t_B PEZT; postsegregational 96.5 0.0015 5.2E-08 48.6 2.9 24 8-31 31-54 (253)
357 3be4_A Adenylate kinase; malar 96.4 0.0017 5.8E-08 47.1 3.0 21 10-30 6-26 (217)
358 2ewv_A Twitching motility prot 96.4 0.0015 5.1E-08 51.6 2.8 23 10-32 137-159 (372)
359 2gza_A Type IV secretion syste 96.4 0.0015 5E-08 51.4 2.8 24 10-33 176-199 (361)
360 3fvq_A Fe(3+) IONS import ATP- 96.4 0.002 6.7E-08 50.5 3.4 24 11-34 32-55 (359)
361 1zcb_A G alpha I/13; GTP-bindi 96.4 0.002 6.9E-08 50.6 3.5 24 7-30 31-54 (362)
362 1z47_A CYSA, putative ABC-tran 96.4 0.0022 7.5E-08 50.2 3.6 24 11-34 43-66 (355)
363 2yyz_A Sugar ABC transporter, 96.4 0.0018 6E-08 50.8 3.1 23 11-33 31-53 (359)
364 4e22_A Cytidylate kinase; P-lo 96.4 0.0022 7.5E-08 47.7 3.5 22 9-30 27-48 (252)
365 1p9r_A General secretion pathw 96.4 0.0016 5.4E-08 52.2 2.8 22 11-32 169-190 (418)
366 3r20_A Cytidylate kinase; stru 96.4 0.0021 7.1E-08 47.3 3.2 23 8-30 8-30 (233)
367 2it1_A 362AA long hypothetical 96.4 0.0019 6.4E-08 50.8 3.1 23 11-33 31-53 (362)
368 2x8a_A Nuclear valosin-contain 96.4 0.0017 5.9E-08 48.9 2.8 21 12-32 47-67 (274)
369 3rlf_A Maltose/maltodextrin im 96.4 0.0019 6.5E-08 51.0 3.1 24 11-34 31-54 (381)
370 1vht_A Dephospho-COA kinase; s 96.4 0.0024 8.2E-08 46.2 3.5 23 9-31 4-26 (218)
371 1e6c_A Shikimate kinase; phosp 96.4 0.0021 7E-08 44.6 3.0 21 10-30 3-23 (173)
372 2ze6_A Isopentenyl transferase 96.4 0.0019 6.6E-08 48.1 3.0 20 11-30 3-22 (253)
373 1rz3_A Hypothetical protein rb 96.4 0.0029 9.9E-08 45.3 3.8 24 8-31 21-44 (201)
374 1gtv_A TMK, thymidylate kinase 96.4 0.00072 2.5E-08 48.7 0.6 21 11-31 2-22 (214)
375 1odf_A YGR205W, hypothetical 3 96.4 0.0028 9.5E-08 48.3 3.8 24 7-30 29-52 (290)
376 1ak2_A Adenylate kinase isoenz 96.4 0.0025 8.6E-08 46.7 3.5 21 10-30 17-37 (233)
377 1xjc_A MOBB protein homolog; s 96.4 0.0023 7.8E-08 44.7 3.1 23 10-32 5-27 (169)
378 2bwj_A Adenylate kinase 5; pho 96.4 0.0021 7.1E-08 45.6 3.0 22 10-31 13-34 (199)
379 1g29_1 MALK, maltose transport 96.4 0.002 6.8E-08 50.8 3.1 24 11-34 31-54 (372)
380 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.002 6.9E-08 48.1 3.0 22 10-31 5-26 (260)
381 3tqc_A Pantothenate kinase; bi 96.3 0.0028 9.7E-08 48.9 3.8 24 7-30 90-113 (321)
382 1v43_A Sugar-binding transport 96.3 0.0021 7E-08 50.7 3.1 23 11-33 39-61 (372)
383 3kta_A Chromosome segregation 96.3 0.0021 7.1E-08 45.1 2.8 21 11-31 28-48 (182)
384 2iyv_A Shikimate kinase, SK; t 96.3 0.0022 7.4E-08 45.1 2.9 21 10-30 3-23 (184)
385 1ixz_A ATP-dependent metallopr 96.3 0.0021 7.3E-08 47.7 2.9 22 11-32 51-72 (254)
386 1sq5_A Pantothenate kinase; P- 96.3 0.0027 9.1E-08 48.7 3.5 23 9-31 80-102 (308)
387 1jbk_A CLPB protein; beta barr 96.3 0.0026 8.9E-08 44.4 3.2 23 10-32 44-66 (195)
388 2oap_1 GSPE-2, type II secreti 96.3 0.0021 7.1E-08 52.9 3.0 24 10-33 261-284 (511)
389 1rj9_A FTSY, signal recognitio 96.3 0.0021 7.3E-08 49.2 2.8 84 59-152 186-281 (304)
390 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0023 7.8E-08 46.5 2.8 22 11-32 25-46 (235)
391 2vp4_A Deoxynucleoside kinase; 96.3 0.0032 1.1E-07 46.1 3.7 25 8-32 19-43 (230)
392 2pez_A Bifunctional 3'-phospho 96.3 0.0032 1.1E-07 44.0 3.5 23 9-31 5-27 (179)
393 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0028 9.5E-08 43.2 3.1 19 12-30 26-44 (149)
394 3d31_A Sulfate/molybdate ABC t 96.2 0.0017 5.7E-08 50.8 2.1 23 11-33 28-50 (348)
395 1nij_A Hypothetical protein YJ 96.2 0.0017 6E-08 50.0 2.2 22 12-33 7-28 (318)
396 3b9q_A Chloroplast SRP recepto 96.2 0.0024 8.1E-08 48.9 2.9 84 59-152 185-280 (302)
397 3d3q_A TRNA delta(2)-isopenten 96.2 0.0032 1.1E-07 48.9 3.5 28 1-30 1-28 (340)
398 1zuh_A Shikimate kinase; alpha 96.2 0.0033 1.1E-07 43.4 3.2 20 11-30 9-28 (168)
399 2f6r_A COA synthase, bifunctio 96.2 0.0042 1.4E-07 47.0 3.9 23 8-30 74-96 (281)
400 1in4_A RUVB, holliday junction 96.1 0.0028 9.7E-08 49.1 2.9 22 11-32 53-74 (334)
401 3gd7_A Fusion complex of cysti 96.1 0.0028 9.6E-08 50.3 2.8 22 11-32 49-70 (390)
402 1iy2_A ATP-dependent metallopr 96.1 0.003 1E-07 47.5 2.9 22 11-32 75-96 (278)
403 1oxx_K GLCV, glucose, ABC tran 96.1 0.0016 5.5E-08 51.0 1.3 24 11-34 33-56 (353)
404 1cr0_A DNA primase/helicase; R 96.1 0.0028 9.7E-08 48.2 2.6 22 11-32 37-58 (296)
405 4eaq_A DTMP kinase, thymidylat 96.1 0.0053 1.8E-07 45.0 3.9 24 9-32 26-49 (229)
406 1m7g_A Adenylylsulfate kinase; 96.1 0.0036 1.2E-07 45.1 3.0 23 9-31 25-47 (211)
407 2cvh_A DNA repair and recombin 96.0 0.0035 1.2E-07 45.1 2.8 21 11-31 22-42 (220)
408 2obl_A ESCN; ATPase, hydrolase 96.0 0.0034 1.1E-07 49.1 2.9 23 11-33 73-95 (347)
409 1n0w_A DNA repair protein RAD5 96.0 0.0036 1.2E-07 45.8 2.9 22 11-32 26-47 (243)
410 3nwj_A ATSK2; P loop, shikimat 96.0 0.0038 1.3E-07 46.5 2.9 21 10-30 49-69 (250)
411 2p65_A Hypothetical protein PF 96.0 0.0032 1.1E-07 43.9 2.3 24 9-32 43-66 (187)
412 2grj_A Dephospho-COA kinase; T 96.0 0.0052 1.8E-07 43.8 3.4 24 8-31 11-34 (192)
413 3bos_A Putative DNA replicatio 96.0 0.0044 1.5E-07 45.1 3.1 23 9-31 52-74 (242)
414 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0033 1.1E-07 51.0 2.6 22 11-32 140-161 (460)
415 1ltq_A Polynucleotide kinase; 96.0 0.0048 1.6E-07 46.9 3.4 22 10-31 3-24 (301)
416 2og2_A Putative signal recogni 95.9 0.0039 1.3E-07 48.9 2.9 21 10-30 158-178 (359)
417 3crm_A TRNA delta(2)-isopenten 95.9 0.0059 2E-07 47.1 3.8 21 10-30 6-26 (323)
418 1lv7_A FTSH; alpha/beta domain 95.9 0.0044 1.5E-07 46.0 3.0 22 10-31 46-67 (257)
419 3ozx_A RNAse L inhibitor; ATP 95.9 0.0059 2E-07 50.5 3.8 24 11-34 27-50 (538)
420 4dzz_A Plasmid partitioning pr 95.9 0.0082 2.8E-07 42.7 4.2 85 58-149 76-162 (206)
421 1q3t_A Cytidylate kinase; nucl 95.9 0.0059 2E-07 44.8 3.4 26 6-31 13-38 (236)
422 1tue_A Replication protein E1; 95.8 0.0045 1.6E-07 44.5 2.6 24 8-31 57-80 (212)
423 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0068 2.3E-07 50.2 4.0 24 11-34 49-72 (538)
424 2w58_A DNAI, primosome compone 95.8 0.0053 1.8E-07 43.7 3.0 23 10-32 55-77 (202)
425 3euj_A Chromosome partition pr 95.8 0.0048 1.6E-07 50.3 2.9 20 11-30 31-50 (483)
426 1svm_A Large T antigen; AAA+ f 95.8 0.0049 1.7E-07 48.7 2.8 23 9-31 169-191 (377)
427 3j16_B RLI1P; ribosome recycli 95.8 0.0068 2.3E-07 50.9 3.8 24 11-34 105-128 (608)
428 3ake_A Cytidylate kinase; CMP 95.8 0.007 2.4E-07 43.2 3.4 20 11-30 4-23 (208)
429 3b60_A Lipid A export ATP-bind 95.8 0.0052 1.8E-07 51.4 3.1 23 11-33 371-393 (582)
430 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0055 1.9E-07 48.2 3.1 19 12-30 26-44 (365)
431 1nlf_A Regulatory protein REPA 95.7 0.0049 1.7E-07 46.4 2.6 21 11-31 32-52 (279)
432 2yhs_A FTSY, cell division pro 95.7 0.0085 2.9E-07 48.9 4.1 85 58-152 376-472 (503)
433 3gmt_A Adenylate kinase; ssgci 95.7 0.0068 2.3E-07 44.4 3.2 23 8-30 7-29 (230)
434 2h92_A Cytidylate kinase; ross 95.7 0.0063 2.1E-07 43.9 3.0 22 9-30 3-24 (219)
435 3zvl_A Bifunctional polynucleo 95.7 0.0097 3.3E-07 47.6 4.3 23 9-31 258-280 (416)
436 2dpy_A FLII, flagellum-specifi 95.7 0.0055 1.9E-07 49.4 2.9 23 11-33 159-181 (438)
437 3bk7_A ABC transporter ATP-bin 95.7 0.0079 2.7E-07 50.5 3.8 24 11-34 119-142 (607)
438 1njg_A DNA polymerase III subu 95.6 0.0066 2.3E-07 44.0 2.9 21 11-31 47-67 (250)
439 3b5x_A Lipid A export ATP-bind 95.6 0.0083 2.8E-07 50.2 3.8 23 11-33 371-393 (582)
440 3bk7_A ABC transporter ATP-bin 95.6 0.0087 3E-07 50.3 3.9 24 11-34 384-407 (607)
441 4a82_A Cystic fibrosis transme 95.6 0.0051 1.7E-07 51.4 2.4 23 11-33 369-391 (578)
442 3qks_A DNA double-strand break 95.6 0.0078 2.7E-07 43.2 3.1 19 12-30 26-44 (203)
443 2chg_A Replication factor C sm 95.6 0.0074 2.5E-07 43.1 3.0 22 11-32 40-61 (226)
444 3n70_A Transport activator; si 95.6 0.0082 2.8E-07 40.5 3.0 24 9-32 24-47 (145)
445 3ozx_A RNAse L inhibitor; ATP 95.6 0.0095 3.3E-07 49.3 3.9 24 11-34 296-319 (538)
446 2yl4_A ATP-binding cassette SU 95.6 0.0054 1.8E-07 51.4 2.4 23 11-33 372-394 (595)
447 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0096 3.3E-07 49.3 3.9 24 11-34 314-337 (538)
448 3ld9_A DTMP kinase, thymidylat 95.5 0.011 3.6E-07 43.2 3.6 29 3-31 15-43 (223)
449 3qf4_B Uncharacterized ABC tra 95.5 0.006 2E-07 51.2 2.6 23 11-33 383-405 (598)
450 1p5z_B DCK, deoxycytidine kina 95.5 0.0067 2.3E-07 45.2 2.6 24 9-32 24-47 (263)
451 3b9p_A CG5977-PA, isoform A; A 95.5 0.0076 2.6E-07 45.7 2.9 24 9-32 54-77 (297)
452 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.0084 2.9E-07 44.4 3.0 22 10-31 40-61 (262)
453 4edh_A DTMP kinase, thymidylat 95.5 0.011 3.7E-07 42.8 3.5 24 7-30 4-27 (213)
454 3h4m_A Proteasome-activating n 95.5 0.0081 2.8E-07 45.2 2.9 24 9-32 51-74 (285)
455 3t15_A Ribulose bisphosphate c 95.4 0.013 4.4E-07 44.5 4.0 22 10-31 37-58 (293)
456 1pzn_A RAD51, DNA repair and r 95.4 0.0072 2.5E-07 47.2 2.6 22 11-32 133-154 (349)
457 2dr3_A UPF0273 protein PH0284; 95.4 0.0082 2.8E-07 43.9 2.8 21 11-31 25-45 (247)
458 3qf4_A ABC transporter, ATP-bi 95.4 0.007 2.4E-07 50.7 2.7 23 11-33 371-393 (587)
459 3j16_B RLI1P; ribosome recycli 95.4 0.012 4.2E-07 49.4 3.9 24 12-35 381-404 (608)
460 3cf0_A Transitional endoplasmi 95.4 0.0091 3.1E-07 45.5 2.9 23 10-32 50-72 (301)
461 1azs_C GS-alpha; complex (lyas 95.3 0.01 3.5E-07 47.2 3.2 24 7-30 38-61 (402)
462 1l8q_A Chromosomal replication 95.3 0.0097 3.3E-07 45.8 2.9 23 10-32 38-60 (324)
463 2qmh_A HPR kinase/phosphorylas 95.3 0.012 4E-07 42.1 3.0 24 10-33 35-58 (205)
464 3syl_A Protein CBBX; photosynt 95.3 0.013 4.4E-07 44.6 3.5 22 9-30 67-88 (309)
465 2ocp_A DGK, deoxyguanosine kin 95.2 0.013 4.3E-07 43.1 3.3 22 10-31 3-24 (241)
466 1sxj_E Activator 1 40 kDa subu 95.2 0.0088 3E-07 46.5 2.5 20 12-31 39-58 (354)
467 2px0_A Flagellar biosynthesis 95.2 0.0099 3.4E-07 45.3 2.7 85 58-152 183-273 (296)
468 3ea0_A ATPase, para family; al 95.2 0.087 3E-06 38.4 7.8 90 57-154 118-207 (245)
469 1a7j_A Phosphoribulokinase; tr 95.2 0.0063 2.2E-07 46.3 1.6 23 8-30 4-26 (290)
470 1vma_A Cell division protein F 95.2 0.012 4E-07 45.1 3.0 86 58-153 187-284 (306)
471 2qby_A CDC6 homolog 1, cell di 95.2 0.01 3.4E-07 46.4 2.7 23 10-32 46-68 (386)
472 3v9p_A DTMP kinase, thymidylat 95.1 0.011 3.9E-07 43.2 2.7 23 9-31 25-47 (227)
473 1fnn_A CDC6P, cell division co 95.1 0.011 3.9E-07 46.3 2.9 22 11-32 46-67 (389)
474 3exa_A TRNA delta(2)-isopenten 95.1 0.016 5.3E-07 44.5 3.5 23 9-31 3-25 (322)
475 3qkt_A DNA double-strand break 95.1 0.013 4.4E-07 45.6 3.1 18 13-30 27-44 (339)
476 3lv8_A DTMP kinase, thymidylat 95.1 0.014 4.7E-07 43.0 3.1 24 7-30 25-48 (236)
477 1ofh_A ATP-dependent HSL prote 95.1 0.013 4.5E-07 44.4 3.0 22 10-31 51-72 (310)
478 1tf7_A KAIC; homohexamer, hexa 95.1 0.011 3.8E-07 48.7 2.8 19 12-30 42-60 (525)
479 1d2n_A N-ethylmaleimide-sensit 95.1 0.019 6.4E-07 42.9 3.8 25 8-32 63-87 (272)
480 1sxj_C Activator 1 40 kDa subu 95.0 0.014 4.7E-07 45.3 2.9 22 11-32 48-69 (340)
481 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.014 4.8E-07 45.0 2.9 23 10-32 46-68 (322)
482 3cwq_A Para family chromosome 94.9 0.073 2.5E-06 38.2 6.5 85 58-149 68-153 (209)
483 3u61_B DNA polymerase accessor 94.9 0.15 5.3E-06 38.9 8.8 21 12-32 51-71 (324)
484 1c9k_A COBU, adenosylcobinamid 94.9 0.016 5.4E-07 40.8 2.8 21 12-32 2-22 (180)
485 2ga8_A Hypothetical 39.9 kDa p 94.9 0.026 8.8E-07 44.1 4.2 22 9-30 24-45 (359)
486 2iw3_A Elongation factor 3A; a 94.9 0.016 5.6E-07 51.1 3.4 24 11-34 463-486 (986)
487 4fcw_A Chaperone protein CLPB; 94.9 0.024 8.4E-07 43.0 4.1 23 10-32 48-70 (311)
488 3lda_A DNA repair protein RAD5 94.9 0.014 4.9E-07 46.4 2.8 20 11-30 180-199 (400)
489 3foz_A TRNA delta(2)-isopenten 94.9 0.023 8E-07 43.5 3.8 21 10-30 11-31 (316)
490 3uc9_A Increased recombination 94.8 0.035 1.2E-06 40.5 4.5 27 7-33 27-53 (233)
491 1e69_A Chromosome segregation 94.8 0.012 4E-07 45.4 2.1 20 11-30 26-45 (322)
492 2qen_A Walker-type ATPase; unk 94.8 0.018 6E-07 44.4 3.1 22 11-32 33-54 (350)
493 2iw3_A Elongation factor 3A; a 94.8 0.012 4.2E-07 51.9 2.4 24 11-34 701-724 (986)
494 3eie_A Vacuolar protein sortin 94.8 0.018 6.1E-07 44.3 3.1 23 9-31 51-73 (322)
495 1wcv_1 SOJ, segregation protei 94.8 0.086 2.9E-06 39.0 6.7 67 57-126 111-181 (257)
496 4ag6_A VIRB4 ATPase, type IV s 94.7 0.018 6.1E-07 45.6 3.0 24 9-32 35-58 (392)
497 2v1u_A Cell division control p 94.7 0.015 5.2E-07 45.4 2.6 24 9-32 44-67 (387)
498 3a8t_A Adenylate isopentenyltr 94.7 0.025 8.4E-07 43.9 3.6 22 10-31 41-62 (339)
499 2o5v_A DNA replication and rep 94.7 0.019 6.5E-07 45.0 3.0 20 11-30 28-47 (359)
500 1sxj_D Activator 1 41 kDa subu 94.7 0.019 6.3E-07 44.5 3.0 22 11-32 60-81 (353)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.3e-45 Score=268.36 Aligned_cols=200 Identities=73% Similarity=1.172 Sum_probs=147.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
++++++||+|+|.+|+|||||+++|+.+.|...+.++.+.++..+.+..++..+.+.||||+|+++|..++..|++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
+++|||++++.+|+.+..|+..+......++|++||+||+|+.+.+.+..+++..++..+++.+++|||++|.||+++|+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999988888899999999999998899999999999999999999999999999999999
Q ss_pred HHHHHcCCCccCcccccccccccccCCCCCCccCCCCCCCccC
Q 028546 165 KIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC 207 (207)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (207)
.|++.+...+............+.... +...+.+.++|||
T Consensus 169 ~i~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~C~C 208 (216)
T 4dkx_A 169 RVAAALPGMESTQDRSREDMIDIKLEK---PQEQPVSEGGCSC 208 (216)
T ss_dssp HHHHHC-------------------------------------
T ss_pred HHHHHHHhhhcccccccccccccccCC---CCCCCCCCCCCce
Confidence 999999876655444433333332221 1224456677887
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.7e-38 Score=232.24 Aligned_cols=174 Identities=39% Similarity=0.623 Sum_probs=156.8
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (207)
|+. +....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++.
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 1 MNS-EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp --C-CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred CCc-ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence 543 3455799999999999999999999999998888888888888888888998899999999999999999999999
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
++|++|+|||++++.+++.+..|+..+........|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999999999999988776689999999999998888888888888999999999999999999999
Q ss_pred HHHHHHHHHcCCCcc
Q 028546 161 PLFRKIAAALPGMET 175 (207)
Q Consensus 161 ~~~~~l~~~~~~~~~ 175 (207)
++|++|.+.+.+...
T Consensus 160 ~l~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 160 DAFLTMARQIKESMS 174 (206)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998875543
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.4e-36 Score=223.01 Aligned_cols=172 Identities=37% Similarity=0.628 Sum_probs=148.0
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (207)
|++ +....++|+|+|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++.
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (207)
T 1vg8_A 1 MTS-RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79 (207)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT
T ss_pred CCc-ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh
Confidence 444 3456799999999999999999999999988888888888888888888888889999999999999999999999
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCC
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EFGVMFIETSAKA 155 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~ 155 (207)
++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+....+....++. ..+++++++||++
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 99999999999999999999999998876543 468999999999996 55566777777777 5678999999999
Q ss_pred CCChHHHHHHHHHHcCCCc
Q 028546 156 GFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~~ 174 (207)
|.|++++|++|.+.+.+..
T Consensus 159 g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 159 AINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TBSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999987543
No 4
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=219.65 Aligned_cols=171 Identities=34% Similarity=0.634 Sum_probs=146.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45599999999999999999999999998777888888888888888988889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+......++|++||+||+|+.+.+++..+++..++..++++++++||++|.|++++|++|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766679999999999998777888888888999999999999999999999999999
Q ss_pred HHHcCCCccCc
Q 028546 167 AAALPGMETLS 177 (207)
Q Consensus 167 ~~~~~~~~~~~ 177 (207)
.+.+.+.....
T Consensus 171 ~~~i~~~~~~~ 181 (223)
T 3cpj_B 171 INTIYQKVSKH 181 (223)
T ss_dssp HHHHTTCC---
T ss_pred HHHHHHHhhhc
Confidence 99987665443
No 5
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=214.75 Aligned_cols=168 Identities=33% Similarity=0.570 Sum_probs=148.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+.++.++|+|+|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++++...+..++..+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 456679999999999999999999999988777666666444 4566778888899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
+++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+++..+++..++..++++++++|+++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887653 578999999999998878888888999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 028546 164 RKIAAALPGM 173 (207)
Q Consensus 164 ~~l~~~~~~~ 173 (207)
++|.+.+.+.
T Consensus 169 ~~l~~~i~~~ 178 (206)
T 2bov_A 169 FDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998754
No 6
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.8e-34 Score=205.67 Aligned_cols=169 Identities=42% Similarity=0.757 Sum_probs=153.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
....+||+++|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45569999999999999999999999998877778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++...++..++++++++|+++|.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998877668999999999999888888888899999999999999999999999999999
Q ss_pred HHHHcCCCc
Q 028546 166 IAAALPGME 174 (207)
Q Consensus 166 l~~~~~~~~ 174 (207)
|.+.+...+
T Consensus 169 l~~~~~~~~ 177 (181)
T 2efe_B 169 IARRLPRVQ 177 (181)
T ss_dssp HHHTCC---
T ss_pred HHHHHHhcC
Confidence 999887654
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.5e-34 Score=207.90 Aligned_cols=174 Identities=32% Similarity=0.441 Sum_probs=152.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+..+.++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 445689999999999999999999998888877778777666 6777888888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
+++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 9999999999999999999998866543 478999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHcCCCccCccc
Q 028546 164 RKIAAALPGMETLSST 179 (207)
Q Consensus 164 ~~l~~~~~~~~~~~~~ 179 (207)
++|.+.+.........
T Consensus 161 ~~l~~~~~~~~~~~~~ 176 (181)
T 3t5g_A 161 RRIILEAEKMDGACSQ 176 (181)
T ss_dssp HHHHHHHHTC-----C
T ss_pred HHHHHHHHHhcCCccc
Confidence 9999999877654443
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=208.84 Aligned_cols=167 Identities=39% Similarity=0.692 Sum_probs=156.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 45899999999999999999999999988888999999999999999988999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+.......++..++++++++|+++|.|++++|++|.
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999888777899999999999988888888899999999999999999999999999999999
Q ss_pred HHcCCCc
Q 028546 168 AALPGME 174 (207)
Q Consensus 168 ~~~~~~~ 174 (207)
+.+.+..
T Consensus 175 ~~i~~~~ 181 (196)
T 3tkl_A 175 AEIKKRM 181 (196)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9987543
No 9
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.3e-34 Score=203.68 Aligned_cols=166 Identities=41% Similarity=0.797 Sum_probs=152.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.++++|+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999988777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+++.+..++...++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777788888888999999999999999999999999999
Q ss_pred HHHcCC
Q 028546 167 AAALPG 172 (207)
Q Consensus 167 ~~~~~~ 172 (207)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1r2q_A 164 AKKLPK 169 (170)
T ss_dssp HHTSCC
T ss_pred HHHHhh
Confidence 988754
No 10
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-34 Score=203.18 Aligned_cols=165 Identities=44% Similarity=0.793 Sum_probs=151.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
++++|+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 57999999999999999999999999887778888888888888889888999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC---CCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK---RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
|+|++++.+++.+..|+..+......+.|+++|+||+|+.++ +++..+....++..++++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877678999999999999765 66777888888888999999999999999999999
Q ss_pred HHHHHcCC
Q 028546 165 KIAAALPG 172 (207)
Q Consensus 165 ~l~~~~~~ 172 (207)
+|.+.+.+
T Consensus 162 ~l~~~i~~ 169 (170)
T 1ek0_A 162 GIGEKIPL 169 (170)
T ss_dssp HHHTTSCC
T ss_pred HHHHHHhh
Confidence 99987753
No 11
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=3.3e-34 Score=205.46 Aligned_cols=168 Identities=82% Similarity=1.260 Sum_probs=153.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
++++++|+|+|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++.++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999999888888888888888888999888999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++++...+...++..++++++++|+++|.|++++|++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776667999999999999888888888888889999999999999999999999999
Q ss_pred HHHHcCCC
Q 028546 166 IAAALPGM 173 (207)
Q Consensus 166 l~~~~~~~ 173 (207)
|.+.+.+.
T Consensus 171 l~~~~~~~ 178 (179)
T 2y8e_A 171 VAAALPGM 178 (179)
T ss_dssp HHHTCC--
T ss_pred HHHHHhhc
Confidence 99987653
No 12
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.2e-34 Score=204.87 Aligned_cols=168 Identities=35% Similarity=0.647 Sum_probs=153.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+....++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34557999999999999999999999999887777888888888888889888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++++..+++..++..++++++++|+++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987788888889999999999999999999999999999
Q ss_pred HHHHHcCC
Q 028546 165 KIAAALPG 172 (207)
Q Consensus 165 ~l~~~~~~ 172 (207)
+|.+.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99998753
No 13
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=5.6e-34 Score=206.88 Aligned_cols=170 Identities=35% Similarity=0.689 Sum_probs=151.1
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (207)
.......+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 34456679999999999999999999999998877778888888888888898889999999999999999999999999
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHH
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (207)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++...++..++++++++||++|.|++++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876678999999999999877788888889999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028546 163 FRKIAAALPG 172 (207)
Q Consensus 163 ~~~l~~~~~~ 172 (207)
|++|.+.+.+
T Consensus 175 ~~~l~~~i~~ 184 (191)
T 2a5j_A 175 FINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 14
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=3e-34 Score=204.14 Aligned_cols=166 Identities=39% Similarity=0.685 Sum_probs=145.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999988777888888888788888888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++++..++...++..++++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999998877665679999999999998878888888999999999999999999999999999999
Q ss_pred HHHcCC
Q 028546 167 AAALPG 172 (207)
Q Consensus 167 ~~~~~~ 172 (207)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988754
No 15
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.1e-34 Score=203.50 Aligned_cols=169 Identities=41% Similarity=0.702 Sum_probs=144.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
....++|+++|++|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999998885 4567788888888888889988899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
+|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++++..+....++..++++++++||++|.|++++|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887766899999999999988888888888889999999999999999999999999
Q ss_pred HHHHHcCCCc
Q 028546 165 KIAAALPGME 174 (207)
Q Consensus 165 ~l~~~~~~~~ 174 (207)
+|.+.+.+..
T Consensus 167 ~l~~~~~~~~ 176 (180)
T 2g6b_A 167 AIAKELKRRS 176 (180)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 9999887544
No 16
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-34 Score=209.41 Aligned_cols=169 Identities=36% Similarity=0.652 Sum_probs=154.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
.....+||+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||.+++...+..++.++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 34557999999999999999999999999887778888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999877666799999999999988888888888999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028546 165 KIAAALPGM 173 (207)
Q Consensus 165 ~l~~~~~~~ 173 (207)
+|.+.+.+.
T Consensus 164 ~l~~~i~~~ 172 (203)
T 1zbd_A 164 RLVDVICEK 172 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987643
No 17
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.7e-34 Score=208.62 Aligned_cols=166 Identities=39% Similarity=0.659 Sum_probs=153.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 44699999999999999999999999998888888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|++|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776779999999999998778888888888888899999999999999999999999
Q ss_pred HHHcCC
Q 028546 167 AAALPG 172 (207)
Q Consensus 167 ~~~~~~ 172 (207)
.+.+.+
T Consensus 184 ~~~i~~ 189 (201)
T 2ew1_A 184 ACRLIS 189 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 18
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.5e-34 Score=207.12 Aligned_cols=167 Identities=42% Similarity=0.735 Sum_probs=125.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...++|+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45799999999999999999999999888777888888888888888988899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766679999999999998878888888899999999999999999999999999999
Q ss_pred HHHcCCC
Q 028546 167 AAALPGM 173 (207)
Q Consensus 167 ~~~~~~~ 173 (207)
.+.+.+.
T Consensus 166 ~~~i~~~ 172 (183)
T 2fu5_C 166 ARDIKAK 172 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=205.45 Aligned_cols=168 Identities=38% Similarity=0.672 Sum_probs=152.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++.++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999999888888999888889999999889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+.+.+.......++...+++++++|+++|.|++++|++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999887654 6999999999999888888888899999999999999999999999999999
Q ss_pred HHHHcCCCc
Q 028546 166 IAAALPGME 174 (207)
Q Consensus 166 l~~~~~~~~ 174 (207)
|.+.+.+..
T Consensus 165 l~~~~~~~~ 173 (181)
T 3tw8_B 165 ITELVLRAK 173 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999886544
No 20
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.3e-33 Score=200.71 Aligned_cols=166 Identities=39% Similarity=0.717 Sum_probs=153.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+.+..+.+.+||+||.+++...+..++.++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999988777888888888888888988899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+........|+++|+||+|+.+.+++..+....++..++++++++|+++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988767789999999999998878888888888999999999999999999999999999
Q ss_pred HHHcCC
Q 028546 167 AAALPG 172 (207)
Q Consensus 167 ~~~~~~ 172 (207)
.+.+.+
T Consensus 164 ~~~i~~ 169 (170)
T 1z0j_A 164 SRRIPS 169 (170)
T ss_dssp HHHCCC
T ss_pred HHHHhc
Confidence 998753
No 21
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=7.7e-34 Score=205.77 Aligned_cols=167 Identities=38% Similarity=0.712 Sum_probs=152.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++++...+..++.++|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 34569999999999999999999999998877778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++|+++|.|++++|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876667999999999999887888888889999999999999999999999999999
Q ss_pred HHHHcCC
Q 028546 166 IAAALPG 172 (207)
Q Consensus 166 l~~~~~~ 172 (207)
|.+.+.+
T Consensus 179 l~~~i~~ 185 (189)
T 2gf9_A 179 LVDVICE 185 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 22
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=4.6e-34 Score=206.14 Aligned_cols=168 Identities=35% Similarity=0.617 Sum_probs=154.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 35579999999999999999999999999888888888888888888899888999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|+|||++++.+++.+..|+..+......++|+++|+||+|+.+++.+...+...++...+++++++|+++|.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877788888888899999999999999999999999999
Q ss_pred HHHHcCCC
Q 028546 166 IAAALPGM 173 (207)
Q Consensus 166 l~~~~~~~ 173 (207)
|.+.+.+.
T Consensus 167 l~~~~~~~ 174 (186)
T 2bme_A 167 CARKILNK 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988643
No 23
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=210.63 Aligned_cols=168 Identities=42% Similarity=0.718 Sum_probs=145.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+....+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 33456999999999999999999999999887777888878888888888888899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLF 163 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~ 163 (207)
+|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++..+++ +++++||++|.|++++|
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766899999999999987778888889999999999 99999999999999999
Q ss_pred HHHHHHcCC
Q 028546 164 RKIAAALPG 172 (207)
Q Consensus 164 ~~l~~~~~~ 172 (207)
++|.+.+.+
T Consensus 185 ~~l~~~i~~ 193 (201)
T 2hup_A 185 LRVATELIM 193 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 24
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-33 Score=205.73 Aligned_cols=167 Identities=40% Similarity=0.745 Sum_probs=152.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.+||+|+|++|+|||||+++|++..+.....++.+.+.....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999999988777888888888888888888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+++..++...++..++++++++|+++|.|++++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988776679999999999998777888888999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028546 167 AAALPGM 173 (207)
Q Consensus 167 ~~~~~~~ 173 (207)
.+.+.+.
T Consensus 181 ~~~i~~~ 187 (192)
T 2fg5_A 181 SRQIPPL 187 (192)
T ss_dssp HHTCC--
T ss_pred HHHHHhh
Confidence 9988654
No 25
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=206.03 Aligned_cols=166 Identities=29% Similarity=0.485 Sum_probs=142.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...++|+++|++|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++++...+..++.++|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4569999999999999999999999988766666665333 345667888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 164 (207)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ++...+....++..++++++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999888887766543 3689999999999864 55667788888888999999999999999999999
Q ss_pred HHHHHcCCCc
Q 028546 165 KIAAALPGME 174 (207)
Q Consensus 165 ~l~~~~~~~~ 174 (207)
+|.+.+.+..
T Consensus 164 ~l~~~~~~~~ 173 (199)
T 2gf0_A 164 ELLTLETRRN 173 (199)
T ss_dssp HHHHHCSSSC
T ss_pred HHHHHHhhhh
Confidence 9999987654
No 26
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=8.1e-34 Score=203.40 Aligned_cols=169 Identities=34% Similarity=0.523 Sum_probs=149.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccccCCE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
..+.++|+|+|++|+|||||+++|.++.+...+.++.+.+.....+.+++ ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999988777777887788888888876 56899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (207)
+|+|||++++.+++.+..|+..+..... ...|+++|+||+|+.+.+.+..++...++..++++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999988876432 3344899999999987778888888889999999999999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028546 162 LFRKIAAALPGME 174 (207)
Q Consensus 162 ~~~~l~~~~~~~~ 174 (207)
+|++|.+.+.+..
T Consensus 163 l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 163 CFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987654
No 27
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=6.1e-34 Score=206.57 Aligned_cols=173 Identities=38% Similarity=0.614 Sum_probs=151.5
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeee-EEEEEECCe---------EEEEEEEecCChhh
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER 70 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~ 70 (207)
|++.+....++|+|+|++|+|||||+++|.++.+...+.++.+.++. ...+..++. .+.+.+||+||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 55555566799999999999999999999999888777788887776 566666655 68999999999999
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFI 149 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (207)
+...+..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+.+..++..++++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999999887664 5799999999999987778888888989999999999
Q ss_pred EEecCCCCChHHHHHHHHHHcCCC
Q 028546 150 ETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
++|+++|.|++++|++|.+.+.+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988643
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.3e-33 Score=202.73 Aligned_cols=168 Identities=30% Similarity=0.486 Sum_probs=149.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+.++.++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..++.++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 4466799999999999999999999999888777777776654 667788888899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
+++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+++..+....++...+++++++|+++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999999999888444 34578999999999998878888888888988999999999999999999999
Q ss_pred HHHHHHcCCC
Q 028546 164 RKIAAALPGM 173 (207)
Q Consensus 164 ~~l~~~~~~~ 173 (207)
++|.+.+.+.
T Consensus 164 ~~l~~~~~~~ 173 (181)
T 2fn4_A 164 EQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988644
No 29
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=203.81 Aligned_cols=169 Identities=33% Similarity=0.624 Sum_probs=153.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (207)
.+....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||.+++...+..++.++|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 34455699999999999999999999999988777888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766679999999999998877888888888998999999999999999999999
Q ss_pred HHHHHHcCC
Q 028546 164 RKIAAALPG 172 (207)
Q Consensus 164 ~~l~~~~~~ 172 (207)
++|.+.+.+
T Consensus 180 ~~l~~~i~~ 188 (193)
T 2oil_A 180 ETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 30
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4.8e-34 Score=210.41 Aligned_cols=173 Identities=32% Similarity=0.509 Sum_probs=145.7
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (207)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (207)
+.|+..+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..++.+
T Consensus 2 s~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 80 (212)
T 2j0v_A 2 SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG 80 (212)
T ss_dssp CCCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTT
T ss_pred CCCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccC
Confidence 356667889999999999999999999999988777777766444 4556678888899999999999999999999999
Q ss_pred CCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--------CCHHHHHHHHHHhCC-eEEEE
Q 028546 82 SSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--------VSIEEGDGKAKEFGV-MFIET 151 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~ 151 (207)
+|++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+++. +..++...++..+++ +++++
T Consensus 81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 81 ADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC 159 (212)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence 99999999999999999986 79988877654 699999999999866543 367778888888886 99999
Q ss_pred ecCCCCChHHHHHHHHHHcCCCccC
Q 028546 152 SAKAGFNIKPLFRKIAAALPGMETL 176 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~~~~~~~ 176 (207)
||++|.|++++|++|.+.+......
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC---
T ss_pred cCCCCCCHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999998765443
No 31
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3e-33 Score=201.48 Aligned_cols=166 Identities=31% Similarity=0.529 Sum_probs=150.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
...+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345679999999999999999999999988878777777666 6777888888899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC-CCCChHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK-AGFNIKPL 162 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~ 162 (207)
+|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++..++++++++|++ +|.|++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 999999999999999999999886643 3578999999999998888899999999999999999999999 99999999
Q ss_pred HHHHHHHcC
Q 028546 163 FRKIAAALP 171 (207)
Q Consensus 163 ~~~l~~~~~ 171 (207)
|++|.+.+.
T Consensus 173 ~~~l~~~i~ 181 (183)
T 3kkq_A 173 FHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998775
No 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.7e-33 Score=199.72 Aligned_cols=165 Identities=38% Similarity=0.656 Sum_probs=150.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++.++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+++++..++...++..++++++++|+++|.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999887765 468999999999998877888888888999999999999999999999999999
Q ss_pred HHHcCC
Q 028546 167 AAALPG 172 (207)
Q Consensus 167 ~~~~~~ 172 (207)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 987753
No 33
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.2e-34 Score=207.30 Aligned_cols=167 Identities=36% Similarity=0.646 Sum_probs=143.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
....+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45679999999999999999999999998877788888888888888898888999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998776678999999999999877788888888899999999999999999999999999
Q ss_pred HHHHcCC
Q 028546 166 IAAALPG 172 (207)
Q Consensus 166 l~~~~~~ 172 (207)
|.+.+.+
T Consensus 182 l~~~i~~ 188 (200)
T 2o52_A 182 CARTILN 188 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 34
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.8e-34 Score=205.85 Aligned_cols=167 Identities=35% Similarity=0.666 Sum_probs=145.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
+....++|+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++++...+..++.++|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34556999999999999999999999999887778888888888888899888899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCChHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~ 163 (207)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++...++..+ +++++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999988877778999999999999887888888888888875 7899999999999999999
Q ss_pred HHHHHHcC
Q 028546 164 RKIAAALP 171 (207)
Q Consensus 164 ~~l~~~~~ 171 (207)
++|.+.+.
T Consensus 182 ~~l~~~i~ 189 (192)
T 2il1_A 182 LKLVDDIL 189 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998774
No 35
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.3e-33 Score=200.65 Aligned_cols=165 Identities=38% Similarity=0.745 Sum_probs=144.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999887778888888888888888888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....+....++..++++++++|+++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998877668999999999999 5556777888888889999999999999999999999999
Q ss_pred HHcCCC
Q 028546 168 AALPGM 173 (207)
Q Consensus 168 ~~~~~~ 173 (207)
+.+.+.
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988643
No 36
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=208.85 Aligned_cols=173 Identities=32% Similarity=0.473 Sum_probs=144.5
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (207)
.++..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 45667789999999999999999999999999877777776655 55666667778999999999999999999999999
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (207)
|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+...+...++..++++++++||++|.|+++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQG 176 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999998876533 4689999999999988888888999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccC
Q 028546 162 LFRKIAAALPGMETL 176 (207)
Q Consensus 162 ~~~~l~~~~~~~~~~ 176 (207)
+|++|.+.+.+....
T Consensus 177 l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 177 IFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999998765443
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.4e-33 Score=203.17 Aligned_cols=168 Identities=37% Similarity=0.618 Sum_probs=147.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc-cccccccccCC
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSS 83 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d 83 (207)
...+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++. ..+..+++++|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34567999999999999999999999999988888888888888888889988899999999999988 88899999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC---CCh
Q 028546 84 VAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG---FNI 159 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~i 159 (207)
++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+....++..++++++++|++++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999999988765 457999999999999888888888889999999999999999999 999
Q ss_pred HHHHHHHHHHcCC
Q 028546 160 KPLFRKIAAALPG 172 (207)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (207)
+++|++|.+.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 38
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=206.23 Aligned_cols=169 Identities=39% Similarity=0.641 Sum_probs=139.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (207)
.+..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 44556799999999999999999999999987777788888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC------CCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q 028546 84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV------DKRQVSIEEGDGKAKEFGVMFIETSAKAGF 157 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (207)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+. ..+.+..+....++..++++++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999999999887766679999999999986 346677788888898999999999999999
Q ss_pred ChHHHHHHHHHHcCC
Q 028546 158 NIKPLFRKIAAALPG 172 (207)
Q Consensus 158 ~i~~~~~~l~~~~~~ 172 (207)
|++++|++|.+.+.+
T Consensus 183 gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 183 NIVEAVLHLAREVKK 197 (199)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998764
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=204.78 Aligned_cols=169 Identities=26% Similarity=0.365 Sum_probs=145.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-ccccccccCCE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSV 84 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 84 (207)
....+||+|+|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+||++|++++.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 35569999999999999999999986655444455666666777788899889999999999987765 67778899999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
+|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence 9999999999999999999998877653 479999999999998888888888888999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028546 164 RKIAAALPGME 174 (207)
Q Consensus 164 ~~l~~~~~~~~ 174 (207)
++|.+.+.+.+
T Consensus 180 ~~l~~~i~~~~ 190 (195)
T 3cbq_A 180 EGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 99999886543
No 40
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=4.3e-33 Score=197.42 Aligned_cols=165 Identities=33% Similarity=0.580 Sum_probs=144.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
++.++|+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++++...+..++.++|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 5689999999999999999999999988766666665444 445677888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+++++..++...++..++++++++|+++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999998877654 47999999999999888888888899999999999999999999999999999
Q ss_pred HHHHcCC
Q 028546 166 IAAALPG 172 (207)
Q Consensus 166 l~~~~~~ 172 (207)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998753
No 41
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-34 Score=209.89 Aligned_cols=167 Identities=36% Similarity=0.674 Sum_probs=153.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...+||+|+|++|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 45699999999999999999999999988887888888888888888887789999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++|+++|.|++++|++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998888888999999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028546 167 AAALPGM 173 (207)
Q Consensus 167 ~~~~~~~ 173 (207)
.+.+.+.
T Consensus 181 ~~~i~~~ 187 (191)
T 3dz8_A 181 VDAICDK 187 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987543
No 42
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6e-33 Score=201.64 Aligned_cols=169 Identities=38% Similarity=0.687 Sum_probs=151.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+|+|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45699999999999999999999999988888888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
+|||++++.++..+..|+..+..... .++|+++|+||+|+ ..+++..++...++..++++++++|++++.|++++|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC-cccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998876542 57899999999998 45567778888889999999999999999999999999
Q ss_pred HHHHcCCCccC
Q 028546 166 IAAALPGMETL 176 (207)
Q Consensus 166 l~~~~~~~~~~ 176 (207)
|.+.+.+....
T Consensus 172 l~~~~~~~~~~ 182 (195)
T 1x3s_A 172 LVEKIIQTPGL 182 (195)
T ss_dssp HHHHHHTSGGG
T ss_pred HHHHHHhhhhh
Confidence 99998765443
No 43
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=3.3e-33 Score=201.99 Aligned_cols=166 Identities=31% Similarity=0.534 Sum_probs=143.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.++++|+++|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999988766666654 455566778888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ......+....++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998877543 579999999999986 4566778888899999999999999999999999999
Q ss_pred HHHHcCCCc
Q 028546 166 IAAALPGME 174 (207)
Q Consensus 166 l~~~~~~~~ 174 (207)
|.+.+....
T Consensus 160 l~~~~~~~~ 168 (189)
T 4dsu_A 160 LVREIRKHK 168 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987544
No 44
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=6.1e-33 Score=204.43 Aligned_cols=166 Identities=39% Similarity=0.736 Sum_probs=150.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 44699999999999999999999999988788888888888888888998889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|||++++.+++.+..|+..+......++|+++|+||+|+ ..+....+....++..++++++++|+++|.|++++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999998877667999999999999 556677788888888899999999999999999999999
Q ss_pred HHHcCCC
Q 028546 167 AAALPGM 173 (207)
Q Consensus 167 ~~~~~~~ 173 (207)
.+.+.+.
T Consensus 177 ~~~~~~~ 183 (213)
T 3cph_A 177 AKLIQEK 183 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987643
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=5.8e-33 Score=196.78 Aligned_cols=164 Identities=30% Similarity=0.543 Sum_probs=144.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
++++||+++|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++++...+..++.++|+++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 3579999999999999999999999988777777666544 355667777889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCChHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~ 164 (207)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+++.+..++...++..+ +++++++||++|.|++++|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 9999999999999999998887653 357999999999999888888888888888887 78999999999999999999
Q ss_pred HHHHHcC
Q 028546 165 KIAAALP 171 (207)
Q Consensus 165 ~l~~~~~ 171 (207)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998774
No 46
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.3e-32 Score=196.92 Aligned_cols=166 Identities=37% Similarity=0.611 Sum_probs=145.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 45699999999999999999999999988888888888888888889998889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCCChHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~ 161 (207)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .++...+++..++. ..+++++++|+++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999998876653 578999999999986 56677778888877 5678999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028546 162 LFRKIAAALPGM 173 (207)
Q Consensus 162 ~~~~l~~~~~~~ 173 (207)
+|++|.+.+.+.
T Consensus 164 l~~~l~~~~~~~ 175 (177)
T 1wms_A 164 AFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh
Confidence 999999988653
No 47
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=201.45 Aligned_cols=166 Identities=26% Similarity=0.421 Sum_probs=141.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (207)
.+..+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+... ..+++++|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 4456779999999999999999999999998877777777554 455677888899999999999988774 67889999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec-CCCCCh
Q 028546 84 VAVIVYDVANRQSFLNTSRWIEEVRTER---GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSA-KAGFNI 159 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~i 159 (207)
++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++++++|| ++|.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 9999999999999999999999887653 247999999999999887888889999999999999999999 899999
Q ss_pred HHHHHHHHHHcC
Q 028546 160 KPLFRKIAAALP 171 (207)
Q Consensus 160 ~~~~~~l~~~~~ 171 (207)
+++|++|.+.+.
T Consensus 174 ~~lf~~l~~~i~ 185 (187)
T 3c5c_A 174 QHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 48
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=5.8e-33 Score=197.34 Aligned_cols=164 Identities=27% Similarity=0.386 Sum_probs=134.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-ccccccccCCEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVI 87 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~il 87 (207)
.+||+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++++.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999998877766666677778888888999999999999999998876 67778899999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+++..++...++..++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999887654 479999999999998888899999999999999999999999999999999999
Q ss_pred HHHcCC
Q 028546 167 AAALPG 172 (207)
Q Consensus 167 ~~~~~~ 172 (207)
.+.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 49
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.9e-32 Score=199.17 Aligned_cols=168 Identities=32% Similarity=0.517 Sum_probs=147.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
..+.+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 345699999999999999999999999987777777765554 4667888888999999999999999999999999999
Q ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC--CCCCHHHHHHHHHHhCCe-EEEEecCCCCChHH
Q 028546 86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK--RQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKP 161 (207)
Q Consensus 86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~ 161 (207)
|+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.++ +.+..++...++..+++. ++++||++|.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999997 77888777654 46999999999999754 667888899999999997 99999999999999
Q ss_pred HHHHHHHHcCCCcc
Q 028546 162 LFRKIAAALPGMET 175 (207)
Q Consensus 162 ~~~~l~~~~~~~~~ 175 (207)
+|++|.+.+.+.+.
T Consensus 178 l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 178 VFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999876543
No 50
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=8e-34 Score=209.94 Aligned_cols=169 Identities=37% Similarity=0.626 Sum_probs=149.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe----------EEEEEEEecCChhhhccc
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSL 74 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~ 74 (207)
+....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.+||+||++++...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3455699999999999999999999999987777777777777777777665 689999999999999999
Q ss_pred cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q 028546 75 IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSA 153 (207)
Q Consensus 75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 153 (207)
+..++.++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+....++..++++++++|+
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 99999999999999999999999999999887765443 57999999999999887788888899999999999999999
Q ss_pred CCCCChHHHHHHHHHHcCCC
Q 028546 154 KAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~~ 173 (207)
++|.|++++|++|.+.+.+.
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 51
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.6e-32 Score=199.48 Aligned_cols=165 Identities=38% Similarity=0.665 Sum_probs=146.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE--------------------------
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT-------------------------- 57 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 57 (207)
|+..+.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 455678999999999999999999999999887778888878777777776654
Q ss_pred -----------EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 58 -----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 58 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
+.+.+||+||++.+...+..+++.+|++|+|+|++++.+++.+..|+..+..... .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-
Confidence 7999999999999999999999999999999999999999999999999887654 89999999999
Q ss_pred CCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
...++...+++..++..++++++++||++|.|++++|++|.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 566778888899999999999999999999999999999998775
No 52
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.6e-33 Score=200.73 Aligned_cols=169 Identities=30% Similarity=0.485 Sum_probs=146.2
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (207)
|++++..+.++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 88 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 88 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence 4455555679999999999999999999999988777677766544 455677777889999999999999999999999
Q ss_pred cCCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-
Q 028546 81 DSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV- 146 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~- 146 (207)
++|++|+|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+. +.+..++...++..+++
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 999999999999999999987 78888877654 6899999999999754 46777888889998898
Q ss_pred eEEEEecCCCCChHHHHHHHHHHcC
Q 028546 147 MFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
+++++||++|.|++++|++|.+.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 53
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=6.7e-33 Score=204.80 Aligned_cols=170 Identities=26% Similarity=0.466 Sum_probs=145.0
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (207)
...+..+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++...+..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3456779999999999999999999999999887778777665 455667777889999999999999999999999999
Q ss_pred EEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEE
Q 028546 84 VAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFI 149 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~ 149 (207)
++|+|||++++.+++. +..|+..+.... .++|+++|+||+|+.++ +.+..++...++..+++ +++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999 789999988765 47999999999999763 67888999999999999 999
Q ss_pred EEecCCCCC-hHHHHHHHHHHcCCCcc
Q 028546 150 ETSAKAGFN-IKPLFRKIAAALPGMET 175 (207)
Q Consensus 150 ~~s~~~~~~-i~~~~~~l~~~~~~~~~ 175 (207)
++||++|.| ++++|++|.+.+.....
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCc
Confidence 999999998 99999999998875543
No 54
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-33 Score=202.74 Aligned_cols=170 Identities=32% Similarity=0.476 Sum_probs=145.1
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (207)
|.++...+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..++.
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 4566677889999999999999999999999998777777776544 45567788888999999999887 677888899
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-C
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF-N 158 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~ 158 (207)
.+|++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+++..++...++..++++++++|+++|. |
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGN 177 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence 9999999999999999999999998887754 3579999999999998878888888999999999999999999999 9
Q ss_pred hHHHHHHHHHHcCC
Q 028546 159 IKPLFRKIAAALPG 172 (207)
Q Consensus 159 i~~~~~~l~~~~~~ 172 (207)
++++|++|.+.+.+
T Consensus 178 i~~l~~~l~~~i~~ 191 (196)
T 2atv_A 178 ITEIFYELCREVRR 191 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 55
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.1e-32 Score=199.11 Aligned_cols=164 Identities=17% Similarity=0.325 Sum_probs=141.6
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (207)
....++++||+++|++|+|||||+++|+++.+...+.++. ......+.+++..+.+.+|||+|++.+. +++++
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 3456778999999999999999999999999887666653 3344778889988999999999988776 78899
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHhC-CeEEEEecCCCCC
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLV--DKRQVSIEEGDGKAKEFG-VMFIETSAKAGFN 158 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 158 (207)
|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.+..+++..++..++ +.++++||++|.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999999987653 468999999999984 466788888999999987 8999999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 028546 159 IKPLFRKIAAALPGM 173 (207)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (207)
++++|++|.+.+.+.
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987643
No 56
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=197.27 Aligned_cols=165 Identities=35% Similarity=0.462 Sum_probs=134.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh--hccccccccccCCE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV 84 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 84 (207)
.+.+||+++|++|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+||+||++. +......++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 45799999999999999999999998876543 3455566677778888888999999999887 55666778899999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 163 (207)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+++..++...++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 3468999999999998888888888888888899999999999999999999
Q ss_pred HHHHHHcCC
Q 028546 164 RKIAAALPG 172 (207)
Q Consensus 164 ~~l~~~~~~ 172 (207)
++|.+.+..
T Consensus 161 ~~l~~~~~~ 169 (175)
T 2nzj_A 161 EGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 57
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.6e-32 Score=195.70 Aligned_cols=164 Identities=22% Similarity=0.403 Sum_probs=138.2
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (207)
||..++++||+++|++|+|||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+||+||+++ ..+++++
T Consensus 1 Sm~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~ 73 (178)
T 2iwr_A 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWA 73 (178)
T ss_dssp CCCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhC
Confidence 4667789999999999999999999999998876 55665533 356677888888999999999876 4577899
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHh-CCeEEEEecCCC
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTER---GGDVIIVLVGNKTDLV--DKRQVSIEEGDGKAKEF-GVMFIETSAKAG 156 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ 156 (207)
|++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+..+++..++..+ +++++++||++|
T Consensus 74 d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 74 DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG 153 (178)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence 99999999999999999999876665443 2578999999999984 45677788888888876 689999999999
Q ss_pred CChHHHHHHHHHHcCCC
Q 028546 157 FNIKPLFRKIAAALPGM 173 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~ 173 (207)
.|++++|++|.+.+...
T Consensus 154 ~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999987643
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=9.2e-33 Score=199.19 Aligned_cols=170 Identities=33% Similarity=0.565 Sum_probs=146.9
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (207)
+.+.++.+||+|+|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++++...+..++..+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 34456789999999999999999999999888776666665443 45567788888999999999999999999999999
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (207)
|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+++..++...++..++++++++|++++.|+++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 999999999999999999999998877654 4789999999999988778888888999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028546 162 LFRKIAAALPGM 173 (207)
Q Consensus 162 ~~~~l~~~~~~~ 173 (207)
+|++|.+.+.+.
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988643
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.2e-32 Score=194.88 Aligned_cols=164 Identities=34% Similarity=0.560 Sum_probs=145.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+++++|+++|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++.++|+++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 35799999999999999999999999887766666653 34666778888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++.......++..++++++++|+++|.|++++|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 99999999999999999988876543 57999999999999887888888888899999999999999999999999999
Q ss_pred HHHHcC
Q 028546 166 IAAALP 171 (207)
Q Consensus 166 l~~~~~ 171 (207)
|.+.+.
T Consensus 160 l~~~~~ 165 (167)
T 1kao_A 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 60
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=4.4e-32 Score=195.56 Aligned_cols=167 Identities=31% Similarity=0.497 Sum_probs=144.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
+++.++|+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++++...+..++.++|++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 4678999999999999999999999998877666666543 345667888889999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEE
Q 028546 86 VIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIET 151 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (207)
|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++..+++ +++++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999987 78888877654 6899999999998654 45677788888888887 99999
Q ss_pred ecCCCCChHHHHHHHHHHcCCCc
Q 028546 152 SAKAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~~~~~ 174 (207)
||++|.|++++|++|.+.+.+..
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cCCCccCHHHHHHHHHHHHhccc
Confidence 99999999999999999987543
No 61
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.8e-32 Score=202.76 Aligned_cols=173 Identities=29% Similarity=0.467 Sum_probs=148.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccccCCEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
...+||+|+|.+|+|||||+++|+++.+...+.++.+.......+...+ ..+.+.+||+||++.+...+..++.++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 4569999999999999999999999988877777777666666655543 347899999999999999999999999999
Q ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++.......++...+++++++||++|.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999998887777999999999999887788888888888888999999999999999999999
Q ss_pred HHHHcCCCccCccc
Q 028546 166 IAAALPGMETLSST 179 (207)
Q Consensus 166 l~~~~~~~~~~~~~ 179 (207)
|.+.+.+.......
T Consensus 169 l~~~~~~~~~~~~~ 182 (218)
T 4djt_A 169 LARIFTGRPDLIFV 182 (218)
T ss_dssp HHHHHHCCTTCCBC
T ss_pred HHHHHhcccccccc
Confidence 99999877655543
No 62
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2.5e-32 Score=193.51 Aligned_cols=162 Identities=31% Similarity=0.451 Sum_probs=122.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv 88 (207)
.+||+++|++|+|||||+++|.+..+... .++.+... ...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997766433 23333333 45667888889999999999999999999999999999999
Q ss_pred EECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 89 YDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
||++++.+++.+..|+..+.... ..++|+++|+||+|+.+++++..+....++..++++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999887653 35799999999999988888999999999999999999999999999999999999
Q ss_pred HHcCC
Q 028546 168 AALPG 172 (207)
Q Consensus 168 ~~~~~ 172 (207)
+.+.+
T Consensus 160 ~~~~~ 164 (166)
T 3q72_A 160 RQIRL 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98753
No 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=6e-32 Score=195.83 Aligned_cols=171 Identities=30% Similarity=0.507 Sum_probs=134.8
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (207)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (207)
...+.+++++|+++|.+|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++++...+..++..
T Consensus 14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (190)
T 3con_A 14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92 (190)
T ss_dssp -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred ccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence 34566788999999999999999999999988876666655533 34566778888899999999999999999999999
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
+|++++|||+++..++..+..|+..+..... .++|+++|+||+|+.+ +....++...++..++++++++|+++|.|++
T Consensus 93 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVE 171 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999999999988876543 4689999999999865 5667788888999999999999999999999
Q ss_pred HHHHHHHHHcCCCc
Q 028546 161 PLFRKIAAALPGME 174 (207)
Q Consensus 161 ~~~~~l~~~~~~~~ 174 (207)
++|++|.+.+.+.+
T Consensus 172 ~l~~~l~~~~~~~~ 185 (190)
T 3con_A 172 DAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886543
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.5e-32 Score=196.12 Aligned_cols=171 Identities=38% Similarity=0.601 Sum_probs=132.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhcccccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYI 79 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~ 79 (207)
|+. ...+.++|+++|++|+|||||+++|++..+...+.++.+.+.....+.++ +..+.+.+||+||++.+...+..++
T Consensus 1 Ms~-~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 79 (182)
T 1ky3_A 1 MSS-RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY 79 (182)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCS
T ss_pred CCc-ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHh
Confidence 433 34567999999999999999999999999887778888877777777776 5567999999999999999999999
Q ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCC-CCCCHHHHHHHHH-HhCCeEEEEec
Q 028546 80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDK-RQVSIEEGDGKAK-EFGVMFIETSA 153 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~s~ 153 (207)
+++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+. +.+..++...++. ..+++++++|+
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEec
Confidence 999999999999999999999999998877653 57899999999999543 4566777777777 45789999999
Q ss_pred CCCCChHHHHHHHHHHcCC
Q 028546 154 KAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~ 172 (207)
++|.|++++|++|.+.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 65
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=210.74 Aligned_cols=166 Identities=39% Similarity=0.701 Sum_probs=142.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..+||+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 111 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence 45999999999999999999999999988888888888888889999988999999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+.......++..++++++++|+++|.|++++|++|.
T Consensus 112 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999877667899999999999987777776677888888999999999999999999999999
Q ss_pred HHcCCC
Q 028546 168 AALPGM 173 (207)
Q Consensus 168 ~~~~~~ 173 (207)
+.+.+.
T Consensus 192 ~~l~~~ 197 (199)
T 3l0i_B 192 AEIKKR 197 (199)
T ss_dssp TTTTTT
T ss_pred HHHHHh
Confidence 887654
No 66
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=197.94 Aligned_cols=167 Identities=32% Similarity=0.469 Sum_probs=136.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
.....++|+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++++...+..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEE-EEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccce-eEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 34567999999999999999999999998876666666543 35567788888899999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEE
Q 028546 85 AVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIE 150 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 150 (207)
+|+|||++++.+++.+. .|+..+..... ++|+++|+||+|+.++ +.+..++...++..+++ ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999986 79888877654 6999999999998753 55677888888888887 9999
Q ss_pred EecCCCCChHHHHHHHHHHcCCC
Q 028546 151 TSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
+||++|.|++++|++|.+.+.+.
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999988644
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.7e-32 Score=192.09 Aligned_cols=165 Identities=28% Similarity=0.468 Sum_probs=143.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
++++|+++|++|+|||||+++|.++.+...+.++.+... ......++..+.+.+||+||++++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 469999999999999999999999988766666655433 3455677888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 165 (207)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++.......++..++++++++|+++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999999888876542 46899999999999887888888888888889999999999999999999999
Q ss_pred HHHHcCCC
Q 028546 166 IAAALPGM 173 (207)
Q Consensus 166 l~~~~~~~ 173 (207)
|.+.+...
T Consensus 161 l~~~~~~~ 168 (172)
T 2erx_A 161 LLNLEKRR 168 (172)
T ss_dssp HHHTCCSS
T ss_pred HHHHHhhh
Confidence 99987643
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=6.4e-33 Score=203.43 Aligned_cols=167 Identities=29% Similarity=0.472 Sum_probs=111.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCccccccceeeeEEEEEECCe--EEEEEEEecCChhhhccccccccccC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDTTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS 82 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (207)
...++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||++.+...+..++.++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35689999999999999999999998 777676777777777778888876 78999999999999999999999999
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHHHhCCeEEEEecCC-CC
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVD-KRQVSIEEGDGKAKEFGVMFIETSAKA-GF 157 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~ 157 (207)
|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ .+.+..+++..++..++++++++|+++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 5799999999999987 778888889999999999999999999 99
Q ss_pred ChHHHHHHHHHHcCCC
Q 028546 158 NIKPLFRKIAAALPGM 173 (207)
Q Consensus 158 ~i~~~~~~l~~~~~~~ 173 (207)
|++++|++|.+.+.+.
T Consensus 178 gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 178 DADAPFLSIATTFYRN 193 (208)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 69
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-32 Score=198.85 Aligned_cols=166 Identities=32% Similarity=0.455 Sum_probs=137.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hcccccccccc
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKF--DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRD 81 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~ 81 (207)
+....+||+|+|.+|+|||||+++|.+... ... .++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 445679999999999999999999996443 333 33455666677788899888999999999876 45566778889
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
+|++|+|||+++..+|+.+..|+..+.... ..++|++||+||+|+.+.+++..++...++..++++++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988876542 3469999999999998777888888888888899999999999999999
Q ss_pred HHHHHHHHHcC
Q 028546 161 PLFRKIAAALP 171 (207)
Q Consensus 161 ~~~~~l~~~~~ 171 (207)
++|++|.+.+.
T Consensus 192 elf~~l~~~i~ 202 (211)
T 2g3y_A 192 ELFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=3.6e-31 Score=186.99 Aligned_cols=163 Identities=29% Similarity=0.520 Sum_probs=142.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
++++|+++|++|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||++++...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 56899999999999999999999988876666655533 35566778888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +....+....++..++++++++|+++|.|+++++++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998877654 4689999999999866 5566778888888999999999999999999999999
Q ss_pred HHHcCC
Q 028546 167 AAALPG 172 (207)
Q Consensus 167 ~~~~~~ 172 (207)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 71
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.2e-31 Score=193.46 Aligned_cols=164 Identities=27% Similarity=0.494 Sum_probs=141.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
....+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999988777677766554 34566777788999999999999999999999999999
Q ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEE
Q 028546 86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFG-VMFIET 151 (207)
Q Consensus 86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 151 (207)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.++ +.+..++...++..++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 78888887654 36999999999999642 5577788888888887 699999
Q ss_pred ecC-CCCChHHHHHHHHHHcC
Q 028546 152 SAK-AGFNIKPLFRKIAAALP 171 (207)
Q Consensus 152 s~~-~~~~i~~~~~~l~~~~~ 171 (207)
||+ ++.|++++|++|.+.+.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHHHHh
Confidence 998 68999999999998865
No 72
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.5e-32 Score=197.51 Aligned_cols=167 Identities=34% Similarity=0.535 Sum_probs=126.9
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (207)
+|+..+.+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..+++++
T Consensus 2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (182)
T 3bwd_D 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA 80 (182)
T ss_dssp -----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTC
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCC
Confidence 466677899999999999999999999998887666665553332 2344566667889999999999999999999999
Q ss_pred CEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCC----------CCHHHHHHHHHHhCC-eEEE
Q 028546 83 SVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQ----------VSIEEGDGKAKEFGV-MFIE 150 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~ 150 (207)
|++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+. +..++...++..+++ ++++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999987 68888877654 699999999999866544 467778888888897 9999
Q ss_pred EecCCCCChHHHHHHHHHHcC
Q 028546 151 TSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~~~~ 171 (207)
+||++|.|++++|++|.+.+.
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998875
No 73
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-31 Score=195.95 Aligned_cols=164 Identities=27% Similarity=0.494 Sum_probs=141.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 35679999999999999999999999998877777776554 44566777788999999999999999999999999999
Q ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEE
Q 028546 86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFG-VMFIET 151 (207)
Q Consensus 86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 151 (207)
|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.++ +.+..+++..++..++ ++++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 788888876543 6999999999999642 4577788888888887 699999
Q ss_pred ecC-CCCChHHHHHHHHHHcC
Q 028546 152 SAK-AGFNIKPLFRKIAAALP 171 (207)
Q Consensus 152 s~~-~~~~i~~~~~~l~~~~~ 171 (207)
||+ ++.|++++|++|.+.+.
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHh
Confidence 999 68999999999998764
No 74
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=7.2e-32 Score=200.09 Aligned_cols=172 Identities=29% Similarity=0.538 Sum_probs=149.9
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (207)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (207)
........+||+++|.+|+|||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..++++
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34455677999999999999999999988887777777888888888888889999999999999999999999999999
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (207)
+|++|+|||++++.++..+..|+..+..... ++|+++|+||+|+.+..... ....++...+++++++|+++|.|+++
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999999987654 68999999999986544322 44556777899999999999999999
Q ss_pred HHHHHHHHcCCCccC
Q 028546 162 LFRKIAAALPGMETL 176 (207)
Q Consensus 162 ~~~~l~~~~~~~~~~ 176 (207)
+|++|.+.+......
T Consensus 165 l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 165 PFLWLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhCccc
Confidence 999999998766543
No 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=5.3e-31 Score=192.73 Aligned_cols=163 Identities=32% Similarity=0.522 Sum_probs=142.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
..++||+++|.+|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 34699999999999999999999999988777777766554 34677888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q 028546 87 IVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETS 152 (207)
Q Consensus 87 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 152 (207)
+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. +.+..++...++..+++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 678887776543 6899999999999765 45677788888888888 899999
Q ss_pred cCCCCChHHHHHHHHHHcC
Q 028546 153 AKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 153 ~~~~~~i~~~~~~l~~~~~ 171 (207)
|++|.|++++|++|.+.+.
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998764
No 76
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=197.34 Aligned_cols=166 Identities=31% Similarity=0.524 Sum_probs=123.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+++||+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 456999999999999999999999998876666666533 3556678888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEe
Q 028546 87 IVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFGV-MFIETS 152 (207)
Q Consensus 87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 152 (207)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.. .+..++...++..+++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 7888887654 368999999999997653 5677788888888898 999999
Q ss_pred cCCCCChHHHHHHHHHHcCCCc
Q 028546 153 AKAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 153 ~~~~~~i~~~~~~l~~~~~~~~ 174 (207)
|++|.|++++|++|.+.+.+.+
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999886443
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=6.8e-31 Score=193.00 Aligned_cols=164 Identities=30% Similarity=0.520 Sum_probs=137.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
+.++||+++|.+|+|||||+++|.++.+...+.++.+..+.. .+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 457899999999999999999999999877766766655443 3677888889999999999999999999999999999
Q ss_pred EEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q 028546 87 IVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETS 152 (207)
Q Consensus 87 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 152 (207)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++...++..+++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67888777654 36899999999999754 45677778888888888 899999
Q ss_pred cCCCCChHHHHHHHHHHcCC
Q 028546 153 AKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 153 ~~~~~~i~~~~~~l~~~~~~ 172 (207)
|++|.|++++|++|.+.+..
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=4.6e-31 Score=193.54 Aligned_cols=163 Identities=32% Similarity=0.518 Sum_probs=138.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
..+++||+++|.+|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+||+||++++...+..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35679999999999999999999999988766666664 45556677788888999999999999999999999999999
Q ss_pred EEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCC------------CCHHHHHHHHHHhCC-eEEEE
Q 028546 86 VIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQ------------VSIEEGDGKAKEFGV-MFIET 151 (207)
Q Consensus 86 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~ 151 (207)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+... +..++...++..+++ +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999986 7888887765 4699999999999876532 677788888888886 69999
Q ss_pred ecCCCCChHHHHHHHHHHc
Q 028546 152 SAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~ 170 (207)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998865
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=3.9e-30 Score=186.89 Aligned_cols=164 Identities=32% Similarity=0.497 Sum_probs=135.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC--CCCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hccccccccccCC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS 83 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 83 (207)
...+||+++|.+|+|||||+++|.+.. +... .++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999999643 3333 23455566677788899888999999999876 4556677888999
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHH
Q 028546 84 VAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 162 (207)
++++|||+++..+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988877653 346899999999999877778777777788888999999999999999999
Q ss_pred HHHHHHHcC
Q 028546 163 FRKIAAALP 171 (207)
Q Consensus 163 ~~~l~~~~~ 171 (207)
|++|.+.+.
T Consensus 163 f~~l~~~~~ 171 (192)
T 2cjw_A 163 FEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=4.4e-31 Score=192.47 Aligned_cols=166 Identities=18% Similarity=0.265 Sum_probs=128.1
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (207)
.+....++|+|+|.+|+|||||+++|.+..+.. .+.++.+... ..+...+ +.+.+|||||++++...+..+++++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcC
Confidence 345667999999999999999999999999877 6666666433 3343333 7899999999999999999999999
Q ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcC--------CCCeEEEEEeCCCCCCCCCCCHHHHHHH------HHHhCCeE
Q 028546 83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG--------GDVIIVLVGNKTDLVDKRQVSIEEGDGK------AKEFGVMF 148 (207)
Q Consensus 83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~ 148 (207)
|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+.+... ..+.... +...++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999999888765421 2689999999999976532 2222111 13356789
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546 149 IETSAKAGFNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~~~~~~~~ 175 (207)
+++||++|.|++++|++|.+.+.+...
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998875543
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=7.5e-32 Score=196.08 Aligned_cols=166 Identities=23% Similarity=0.261 Sum_probs=133.1
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------ccccceeeeEEEE-EECCeEEEEEEEecCChhhh
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-----------QATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~ 71 (207)
......+||+|+|++|+|||||++.+.+ .+...+ .++.+.++....+ .+++..+.+.+|||||++++
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3445679999999999999999965554 444332 2344444444334 55677789999999999999
Q ss_pred ccccccccccCCEEEEEEECC------ChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC
Q 028546 72 RSLIPSYIRDSSVAVIVYDVA------NRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG 145 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 145 (207)
...+..+++++|++|+|||++ +..++..+..|+..+. ....++|+++|+||+|+.+. ...+++..++..++
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG 164 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcC
Confidence 999999999999999999999 5677778888887773 23357999999999998654 67788888888899
Q ss_pred C-eEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546 146 V-MFIETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 146 ~-~~~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
+ +++++||++|.|++++|++|.+.+.+.
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999987643
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=8.1e-30 Score=186.13 Aligned_cols=165 Identities=35% Similarity=0.698 Sum_probs=146.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++..++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 35999999999999999999999999887777888888888888899988899999999999999888899999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|+|+++..+++.+..|+..+........|+++++||+|+.+.+......++.++...++.++++|++++.+++++|++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999998898888766555789999999999987777788888889999999999999999999999999999
Q ss_pred HHcCC
Q 028546 168 AALPG 172 (207)
Q Consensus 168 ~~~~~ 172 (207)
+.+.+
T Consensus 164 ~~~~~ 168 (199)
T 2f9l_A 164 TEIYR 168 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=183.66 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=129.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC-CCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
..+.++|+|+|.+|+|||||+++|.+.. +...+.++.+ .....+.+++ +.+.+||+||++++...+..++.++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3567999999999999999999999887 4555555554 4445555665 689999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCC
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAG 156 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~ 156 (207)
+|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+. ...++...... ..+++++++||++|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999999988876543 47899999999999653 33445544442 13568999999999
Q ss_pred CChHHHHHHHHHHcCCC
Q 028546 157 FNIKPLFRKIAAALPGM 173 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~ 173 (207)
.|++++|++|.+.+.+.
T Consensus 172 ~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp BTHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999988654
No 84
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=6.8e-29 Score=180.17 Aligned_cols=164 Identities=35% Similarity=0.707 Sum_probs=148.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
...++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 44589999999999999999999999988888888888888889999998888999999999999888998999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 166 (207)
+|+|.++..+++.+..|+..+........|+++++||+|+.+.+......++.++...++.++++|++++.+++++|++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998889888776555578999999999998777777888889999999999999999999999999999
Q ss_pred HHHc
Q 028546 167 AAAL 170 (207)
Q Consensus 167 ~~~~ 170 (207)
.+.+
T Consensus 187 ~~~i 190 (191)
T 1oix_A 187 LTEI 190 (191)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=6.1e-30 Score=181.93 Aligned_cols=159 Identities=22% Similarity=0.329 Sum_probs=126.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+++|++|+|||||+++|.++.+.. +.++.+ .....+.+++ +.+.+||+||++++...+..+++++|++|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 346999999999999999999999888753 344444 3344555564 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHH-----HHHhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGK-----AKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~ 160 (207)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... ..+.... +...+++++++|+++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999888888776543 24799999999999965532 2222222 11235689999999999999
Q ss_pred HHHHHHHHHcCC
Q 028546 161 PLFRKIAAALPG 172 (207)
Q Consensus 161 ~~~~~l~~~~~~ 172 (207)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=182.95 Aligned_cols=164 Identities=19% Similarity=0.264 Sum_probs=125.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+ .....+.+++ +.+.+||+||++++...+..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988876 4444444 3334555565 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (207)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998887642 246999999999999653 23344433322 235689999999999999
Q ss_pred HHHHHHHHHcCCCccCc
Q 028546 161 PLFRKIAAALPGMETLS 177 (207)
Q Consensus 161 ~~~~~l~~~~~~~~~~~ 177 (207)
++|++|.+.+.......
T Consensus 167 ~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp HHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999987665443
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=4.9e-29 Score=179.86 Aligned_cols=160 Identities=23% Similarity=0.324 Sum_probs=128.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+++|++|+|||||++++.++. ...+.++.+. ....+.+++ +.+.+|||||++++...+..+++++|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888 5555565553 344555554 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (207)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++.. .++...... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999999988876542 24699999999999965432 333322221 235689999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028546 161 PLFRKIAAALPGM 173 (207)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (207)
++|++|.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.1e-30 Score=188.27 Aligned_cols=161 Identities=20% Similarity=0.330 Sum_probs=122.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
...+.++|+|+|++|+|||||+++|.++.+.. +.++.+ .....+...+ +.+.+||+||++++...+..++.++|+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQG 99 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 34678999999999999999999999888753 344444 3344455555 689999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCC
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFN 158 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~ 158 (207)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++...... ..+++++++||++|.|
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 999999999999999999988876532 24699999999999865422 222222111 1245799999999999
Q ss_pred hHHHHHHHHHHcCC
Q 028546 159 IKPLFRKIAAALPG 172 (207)
Q Consensus 159 i~~~~~~l~~~~~~ 172 (207)
++++|++|.+.+.+
T Consensus 178 i~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 178 LYDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 89
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=3.4e-30 Score=186.48 Aligned_cols=161 Identities=22% Similarity=0.319 Sum_probs=128.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.+||+|+|++|+|||||+++|.++.+...+.++.+.++. .+...+ +.+.+||+||++++...+..++.++|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 45699999999999999999999999887666676665543 333443 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (207)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999999988876542 2579999999999996542 2222222211 124579999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028546 161 PLFRKIAAALPGM 173 (207)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (207)
++|++|.+.+.+.
T Consensus 174 ~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 174 ITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.5e-29 Score=184.65 Aligned_cols=157 Identities=21% Similarity=0.256 Sum_probs=121.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+++|++|+|||||+++|.++.+.. +.++.+. ....+.+++ +.+.+|||||++.++..+..+++++|++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHP--TSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCC--SCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCc--eeEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 457899999999999999999999887743 3344333 235566676 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------hCCeE
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----------------FGVMF 148 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 148 (207)
+|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+ .+..+++...+.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999998886542 34799999999999865 4556666655542 23579
Q ss_pred EEEecCCCCChHHHHHHHHHHc
Q 028546 149 IETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
++|||++|.|++++|++|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998754
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.8e-30 Score=183.51 Aligned_cols=156 Identities=21% Similarity=0.344 Sum_probs=122.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~ 89 (207)
+||+++|++|+|||||+++|.++.+.. +.++.+ .....+...+ +.+.+||+||++++...+..++.++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 344444 3334444443 68999999999999999999999999999999
Q ss_pred ECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChHHHH
Q 028546 90 DVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~ 163 (207)
|++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999999888887653 23468999999999996542 2222222111 124579999999999999999
Q ss_pred HHHHHHcCC
Q 028546 164 RKIAAALPG 172 (207)
Q Consensus 164 ~~l~~~~~~ 172 (207)
++|.+.+..
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999998764
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=2.9e-29 Score=182.00 Aligned_cols=156 Identities=22% Similarity=0.245 Sum_probs=126.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.++++|+++|++|+|||||++++.++.+.. +.++.+. ....+.+++ +.+.+||+||++++...+..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 456899999999999999999999988753 3344443 345666776 78999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEec
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE------------FGVMFIETSA 153 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~ 153 (207)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++....... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999998886542 25799999999999865 4455555544332 3457999999
Q ss_pred CCCCChHHHHHHHHHH
Q 028546 154 KAGFNIKPLFRKIAAA 169 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~ 169 (207)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999864
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=2.1e-29 Score=181.24 Aligned_cols=158 Identities=19% Similarity=0.305 Sum_probs=123.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (207)
...+.++|+++|.+|+|||||+++|.++.+ ....++.+.. ...+.+++ +.+.+||+||++++...+..+++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 445679999999999999999999999887 3334444433 34455555 689999999999999999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCC
Q 028546 85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFN 158 (207)
Q Consensus 85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~ 158 (207)
+|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999999888876542 347999999999998653 23333333321 2345899999999999
Q ss_pred hHHHHHHHHHH
Q 028546 159 IKPLFRKIAAA 169 (207)
Q Consensus 159 i~~~~~~l~~~ 169 (207)
++++|++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=7.5e-29 Score=178.43 Aligned_cols=160 Identities=21% Similarity=0.327 Sum_probs=124.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+. ....+.+++ +.+.+||+||++.+...+..++.++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999988653 23444443 334455554 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (207)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++...... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888877543 225789999999999965433 222222211 124579999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028546 161 PLFRKIAAALPGM 173 (207)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (207)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987643
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=6.1e-30 Score=184.58 Aligned_cols=166 Identities=22% Similarity=0.378 Sum_probs=122.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC--CCCCccccccceeeeEEEEEE---CCeEEEEEEEecCChhhhccccccccccCC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD--KFDTTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (207)
++||+++|++|+|||||+++|.+. .+...+.++.+.++....+.+ ++..+.+.+||++|++++...+..++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 455555677777766655543 234578999999999999999999999999
Q ss_pred EEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC---HHHHHHHHHHhCCe----EEEEecCC
Q 028546 84 VAVIVYDVANR-QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS---IEEGDGKAKEFGVM----FIETSAKA 155 (207)
Q Consensus 84 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~ 155 (207)
++++|||++++ .+++.+..|+..+..... +.|+++|+||+|+.+.+.+. ......++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 579999999998876543 68999999999986543322 12233444455675 99999999
Q ss_pred CC-ChHHHHHHHHHHcCCCcc
Q 028546 156 GF-NIKPLFRKIAAALPGMET 175 (207)
Q Consensus 156 ~~-~i~~~~~~l~~~~~~~~~ 175 (207)
+. +++++++.|.+.+.....
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC--
T ss_pred CchhHHHHHHHHHHHHhcccc
Confidence 97 999999999998876543
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=9.8e-30 Score=184.05 Aligned_cols=159 Identities=21% Similarity=0.298 Sum_probs=126.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.++++|+++|++|+|||||+++|.++.+.. +.++.+ .....+..++ +.+.+|||||++++...+..+++++|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999999887753 344444 3344455554 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~ 160 (207)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988888776543 25799999999999965432 22222211 1234579999999999999
Q ss_pred HHHHHHHHHcCC
Q 028546 161 PLFRKIAAALPG 172 (207)
Q Consensus 161 ~~~~~l~~~~~~ 172 (207)
+++++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (189)
T 2x77_A 173 EGMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=4.5e-28 Score=189.71 Aligned_cols=162 Identities=31% Similarity=0.511 Sum_probs=141.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
..++|+++|.+|+|||||++++.++.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999988766666665 3445667788888899999999999999999999999999999
Q ss_pred EEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q 028546 88 VYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETSA 153 (207)
Q Consensus 88 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~ 153 (207)
|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+. +.+...+...++..+++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999986 78888876654 7999999999998653 56778888889999997 9999999
Q ss_pred CCCCChHHHHHHHHHHcC
Q 028546 154 KAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~ 171 (207)
++|.|++++|++|.+.+.
T Consensus 312 ~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999998765
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=5e-29 Score=181.53 Aligned_cols=163 Identities=19% Similarity=0.242 Sum_probs=120.8
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEE--EEC-CeEEEEEEEecCChhhhcccc---c
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTM--YLE-DRTVRLQLWDTAGQERFRSLI---P 76 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~i~D~~G~~~~~~~~---~ 76 (207)
+.+..+++||+++|.+|+|||||++++.+. +... ++.+.+...... .+. +..+.+.+||+||+++|.... .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 345567799999999999999999987764 3322 233333332222 232 455789999999999987776 7
Q ss_pred cccccCCEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-------CCCCHHHHHHHHH----H
Q 028546 77 SYIRDSSVAVIVYDVANR--QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK-------RQVSIEEGDGKAK----E 143 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~----~ 143 (207)
.+++++|++|+|||++++ +++..+..|+..+.... .++|+++|+||+|+.++ +++.......++. .
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 899999999999999987 67777777877775433 47999999999998652 3344455566666 5
Q ss_pred hCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546 144 FGVMFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 144 ~~~~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
+++.++++||++ .|++++|+.|++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 678999999999 99999999999865
No 99
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.3e-28 Score=174.67 Aligned_cols=155 Identities=18% Similarity=0.263 Sum_probs=118.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc------ccccccc-
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYIR- 80 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 80 (207)
++++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+.++.. ....++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 568999999999999999999999877655556666666666666666 5899999999887642 2345554
Q ss_pred -cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546 81 -DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159 (207)
Q Consensus 81 -~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (207)
++|++++|+|+++.+ ....|+..+... +.|+++|+||+|+.+.+.+.. +...++..++++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALE---RNLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHH---HHHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchh---HhHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 899999999999754 344566666542 589999999999865444432 356677788999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028546 160 KPLFRKIAAALP 171 (207)
Q Consensus 160 ~~~~~~l~~~~~ 171 (207)
+++|++|.+.+.
T Consensus 153 ~~l~~~l~~~~~ 164 (165)
T 2wji_A 153 EELKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.8e-31 Score=194.54 Aligned_cols=162 Identities=32% Similarity=0.521 Sum_probs=134.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.+||+++|.+|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 567999999999999999999999988876655555433 3445566777788999999999999999999999999999
Q ss_pred EEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEe
Q 028546 87 IVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFGV-MFIETS 152 (207)
Q Consensus 87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 152 (207)
+|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+.. .+..++...++..+++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999986 78877766544 68999999999997543 4445566677777787 899999
Q ss_pred cCCCCChHHHHHHHHHHc
Q 028546 153 AKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 153 ~~~~~~i~~~~~~l~~~~ 170 (207)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998764
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=3.6e-28 Score=174.72 Aligned_cols=158 Identities=22% Similarity=0.332 Sum_probs=122.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.++++|+++|++|+|||||++++.++.+ ..+.++.+. ....+.+++ +.+.+||+||++++...+..++.++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998877 344455543 334455555 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----FGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 160 (207)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++ ...++....... .+++++++|+++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999888876543 357999999999998654 223333332221 23479999999999999
Q ss_pred HHHHHHHHHcC
Q 028546 161 PLFRKIAAALP 171 (207)
Q Consensus 161 ~~~~~l~~~~~ 171 (207)
+++++|.+.+.
T Consensus 169 ~l~~~l~~~~~ 179 (183)
T 1moz_A 169 EGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1e-27 Score=171.56 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=121.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (207)
..+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++ ..+.+|||||++++...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 35679999999999999999999999988777667666666666677777 4678999999999999999999999999
Q ss_pred EEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-------C--CeEEEEec
Q 028546 86 VIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-------G--VMFIETSA 153 (207)
Q Consensus 86 ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~ 153 (207)
|+|+|+++ ..+++.+ ..+ ...++|+++|+||+|+.+. ..+......... + ++++++||
T Consensus 83 i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 99999987 3333332 222 2236899999999998653 222222222222 2 58999999
Q ss_pred CCCCChHHHHHHHHHHcCCCc
Q 028546 154 KAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~~~ 174 (207)
++|.|++++|++|.+.+...+
T Consensus 153 ~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhhhhhc
Confidence 999999999999999876443
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=2.3e-27 Score=176.71 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=118.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh---------cccccc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPS 77 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~ 77 (207)
...++|+|+|.+|+|||||+++|++..+.....+..+.+.....+...+ ..+.+|||||.... ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4579999999999999999999999887544344444455555555555 68999999998321 112234
Q ss_pred ccccCCEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH---HHHHHHHHhC--CeEEE
Q 028546 78 YIRDSSVAVIVYDVANRQSFL--NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE---EGDGKAKEFG--VMFIE 150 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 150 (207)
++..+|++|+|||++++.++. ....|+..+.... .+.|+++|+||+|+.+.+++... ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 567889999999999877664 2345555554432 36899999999999877766554 3455566666 79999
Q ss_pred EecCCCCChHHHHHHHHHHcCCCc
Q 028546 151 TSAKAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~~~~~~~ 174 (207)
+||++|.|++++|++|.+.+...+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999886443
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.5e-29 Score=187.38 Aligned_cols=165 Identities=17% Similarity=0.239 Sum_probs=123.0
Q ss_pred CCCCceeEEEEcCC---------CCCHHHHHHHHhc---CCCCCcccccc-ceeeeEEEE--------------EECCeE
Q 028546 5 SPLAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDTTYQATI-GIDFLSKTM--------------YLEDRT 57 (207)
Q Consensus 5 ~~~~~~~i~v~G~~---------~sGKStli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~ 57 (207)
.....+||+|+|.+ |+|||||+++|++ ..+...+.++. +.++....+ .+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 45667999999999 9999999999998 55655555544 333222211 245667
Q ss_pred EEEEEEe-----------------------cCChhhhccccccccc---------------------cCCEEEEEEECCC
Q 028546 58 VRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVIVYDVAN 93 (207)
Q Consensus 58 ~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~~~ 93 (207)
+.+.+|| ++|++++...+..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8999999 6667777777777776 7999999999999
Q ss_pred h--HHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 94 R--QSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-FGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 94 ~--~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
+ .+++.+..|+..+... ...++|+++|+||+|+.+.+.+ ++...++.. .+++++++||++|.|++++|++|.+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8 8999999999988765 3346999999999998655443 455666665 47899999999999999999999987
Q ss_pred cC
Q 028546 170 LP 171 (207)
Q Consensus 170 ~~ 171 (207)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=4.5e-27 Score=173.27 Aligned_cols=161 Identities=20% Similarity=0.300 Sum_probs=113.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe-EEEEEEEecCChhhhcc-ccccccccCCE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSSV 84 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 84 (207)
.+.++|+++|++|+|||||+++|+++.+...+.+ .+.+... +.+++. .+.+.+|||||++++.. ++..+++++|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 4569999999999999999999999988766543 3333332 555543 47899999999999988 78888999999
Q ss_pred EEEEEECCChH-HHHHHHHHHHH-HHHh--cCCCCeEEEEEeCCCCCCCCCCCH--HHHHHHHH----------------
Q 028546 85 AVIVYDVANRQ-SFLNTSRWIEE-VRTE--RGGDVIIVLVGNKTDLVDKRQVSI--EEGDGKAK---------------- 142 (207)
Q Consensus 85 ~ilv~d~~~~~-s~~~~~~~~~~-i~~~--~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~---------------- 142 (207)
+|+|||+++.. ++.....++.. +... ...++|+++|+||+|+.+...... +.+.....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999853 45555444443 3332 234689999999999975543211 11111111
Q ss_pred -----------------Hh--CCeEEEEecCCC------CChHHHHHHHHHHc
Q 028546 143 -----------------EF--GVMFIETSAKAG------FNIKPLFRKIAAAL 170 (207)
Q Consensus 143 -----------------~~--~~~~~~~s~~~~------~~i~~~~~~l~~~~ 170 (207)
.+ ++++++|||++| .|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 567999999999 99999999998764
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=3.3e-27 Score=183.09 Aligned_cols=163 Identities=22% Similarity=0.324 Sum_probs=128.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhh-----cccccccccc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYIRD 81 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~ 81 (207)
..+||+++|++|+|||||+++|+++... ....+..+++.....+.+++ .+.+.+||+||++++ ...+..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 5799999999999999999999987433 22234444454555555544 479999999999988 6788888999
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCCC--CCC----CCHHHHHHHHHHhC---CeEEE
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTER--GGDVIIVLVGNKTDLVD--KRQ----VSIEEGDGKAKEFG---VMFIE 150 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~~~ 150 (207)
+|++|+|||++++.+++.+..|...+.... ..++|+++|+||+|+.+ .+. ...+++..++..++ +++++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999999999999999999877765544322 34699999999999976 333 44567777888886 79999
Q ss_pred EecCCCCChHHHHHHHHHHcCC
Q 028546 151 TSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 151 ~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
+|+++ .++.++|..+++.+..
T Consensus 161 tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTTCS
T ss_pred eeecC-ChHHHHHHHHHHHHcC
Confidence 99999 7999999998886643
No 107
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.2e-27 Score=171.36 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=127.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc------cccccc
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSY 78 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~ 78 (207)
+.++.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||+..+. .....+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 345789999999999999999999999876655566667777777777766 689999999988764 234555
Q ss_pred cc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546 79 IR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG 156 (207)
Q Consensus 79 ~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (207)
+. .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.+...+. .....++..++++++++|++++
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKK 153 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGT
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCC
Confidence 54 4999999999975 4556667776654 368999999999986554443 3456677788999999999999
Q ss_pred CChHHHHHHHHHHcCCCc
Q 028546 157 FNIKPLFRKIAAALPGME 174 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~ 174 (207)
.|++++|++|.+.+.+..
T Consensus 154 ~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 154 MGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BSHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999987654
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=185.97 Aligned_cols=160 Identities=21% Similarity=0.319 Sum_probs=120.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.++|+|+|.+|+|||||+++|.+..+... .++.+. ....+...+ +.+.||||||++.+...+..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTE--EEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccce--EEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999887543 244433 334444454 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----FGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 160 (207)
+|||++++.++..+..|+..+.... ..++|++||+||+|+.+... .+.+...... .+++++++||++|.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 9999999999999888887765443 25799999999999965443 2222222211 24579999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028546 161 PLFRKIAAALPGM 173 (207)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (207)
++|++|.+.+.+.
T Consensus 316 el~~~l~~~l~~~ 328 (329)
T 3o47_A 316 EGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=2.2e-27 Score=172.30 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=111.0
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhhhc
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR 72 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~ 72 (207)
.++....++|+|+|++|+|||||+++|++..+.....++.+..........++ .+.+||||| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence 34555679999999999999999999999876544444444333333344444 689999999 77777
Q ss_pred cccccccccC---CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--HHHHH-HHHHhCC
Q 028546 73 SLIPSYIRDS---SVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--EEGDG-KAKEFGV 146 (207)
Q Consensus 73 ~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~ 146 (207)
..+..++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+..++.. +.... +....++
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 7788887777 9999999999866655532 2222222 3689999999999976554322 22222 2222357
Q ss_pred eEEEEecCCCCChHHHHHHHHHHcC
Q 028546 147 MFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
+++++|+++|.|++++|++|.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999998775
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=3.6e-26 Score=188.21 Aligned_cols=166 Identities=21% Similarity=0.320 Sum_probs=125.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
.+.+||+++|.+++|||||+++|++..+.. ..++.+. ....+...+ +.+.+|||||++.+...+..+++++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGF--NVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccce--eEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999988653 3444443 334444444 68999999999999999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546 87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 160 (207)
+|||++++.++..+..|+..+..... .++|++||+||+|+.+.. ...+...... ..+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999988888765432 579999999999986533 2222222211 123469999999999999
Q ss_pred HHHHHHHHHcCCCccCccc
Q 028546 161 PLFRKIAAALPGMETLSST 179 (207)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~ 179 (207)
++|++|.+.+.......++
T Consensus 473 ~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp HHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 9999999998766655443
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=3.2e-26 Score=177.58 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=132.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhc---------
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFR--------- 72 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~--------- 72 (207)
.++++.-.|+++|.+|+|||||+|+|++..+.. ...+.++.+......... + .++.||||||..++.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHH
Confidence 455667899999999999999999999998753 334455555555555555 4 689999999985543
Q ss_pred -cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEE
Q 028546 73 -SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFI 149 (207)
Q Consensus 73 -~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~ 149 (207)
.....++..+|++++|+|++++.+......|+..+... +.|+++|+||+|+.+..+........+...++ .+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 45567788999999999999887777777667776653 68999999999997455555666666777765 6899
Q ss_pred EEecCCCCChHHHHHHHHHHcCCCccCcc
Q 028546 150 ETSAKAGFNIKPLFRKIAAALPGMETLSS 178 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~~~~~~~ 178 (207)
++||++|.|+++++++|.+.+.+.....+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~~ 188 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGEPLFP 188 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCCCSSC
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCCCCCC
Confidence 99999999999999999999987655443
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.5e-26 Score=175.17 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=124.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc------cccc-
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI------PSYI- 79 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~- 79 (207)
.+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+...+ ..+.+||+||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4579999999999999999999999887656667777766666666655 689999999988766532 4454
Q ss_pred -ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546 80 -RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN 158 (207)
Q Consensus 80 -~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (207)
..+|++|+|+|+++.++.. .|+..+... ++|+++|+||+|+.+.+.+.. ....++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM---EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT---TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc---CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999865433 355555443 689999999999876555443 35677888899999999999999
Q ss_pred hHHHHHHHHHHcC
Q 028546 159 IKPLFRKIAAALP 171 (207)
Q Consensus 159 i~~~~~~l~~~~~ 171 (207)
++++|++|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=5.1e-27 Score=169.57 Aligned_cols=157 Identities=24% Similarity=0.310 Sum_probs=116.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC-----------hhhhccccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY 78 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 78 (207)
+||+++|++|+|||||+++|.+..+...+.++.+..... +... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999998877666665544332 2233 689999999 66777777777
Q ss_pred ccc-CCEEEEEEECCChHHHHHH-HHHHHH---------HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe
Q 028546 79 IRD-SSVAVIVYDVANRQSFLNT-SRWIEE---------VRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM 147 (207)
Q Consensus 79 ~~~-~d~~ilv~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (207)
+++ ++++++++++.+..++..+ ..|... +......++|+++|+||+|+.+.. .+....++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 6666666666655666665 455432 122222468999999999986654 45567777777764
Q ss_pred -------EEEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546 148 -------FIETSAKAGFNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 148 -------~~~~s~~~~~~i~~~~~~l~~~~~~~~~ 175 (207)
++++||++|.|++++|++|.+.+.+.++
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998865443
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=7.2e-27 Score=166.75 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=116.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------cccc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (207)
+.++|+++|++|+|||||+++|.+..+. ....++.+.+.....+.+++. .+.+|||||+.++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987653 233455566666777777773 5899999997643221 1235
Q ss_pred cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546 79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN 158 (207)
Q Consensus 79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (207)
++++|++++|+|++++.+++ ...|+..+......++|+++|+||+|+.++... ++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeCCCCCC
Confidence 78999999999999877765 356777777665557999999999998543110 1112467899999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 028546 159 IKPLFRKIAAALPGM 173 (207)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (207)
++++|++|.+.+...
T Consensus 153 v~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 153 VDVLRNHLKQSMGFD 167 (172)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999987543
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=2e-26 Score=162.15 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=106.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh-------hcccccccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD 81 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 81 (207)
.||+++|++|+|||||+++|.+..+. ....++.+.+.....+..++. .+.+||+||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988754 233455555666666667764 789999999876 34455667899
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChH
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIK 160 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 160 (207)
+|++|+|+|++++.+... .++..+... .+.|+++|+||+|+.+..+ ....++ .+++ +++++|+++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~----~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHEL----YLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGG----GCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchH----hHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999997433222 222222222 2589999999999965532 223333 5677 89999999999999
Q ss_pred HHHHHHHHHc
Q 028546 161 PLFRKIAAAL 170 (207)
Q Consensus 161 ~~~~~l~~~~ 170 (207)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999876
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=7.4e-27 Score=193.71 Aligned_cols=167 Identities=21% Similarity=0.354 Sum_probs=127.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEE------EEE--CCeEEEEEEEecCChhhhccccc
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKT------MYL--EDRTVRLQLWDTAGQERFRSLIP 76 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~ 76 (207)
....++||+++|.+|+|||||+++|.+..+...+.++.+.++.... +.+ ++..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4577899999999999999999999999987777777776665442 111 23346899999999999999999
Q ss_pred cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG 156 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 156 (207)
.+++++|++|+|+|+++. +.+..|+..+..... +.|+++|+||+|+.+.+++..+.....+...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999864 556778888877654 6899999999999888888888888888888999999999999
Q ss_pred CChHHHHHHHHHHcCCCcc
Q 028546 157 FNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~ 175 (207)
.|+++++++|.+.+.....
T Consensus 193 ~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp --CTTHHHHHHHHHTCTTS
T ss_pred cCHHHHHHHHHHHHhcccc
Confidence 9999999999999886544
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=9.7e-26 Score=163.41 Aligned_cols=161 Identities=20% Similarity=0.324 Sum_probs=113.9
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhhh
Q 028546 2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERF 71 (207)
Q Consensus 2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~ 71 (207)
...+....++|+++|++|+|||||+++|++..+... .++.+..........+. .+.+||||| ++.+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence 455566779999999999999999999998874322 23333333233333333 578999999 6667
Q ss_pred ccccccccccC---CEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHh
Q 028546 72 RSLIPSYIRDS---SVAVIVYDVANRQS--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--VSIEEGDGKAKEF 144 (207)
Q Consensus 72 ~~~~~~~~~~~---d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~ 144 (207)
...+..++..+ |++++|+|+++..+ ...+..|+... +.|+++|+||+|+.++.+ ...+.....+...
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 77777777766 99999999986432 23333444332 589999999999875433 2233444444443
Q ss_pred C-CeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 145 G-VMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 145 ~-~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
+ ++++++||++|.|++++|++|.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3 689999999999999999999998764
No 118
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=9.4e-27 Score=177.82 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=122.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc----------cc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IP 76 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~ 76 (207)
|++++|+++|.+|+|||||+|+|++..+.....++.+.+.....+...+ ..+.+|||||...+... ..
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence 3579999999999999999999999887666677777777777777766 47889999998776631 22
Q ss_pred cc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q 028546 77 SY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK 154 (207)
Q Consensus 77 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 154 (207)
.+ ...+|++|+|+|+++.+....+..++. .. ++|+++|+||+|+.+...... ....+...++++++++||+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~---~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYLTLQLL---EL---GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH---TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCG
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHHHHHHH---hc---CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcC
Confidence 22 268999999999998655544444333 33 589999999999865444322 2456677789999999999
Q ss_pred CCCChHHHHHHHHHHcCCC
Q 028546 155 AGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 155 ~~~~i~~~~~~l~~~~~~~ 173 (207)
+|.|+++++++|.+.+...
T Consensus 152 ~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999887644
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2.6e-26 Score=173.58 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=120.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc----------cccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI 79 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 79 (207)
.+|+++|.+|+|||||+|+|.+........++.+.+.....+..++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999999876667788888888888888774 899999999877653 344556
Q ss_pred --ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q 028546 80 --RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF 157 (207)
Q Consensus 80 --~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 157 (207)
.++|++|+|+|+++.++...+..++.. .+.|+++|+||+|+.+.+.... ....+...++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~------~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFE------LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTT------SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHH------cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 889999999999986655544433322 2689999999999865544332 2345677789999999999999
Q ss_pred ChHHHHHHHHHH
Q 028546 158 NIKPLFRKIAAA 169 (207)
Q Consensus 158 ~i~~~~~~l~~~ 169 (207)
|+++++++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999887
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=1.1e-25 Score=171.65 Aligned_cols=160 Identities=23% Similarity=0.249 Sum_probs=125.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc------cccccc-
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI- 79 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~- 79 (207)
++.++|+++|++|+|||||+++|.+..+.....++.+.+.....+...+. .+.+||+||...+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 35689999999999999999999999886667778888887777777774 699999999887665 344454
Q ss_pred -ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546 80 -RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN 158 (207)
Q Consensus 80 -~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 158 (207)
.++|++|+|+|+++.. ....|...+.... ..|+++|+||+|+.+....... ...+...++++++++|+++|.|
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBT
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCC
Confidence 6899999999999753 3333444444331 2899999999998654444332 5667778899999999999999
Q ss_pred hHHHHHHHHHHcCCCc
Q 028546 159 IKPLFRKIAAALPGME 174 (207)
Q Consensus 159 i~~~~~~l~~~~~~~~ 174 (207)
++++++++.+.+....
T Consensus 153 i~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 153 VEELKRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999876443
No 121
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=2e-26 Score=177.81 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=116.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC---ccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---ccccccccCCE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDT---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV 84 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 84 (207)
||+++|+.|+|||||++++.++.++. ...++.+.+... + + ..+++.+|||+|+++|+. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887664432 134555554432 2 2 237899999999999975 35889999999
Q ss_pred EEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----hCCeEEEE
Q 028546 85 AVIVYDVANR--QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK-------RQVSIEEGDGKAKE----FGVMFIET 151 (207)
Q Consensus 85 ~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 151 (207)
+|+|||+++. +.+..+..|+..+... .+++|+++++||+|+.++ +++..++.+.+++. +++.++++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 3334444445555443 347999999999999754 23445555566664 57899999
Q ss_pred ecCCCCChHHHHHHHHHHcCCC
Q 028546 152 SAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
||++ .++.++|..+++.+...
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTT
T ss_pred ccCC-CcHHHHHHHHHHHHHhh
Confidence 9998 58999999999877644
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=4.2e-26 Score=173.67 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=117.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc------cccccccc--
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR-- 80 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 80 (207)
.++|+++|++|+|||||+++|.+........++.+.+..... +.. ...+.+||+||+..+. .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 589999999999999999999988755454555554443333 343 4689999999988765 33455554
Q ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
++|++|+|+|+++.++. ..|...+... ++|+++++||+|+.+.+.+. .....++..++++++++||++|.|++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIET---GIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHHT---CSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHhc---CCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 69999999999975543 3455555442 68999999999986554443 34566777889999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028546 161 PLFRKIAAALPG 172 (207)
Q Consensus 161 ~~~~~l~~~~~~ 172 (207)
++|++|.+.+..
T Consensus 153 el~~~i~~~~~~ 164 (272)
T 3b1v_A 153 QVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHSCTT
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=9.6e-26 Score=167.09 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=111.6
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhh
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKF--DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QER 70 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~ 70 (207)
+.+....++|+|+|.+|+|||||+++|++... .....+..+.+........ .....+.+||||| ++.
T Consensus 23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHH
Confidence 44556679999999999999999999999873 2223333333333222221 2235799999999 344
Q ss_pred hcccccccccc---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHH--
Q 028546 71 FRSLIPSYIRD---SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKE-- 143 (207)
Q Consensus 71 ~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~-- 143 (207)
+...+..++.. +|++|+|+|++++.+ .....++..+.. ..+|+++|+||+|+.+..+.. .+........
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 55566666665 788999999986433 122334444433 368999999999987544321 1222222232
Q ss_pred -----hCCeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546 144 -----FGVMFIETSAKAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 144 -----~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~ 174 (207)
.+.+++++||++|.|++++|++|.+.+....
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4568999999999999999999999987543
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=9.2e-25 Score=168.64 Aligned_cols=166 Identities=18% Similarity=0.165 Sum_probs=115.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhh--------h
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------F 71 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~ 71 (207)
|+.. .+..+|+++|.+|+|||||+|+|++..+.. ...+.++.+.........+ .++.||||||..+ +
T Consensus 1 m~~~--~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~ 76 (301)
T 1wf3_A 1 MAEK--TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFM 76 (301)
T ss_dssp --CC--CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHH
T ss_pred CCCC--ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHH
Confidence 4443 556889999999999999999999988753 3334444443333444444 6899999999776 3
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeE
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWI-EEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF--GVMF 148 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~ 148 (207)
......+++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+.+.... .......+ ..++
T Consensus 77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~ 149 (301)
T 1wf3_A 77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEP 149 (301)
T ss_dssp HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEE
T ss_pred HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcE
Confidence 445566789999999999998754333 3444 3343322 36899999999998654320 22223332 3479
Q ss_pred EEEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546 149 IETSAKAGFNIKPLFRKIAAALPGMETLS 177 (207)
Q Consensus 149 ~~~s~~~~~~i~~~~~~l~~~~~~~~~~~ 177 (207)
+++||++|.|+++++++|.+.+.+....+
T Consensus 150 ~~iSA~~g~gv~~l~~~l~~~l~~~~~~y 178 (301)
T 1wf3_A 150 RMLSALDERQVAELKADLLALMPEGPFFY 178 (301)
T ss_dssp EECCTTCHHHHHHHHHHHHTTCCBCCCSS
T ss_pred EEEeCCCCCCHHHHHHHHHHhcccCCCCC
Confidence 99999999999999999999886554433
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=9.4e-26 Score=166.64 Aligned_cols=149 Identities=18% Similarity=0.239 Sum_probs=106.2
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---cccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccc
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 77 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 77 (207)
|........++|+++|++|+|||||+++|.+..+... +.++.+.++ ....+.+||+||++.+...+..
T Consensus 4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~ 74 (218)
T 1nrj_B 4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD 74 (218)
T ss_dssp ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence 3344455679999999999999999999999887542 233332221 3357999999999999888888
Q ss_pred cccc----CCEEEEEEECC-ChHHHHHHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCCCCCC------HHHHHHHHH
Q 028546 78 YIRD----SSVAVIVYDVA-NRQSFLNTSRWIEEVRTE----RGGDVIIVLVGNKTDLVDKRQVS------IEEGDGKAK 142 (207)
Q Consensus 78 ~~~~----~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~ 142 (207)
++.. +|++|+|+|++ ++.++..+..|+..+... ...++|+++|+||+|+.+...+. ..+...++.
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 154 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE 154 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH
Confidence 8877 89999999999 888888888888877654 34579999999999997765543 344555666
Q ss_pred HhCCeEEEEecCCCCC
Q 028546 143 EFGVMFIETSAKAGFN 158 (207)
Q Consensus 143 ~~~~~~~~~s~~~~~~ 158 (207)
..++.++++|+++|.+
T Consensus 155 ~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 155 RRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHC--------
T ss_pred HHhccccccccccccc
Confidence 6677899999999875
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=3.6e-25 Score=177.48 Aligned_cols=164 Identities=20% Similarity=0.211 Sum_probs=119.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-----
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----- 74 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----- 74 (207)
|+..+....++|+|+|+.++|||||+++|++..+. ....++.+++.....+...+.. .+.+|||||+.++...
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~ 104 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRV 104 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCH
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHH
Confidence 34445566799999999999999999999998873 4445666677777777777653 8999999999877654
Q ss_pred --cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546 75 --IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 75 --~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (207)
...++.++|++|+|+|++... ....|+..+... ++|+++|+||+|+.++... +....+...++++++++|
T Consensus 105 ~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred HHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence 244788999999999994332 234566666554 6899999999999766554 455556667789999999
Q ss_pred cCCCCChHHHHHHHHHHcCCC
Q 028546 153 AKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 153 ~~~~~~i~~~~~~l~~~~~~~ 173 (207)
+++|.|++++|++|.+.+.+.
T Consensus 177 Aktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999999655
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=1.1e-24 Score=176.44 Aligned_cols=165 Identities=21% Similarity=0.200 Sum_probs=118.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCCh----------hhhcccc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI 75 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 75 (207)
...++|+++|.+|+|||||+|+|++.... ....++++.+.....+..++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999988764 444566666766667777774 6899999997 3333333
Q ss_pred c-cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-HH----hCCeEE
Q 028546 76 P-SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-KE----FGVMFI 149 (207)
Q Consensus 76 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~ 149 (207)
. .++..+|++|+|+|++++.+++.. .|+..+... ++|+++|+||+|+.+......++..... .. .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 467899999999999987777665 466655542 6899999999999876655444333222 22 257999
Q ss_pred EEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546 150 ETSAKAGFNIKPLFRKIAAALPGMETLS 177 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~~~~~~ 177 (207)
++||++|.|++++|+.+.+.+.....+.
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~ 354 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSLRV 354 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999887554433
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=4e-24 Score=174.06 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=99.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc--------cccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI 79 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 79 (207)
.++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++ +.+.+|||||..++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 47899999999999999999998854 345566777777777777877 579999999987765443 3467
Q ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546 80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (207)
..+|++|+|+|++++.+++.+..+...+... . ++|+++|+||+|+.+..... ...+......+++++|+++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCH
Confidence 8999999999999877765433333322222 2 58999999999997654432 12233332478999999999999
Q ss_pred HHHHHHHHHHcC
Q 028546 160 KPLFRKIAAALP 171 (207)
Q Consensus 160 ~~~~~~l~~~~~ 171 (207)
++++++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=3.3e-23 Score=163.80 Aligned_cols=162 Identities=21% Similarity=0.199 Sum_probs=122.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---------cccc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPS 77 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 77 (207)
...++|+++|.+|+|||||+++|.+..+.....+..+.+.....+...+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3568999999999999999999998875433344444454444444444 5799999999754211 1223
Q ss_pred ccccCCEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q 028546 78 YIRDSSVAVIVYDVANRQ--SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA 155 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 155 (207)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+..++ +....++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999998866 67778888888877654 6899999999998655432 345556667788999999999
Q ss_pred CCChHHHHHHHHHHcCCC
Q 028546 156 GFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~ 173 (207)
|.|+++++++|.+.+...
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988543
No 130
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=4.1e-24 Score=174.03 Aligned_cols=165 Identities=21% Similarity=0.221 Sum_probs=122.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhhhcccc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI 75 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 75 (207)
...++|+++|.+++|||||+++|++... .....++++.+.....+..++. .+.+||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4569999999999999999999997753 3344566666666666777774 799999999 56665554
Q ss_pred c-cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCeEE
Q 028546 76 P-SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----GVMFI 149 (207)
Q Consensus 76 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 149 (207)
. .+++.+|++|+|+|++++.+ +....|+..+.. .+.|+++|+||+|+.+.++...++....+... +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 37789999999999997433 222344444443 25899999999999877777667766666654 57999
Q ss_pred EEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546 150 ETSAKAGFNIKPLFRKIAAALPGMETLS 177 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~~~~~~ 177 (207)
++||++|.|++++|+++.+.+.......
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~~ 374 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSLRV 374 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999886655444
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=9.1e-24 Score=165.35 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=121.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----hcccccccc---ccCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSYI---RDSS 83 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~d 83 (207)
+|+|+|.+++|||||+++|.+..+.....+.++.......+.+++. ..+.+||+||... +..+...++ ..+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6889999999999999999987654333444455555555656542 3799999999643 223334444 4599
Q ss_pred EEEEEEECCC---hHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCC
Q 028546 84 VAVIVYDVAN---RQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFIETSAKAG 156 (207)
Q Consensus 84 ~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 156 (207)
++|+|+|+++ ..+++.+..|+..+..... ..+|+++|+||+|+.+.. +....+...+. .+++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 7888888889988877542 478999999999986432 33455556665 68999999999
Q ss_pred CChHHHHHHHHHHcCCCcc
Q 028546 157 FNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~ 175 (207)
.|+++++++|.+.+.+...
T Consensus 315 ~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTPE 333 (342)
T ss_dssp STTHHHHHHHHHHHTSCCC
T ss_pred cCHHHHHHHHHHHHhhCcc
Confidence 9999999999999976544
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=5.8e-23 Score=166.52 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=104.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh---------hcccccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI 79 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 79 (207)
.+|+++|.+++|||||+|+|++.... ....++.+.+.....+.+.+. .+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999988753 345667777777777778774 689999999654 334566788
Q ss_pred ccCCEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH-HHHHHHhCC-eEEEEecCC
Q 028546 80 RDSSVAVIVYDVANRQSFLN--TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG-DGKAKEFGV-MFIETSAKA 155 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~ 155 (207)
+++|++|+|+|++++.+... +..|+.. . ++|+++|+||+|+.+.. .... ..+. .+++ +++++||.+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~---~---~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK---S---TVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH---H---TCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999986543322 3333322 2 58999999999974320 1112 2222 4566 789999999
Q ss_pred CCChHHHHHHHHHHcCC
Q 028546 156 GFNIKPLFRKIAAALPG 172 (207)
Q Consensus 156 ~~~i~~~~~~l~~~~~~ 172 (207)
|.|+.+++++|.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999998864
No 133
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=6.7e-23 Score=167.57 Aligned_cols=157 Identities=21% Similarity=0.210 Sum_probs=112.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-------FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 78 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 78 (207)
.++.++|+++|+.++|||||+++|.+.. +..+..++.+++.....+.+++ ..+.+|||||+++|...+..+
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 4567999999999999999999999876 3344455566665555666666 689999999999998888888
Q ss_pred cccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHh----CCeEE
Q 028546 79 IRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAKEF----GVMFI 149 (207)
Q Consensus 79 ~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~ 149 (207)
+..+|++|+|+|+++ +++.+.+. .+... ++|+++++||+|+.++... ..+++..++... +.+++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 999999999999987 44444432 22222 5788999999999753221 123344444444 57899
Q ss_pred EEecCCCCChHHHHHHHHHHcC
Q 028546 150 ETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
++||++|.|+++++++|.+.+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999999764
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=3.9e-22 Score=160.28 Aligned_cols=163 Identities=22% Similarity=0.191 Sum_probs=106.2
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhcCC---CCCccccccceeeeEE--EEEE-------------C--C----eEEE
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDK---FDTTYQATIGIDFLSK--TMYL-------------E--D----RTVR 59 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~--~~~~-------------~--~----~~~~ 59 (207)
+.....++|+++|+.++|||||+++|.+.. +..+..+..+++.... .+.. + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 344567999999999999999999998543 3344444334433222 2211 1 1 1368
Q ss_pred EEEEecCChhhhccccccccccCCEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--C
Q 028546 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--S 133 (207)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~ 133 (207)
+.+|||||+++|...+...+..+|++|+|+|+++ +++.+.+.. +... + ..|+++++||+|+.+..+. .
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l-~-~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL-G-IDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT-T-CCCEEEEEECTTSSCTTTTTTH
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc-C-CCeEEEEEEccCCCCHHHHHHH
Confidence 9999999999998887777889999999999995 344444332 2222 1 3579999999999765442 3
Q ss_pred HHHHHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 134 IEEGDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 134 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
.+++..++.. .+++++++||++|.|+++++++|.+.+..
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 4455555554 25789999999999999999999997764
No 135
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=1.8e-22 Score=155.97 Aligned_cols=163 Identities=16% Similarity=0.186 Sum_probs=114.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChh---------hhcccc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLI 75 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~ 75 (207)
..+..+|+++|++|+|||||+++|++..+.. ...+..+.+.....+..++ .++.+|||||.. .+....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence 4556789999999999999999999987632 2233333333333444444 589999999987 234455
Q ss_pred ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecC
Q 028546 76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAK 154 (207)
Q Consensus 76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~ 154 (207)
..++..+|++++|+|+++ +.....++..... ..+.|+++++||+|+.............+...++. .++++|++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 677889999999999976 3333334433322 23589999999999865222222333444444565 79999999
Q ss_pred CCCChHHHHHHHHHHcCCCcc
Q 028546 155 AGFNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 155 ~~~~i~~~~~~l~~~~~~~~~ 175 (207)
++.|+++++++|.+.+.+...
T Consensus 158 ~g~~v~~l~~~i~~~l~~~~~ 178 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPEATH 178 (301)
T ss_dssp TTTTHHHHHHHHHTTCCBCCC
T ss_pred CCCCHHHHHHHHHHhCCcCCC
Confidence 999999999999998875543
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=8.1e-22 Score=158.17 Aligned_cols=167 Identities=17% Similarity=0.105 Sum_probs=116.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccc-cce--------------eeeEEEEEE---CCeEEEEEEEecC
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQAT-IGI--------------DFLSKTMYL---EDRTVRLQLWDTA 66 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~-~~~--------------~~~~~~~~~---~~~~~~~~i~D~~ 66 (207)
...+.++|+++|++++|||||+++|++.......... .+. +........ ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4456799999999999999999999986443211000 000 000000000 1123689999999
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHh
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKEF 144 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~ 144 (207)
|+++|...+..++..+|++|+|+|++++.++....+++..+.... ..|+++++||+|+.+..+.. .+++..+....
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998765666667776665443 25899999999997543321 12222222222
Q ss_pred ---CCeEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546 145 ---GVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 145 ---~~~~~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
+++++++||++|.|+++++++|.+.+...
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 56899999999999999999999987643
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=5.4e-23 Score=167.55 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=116.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChh-hhccc--------ccccc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRSL--------IPSYI 79 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~~ 79 (207)
++|+++|.+++|||||+|+|.+..+ .....++++.+.....+.+++ ..+.+|||||.. .+... ...++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 8999999999999999999998864 345567777788778888877 579999999987 54421 24567
Q ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546 80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (207)
..+|++|+|+|++++.+++.. ++++.+ .++|+++|+||+|+.+. ...++...+. ..+++++++|+++|.|+
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEGL 392 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCCH
T ss_pred hcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCCH
Confidence 899999999999987666553 233322 26899999999999643 3334443332 23468999999999999
Q ss_pred HHHHHHHHHHcC
Q 028546 160 KPLFRKIAAALP 171 (207)
Q Consensus 160 ~~~~~~l~~~~~ 171 (207)
++++++|.+.+.
T Consensus 393 ~eL~~~l~~~~~ 404 (482)
T 1xzp_A 393 EKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHh
Confidence 999999999765
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1.2e-23 Score=170.47 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=109.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChh--------hhcccccccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI 79 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 79 (207)
..+|+++|.+|+|||||+|+|.+..+. ....++.+.+.......+.+ ..+.+|||||+. .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 478999999999999999999987764 23344444454444444444 579999999975 5666777889
Q ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q 028546 80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFN 158 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 158 (207)
.++|++|+|+|+.++.+... .++..+... .++|+++|+||+|+.+..... ..+. .+++ +++++||.+|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeCcCCCC
Confidence 99999999999987655433 233333222 368999999999986432211 1111 3455 789999999999
Q ss_pred hHHHHHHHHHHcCCCccCcccccccccccccCCCCCC
Q 028546 159 IKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNS 195 (207)
Q Consensus 159 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (207)
+.++++++.+.+.+...............-+.+++|+
T Consensus 152 v~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGK 188 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGK 188 (436)
T ss_dssp HHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSH
T ss_pred hHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCH
Confidence 9999999999887432111111112333456666653
No 139
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=1.9e-22 Score=163.27 Aligned_cols=154 Identities=19% Similarity=0.216 Sum_probs=106.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEEC
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLE 54 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (207)
....++|+++|++++|||||+++|++.. ...++.++.+++.....+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3456999999999999999999995431 122233455666666666555
Q ss_pred CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 028546 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQS---FL---NTSRWIEEVRTERGGDVI-IVLVGNKTDLV 127 (207)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~ 127 (207)
+ ..+.||||||+++|...+..++..+|++|||+|++++.. |+ ...+.+..+... .+| ++|++||+|+.
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~---~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA---GVKHLIVLINKMDDP 168 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc---CCCeEEEEeecCCCc
Confidence 5 589999999999999999889999999999999997531 11 111222222221 456 99999999985
Q ss_pred CCC--CCC----HHHHHHHHHHhC------CeEEEEecCCCCChHHHHH
Q 028546 128 DKR--QVS----IEEGDGKAKEFG------VMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 128 ~~~--~~~----~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~~ 164 (207)
+.. +.. ..+...+...++ ++++++||++|.|+.++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 321 111 222333444443 4799999999999999655
No 140
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=151.15 Aligned_cols=164 Identities=14% Similarity=0.147 Sum_probs=110.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ccceeeeEEEEEECCeEEEEEEEecCCh-----------hhhc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERFR 72 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~ 72 (207)
....++|+|+|++|+|||||+++|++..+.....+ +.+.+.....+.+++ ..+.||||||. ..+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 45569999999999999999999999888655544 455555556666666 47899999993 3444
Q ss_pred cccccccccCCEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC------HHHHHHHHHHh
Q 028546 73 SLIPSYIRDSSVAVIVYDVANRQS--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS------IEEGDGKAKEF 144 (207)
Q Consensus 73 ~~~~~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~ 144 (207)
..+..+++++|++|+|+|+++... ...+..+...+.... ..|+++|+||+|+.+...+. ......+....
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 455556678999999999975332 222333322222221 35899999999987654433 24567777888
Q ss_pred CCeEEEEecCCC-----CChHHHHHHHHHHcCCC
Q 028546 145 GVMFIETSAKAG-----FNIKPLFRKIAAALPGM 173 (207)
Q Consensus 145 ~~~~~~~s~~~~-----~~i~~~~~~l~~~~~~~ 173 (207)
+..++.++...+ .++.++++.+.+.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 888888877654 68999999998887543
No 141
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=2.8e-22 Score=166.89 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=112.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC--CC-------------CccccccceeeeEEEEEE---CCeEEEEEEEecCChhh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDK--FD-------------TTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQER 70 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~--~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~ 70 (207)
-.+|+++|+.++|||||+++|+... +. .+..++.++......+.+ ++..+.+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4799999999999999999998521 11 011122222222222322 45568999999999999
Q ss_pred hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---e
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---M 147 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 147 (207)
|...+..++..+|++|+|+|++++.+.+....|+..... ++|+++++||+|+.+.. .......+...+++ +
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----DLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD 157 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----TCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence 999999999999999999999987666776666665532 58999999999996543 12233445555666 4
Q ss_pred EEEEecCCCCChHHHHHHHHHHcCCC
Q 028546 148 FIETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 148 ~~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
++++||++|.|+++++++|.+.+...
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred EEEeecccCCCchhHHHHHhhcCCCc
Confidence 99999999999999999999998754
No 142
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=4.2e-22 Score=165.57 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=114.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC--CCC-------------CccccccceeeeEEEEEE---CCeEEEEEEEecCChh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD--KFD-------------TTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQE 69 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~--~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 69 (207)
+-.+|+++|+.++|||||+++|+.. .+. .+..++.++......+.+ ++..+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4579999999999999999999752 111 011122222211122222 4556899999999999
Q ss_pred hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q 028546 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV--- 146 (207)
Q Consensus 70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 146 (207)
+|...+..++..+|++|+|+|++++.+.+....|..... .++|+++++||+|+.+.. .......+...+++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPE 158 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcc
Confidence 999999899999999999999998777777777766543 268999999999986543 12233445555566
Q ss_pred eEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546 147 MFIETSAKAGFNIKPLFRKIAAALPGM 173 (207)
Q Consensus 147 ~~~~~s~~~~~~i~~~~~~l~~~~~~~ 173 (207)
+++++||++|.|+++++++|.+.+...
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred cEEEEEeecCCCchHHHHHHHHhcccc
Confidence 489999999999999999999998753
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=3e-22 Score=151.79 Aligned_cols=164 Identities=12% Similarity=0.128 Sum_probs=108.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC-CCCccccc-cceeeeEEEEEECCeEEEEEEEecCChhhhcccc---------
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDTTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------- 75 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------- 75 (207)
.+.++|+|+|++|+|||||+++|++.. +.....+. .+.+.........+ ..+.||||||..++....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 456999999999999999999999887 44333333 45555555666666 479999999977654322
Q ss_pred --ccccccCCEEEEEEECCChHHH-HHHHHHHHHHHHhcCCCCeEEEEEe-CCCCCCCCCCCH-------HHHHHHHHHh
Q 028546 76 --PSYIRDSSVAVIVYDVANRQSF-LNTSRWIEEVRTERGGDVIIVLVGN-KTDLVDKRQVSI-------EEGDGKAKEF 144 (207)
Q Consensus 76 --~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~ 144 (207)
..+++.+|++|+|+|+++.... ..+..++..+..... ..|+++++| |+|+.+. .+.. .........+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 2256889999999999862222 223333333321111 245666666 9998643 2111 2233355555
Q ss_pred CCe---E--EEEecCCCCChHHHHHHHHHHcCCCc
Q 028546 145 GVM---F--IETSAKAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 145 ~~~---~--~~~s~~~~~~i~~~~~~l~~~~~~~~ 174 (207)
+.. + +++||++|.|++++|++|.+.+....
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 532 2 78999999999999999999886543
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=1.4e-21 Score=154.35 Aligned_cols=159 Identities=18% Similarity=0.108 Sum_probs=110.3
Q ss_pred ee-EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh---------hhcccccccc
Q 028546 10 YK-LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI 79 (207)
Q Consensus 10 ~~-i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 79 (207)
++ |+++|.+|+|||||+++|.+..+.....+..+.+.....+.+++ ..+.+|||+|.- .+...+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 45 99999999999999999999887655566777777788888888 478999999962 2333333 46
Q ss_pred ccCCEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHh---CCeEEEEec
Q 028546 80 RDSSVAVIVYDVANRQ--SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGKAKEF---GVMFIETSA 153 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~s~ 153 (207)
..+|++++|+|++++. ....+..|...+......+.|+++|+||+|+.+..... ...+..++..+ +.+++++|+
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA 335 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISA 335 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBT
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 8999999999999876 45555556665555444568999999999986543100 11222233444 347899999
Q ss_pred CCCCChHHHHHHHHHHcC
Q 028546 154 KAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~ 171 (207)
+++.|+++++++|.+.+.
T Consensus 336 ~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhc
Confidence 999999999999998765
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=7.1e-23 Score=166.14 Aligned_cols=154 Identities=20% Similarity=0.237 Sum_probs=107.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc--------cccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI 79 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 79 (207)
.++|+++|++|+|||||+|+|.+..+. ....++++.+.....+.+++ ..+.+|||||...+...+ ..++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 478999999999999999999987543 44456666666666777777 578999999976654333 3357
Q ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546 80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159 (207)
Q Consensus 80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (207)
..+|++|+|+|++++.+... ..|+..+. ..|+++|+||+|+.+..... ....+ ..+.+++++|+++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~--~~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYP--ENITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCC--TTCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHh--ccCCcEEEEECCCCCCH
Confidence 89999999999998655444 34444442 36999999999997654433 01111 13568999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 028546 160 KPLFRKIAAALPGME 174 (207)
Q Consensus 160 ~~~~~~l~~~~~~~~ 174 (207)
++++++|.+.+....
T Consensus 372 ~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 372 DSLETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999987543
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=1.1e-21 Score=157.87 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=112.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC---CCCccccccceeeeEEEEEE---------------C--C----eEEEEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDK---FDTTYQATIGIDFLSKTMYL---------------E--D----RTVRLQL 62 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~---------------~--~----~~~~~~i 62 (207)
...++|+++|+.++|||||+++|++.. +..+..+..+++.......+ . + ....+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 446999999999999999999998543 33444454444333222222 1 1 1368999
Q ss_pred EecCChhhhccccccccccCCEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHH
Q 028546 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--VSIEE 136 (207)
Q Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~ 136 (207)
|||||+++|.......+..+|++|+|+|+++ +++.+.+.. +... + ..|+++++||+|+.+..+ ...++
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~-~-~~~iivviNK~Dl~~~~~~~~~~~~ 161 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII-G-QKNIIIAQNKIELVDKEKALENYRQ 161 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH-T-CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc-C-CCcEEEEEECccCCCHHHHHHHHHH
Confidence 9999999998887777889999999999995 344444332 2222 1 357999999999875432 12233
Q ss_pred HHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 137 GDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 137 ~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
+..++.. .+++++++|+++|.|+++++++|.+.+..
T Consensus 162 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 162 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 3444433 35789999999999999999999997764
No 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=9.1e-22 Score=148.04 Aligned_cols=167 Identities=10% Similarity=0.064 Sum_probs=109.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccc--cceeeeEEEEEECCeEEEEEEEecCChh--------hhccc
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSL 74 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~ 74 (207)
.....++|+++|.+|+|||||+|++++..+.....+. .+..........++ ..+.||||||.. .+...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 3456799999999999999999999998875443332 34444445555665 579999999962 23333
Q ss_pred ccccc----ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCC------CHHHHHHHH
Q 028546 75 IPSYI----RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQV------SIEEGDGKA 141 (207)
Q Consensus 75 ~~~~~----~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~ 141 (207)
...++ +++|++|+|+|+++.... ...++..+...++ .+.|++|++||+|+.+.... .......+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQ--DQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHH--HHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 33333 899999999999853221 1222333333322 25899999999998543211 113456667
Q ss_pred HHhCCeEEEEecCC-----CCChHHHHHHHHHHcCCCcc
Q 028546 142 KEFGVMFIETSAKA-----GFNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 142 ~~~~~~~~~~s~~~-----~~~i~~~~~~l~~~~~~~~~ 175 (207)
...+..+..++... +.+++++++.|.+++.+...
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 77788777777655 57999999999998875433
No 148
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=5.6e-22 Score=155.75 Aligned_cols=122 Identities=15% Similarity=0.226 Sum_probs=100.2
Q ss_pred EEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCCCe
Q 028546 48 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----------RQSFLNTSRWIEEVRTE-RGGDVI 116 (207)
Q Consensus 48 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p 116 (207)
...+.+++ +.+.+||++|++.++..|..++++++++|||||+++ ..++.....|+..+... ...++|
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 34455554 789999999999999999999999999999999998 45788888888888653 225799
Q ss_pred EEEEEeCCCCCCCC---------------CCCHHHHHHHHH-----------HhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546 117 IVLVGNKTDLVDKR---------------QVSIEEGDGKAK-----------EFGVMFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 117 ~ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
++|++||.|+.+++ ....+++..++. ..++.+++|||+++.||+++|+++.+.+
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 99999999985332 356677777765 2456889999999999999999999987
Q ss_pred C
Q 028546 171 P 171 (207)
Q Consensus 171 ~ 171 (207)
.
T Consensus 343 ~ 343 (353)
T 1cip_A 343 I 343 (353)
T ss_dssp H
T ss_pred H
Confidence 5
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=6.3e-24 Score=174.44 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=117.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il 87 (207)
+..+|+++|++++|||||+++|.+..+.....++.+.++....+...+. ..+.||||||++.|..++..++..+|++||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4689999999999999999999987765555556555554444444222 379999999999999999999999999999
Q ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHH---HHHh--CCeEEEEecCCCCChHH
Q 028546 88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGK---AKEF--GVMFIETSAKAGFNIKP 161 (207)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~s~~~~~~i~~ 161 (207)
|+|++++...+... .+..+. ..++|++|++||+|+.+..... ....... +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99999854443332 222232 2368999999999986533211 1111111 1111 24799999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028546 162 LFRKIAAALPGME 174 (207)
Q Consensus 162 ~~~~l~~~~~~~~ 174 (207)
++++|...+....
T Consensus 158 Lle~I~~l~~~~~ 170 (537)
T 3izy_P 158 LAEATIALAEMLE 170 (537)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHhhhccc
Confidence 9999999876443
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=4.5e-22 Score=163.04 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=100.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEECCe
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLEDR 56 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 56 (207)
..+||+++|++++|||||+++|++.. ...+..++.+++.....+...+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-
Confidence 46999999999999999999997541 1122223444444444444443
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHH-----HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-----TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-----~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
+.+.||||||+++|...+..++..+|++|+|+|++++..+.. ...+...+....+ ..|++||+||+|+.+..+
T Consensus 111 -~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 -ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp -CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-CCCEEEEEECGGGGTTCH
T ss_pred -ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-CCcEEEEEECcCcccchH
Confidence 689999999999999999999999999999999998643221 1222222222222 356999999999976444
Q ss_pred CCHHHHHHHH----HHh-----CCeEEEEecCCCCChHH
Q 028546 132 VSIEEGDGKA----KEF-----GVMFIETSAKAGFNIKP 161 (207)
Q Consensus 132 ~~~~~~~~~~----~~~-----~~~~~~~s~~~~~~i~~ 161 (207)
...++..... ..+ +++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 3333333333 223 45799999999999875
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.8e-22 Score=154.15 Aligned_cols=162 Identities=15% Similarity=0.229 Sum_probs=94.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-c-------ccccceeeeEEEEEECCeEEEEEEEecCChhhh------
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT-Y-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------ 71 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------ 71 (207)
....++|+|+|.+|+|||||+|++++...... + .++.+.+.....+..++..+.+.+|||||..+.
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 34569999999999999999999887655332 2 344455554455555555579999999996321
Q ss_pred -cccc-------cccc-------------ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 72 -RSLI-------PSYI-------------RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 72 -~~~~-------~~~~-------------~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
.... ..++ ..+|+++++++.+...-...-..++..+.. .+|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 1111 2222 237899999987652211222333444432 58999999999986543
Q ss_pred CCC--HHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 131 QVS--IEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
+.. ...+.......+++++++|+.++.++++++++|.+.++
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 322 12344455567899999999999999999999998764
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2.4e-21 Score=157.03 Aligned_cols=163 Identities=23% Similarity=0.246 Sum_probs=110.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc-----------
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------- 75 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 75 (207)
..++|+++|++|+|||||++++.+.... ....++.+.+.....+.+++. .+.+|||+|..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999988652 334455666666667777875 68899999975432211
Q ss_pred -ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH-HHH----hCCeEE
Q 028546 76 -PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGK-AKE----FGVMFI 149 (207)
Q Consensus 76 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~~~----~~~~~~ 149 (207)
..++..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+.+......++.... ... .+.+++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2356789999999999875554432 22222322 2589999999999976554444333222 222 256899
Q ss_pred EEecCCCCChHHHHHHHHHHcCCCccC
Q 028546 150 ETSAKAGFNIKPLFRKIAAALPGMETL 176 (207)
Q Consensus 150 ~~s~~~~~~i~~~~~~l~~~~~~~~~~ 176 (207)
++||++|.|++++|+.+.+.+.....+
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~~~~ 359 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASYTTK 359 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHTCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhccc
Confidence 999999999999999999987655433
No 153
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=1.5e-22 Score=163.86 Aligned_cols=156 Identities=17% Similarity=0.254 Sum_probs=103.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCCc-----------------------------cccccceeeeEEEEEEC
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYD--KFDTT-----------------------------YQATIGIDFLSKTMYLE 54 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 54 (207)
..+.++|+++|++++|||||+++|++. .+... ..++.+++.....+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 345799999999999999999999864 33211 12333444443344433
Q ss_pred CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHh-----cCCCCeEEEEEeCCCCCCC
Q 028546 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-----RGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~-----~~~~~p~ivv~nK~D~~~~ 129 (207)
+ ..+.+|||||+.+|...+..++..+|++|+|+|+++ .+|+.+..|..+.... .....|+++++||+|+.+.
T Consensus 83 ~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 K--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp S--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred C--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 3 589999999999999988889999999999999998 6666543332222111 1112468999999999753
Q ss_pred C--C----CCHHHHHHHHHHhC-----CeEEEEecCCCCChHHHHH
Q 028546 130 R--Q----VSIEEGDGKAKEFG-----VMFIETSAKAGFNIKPLFR 164 (207)
Q Consensus 130 ~--~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~ 164 (207)
. + ...+++..++..++ ++++++||++|.|+.+++.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 1 11344455555555 6799999999999986543
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=1.2e-22 Score=165.36 Aligned_cols=177 Identities=16% Similarity=0.178 Sum_probs=109.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCC--------hhhhcccccc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIPS 77 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~ 77 (207)
+...+|+++|.+|+|||||+|+|++..+. ....++.+.+..... +......+.+||||| ++.+......
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEE--CTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 45679999999999999999999987764 222333433333333 333335899999999 6777778888
Q ss_pred ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCC
Q 028546 78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAG 156 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 156 (207)
++.++|++|+|+|..++. .....++..+... .++|+++|+||+|+.+.... ... ....++ .++++||.+|
T Consensus 99 ~~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~~----~~e-~~~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGV--TAADEEVAKILYR--TKKPVVLAVNKLDNTEMRAN----IYD-FYSLGFGEPYPISGTHG 169 (456)
T ss_dssp HHHHCSEEEEEEESSSCS--CHHHHHHHHHHTT--CCSCEEEEEECC-------------CC-SGGGSSSSEEECCTTTC
T ss_pred hHhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH--cCCCEEEEEECccchhhhhh----HHH-HHHcCCCceEEeecccc
Confidence 899999999999997532 2223344333332 36899999999998543211 011 112333 5789999999
Q ss_pred CChHHHHHHHHHHcCCCccCcccccccccccccCCCCC
Q 028546 157 FNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVN 194 (207)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (207)
.|+.++++++.+.+.................-+.++++
T Consensus 170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vG 207 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVG 207 (456)
T ss_dssp TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSS
T ss_pred cchHHHHHHHHhhcccccccccccccceeEEecCCCCC
Confidence 99999999999887643322222222223345555555
No 155
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=4.3e-21 Score=148.73 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=99.3
Q ss_pred eeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCC
Q 028546 46 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------NRQSFLNTSRWIEEVRTER-GGD 114 (207)
Q Consensus 46 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~ 114 (207)
+....+.+.+ +.+.+||++|+++++..|..|+++++++|||+|++ +..++.....|+..+.... ..+
T Consensus 157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~ 234 (327)
T 3ohm_A 157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234 (327)
T ss_dssp EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence 3444555555 78999999999999999999999999999999665 5677888888888775432 257
Q ss_pred CeEEEEEeCCCCCCCC----------------CCCHHHHHHHHH----------HhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 115 VIIVLVGNKTDLVDKR----------------QVSIEEGDGKAK----------EFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 115 ~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
+|++|++||.|+.+++ ....+++..+.. ..++.++++||+++.||+++|..+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 9999999999986543 356667766632 33567889999999999999999999
Q ss_pred HcCC
Q 028546 169 ALPG 172 (207)
Q Consensus 169 ~~~~ 172 (207)
.+..
T Consensus 315 ~Il~ 318 (327)
T 3ohm_A 315 TILQ 318 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 156
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=1.1e-21 Score=158.70 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=102.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCC---CCc------------------------------cccccceeeeEEEEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DTT------------------------------YQATIGIDFLSKTMYL 53 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~---~~~------------------------------~~~~~~~~~~~~~~~~ 53 (207)
...++|+++|++++|||||+++|++... ... ..++.+++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3459999999999999999999986531 100 0012233333333333
Q ss_pred CCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-
Q 028546 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV- 132 (207)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~- 132 (207)
.+ ..+.+|||||+++|...+..++..+|++|+|+|++++.. ....+++..+... + ..|+++|+||+|+.+..+.
T Consensus 102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHHH
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHHH
Confidence 33 579999999999998888888999999999999997542 2233344433332 1 2469999999999753211
Q ss_pred ---CHHHHHHHHHHhC-----CeEEEEecCCCCChHHH
Q 028546 133 ---SIEEGDGKAKEFG-----VMFIETSAKAGFNIKPL 162 (207)
Q Consensus 133 ---~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~ 162 (207)
...+...++..++ ++++++||++|.|++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1233445555666 67999999999999874
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=4.1e-21 Score=158.21 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=84.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC------------------CCCC----ccccccceeeeEEEEEECCeEEEEEEEec
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD------------------KFDT----TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (207)
+..+|+|+|++++|||||+++|+.. .+.. +..++.++......+...+ +.+.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 4589999999999999999999611 1100 1112333334444455555 68999999
Q ss_pred CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
||+.+|...+..+++.+|++|+|+|++++.+......|. .+.. .++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999866655554443 3332 2689999999999854
No 158
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.2e-21 Score=141.71 Aligned_cols=117 Identities=19% Similarity=0.323 Sum_probs=89.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---cccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc-
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD- 81 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 81 (207)
....++|+++|++|+|||||+++|.+..+... ..++.+.++ ..+.+.+||+||...+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35679999999999999999999998876431 122222211 33579999999999888888777766
Q ss_pred ---CCEEEEEEECC-ChHHHHHHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCCCC
Q 028546 82 ---SSVAVIVYDVA-NRQSFLNTSRWIEEVRTE----RGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 82 ---~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~D~~~~~~ 131 (207)
+|++|+|+|++ +..++..+..|+..+... ...+.|+++|+||+|+.+...
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 889999988888777654 234799999999999976554
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=5e-21 Score=153.29 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=110.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC-------CCCC---------ccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD-------KFDT---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (207)
+.++|+++|++++|||||+++|++. .+.. +..+..+++. ....+......+.+|||||+.+|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence 4689999999999999999999863 1111 1122233333 23333333358999999999999
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHhC--
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQV---SIEEGDGKAKEFG-- 145 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 145 (207)
...+..++..+|++|+|+|+++....+.. +.+..+... ++| +++++||+|+.+..+. ..++...++..++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 88888889999999999999974333322 223333322 477 7899999998642211 1234455566555
Q ss_pred ---CeEEEEecCCCCC----------hHHHHHHHHHHcCC
Q 028546 146 ---VMFIETSAKAGFN----------IKPLFRKIAAALPG 172 (207)
Q Consensus 146 ---~~~~~~s~~~~~~----------i~~~~~~l~~~~~~ 172 (207)
++++++||++|.| +.++++.|.+.+..
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999999764 88999999988763
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=1.1e-20 Score=157.37 Aligned_cols=158 Identities=22% Similarity=0.211 Sum_probs=106.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC----------------CeEEEEEEEecCChhh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE----------------DRTVRLQLWDTAGQER 70 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 70 (207)
++.++|+++|++++|||||+++|++..+........+.+.....+... .....+.||||||+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 356899999999999999999998765533211111111111111110 0112599999999999
Q ss_pred hccccccccccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC------------HH
Q 028546 71 FRSLIPSYIRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS------------IE 135 (207)
Q Consensus 71 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~ 135 (207)
|..++..++..+|++|+|+|+++ +++++.+.. +.. .++|+++++||+|+....... ..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999998 666655432 222 268999999999986432210 00
Q ss_pred -----------HHHHHHHHhC---------------CeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 136 -----------EGDGKAKEFG---------------VMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 136 -----------~~~~~~~~~~---------------~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
+........+ .+++++||++|.|+++++++|...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 1111111112 37999999999999999999998765
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=1.5e-21 Score=156.83 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=112.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--------CCCCc---------cccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD--------KFDTT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (207)
...++|+++|++++|||||+++|++. .+... ..++.+++. ....+......+.+|||||++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCChH
Confidence 45699999999999999999999873 22111 122333333 333333333589999999999
Q ss_pred hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHhC
Q 028546 70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQV---SIEEGDGKAKEFG 145 (207)
Q Consensus 70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 145 (207)
+|...+..++..+|++|+|+|++++.. ....+++..+... ++| +++++||+|+.+..+. ...+...++..++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998888888999999999999987543 2334555555443 477 8999999998642211 1223445555554
Q ss_pred -----CeEEEEecCCCCC------------------hHHHHHHHHHHcC
Q 028546 146 -----VMFIETSAKAGFN------------------IKPLFRKIAAALP 171 (207)
Q Consensus 146 -----~~~~~~s~~~~~~------------------i~~~~~~l~~~~~ 171 (207)
.+++++||++|.| +.++++.|.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6899999999987 7888888888775
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.6e-21 Score=161.11 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=103.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-------------------------------ccccceeeeEEEEEECC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-------------------------------QATIGIDFLSKTMYLED 55 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 55 (207)
...++|+++|++++|||||+++|++....... .++.+++.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34699999999999999999999866332111 13444444444554444
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHH------HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFL------NTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~------~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
+.+.||||||+++|...+..++..+|++|+|+|++++. ++ ........+....+ ..|++||+||+|+.+.
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~-~e~~~~~~~qt~e~l~~~~~lg-i~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA-FESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDW 320 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH-HHTTCCTTSHHHHHHHHHHTTT-CCEEEEEEECTTTTTT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc-ccccchhhhHHHHHHHHHHHcC-CCeEEEEEecccccch
Confidence 58999999999999999999999999999999998642 11 11111111222222 3569999999999764
Q ss_pred CCCCHHHH----HHHHHHh-----CCeEEEEecCCCCChHHH
Q 028546 130 RQVSIEEG----DGKAKEF-----GVMFIETSAKAGFNIKPL 162 (207)
Q Consensus 130 ~~~~~~~~----~~~~~~~-----~~~~~~~s~~~~~~i~~~ 162 (207)
.+...+.+ ..+...+ +++++++||++|.|+.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 33323322 3333333 358999999999999876
No 163
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=6e-21 Score=149.88 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=91.2
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCC
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------NRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKT 124 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~ 124 (207)
..+.+.+|||+|+++++..|..++++++++|||||++ +..+++....|+..+.... ..++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7789999999998886542 3579999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------hCCeEEEEecCCCCChHHHHHHHH
Q 028546 125 DLVDKRQ--V-------------------SIEEGDGKAKE----------------FGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|+.+++. + ..+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1 13444444332 123468999999999999999999
Q ss_pred HHcC
Q 028546 168 AALP 171 (207)
Q Consensus 168 ~~~~ 171 (207)
+.+.
T Consensus 341 ~~I~ 344 (354)
T 2xtz_A 341 ETLR 344 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=3.8e-21 Score=152.22 Aligned_cols=146 Identities=12% Similarity=0.046 Sum_probs=105.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d 90 (207)
+|+++|++++|||||+++|+ .+..+++.....+...+ ..+.+|||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 23333444444444444 579999999999998888888899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCeE-EEEEe-CCCCCCCCCCCH--HHHHHHHHHh---CCeEEE--EecCC---CCC
Q 028546 91 VANRQSFLNTSRWIEEVRTERGGDVII-VLVGN-KTDLVDKRQVSI--EEGDGKAKEF---GVMFIE--TSAKA---GFN 158 (207)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~s~~~---~~~ 158 (207)
+. ..+....+++..+... .+|. ++++| |+|+ ++..... +++..+...+ .+++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 54 2334445555544433 4666 88999 9998 4322211 2333333333 368999 99999 999
Q ss_pred hHHHHHHHHHHcCC
Q 028546 159 IKPLFRKIAAALPG 172 (207)
Q Consensus 159 i~~~~~~l~~~~~~ 172 (207)
+++++++|.+.+..
T Consensus 167 i~~L~~~l~~~~~~ 180 (370)
T 2elf_A 167 VDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc
Confidence 99999999988754
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.84 E-value=1.6e-22 Score=164.93 Aligned_cols=154 Identities=22% Similarity=0.264 Sum_probs=109.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (207)
++..+|+++|++++|||||+++|.+..+.....++.+.+.....+..++ ..+.||||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999987666544444444444333343444 47899999999999999999999999999
Q ss_pred EEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC--CCCHH--HHHHHHHHhC--CeEEEEecCCCC
Q 028546 87 IVYDVANR---QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR--QVSIE--EGDGKAKEFG--VMFIETSAKAGF 157 (207)
Q Consensus 87 lv~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~s~~~~~ 157 (207)
||+|++++ ++.+.+ ..+.. .++|+++++||+|+.+.. .+... ....+...++ ++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999873 333332 22222 258999999999986432 11100 0000112222 689999999999
Q ss_pred ChHHHHHHHHHH
Q 028546 158 NIKPLFRKIAAA 169 (207)
Q Consensus 158 ~i~~~~~~l~~~ 169 (207)
|+++++++|...
T Consensus 153 gI~eLle~I~~~ 164 (501)
T 1zo1_I 153 GIDELLDAILLQ 164 (501)
T ss_dssp TCTTHHHHTTTT
T ss_pred Ccchhhhhhhhh
Confidence 999999998764
No 166
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=5.1e-22 Score=156.96 Aligned_cols=162 Identities=15% Similarity=0.246 Sum_probs=88.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccc--------cccceeeeEEEEEECCeEEEEEEEecCCh-------hhh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~ 71 (207)
..++|+|+|++|+|||||+++|++... ..... ++.+.......+...+..+.+.+|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 358999999999999999999876543 22221 23333333333444566678999999998 555
Q ss_pred ccccc-------cccccC-------------CEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 72 RSLIP-------SYIRDS-------------SVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 72 ~~~~~-------~~~~~~-------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
..++. .++.++ |+++|+++.+ ..++..+. .++..+ ..++|+++|+||+|+...+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 55554 444433 3455555542 23344433 333333 3468999999999997665
Q ss_pred CCCH--HHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546 131 QVSI--EEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175 (207)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~ 175 (207)
++.. ..+..++..++++++++|++++.+ ++.|.++.+.+.+.-+
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 5433 355556666788999999999998 7888777777654443
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=9.4e-22 Score=160.35 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=89.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc--CCCC-----------------------------CccccccceeeeEEEEEECC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFD-----------------------------TTYQATIGIDFLSKTMYLED 55 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 55 (207)
...++|+++|+.++|||||+++|++ +.+. .+.....+++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 3458999999999999999999974 2221 01122334444334444454
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCC-
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---SFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKR- 130 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~- 130 (207)
..+.||||||+++|...+...+..+|++|||+|++++. +|+....+...+......++| ++|++||+|+.+..
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 58999999999999998888899999999999999752 232111222222211122466 99999999985421
Q ss_pred -C----CCHHHHHHHHHHh-------CCeEEEEecCCCCChHHHH
Q 028546 131 -Q----VSIEEGDGKAKEF-------GVMFIETSAKAGFNIKPLF 163 (207)
Q Consensus 131 -~----~~~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~ 163 (207)
+ ....+...++..+ +++++++|+++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 1122345555555 3569999999999998755
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.83 E-value=7e-22 Score=160.75 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=102.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------ccccccceeeeEEEEEECC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDT-----------------------------TYQATIGIDFLSKTMYLED 55 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 55 (207)
...++|+++|++++|||||+++|++. .+.. ++.++.+++.....+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45699999999999999999999864 2211 0112334444444444444
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---HHH---HHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---SFL---NTSRWIEEVRTERGGDVI-IVLVGNKTDLVD 128 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~ 128 (207)
..+.||||||+.+|...+..++..+|++|||+|++++. +|+ ...+.+..+.. . .+| ++|++||+|+.+
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~--~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-L--GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-T--TCCEEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-c--CCCeEEEEEEcccccc
Confidence 68999999999999998888999999999999999652 221 22222222222 2 354 999999999963
Q ss_pred CCCC----CHHHHHHHHHHhC-----CeEEEEecCCCCChHHH
Q 028546 129 KRQV----SIEEGDGKAKEFG-----VMFIETSAKAGFNIKPL 162 (207)
Q Consensus 129 ~~~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~ 162 (207)
..+. ...+...++..++ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 2211 1233444555555 68999999999998744
No 169
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=3.8e-20 Score=143.94 Aligned_cols=124 Identities=22% Similarity=0.265 Sum_probs=96.4
Q ss_pred eEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCCC
Q 028546 47 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------NRQSFLNTSRWIEEVRTER-GGDV 115 (207)
Q Consensus 47 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~ 115 (207)
....+.+.+ +.+.+||++|+++++..|..++++++++|||||++ +..++.....|+..+.... ..++
T Consensus 152 ~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~ 229 (340)
T 4fid_A 152 HEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA 229 (340)
T ss_dssp EEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence 333444444 78999999999999999999999999999999998 6788888888888876543 3579
Q ss_pred eEEEEEeCCCCCCCC---------------CCCHHHHHHHHH-Hh--------------------------CCeEEEEec
Q 028546 116 IIVLVGNKTDLVDKR---------------QVSIEEGDGKAK-EF--------------------------GVMFIETSA 153 (207)
Q Consensus 116 p~ivv~nK~D~~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~s~ 153 (207)
|++|++||+|+.+++ ....+++..+.. ++ .+.++++||
T Consensus 230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA 309 (340)
T 4fid_A 230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA 309 (340)
T ss_dssp EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred eEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence 999999999985321 123444433332 23 356789999
Q ss_pred CCCCChHHHHHHHHHHcCC
Q 028546 154 KAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~ 172 (207)
+++.+++.+|+.+.+.+..
T Consensus 310 ~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 310 TDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=6.4e-21 Score=147.17 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=102.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC------ccccc----------------------ccee-------------
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDT------TYQAT----------------------IGID------------- 45 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~------~~~~~----------------------~~~~------------- 45 (207)
...++|+|+|.+|+|||||+++|++..+.. ++.++ .+.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999988731 11222 0000
Q ss_pred ----------eeEEEEEECCeEEEEEEEecCChh-------------hhccccccccccCCEEE-EEEECCChHHHHHHH
Q 028546 46 ----------FLSKTMYLEDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-IVYDVANRQSFLNTS 101 (207)
Q Consensus 46 ----------~~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~ 101 (207)
.....+...+ ...+.+|||||.. .+...+..++..++.+| +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000110 2479999999963 34556677888888776 799998654433333
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh--C-CeEEEEecCCCCChHHHHHHHHHH
Q 028546 102 RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF--G-VMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 102 ~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
.++..+. ..+.|+++|+||+|+.+................ + .+++++||++|.|+++++++|.+.
T Consensus 183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 3444332 246899999999999765443222222110011 2 367899999999999999998874
No 171
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=3e-19 Score=135.41 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=90.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc-----
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR----- 80 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 80 (207)
+++++|+++|..|+|||||+++|++..+. ....+..+.......+..++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46799999999999999999999988763 23334444555555566666 48999999998877665544443
Q ss_pred ----cCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCC--CeEEEEEeCCCCCCCCCCCHH
Q 028546 81 ----DSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGD--VIIVLVGNKTDLVDKRQVSIE 135 (207)
Q Consensus 81 ----~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~~~~~~~ 135 (207)
++|+++||++++... +.. ...|+..+....+.. .|+++|+||+|+.+..+...+
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 789999999997644 333 346666676655433 389999999999655544443
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=3.7e-20 Score=161.37 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=109.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCC-------ccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-------FDT-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (207)
....++|+++|++++|||||+++|++.. +.. ...+..++++....+.+......+.+|||||+.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3456999999999999999999998631 100 00122222222222333333468999999999999
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHhC--
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQV---SIEEGDGKAKEFG-- 145 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 145 (207)
......++..+|++|+|+|++++... ...+++..+... ++| ++|++||+|+.+..+. ..+++..++..++
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888889999999999999975322 233444444433 477 7999999999753221 1234455565555
Q ss_pred ---CeEEEEecCCC--------CChHHHHHHHHHHcC
Q 028546 146 ---VMFIETSAKAG--------FNIKPLFRKIAAALP 171 (207)
Q Consensus 146 ---~~~~~~s~~~~--------~~i~~~~~~l~~~~~ 171 (207)
++++++|+++| .|+.+++++|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 58999999999 468899999988775
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=3.4e-21 Score=160.86 Aligned_cols=160 Identities=23% Similarity=0.285 Sum_probs=87.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEECC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLED 55 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (207)
...++|+++|++++|||||+++|++.. +..+..++.+++.....+...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 445899999999999999999996321 111223344444444444443
Q ss_pred eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---HH--HH-HHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 028546 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---SF--LN-TSRWIEEVRTERGGDVI-IVLVGNKTDLVD 128 (207)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~--~~-~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~ 128 (207)
...+.||||||+.+|...+..++..+|++|||+|++++. .+ .. ....+..+.. . .+| ++||+||+|+.+
T Consensus 254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l--gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L--GISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S--SCCCEEEEEECGGGGT
T ss_pred -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c--CCCeEEEEEecccccc
Confidence 368999999999999998888999999999999998532 11 11 1111222222 2 355 999999999865
Q ss_pred CCCCCH----HHHHHHH-HHhCC-----eEEEEecCCCCChH--------------HHHHHHHHHcC
Q 028546 129 KRQVSI----EEGDGKA-KEFGV-----MFIETSAKAGFNIK--------------PLFRKIAAALP 171 (207)
Q Consensus 129 ~~~~~~----~~~~~~~-~~~~~-----~~~~~s~~~~~~i~--------------~~~~~l~~~~~ 171 (207)
...... ..+..+. ..+++ +++++||++|.|+. .+++.|...+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 322112 2222233 23344 69999999999998 67777766543
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1e-19 Score=133.34 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=100.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----------hccc
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL 74 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~ 74 (207)
+.....+|+++|++|+|||||++++.+..+.....++.+.......+.+++ .+.+||+||... +...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 344568999999999999999999998874333333444333333333333 578999999632 2333
Q ss_pred ccccc---ccCCEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHhC--
Q 028546 75 IPSYI---RDSSVAVIVYDVANRQSFLN--TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAKEFG-- 145 (207)
Q Consensus 75 ~~~~~---~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~-- 145 (207)
...++ ..++++++++|++++.+... +..|+. . ...|++++.||+|+.+..+. ....+..++...+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 33344 46899999999987544332 222322 1 25889999999998653221 1234444444443
Q ss_pred CeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 146 VMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 146 ~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
+.++++|++++.++++++++|.+.+.+
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 478899999999999999999998764
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=2.4e-19 Score=151.74 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=82.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc------------------ccccceeeeEEEEEECCeEEEEEE
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY------------------QATIGIDFLSKTMYLEDRTVRLQL 62 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i 62 (207)
|.+....+-.+|+++|+.|+|||||+++|++....... ....++......+...+ +.+.+
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nl 78 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFL 78 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEE
Confidence 55666666789999999999999999999843221000 11222322333333343 68999
Q ss_pred EecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
|||||+.+|...+..++..+|++++|+|+++...... ..++..+... ++|+++++||+|+.
T Consensus 79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence 9999999999889999999999999999986543333 2344444432 58999999999985
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=1.3e-18 Score=139.16 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=111.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----hcccccc---ccccCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPS---YIRDSS 83 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~---~~~~~d 83 (207)
.|+++|++|||||||++++.+........+..+.......+..++ ...+.+||+||... +..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 578999999999999999998754222223333344444455554 23789999999632 1112222 245799
Q ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546 84 VAVIVYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161 (207)
Q Consensus 84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 161 (207)
.+++++|++ ...+..+..+...+..... ...|.++++||+|+... .............+..++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999997 4556666666655544321 24788999999998654 223334444455678999999999999999
Q ss_pred HHHHHHHHcCCCcc
Q 028546 162 LFRKIAAALPGMET 175 (207)
Q Consensus 162 ~~~~l~~~~~~~~~ 175 (207)
++++|.+.+.+...
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999976544
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=5.8e-18 Score=139.59 Aligned_cols=115 Identities=22% Similarity=0.209 Sum_probs=78.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCC--CCC--------------------ccccccceeeeEEEEEECCeEEEEEEEec
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDT--------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (207)
+..+|+++|++++|||||+++|+... +.. +..++.++......+...+ +.+.+|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 46899999999999999999998531 100 0011112222223334444 68999999
Q ss_pred CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
||+.+|...+..++..+|++|+|+|++++..... ..++..+ ...++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 9999998888889999999999999987532222 2222222 223689999999999864
No 178
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=3.7e-18 Score=130.00 Aligned_cols=126 Identities=11% Similarity=0.096 Sum_probs=85.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccc--------
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-------- 77 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 77 (207)
...++|+++|.+|+|||||+|+|++..+.. ...+..+.+.....+...+ ..+.+|||||..++......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 357999999999999999999999887632 2223333333333444444 68999999998765433221
Q ss_pred -ccccCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCC--CeEEEEEeCCCCCCCCCCCHH
Q 028546 78 -YIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGD--VIIVLVGNKTDLVDKRQVSIE 135 (207)
Q Consensus 78 -~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~~~~~~~ 135 (207)
....+|++|||+|++.. ++.. ...|+..+....+.+ .|+++|+||+|+.++.+...+
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~ 175 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD 175 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence 13479999999998753 2333 346777776655433 699999999999766554443
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=4.1e-18 Score=144.68 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=83.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC--CC------CC----------ccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KF------DT----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (207)
.+..+|+|+|++++|||||+++|+.. .+ .. +.....++......+...+ +.+.+|||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence 44689999999999999999999832 11 00 0012233333334444454 68999999999
Q ss_pred hhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 69 ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
.+|...+..++..+|++|+|+|+++..+......|.. +... ++|+++++||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 9999999999999999999999998777666655554 3322 689999999999864
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.77 E-value=8.1e-19 Score=136.39 Aligned_cols=114 Identities=20% Similarity=0.242 Sum_probs=71.6
Q ss_pred EEEEEEecCChhh-------------hccccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546 58 VRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNK 123 (207)
Q Consensus 58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK 123 (207)
..+.+|||||..+ +......++..+|++|+|+|.++.. .......+...+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4799999999653 4455677889999999999984322 111111222222 2236899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCeEEEEec---CC---CCChHHHHHHHHHHcCCCc
Q 028546 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSA---KA---GFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~---~~~i~~~~~~l~~~~~~~~ 174 (207)
+|+.+......+........++..++++++ .+ +.|+.++++.+.+.+....
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 999765542232222111112245666654 44 7899999999999887543
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=2.3e-18 Score=146.30 Aligned_cols=162 Identities=12% Similarity=0.178 Sum_probs=106.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccccccee--ee-----EEEEEE--------------------------
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGID--FL-----SKTMYL-------------------------- 53 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~--~~-----~~~~~~-------------------------- 53 (207)
..++|+|+|.+|+|||||+|+|++..+.. ...+++..- +. ..+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35899999999999999999999887532 223333100 00 001111
Q ss_pred --------------------CCeE--EEEEEEecCChhhh---ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHH
Q 028546 54 --------------------EDRT--VRLQLWDTAGQERF---RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVR 108 (207)
Q Consensus 54 --------------------~~~~--~~~~i~D~~G~~~~---~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~ 108 (207)
.... ..+.+|||||.... ...+..++.++|++|+|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 1000 25899999996653 3455678899999999999998766666555544433
Q ss_pred HhcCCCCeEEEEEeCCCCCCCCCCCHH----------HHHHH----HH-H--------hCCeEEEEecC-----------
Q 028546 109 TERGGDVIIVLVGNKTDLVDKRQVSIE----------EGDGK----AK-E--------FGVMFIETSAK----------- 154 (207)
Q Consensus 109 ~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~~----~~-~--------~~~~~~~~s~~----------- 154 (207)
. ...|+++|+||+|+........+ ..... .. . ...+++++|++
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 25789999999998654311110 11111 11 1 12369999999
Q ss_pred ---CCCChHHHHHHHHHHcCC
Q 028546 155 ---AGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 155 ---~~~~i~~~~~~l~~~~~~ 172 (207)
++.|+++++++|.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999987753
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.76 E-value=1.7e-17 Score=140.91 Aligned_cols=118 Identities=22% Similarity=0.253 Sum_probs=84.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhc--CCCCC----------------ccccccceeeeEEEEEECCeEEEEEEEecC
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMY--DKFDT----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (207)
+..+..+|+|+|++++|||||+++|+. +.+.. +..+..++......+.+.+ +.+.+||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence 345568999999999999999999984 22210 0012233333334444554 689999999
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
|+.++...+..+++.+|++|+|+|++++.+......|.. +... ++|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 999999889999999999999999998766666555443 3332 689999999999864
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=2.3e-19 Score=143.11 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=48.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEE---------------------ECC-eEEEEEEEecCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMY---------------------LED-RTVRLQLWDTAG 67 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G 67 (207)
++|+++|.+++|||||+|+|++........+.++++....... +++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998875433444444443333221 122 246899999999
Q ss_pred hhhh----cccc---ccccccCCEEEEEEECCCh
Q 028546 68 QERF----RSLI---PSYIRDSSVAVIVYDVANR 94 (207)
Q Consensus 68 ~~~~----~~~~---~~~~~~~d~~ilv~d~~~~ 94 (207)
.... ..+. ..+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 2222 2457899999999999874
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=2.9e-19 Score=137.97 Aligned_cols=166 Identities=15% Similarity=0.217 Sum_probs=89.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC-CCCCccc--------cccceeeeEEEEEECCeEEEEEEEecCCh-------hhh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD-KFDTTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~ 71 (207)
..++|+|+|++|+|||||++++.+. .++.... ++.........+...+....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3589999999999999999998875 4433221 11111111222223344568999999997 444
Q ss_pred ccccc-------cccc-------------cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 72 RSLIP-------SYIR-------------DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 72 ~~~~~-------~~~~-------------~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
..... .++. .+++++|+.+.+. .+++.+.. ..+.... ...|+++|+||.|+....+
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~-~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIH-NKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHT-TTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHH-hcCCEEEEEEeCCCCCHHH
Confidence 43333 3322 2344666665432 12333221 2222222 3578999999999875544
Q ss_pred C--CHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCCCccCcc
Q 028546 132 V--SIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSS 178 (207)
Q Consensus 132 ~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~~ 178 (207)
+ ..+.+..++..+++++|++|++++ +++++|.++.+.+.+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~av 220 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPFSV 220 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCceE
Confidence 3 235667778888999999999999 999999999998876555443
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=4.4e-17 Score=138.55 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=83.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCC------------c----cccccceeeeEEEEEECC-----eEEEEEE
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYD--KFDT------------T----YQATIGIDFLSKTMYLED-----RTVRLQL 62 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~--~~~~------------~----~~~~~~~~~~~~~~~~~~-----~~~~~~i 62 (207)
..+..+|+|+|+.++|||||+++|+.. .+.. . ..+..++......+.+.+ ..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 345689999999999999999999742 1110 0 012222322223333332 3378999
Q ss_pred EecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
|||||+.+|...+..+++.+|++|+|+|+++.........|.. +.. .++|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCccc
Confidence 9999999999999999999999999999998655555444432 222 2689999999999854
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=4e-19 Score=140.64 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=102.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcccccccee---ee---------------------------------------
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGID---FL--------------------------------------- 47 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~---~~--------------------------------------- 47 (207)
.+|+|+|++|||||||+++|++..+.+......+.. ..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 599999999999999999999987632221111100 00
Q ss_pred ------------EEEEEECCeEEEEEEEecCChhhh-------------ccccccccccCCEEEEEEECCChHHHHHHHH
Q 028546 48 ------------SKTMYLEDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVIVYDVANRQSFLNTSR 102 (207)
Q Consensus 48 ------------~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~ 102 (207)
...+... ....+.+|||||..++ ......++.++|++|+|+|.++..... ..
T Consensus 115 ~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp SCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred cCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 0000111 1136899999997765 456677899999999999876432221 23
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546 103 WIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167 (207)
Q Consensus 103 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 167 (207)
|+..+........|+++|+||+|+.+......+........++.+|+.+++.++.++++.+..+.
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 44444444445679999999999987655544444444445677899999999888876655443
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=136.12 Aligned_cols=159 Identities=16% Similarity=0.229 Sum_probs=81.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccc--------cccceeeeEEEEEECCeEEEEEEEecCChhhhcc-------
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------- 73 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 73 (207)
.++|+|+|++|+|||||+++|.+..+..... ++.........+...+....+++||++|...+..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 4889999999999999999999887632111 1111111111222233345799999999764311
Q ss_pred ------------------ccccccccCCEEEEEEECCCh-HHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028546 74 ------------------LIPSYIRDSSVAVIVYDVANR-QSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS 133 (207)
Q Consensus 74 ------------------~~~~~~~~~d~~ilv~d~~~~-~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~ 133 (207)
....++.++++.+++|..... .++..+ ..|+..+. ..+|+|+|+||+|+....++.
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHH
Confidence 112344455544444433321 233333 24555553 268999999999987665544
Q ss_pred H--HHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 134 I--EEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 134 ~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
. ..+...+...+++++++|+.++.++.++|..|.+.++
T Consensus 187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 187 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 3 5667777788999999999999999998888877654
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=2e-18 Score=133.30 Aligned_cols=135 Identities=18% Similarity=0.162 Sum_probs=109.5
Q ss_pred HHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH-HHHHHH
Q 028546 24 SIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTS 101 (207)
Q Consensus 24 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~ 101 (207)
+|+.++..+.|. ..+.++.+..+. ..+..++ .+.+||+ +++++.++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888888 777888884443 3322222 7899999 8899999999999999999999999887 788899
Q ss_pred HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCCCChHHHHHHHHHH
Q 028546 102 RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 102 ~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
.|+..+.. .++|+++|+||+|+.+++.+ ++...++..++ ++++++||++|.|++++|.++...
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 99987765 26899999999999655432 44566777777 899999999999999999987654
No 189
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.73 E-value=1.4e-17 Score=131.26 Aligned_cols=123 Identities=16% Similarity=0.187 Sum_probs=92.8
Q ss_pred eEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCCC
Q 028546 47 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----------RQSFLNTSRWIEEVRTE-RGGDV 115 (207)
Q Consensus 47 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~ 115 (207)
....+.+++ +.+.+||++|++.++..|..++++++++|||+|+++ ..++.....|+..+... ...++
T Consensus 192 ~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 192 HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred EEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 345556665 789999999999999999999999999999999998 67899998898887654 23579
Q ss_pred eEEEEEeCCCCCCCC----------------CCCHHHHHHHHH-----------HhCCeEEEEecCCCCChHHHHHHHHH
Q 028546 116 IIVLVGNKTDLVDKR----------------QVSIEEGDGKAK-----------EFGVMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 116 p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
|++|++||+|+.+++ ....+++..++. ..++.+++|||+++.|++++|+++.+
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 999999999986432 255666665541 23567899999999999999999998
Q ss_pred HcC
Q 028546 169 ALP 171 (207)
Q Consensus 169 ~~~ 171 (207)
.+.
T Consensus 350 ~i~ 352 (362)
T 1zcb_A 350 TIL 352 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 190
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.72 E-value=4.7e-17 Score=129.27 Aligned_cols=124 Identities=14% Similarity=0.176 Sum_probs=98.5
Q ss_pred eeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCC
Q 028546 46 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----------RQSFLNTSRWIEEVRTE-RGGD 114 (207)
Q Consensus 46 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~ 114 (207)
+....+.+++ +.+.+||++|++.++..|..++++++++|||||+++ ..+|+....|+..+... ...+
T Consensus 207 i~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~ 284 (402)
T 1azs_C 207 IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 284 (402)
T ss_dssp EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS
T ss_pred eEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC
Confidence 3345566665 789999999999999999999999999999999998 88999999999988764 3357
Q ss_pred CeEEEEEeCCCCCCCCC---C---------------------------CHHHHHHHH-----HH--------hCCeEEEE
Q 028546 115 VIIVLVGNKTDLVDKRQ---V---------------------------SIEEGDGKA-----KE--------FGVMFIET 151 (207)
Q Consensus 115 ~p~ivv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~ 151 (207)
+|++||+||.|+.+++. + ..+.+..++ .. ..+.+++|
T Consensus 285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T 364 (402)
T 1azs_C 285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 364 (402)
T ss_dssp CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence 99999999999854322 1 123444442 22 23567899
Q ss_pred ecCCCCChHHHHHHHHHHcC
Q 028546 152 SAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 152 s~~~~~~i~~~~~~l~~~~~ 171 (207)
||+++.||+++|.++.+.+.
T Consensus 365 SA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHHH
Confidence 99999999999999988775
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.71 E-value=3.3e-16 Score=129.70 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=83.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC------------------CC----CCccccccceeeeEEEEEECCeEEEEEEEec
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD------------------KF----DTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (207)
+.-+|+|+|+.++|||||..+|+.. .+ ..+..+..++.-....+.+.+ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 4578999999999999999999611 11 223344555555555666666 68999999
Q ss_pred CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
||+.+|.......++-+|++|+|+|+..+-..++..-|.+.. .+ ++|.++++||+|..
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~---~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR---ATPVMTFVNKMDRE 165 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT---TCCEEEEEECTTSC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh---CCceEEEEecccch
Confidence 999999999999999999999999999765555555554433 33 69999999999974
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=4.6e-17 Score=120.13 Aligned_cols=155 Identities=16% Similarity=0.139 Sum_probs=94.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc------ccccce--------eeeEEEEEE----------------CCeEE
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY------QATIGI--------DFLSKTMYL----------------EDRTV 58 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~----------------~~~~~ 58 (207)
..+|+++|.+|+|||||+++|......... .+..+. ......+.. ....+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 468999999999999999999865221110 010000 000001111 01124
Q ss_pred EEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028546 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD 138 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 138 (207)
.+.+|||+|+..... .+....+.+++|+|+++... ....+...+ ..|+++|+||+|+.+......+...
T Consensus 110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF------RVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH------HTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh------hcCCEEEEecccCCcchhhHHHHHH
Confidence 788999998411111 11135788999999976432 111111111 3678999999998654334556666
Q ss_pred HHHHHh--CCeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546 139 GKAKEF--GVMFIETSAKAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 139 ~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~ 174 (207)
..+... +.+++++|+++|.|+++++++|.+.+....
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 666554 468999999999999999999999886553
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.69 E-value=4.9e-18 Score=133.98 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=94.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCC------cccccc----------------------cee-------------
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDT------TYQATI----------------------GID------------- 45 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~------~~~~~~----------------------~~~------------- 45 (207)
....+|+|+|.+++|||||+++|++..+.+ ++.++. +.+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999988731 111220 000
Q ss_pred --------eeEEEEEEC-CeEEEEEEEecCChh-------------hhccccccccccCC-EEEEEEECCChHHHHHHHH
Q 028546 46 --------FLSKTMYLE-DRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSS-VAVIVYDVANRQSFLNTSR 102 (207)
Q Consensus 46 --------~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~ 102 (207)
.....+.+. .....+.||||||.. .+..+...|+.+++ ++++|.|++... ... .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~--~~~-~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--ANS-D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCG--GGC-H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCcc--chh-H
Confidence 000001110 012479999999953 34456666776665 555566666422 211 1
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH--HhC-CeEEEEecCCCCChHHHHHHHHH
Q 028546 103 WIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK--EFG-VMFIETSAKAGFNIKPLFRKIAA 168 (207)
Q Consensus 103 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~-~~~~~~s~~~~~~i~~~~~~l~~ 168 (207)
++..+........|+++|+||+|+.+.............. ..+ .+++++||+++.|++++++++.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2222333334468999999999997554322221111000 112 25788999999999999999987
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.6e-15 Score=118.95 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=58.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe---------------EEEEEEEecCChhhhc-
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR- 72 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 72 (207)
.++|+++|.+|+|||||+|+|.+..+.....+.++++.....+.+.+. ...+.+||+||..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 378999999999999999999988754444444454444444555442 1479999999976543
Q ss_pred ---cc---cccccccCCEEEEEEECCC
Q 028546 73 ---SL---IPSYIRDSSVAVIVYDVAN 93 (207)
Q Consensus 73 ---~~---~~~~~~~~d~~ilv~d~~~ 93 (207)
.+ ...+++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 12 2335789999999999985
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=4.9e-17 Score=128.35 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=69.9
Q ss_pred EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--H
Q 028546 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--E 135 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~ 135 (207)
+.+.||||||... .....+..+|++|+|+|....+....+... + ...|+++|+||+|+........ .
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence 5799999999432 233345889999999999765444332211 1 1368899999999854322111 1
Q ss_pred HHHHHHHH-------hCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 136 EGDGKAKE-------FGVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 136 ~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
........ ++.+++++|+++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11111111 25789999999999999999999998754
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=2.4e-16 Score=130.65 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=80.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CccccccceeeeEEE--------------------------------
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFD---TTYQATIGIDFLSKT-------------------------------- 50 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~-------------------------------- 50 (207)
....++|+|+|.+|+|||||+|+|++..+. ....++++.......
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 345689999999999999999999998863 222332211000000
Q ss_pred ----EEECCe-EEEEEEEecCChhh-----------hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC
Q 028546 51 ----MYLEDR-TVRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD 114 (207)
Q Consensus 51 ----~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~ 114 (207)
..+.+. ...+.||||||... +...+..++..+|++|+|+|+++.........++..+.. ..
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence 000000 02589999999764 344556678899999999999874334444555555432 25
Q ss_pred CeEEEEEeCCCCCCCCC
Q 028546 115 VIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 115 ~p~ivv~nK~D~~~~~~ 131 (207)
.|+++|+||+|+.+..+
T Consensus 219 ~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQ 235 (550)
T ss_dssp GGEEEEEECGGGSCHHH
T ss_pred CCEEEEEECCCccCHHH
Confidence 78999999999875433
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=4.2e-17 Score=120.79 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=92.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeee------------EEEEEEC-Ce------------------
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFL------------SKTMYLE-DR------------------ 56 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 56 (207)
+.++|+|+|.+|+|||||+++|....+...+.++...++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999977554333333222221 1111111 10
Q ss_pred -EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH
Q 028546 57 -TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE 135 (207)
Q Consensus 57 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 135 (207)
...+.++|++|.-... ..+-...+.++.++|......... .....+ ..|.++|+||+|+.+..+...+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence 1145555665521100 011123445667777532111111 001111 3678999999998655445566
Q ss_pred HHHHHHHHh--CCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 136 EGDGKAKEF--GVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 136 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
.....+..+ +++++++|+++|.|++++|++|.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 666666654 5789999999999999999999987643
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.62 E-value=6.5e-16 Score=133.73 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=84.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC------------CCCC----ccccccceeeeEEEEEE--------------CCeE
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD------------KFDT----TYQATIGIDFLSKTMYL--------------EDRT 57 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~------------~~~~----~~~~~~~~~~~~~~~~~--------------~~~~ 57 (207)
...+|+|+|+.++|||||+++|+.. .+.. +..+..++......+.+ ++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4579999999999999999999854 1110 11122222222222222 3446
Q ss_pred EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
+.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++....|..... .++|+++++||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 899999999999999999999999999999999998877777665554432 258999999999975
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.61 E-value=2.2e-14 Score=122.34 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=81.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC--------------CC----CCccccccceeeeEEEEEECC-----eEEEEEEEecC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD--------------KF----DTTYQATIGIDFLSKTMYLED-----RTVRLQLWDTA 66 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D~~ 66 (207)
-+|+|+|+.++|||||..+|+.. .+ ..+..+..++.-....+.+.+ ..+.++++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 58999999999999999999711 11 122334444444444454432 35789999999
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
|+.+|.......++-+|++|+|+|+..+-..++..-|.+.... ++|.++++||+|..
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence 9999999999999999999999999976555555555555444 58999999999964
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.59 E-value=4.7e-16 Score=131.09 Aligned_cols=112 Identities=15% Similarity=0.166 Sum_probs=79.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc--C------C------CC----CccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY--D------K------FD----TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~--~------~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (207)
.||+|+|+.++|||||..+|+. + . +. .+..++.++......+.+.+ +.++++||||+.+|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 4799999999999999999971 1 1 11 11112333333333333444 68999999999999
Q ss_pred ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 127 (207)
.......++-+|++|+|+|+..+-..++..-|.+... . ++|.++++||+|..
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~-~---~lp~i~~INKmDr~ 132 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK-M---GIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH-H---TCSCEECCEECCSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH-c---CCCeEEEEeccccc
Confidence 9999999999999999999997544444444444333 3 58889999999964
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.59 E-value=4.8e-16 Score=122.26 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=62.7
Q ss_pred EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028546 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG 137 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 137 (207)
+.+.++||+|.... ...+...+|++++|+|++.+.....+.. .+ ...|.++|+||+|+.+..... ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence 47899999995321 2334678999999999986543222211 11 135789999999985321110 011
Q ss_pred HHHHH----------HhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 138 DGKAK----------EFGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 138 ~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
..+.. .++.+++++|+++|.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11111 12467899999999999999999998764
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.59 E-value=1.6e-14 Score=113.91 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=57.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-------------------eEEEEEEEecCChhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQER 70 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 70 (207)
++|+++|.+|+|||||++++.+........+..+++.......+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999997653322233333333333333321 224799999999765
Q ss_pred hcc-------ccccccccCCEEEEEEECCC
Q 028546 71 FRS-------LIPSYIRDSSVAVIVYDVAN 93 (207)
Q Consensus 71 ~~~-------~~~~~~~~~d~~ilv~d~~~ 93 (207)
..+ .....++++|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 432 12235789999999999985
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6.4e-14 Score=110.51 Aligned_cols=153 Identities=13% Similarity=0.135 Sum_probs=101.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-------cccccccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRD 81 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~ 81 (207)
..+|+++|.|++|||||+|+|++........+.++.+.....+.+.+ .++.++|+||.-.-.. .....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 36899999999999999999999887777778899999888888888 5789999999543211 12334688
Q ss_pred CCEEEEEEECCChHHH-HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--------CCCCCHHHHHHHHHHhCCeEEEEe
Q 028546 82 SSVAVIVYDVANRQSF-LNTSRWIEEVRTERGGDVIIVLVGNKTDLVD--------KRQVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~s 152 (207)
+|++++|+|++++..- +.+...+..+.... ...|.++++||.|... ......++.......+.+..-++-
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~ 228 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA 228 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence 9999999999986432 22332222222112 3567889999999632 233455666655555554222222
Q ss_pred cCCCCChHHHHH
Q 028546 153 AKAGFNIKPLFR 164 (207)
Q Consensus 153 ~~~~~~i~~~~~ 164 (207)
-..+...+++.+
T Consensus 229 ~~~nv~eddl~d 240 (376)
T 4a9a_A 229 FRCDATVDDLID 240 (376)
T ss_dssp ECSCCCHHHHHH
T ss_pred ecccCCHHHHHH
Confidence 223334444443
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=6.1e-15 Score=125.15 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=97.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccc-------------------------------------------
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIG------------------------------------------- 43 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~------------------------------------------- 43 (207)
...+|+|+|..++|||||+|+|++..+ +......+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 457999999999999999999999876 222111110
Q ss_pred -------eeeeEEEEEECCeEEEEEEEecCChhh-------------hcccccccc-ccCCEEEEEEECCChHHHHHHHH
Q 028546 44 -------IDFLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVIVYDVANRQSFLNTSR 102 (207)
Q Consensus 44 -------~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~ 102 (207)
.+.....+...+. ..+.|+||||... +..+...|+ ..+|++++|+|++....-.....
T Consensus 130 g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0001111111221 2588999999543 222334444 57899999999986432222222
Q ss_pred HHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH--HhC-CeEEEEecCCCCChHHHHHHHHHH
Q 028546 103 WIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK--EFG-VMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 103 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~-~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
++..+. ....|+++|+||+|+.+.............. ..+ .+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 333332 3368999999999997655443221110000 012 257889999999999999999873
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.52 E-value=5.2e-15 Score=116.11 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=65.3
Q ss_pred EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--H
Q 028546 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--E 135 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~ 135 (207)
+.+.||||||...... .....+|++++|+|++....+..+.. ... ..|.++|+||+|+.+...... .
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM-----EVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH-----HHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh-----cccCEEEEECCCCCChHHHHHHHH
Confidence 5799999999654332 24589999999999976543222211 111 357899999999854322111 1
Q ss_pred HHHHHHHHh-------CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 136 EGDGKAKEF-------GVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
........+ ..+++++|+++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 112111121 457899999999999999999998764
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.51 E-value=6e-14 Score=106.00 Aligned_cols=111 Identities=16% Similarity=0.025 Sum_probs=68.6
Q ss_pred EEEEEEecCChhhhccccc------cccccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546 58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 128 (207)
+.+.||||||......... ..+.. +++|+++|+.. ...+.....+..... ...+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence 5799999999876543321 23455 89999998753 222222211111111 112578999999999865
Q ss_pred CCCC--------CHHHHH-H-----------------HHHHhC--CeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 129 KRQV--------SIEEGD-G-----------------KAKEFG--VMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 129 ~~~~--------~~~~~~-~-----------------~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
..+. ...... . .+..++ .+++++|++++.|+++++++|.+.+.
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 4321 000000 0 123333 47999999999999999999998765
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.46 E-value=1.1e-13 Score=108.28 Aligned_cols=103 Identities=11% Similarity=0.098 Sum_probs=63.7
Q ss_pred EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028546 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG 137 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 137 (207)
+.+.|+||+|..... ......+|.+++++|....+..+.+... +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 579999999964321 2234789999999998754332211111 11 134577789999754322211112
Q ss_pred HHHHHH----------hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546 138 DGKAKE----------FGVMFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 138 ~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
..+... ++.+++.+|++++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222221 2467899999999999999999998764
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=2.5e-13 Score=104.79 Aligned_cols=99 Identities=21% Similarity=0.176 Sum_probs=80.1
Q ss_pred hhhhccccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHhC
Q 028546 68 QERFRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGKAKEFG 145 (207)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 145 (207)
++++..+.+.++.++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.++.++. .+.........+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6677888888999999999999999886 88888899987765 268999999999997554222 334455566678
Q ss_pred CeEEEEecCCCCChHHHHHHHHHH
Q 028546 146 VMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 146 ~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
++++++||++|.|++++++.+...
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHhhccCc
Confidence 999999999999999999887643
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.38 E-value=1.1e-11 Score=98.30 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=64.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCe---------------EEEEEEEecCChhhh-
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF- 71 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~- 71 (207)
..++.++|++|+|||||+|+|.+... .....++.+++.....+.+.+. ...+.+||+||....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 47899999999999999999999877 5566677777777777777651 136899999995432
Q ss_pred ------ccccccccccCCEEEEEEECCC
Q 028546 72 ------RSLIPSYIRDSSVAVIVYDVAN 93 (207)
Q Consensus 72 ------~~~~~~~~~~~d~~ilv~d~~~ 93 (207)
.......++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233445689999999999863
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=4.5e-13 Score=106.11 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=53.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe---------------EEEEEEEecCChhhhc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR 72 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 72 (207)
..++|+++|.+|+|||||+++|.+..+.....++.+++.....+.+.+. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3489999999999999999999998776556667776666666665542 1259999999977644
Q ss_pred c-------ccccccccCCEEEEEEECCCh
Q 028546 73 S-------LIPSYIRDSSVAVIVYDVANR 94 (207)
Q Consensus 73 ~-------~~~~~~~~~d~~ilv~d~~~~ 94 (207)
+ .+..+++++|++++|+|+++.
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC---
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 3 345678999999999999853
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.37 E-value=6e-13 Score=95.72 Aligned_cols=106 Identities=6% Similarity=-0.090 Sum_probs=68.9
Q ss_pred CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHH---HHHH-Hhc-CCCCeEEEEEeCC-CCCCCCCCCHHHHHH
Q 028546 66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWI---EEVR-TER-GGDVIIVLVGNKT-DLVDKRQVSIEEGDG 139 (207)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~i~-~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 139 (207)
+|+..++..|..|+.++|++|||+|.+|.+.++ .+..+ ..+. ... ..++|++|++||. |+. ......++..
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence 478899999999999999999999999865433 33333 2222 222 2578999999985 663 3344444433
Q ss_pred HHHH----hCCeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546 140 KAKE----FGVMFIETSAKAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 140 ~~~~----~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~ 174 (207)
.... ....+..|||.+|+|+.+.++||.+.+...+
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 3221 2346889999999999999999998876443
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=93.25 Aligned_cols=108 Identities=6% Similarity=-0.070 Sum_probs=73.5
Q ss_pred cCChhhhccccccccccCCEEEEEEECCChHHHH---HHHHHHHHHHHh-cCCCCeEEEEEeC-CCCCCCCCCCHHHHHH
Q 028546 65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFL---NTSRWIEEVRTE-RGGDVIIVLVGNK-TDLVDKRQVSIEEGDG 139 (207)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~---~~~~~~~~i~~~-~~~~~p~ivv~nK-~D~~~~~~~~~~~~~~ 139 (207)
.+|+...+..|..|+.++|++|||+|.+|.+.++ ++.++...+... ...++|++|++|| .|+.. .....++..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 4578889999999999999999999999876443 222222223222 2347999999996 57743 344444433
Q ss_pred HHHH----hCCeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546 140 KAKE----FGVMFIETSAKAGFNIKPLFRKIAAALPGME 174 (207)
Q Consensus 140 ~~~~----~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~ 174 (207)
...- ....+..|||.+|+|+.+.++||.+.+...+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 2221 2345889999999999999999999987544
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=3.1e-10 Score=89.76 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=73.6
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH----HHHHH
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG----DGKAK 142 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~ 142 (207)
..++|...+..+.+.++++++|+|++++. ..|...+.+... +.|+++|+||+|+.+.. ...+.. ...+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35788999999999999999999999753 345555555443 68999999999996543 222333 33355
Q ss_pred HhCC---eEEEEecCCCCChHHHHHHHHHHc
Q 028546 143 EFGV---MFIETSAKAGFNIKPLFRKIAAAL 170 (207)
Q Consensus 143 ~~~~---~~~~~s~~~~~~i~~~~~~l~~~~ 170 (207)
..++ +++.+||++|.|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 799999999999999999998765
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=4.4e-10 Score=89.86 Aligned_cols=139 Identities=14% Similarity=0.210 Sum_probs=70.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcc----ccccceeeeEEEEEECCeEEEEEEEecCChhhhc-------------
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDTTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------------- 72 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------------- 72 (207)
++++|+|++|+|||||++.+.+..+.... .+..........+...+....++++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 57999999999999999999987543211 1111222111122222323478999999843210
Q ss_pred -ccc----cc---------ccccC--CE-EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--
Q 028546 73 -SLI----PS---------YIRDS--SV-AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-- 133 (207)
Q Consensus 73 -~~~----~~---------~~~~~--d~-~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-- 133 (207)
..+ .. .+..+ |+ ++|+.|...+-+-.. ... +.... .++|+|+|+||+|...+.++.
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-iei---lk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVT---MKKLD-SKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHH---HHHTC-SCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHH---HHHHh-hCCCEEEEEcchhccchHHHHHH
Confidence 011 11 11222 33 556666653322222 122 22222 478999999999986554421
Q ss_pred HHHHHHHHHHhCCeEEEEec
Q 028546 134 IEEGDGKAKEFGVMFIETSA 153 (207)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~s~ 153 (207)
...+.......++.+|++|.
T Consensus 198 ~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHcCCcEEecCC
Confidence 12222223345677777774
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=2.5e-11 Score=96.10 Aligned_cols=141 Identities=19% Similarity=0.234 Sum_probs=83.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC------CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------c
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD------KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------I 75 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~ 75 (207)
..+|+++|.+|+|||||+|++++. .......+.++.+. ..+.+.. .+.++||||....... .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999976 33333344444433 2333443 3789999995432211 1
Q ss_pred cccc---ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546 76 PSYI---RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 76 ~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (207)
...+ ...+.++++++....-.+..+.. +......+.|+++++||.|.....+... ....+.+..+..+.+.+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~~-~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLEK-ADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGGG-HHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHHH-HHHHHHHhcCCccCCCC
Confidence 1112 67899999999852110111110 1112234689999999999876554432 33445556666666666
Q ss_pred cCCCCCh
Q 028546 153 AKAGFNI 159 (207)
Q Consensus 153 ~~~~~~i 159 (207)
+.+..++
T Consensus 312 ~~~~~~~ 318 (369)
T 3ec1_A 312 KRYAAEF 318 (369)
T ss_dssp GGGTTTC
T ss_pred chhhhhc
Confidence 6554443
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.00 E-value=1.8e-10 Score=94.21 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=85.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh------cCCCC----Cccccc-----------cceeeeEEEEE-------------E
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFM------YDKFD----TTYQAT-----------IGIDFLSKTMY-------------L 53 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~-------------~ 53 (207)
+...|+++|++|+||||++++|. +.++. +.+.+. .++++...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999997 33320 000110 01221111000 0
Q ss_pred CCeEEEEEEEecCChhhhcc-ccc---cc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEEeCCCC
Q 028546 54 EDRTVRLQLWDTAGQERFRS-LIP---SY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVII-VLVGNKTDL 126 (207)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~D~ 126 (207)
....+.+.|+||||...... .+. .+ +..+|.+++|+|+........ ....+... .|+ ++|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~~----~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKDK----VDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHHH----HCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHhh----cCceEEEEeCCcc
Confidence 00235799999999653211 111 11 227899999999986533212 22223222 454 899999997
Q ss_pred CCCCCCCHHHHHHHHHHhCCeE------------------EEEecCCCCC-hHHHHHHHHHH
Q 028546 127 VDKRQVSIEEGDGKAKEFGVMF------------------IETSAKAGFN-IKPLFRKIAAA 169 (207)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-i~~~~~~l~~~ 169 (207)
..... .........+.++ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 53221 1222333444443 3468889999 99999999876
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.98 E-value=6.4e-10 Score=84.31 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=71.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc--------cc-ccceeeeEEEEEECCeEEEEEEEecCChhhhcc------
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY--------QA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------ 73 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------ 73 (207)
.++++++|+.|+|||||++.+.+...+... .+ ..............+....++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 589999999999999999999865432110 00 000011111111112223689999998432100
Q ss_pred cc----------------------ccccccCCEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546 74 LI----------------------PSYIRDSSVAVIVYDVAN-RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130 (207)
Q Consensus 74 ~~----------------------~~~~~~~d~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 130 (207)
.. ...+..+++.++++|... +-.-.. ...+..+. .. +++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence 00 111235788999999752 211111 22333333 22 8899999999986544
Q ss_pred CCC--HHHHHHHHHHhCCeEEE
Q 028546 131 QVS--IEEGDGKAKEFGVMFIE 150 (207)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~~ 150 (207)
+.. ...+.......++.+|+
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 322 22334445556777664
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.93 E-value=6.1e-10 Score=88.13 Aligned_cols=98 Identities=22% Similarity=0.282 Sum_probs=72.0
Q ss_pred ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH----HHHH
Q 028546 67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD----GKAK 142 (207)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~ 142 (207)
.+++|++.+..++..++++++|+|++++.+ .|...+..... +.|+++|+||+|+.+.. ...+... ....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 477899999999999999999999998653 23333433333 68999999999997543 2223333 2345
Q ss_pred HhCC---eEEEEecCCCCChHHHHHHHHHHcC
Q 028546 143 EFGV---MFIETSAKAGFNIKPLFRKIAAALP 171 (207)
Q Consensus 143 ~~~~---~~~~~s~~~~~~i~~~~~~l~~~~~ 171 (207)
..++ +++.+||++|.|++++++.+.+...
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5566 7899999999999999999987653
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.89 E-value=4.4e-08 Score=78.26 Aligned_cols=163 Identities=14% Similarity=0.149 Sum_probs=87.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeee-EEEEEECCeEEEEEEEecCChhhhccccccc-----ccc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFL-SKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IRD 81 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~~ 81 (207)
...++++|++|+|||||++.+.+...+..- ....+.+.. ...+.-......++++|++|..........+ +..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 357999999999999999999985432111 111111100 0111111111158999999854321111111 334
Q ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC--C-----CCCCCHHHH----HHHH----HHhC-
Q 028546 82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV--D-----KRQVSIEEG----DGKA----KEFG- 145 (207)
Q Consensus 82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~--~-----~~~~~~~~~----~~~~----~~~~- 145 (207)
.+.+++ ++...... ..+ .+...+.. . +.|+++|.||.|+. + -........ ..+. ...+
T Consensus 149 ~~~~~~-lS~G~~~k-qrv-~la~aL~~-~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATRFKK-NDI-DIAKAISM-M--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSCCCH-HHH-HHHHHHHH-T--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCCccH-HHH-HHHHHHHh-c--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555 77653111 111 11122222 1 47999999999963 1 111122222 2222 1222
Q ss_pred --CeEEEEec--CCCCChHHHHHHHHHHcCCCccCc
Q 028546 146 --VMFIETSA--KAGFNIKPLFRKIAAALPGMETLS 177 (207)
Q Consensus 146 --~~~~~~s~--~~~~~i~~~~~~l~~~~~~~~~~~ 177 (207)
..++.+|+ .++.|++++.+.+.+.+.+.....
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 36788999 566679999999999987765443
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=8.8e-11 Score=92.88 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=75.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC------C-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc------
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDKF------D-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI------ 75 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------ 75 (207)
..+|+++|.+|+|||||+|++++... . ....+.++. ....+.+.. .+.++||||........
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL--DLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec--ceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHH
Confidence 36899999999999999999987531 1 122233332 223333443 27899999964322111
Q ss_pred --ccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546 76 --PSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET 151 (207)
Q Consensus 76 --~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (207)
..+ ....+.++++++....-.+..+.. +........|+++++||.|.....+. ......+.+..+..+.+.
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSS
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCC
Confidence 111 356788999998842110111100 11122346899999999998755443 223334444556544444
Q ss_pred ec
Q 028546 152 SA 153 (207)
Q Consensus 152 s~ 153 (207)
++
T Consensus 310 ~~ 311 (368)
T 3h2y_A 310 TP 311 (368)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=1.3e-09 Score=83.19 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=68.9
Q ss_pred EEecCChh-hhccccccccccCCEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028546 62 LWDTAGQE-RFRSLIPSYIRDSSVAVIVYDVANRQSFLN--TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD 138 (207)
Q Consensus 62 i~D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 138 (207)
+-..||+. .....+...+.++|++++|+|+.++.+... +.+++ .++|.++|+||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 34568865 445566777899999999999998766542 33332 3689999999999965321 11222
Q ss_pred HHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546 139 GKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPG 172 (207)
Q Consensus 139 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~ 172 (207)
.+....+++++.+|+.++.|++++++.+.+.+.+
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 2333457899999999999999999988887653
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.57 E-value=5.9e-08 Score=73.92 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=35.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (207)
..++++++|.+|+|||||+|++.+... .....+..+.+.. .+.... .+.++||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 458999999999999999999998764 2333344443332 233333 58899999954
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.53 E-value=3.6e-07 Score=73.47 Aligned_cols=86 Identities=17% Similarity=0.084 Sum_probs=51.4
Q ss_pred EEEEEEecCChhhhccc----cc--cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRSL----IP--SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~----~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
+.+.|+||+|....... .. .....+|.++||+|+........ ....+... -.+..||+||+|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCccc--
Confidence 67999999994332111 11 11336899999999986433222 22333332 2346799999997322
Q ss_pred CCHHHHHHHHHHhCCeEEEEec
Q 028546 132 VSIEEGDGKAKEFGVMFIETSA 153 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s~ 153 (207)
...+.......+.++.+++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 23344455567888877775
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.50 E-value=9e-08 Score=77.07 Aligned_cols=83 Identities=16% Similarity=0.046 Sum_probs=47.3
Q ss_pred EEEEEEecCChhhhcc----cc--ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC-e-EEEEEeCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRS----LI--PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDV-I-IVLVGNKTDLVDK 129 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ivv~nK~D~~~~ 129 (207)
+.+.|+||||...... .. ...+..+|.++||+|+.... ........+.. .. | ..+|+||+|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFKE----AVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHHT----TSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHhh----cccCCeEEEEeCCCCccc
Confidence 5789999999543211 11 11123689999999997543 22222222221 24 5 8999999997321
Q ss_pred CCCCHHHHHHHHHHhCCeEEEE
Q 028546 130 RQVSIEEGDGKAKEFGVMFIET 151 (207)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~ 151 (207)
...+.......+.++.++
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 122334555666666554
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.48 E-value=5.1e-08 Score=73.50 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=35.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (207)
++++++|.+|+|||||+|++.+..... ...+..+... ..+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence 599999999999999999999877632 2223332222 2223332 689999999653
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.40 E-value=4.8e-08 Score=73.65 Aligned_cols=92 Identities=16% Similarity=0.055 Sum_probs=61.1
Q ss_pred CChhh-hccccccccccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 028546 66 AGQER-FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE 143 (207)
Q Consensus 66 ~G~~~-~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 143 (207)
||+.. ....+...+.++|++++|+|+.++.+.... ..++ ++|.++|+||+|+.+... .+........
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFS---------RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCT---------TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhc---------CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 55432 233456677899999999999987655431 1111 589999999999975421 1222233344
Q ss_pred hCCeEEEEecCCCCChHHHHHHHHHH
Q 028546 144 FGVMFIETSAKAGFNIKPLFRKIAAA 169 (207)
Q Consensus 144 ~~~~~~~~s~~~~~~i~~~~~~l~~~ 169 (207)
.++++ .+|+.++.|++++++.+...
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 57888 99999999999988877654
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.30 E-value=5.2e-07 Score=75.13 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=38.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccc--cccceeeeEEEEEE-CCeEEEEEEEecCChhh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQ--ATIGIDFLSKTMYL-EDRTVRLQLWDTAGQER 70 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~ 70 (207)
+.+.|+|+|.+++|||||+|+|++....- ... ...+..+..+.... ......+.++||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 45889999999999999999999876421 111 11111111111111 11224789999999654
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.28 E-value=2.1e-07 Score=74.73 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=54.4
Q ss_pred EEEEEEecCChhh--hcc----cccc--ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546 58 VRLQLWDTAGQER--FRS----LIPS--YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129 (207)
Q Consensus 58 ~~~~i~D~~G~~~--~~~----~~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 129 (207)
+.+.++||||... ... .... .....+.++||+|+........ ....+.... .+..||+||.|..
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD~~-- 251 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMDGT-- 251 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGGGC--
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEeccccc--
Confidence 5788999999533 111 1111 1225699999999986433222 223333332 4578999999963
Q ss_pred CCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159 (207)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 159 (207)
.....+.......+.|+.+++. |+++
T Consensus 252 --a~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 252 --AKGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp --SCHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred --ccchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 2234455556667899888775 5543
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.27 E-value=3.3e-07 Score=70.46 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=60.6
Q ss_pred ccccccccccCCEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHhCCeE
Q 028546 72 RSLIPSYIRDSSVAVIVYDVANRQS-FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAKEFGVMF 148 (207)
Q Consensus 72 ~~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 148 (207)
..+.+..+.++|.+++|+|+.++.. ...+.+++..... .++|.++|+||+|+.++.+. ..+.........++++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3344556889999999999987543 3334444433322 25889999999999765321 1223333444568899
Q ss_pred EEEecCCCCChHHHHHH
Q 028546 149 IETSAKAGFNIKPLFRK 165 (207)
Q Consensus 149 ~~~s~~~~~~i~~~~~~ 165 (207)
+.+|+.++.|+++++..
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999887766544
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.21 E-value=4.2e-06 Score=65.60 Aligned_cols=85 Identities=22% Similarity=0.260 Sum_probs=56.4
Q ss_pred ccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHhCCeEEEEecCC
Q 028546 78 YIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGKAKEFGVMFIETSAKA 155 (207)
Q Consensus 78 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~ 155 (207)
.+.++|.+++|.+.. |. +...+.+++...... ++|+++|+||+|+.++.... ...........+++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 468999999887764 43 333455554444333 57889999999997653210 1112222335688999999999
Q ss_pred CCChHHHHHHH
Q 028546 156 GFNIKPLFRKI 166 (207)
Q Consensus 156 ~~~i~~~~~~l 166 (207)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999887754
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.18 E-value=2.8e-06 Score=65.10 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=54.9
Q ss_pred EEEEEEecCChhh--hcc-ccc-----cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 028546 58 VRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVD 128 (207)
Q Consensus 58 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~ 128 (207)
+.+.++||||... ... ... ..+..+|.+++|+|+.... ........+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5799999999655 211 111 1245789999999997432 22222233332 244 788999999632
Q ss_pred CCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
....+.......+.++.+++ .|++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 23344556677788887776 455554
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.17 E-value=5.2e-06 Score=69.78 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKFD 35 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~~ 35 (207)
.++|+|+.|||||||++.+.+-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999987533
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.98 E-value=2.2e-05 Score=60.90 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=52.5
Q ss_pred EEEEEecCChhhhcccc----cc--ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028546 59 RLQLWDTAGQERFRSLI----PS--YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV 132 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~ 132 (207)
.+.++|++|........ .. ..-..|-.+++.|+.... .+......+....+ ..++++||.|.. .
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~~-a--- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDAD-A--- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGGC-S---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCCc-c---
Confidence 46779999964322211 10 122478899999987542 33333444443322 347889999952 1
Q ss_pred CHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546 133 SIEEGDGKAKEFGVMFIETSAKAGFNIK 160 (207)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 160 (207)
....+.......+.++.+++ +|++++
T Consensus 283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 283 RGGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 12334556677788888877 555543
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.88 E-value=1.4e-05 Score=64.42 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.=|.|+|++++|||||+|+|++.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 45788899999999999999863
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.85 E-value=9.3e-07 Score=72.11 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=57.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh--hhcccc--------c
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--RFRSLI--------P 76 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~~--------~ 76 (207)
..++.|+++|.+||||||+.++|....... ..++.............+......+||..|.. +.+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999986432100 00111100000000001111234678888873 233333 4
Q ss_pred cccccCCEEEEEEECCChHHHHHHHHHHHHHHHh
Q 028546 77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE 110 (207)
Q Consensus 77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~ 110 (207)
.++...++.++|+|.++. +.+....|+..+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 556677888999999985 455566666666554
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.50 E-value=5.7e-05 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988754
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.35 E-value=0.0001 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
--++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999999764
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.34 E-value=0.00076 Score=54.32 Aligned_cols=83 Identities=14% Similarity=0.011 Sum_probs=45.7
Q ss_pred EEEEEEecCChhhhccc-cc-----cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRSL-IP-----SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKR 130 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~ 130 (207)
+.+.|+||||....... .. ..+..++.+++|+|+...... ......+... .+ ..+|+||.|....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~- 255 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDAR- 255 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSC-
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCcc-
Confidence 57999999995433211 11 123478999999999754322 2222333322 33 3578999996322
Q ss_pred CCCHHHHHHHHHHhCCeEEEE
Q 028546 131 QVSIEEGDGKAKEFGVMFIET 151 (207)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ 151 (207)
. ..+.......+.++.++
T Consensus 256 ~---g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G---GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C---THHHHHHHHHCCCEEEE
T ss_pred H---HHHHHHHHHHCCCeEEE
Confidence 1 12334455556654433
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.32 E-value=0.00011 Score=52.72 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
-.++|+|+.|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.29 E-value=0.00018 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.|+++|++|||||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999775
No 241
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.27 E-value=0.00015 Score=52.30 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=21.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
..+...|+++|+.|||||||++.+.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999998765
No 242
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.26 E-value=0.00014 Score=50.86 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.24 E-value=0.00021 Score=51.23 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=22.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 5 SPLAKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 5 ~~~~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
+.++.--|+|+|++|+|||||++.|.+.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3444557889999999999999999854
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.23 E-value=0.00024 Score=50.28 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
++..++...|+++|++||||||+.+.|-..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345556678999999999999999987543
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.22 E-value=0.00017 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998765
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.20 E-value=0.00018 Score=51.07 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
++++|+.|||||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999998754
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.17 E-value=0.0002 Score=52.28 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
--++|+|+.|||||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999987653
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.15 E-value=0.00021 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999987653
No 249
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.13 E-value=0.00029 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-..|+++|++|||||||++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999987654
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.12 E-value=0.00023 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.647 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-.++|+|+.|||||||++.+.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999988743
No 251
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.12 E-value=0.00035 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
++...|+++|++||||||+...|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 344679999999999999999875
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.09 E-value=0.00031 Score=49.93 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
|+|+||+||||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 253
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.08 E-value=0.00031 Score=51.40 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=19.6
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHh
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
|..+..+ ..|+|+|++||||||+.+.|.
T Consensus 1 m~~~~~~--~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 1 MGASARL--LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp ------C--CEEEEEECTTSSHHHHHHHHH
T ss_pred CCccccC--cEEEEECCCCCCHHHHHHHHH
Confidence 4444433 679999999999999999875
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.07 E-value=0.00031 Score=51.89 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999888764
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.06 E-value=0.00039 Score=50.17 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
+...|+|+|++|||||||++.+.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999987653
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.05 E-value=0.00031 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
--|+++|++|||||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358889999999999999998653
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.04 E-value=0.00037 Score=48.34 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=18.4
Q ss_pred eeEEEEcCCCCCHHHHHHHH
Q 028546 10 YKLVFLGDQSVGKTSIITRF 29 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l 29 (207)
+-|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 258
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.02 E-value=0.00058 Score=47.67 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
-..|+++|++||||||+++.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998753
No 259
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.02 E-value=0.00038 Score=50.37 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999884
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.02 E-value=0.00036 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999998765
No 261
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.00 E-value=0.00036 Score=51.13 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999888764
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.00 E-value=0.00039 Score=48.37 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
..|+++|++|||||||.+.|-+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 263
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.99 E-value=0.00042 Score=50.20 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
++|+|+|++||||||+...|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999884
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.99 E-value=0.00045 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
-.|+++|++|||||||++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998854
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.98 E-value=0.00045 Score=48.77 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
..|+|.|++||||||+.+.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999874
No 266
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.98 E-value=0.0004 Score=54.39 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
.++++|++|+|||||+|.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998654
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.98 E-value=0.00044 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.98 E-value=0.00042 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999998653
No 269
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.97 E-value=0.00052 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 270
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.97 E-value=0.00043 Score=49.04 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
-++++|++|||||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.97 E-value=0.00045 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988764
No 272
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.95 E-value=0.00045 Score=47.93 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998853
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.95 E-value=0.00046 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988764
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.94 E-value=0.00047 Score=51.73 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 275
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.94 E-value=0.00047 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999988764
No 276
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.94 E-value=0.00068 Score=48.49 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHh
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
....+.|+|+|++||||||+.+.|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3445789999999999999999875
No 277
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.93 E-value=0.0007 Score=47.80 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
...|++.|++||||||+...|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998875
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.92 E-value=0.00063 Score=47.53 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
.-|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.92 E-value=0.00059 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~ 30 (207)
+...|++.|.+||||||+...|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999998774
No 280
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.92 E-value=0.00052 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988764
No 281
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.91 E-value=0.00054 Score=50.77 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
..|+|+|++|||||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.91 E-value=0.00051 Score=51.39 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988764
No 283
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00068 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
+...|+|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999998854
No 284
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.90 E-value=0.00054 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999988764
No 285
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.90 E-value=0.00055 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988764
No 286
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.89 E-value=0.00059 Score=49.18 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.89 E-value=0.00075 Score=50.75 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|||||||++.+.+-..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999887643
No 288
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.89 E-value=0.00055 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988764
No 289
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.89 E-value=0.00055 Score=50.92 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 290
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.89 E-value=0.00059 Score=49.30 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
+.|+++|+|||||+|....|.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998775
No 291
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.88 E-value=0.00057 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988764
No 292
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.88 E-value=0.00058 Score=51.06 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 293
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00071 Score=48.26 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=22.0
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
|..++ .+...|+|+|++||||||+.+.|...
T Consensus 1 ~~~~~-~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEA-KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ------CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcc-cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 33444 34578999999999999999988654
No 294
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.86 E-value=0.00061 Score=50.76 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999886
No 295
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.85 E-value=0.00055 Score=51.35 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
=.++|+|+.|||||||++.+.+-
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999988753
No 296
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.85 E-value=0.0006 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999988753
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.84 E-value=0.00062 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999988753
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.83 E-value=0.00062 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
=.++|+|++|+|||||++.+.+-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 46899999999999999988754
No 299
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.83 E-value=0.0008 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|++|+|||||++.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987654
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.82 E-value=0.00047 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++++|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998875
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.82 E-value=0.00068 Score=51.02 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999886
No 302
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.82 E-value=0.00066 Score=51.19 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988764
No 303
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.82 E-value=0.00085 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
...|+++|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999885
No 304
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.81 E-value=0.00074 Score=48.19 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998754
No 305
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.81 E-value=0.0007 Score=51.29 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988764
No 306
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.81 E-value=0.00069 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
.++++|+.|||||||++.+.+-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999887643
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.81 E-value=0.00082 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999998853
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.80 E-value=0.0007 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.80 E-value=0.00082 Score=48.92 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
..|+++|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998753
No 310
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.80 E-value=0.00083 Score=48.03 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
-.|+++|++||||||+...|.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999875
No 311
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.79 E-value=0.00071 Score=48.97 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999874
No 312
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.78 E-value=0.00074 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988754
No 313
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.78 E-value=0.00075 Score=49.78 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999999887
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.78 E-value=0.00091 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~ 30 (207)
+.+.|+++|++||||||+...|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.78 E-value=0.0008 Score=47.51 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998753
No 316
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.77 E-value=0.00093 Score=49.48 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
.+..-|+|+|+.|||||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998865
No 317
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.77 E-value=0.00077 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
+.|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998865
No 318
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.77 E-value=0.0006 Score=47.87 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.++++|++|+|||||+..+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988654
No 319
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.76 E-value=0.00024 Score=54.56 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-.++++|++|+|||||+|.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHhccccc
Confidence 4689999999999999999987643
No 320
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.74 E-value=0.00083 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.-++++|+.|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35788999999999999999864
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.73 E-value=0.00085 Score=48.03 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
..-|+++|++|||||||.+.+.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999987543
No 322
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.71 E-value=0.00051 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=14.7
Q ss_pred eEEEEcCCCCCHHHHHHHHh-cC
Q 028546 11 KLVFLGDQSVGKTSIITRFM-YD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~-~~ 32 (207)
-++++|+.|||||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999998 54
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.71 E-value=0.0011 Score=48.22 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
.+.|+|+|++||||||+...|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999998874
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.70 E-value=0.0016 Score=46.54 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
...|+|.|++||||||+...|.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999998875
No 325
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.70 E-value=0.00077 Score=49.04 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998743
No 326
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.70 E-value=0.00089 Score=51.29 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
--++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999998
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.69 E-value=0.0013 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhc
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
....-|+++|++|||||||...|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999863
No 328
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.69 E-value=0.0011 Score=45.86 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
++|++.|.+||||||+.+.|-.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998753
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.69 E-value=0.0011 Score=47.57 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998865
No 330
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.0013 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988865
No 331
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.67 E-value=0.00091 Score=51.50 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.+..-|+|+|++|||||||++.+.+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34577899999999999999988754
No 332
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.65 E-value=0.0013 Score=46.91 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
...|++.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999988654
No 333
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.63 E-value=0.0013 Score=48.87 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=20.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHh
Q 028546 4 VSPLAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 4 ~~~~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
++..+.+.|+|.|++||||||+.+.|.
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHH
Confidence 344456789999999999999998774
No 334
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.63 E-value=0.0012 Score=48.17 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
+.|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999874
No 335
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.63 E-value=0.0012 Score=46.39 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
..|+++|++||||||+...|-
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999884
No 336
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.62 E-value=0.0047 Score=41.62 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
..|++.|++|+|||++...+-..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 56999999999999999877554
No 337
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.61 E-value=0.0012 Score=46.10 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
+|+++|++||||||+...|-
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999998874
No 338
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.60 E-value=0.0011 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988764
No 339
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.60 E-value=0.0042 Score=50.02 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=17.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
.=|.|+|+.++|||+|+|.++
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 345588999999999999665
No 340
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.59 E-value=0.00082 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++|+|+.|||||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999887653
No 341
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.59 E-value=0.0011 Score=52.06 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++|+|+.|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998753
No 342
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.59 E-value=0.0018 Score=46.44 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
...|+|+|++|||||||.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999988754
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.57 E-value=0.0017 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998853
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.57 E-value=0.001 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.-+++|+|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988765
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.56 E-value=0.0015 Score=46.30 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
...|+++|++||||||+...|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998874
No 346
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.55 E-value=0.0013 Score=47.73 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
..|+|+|++||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999874
No 347
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.54 E-value=0.0022 Score=46.64 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=18.6
Q ss_pred CCceeE-EEEcCCCCCHHHHHHHHh
Q 028546 7 LAKYKL-VFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 7 ~~~~~i-~v~G~~~sGKStli~~l~ 30 (207)
.++.|| +|+|+|||||+|....|.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 445565 457999999999988775
No 348
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.52 E-value=0.0015 Score=46.07 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.51 E-value=0.00096 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=15.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
...|++.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999875
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.0024 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
+...|+++|.+||||||+...+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998753
No 351
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.49 E-value=0.0017 Score=46.06 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
-|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 352
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.00068 Score=47.48 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++|+|+.|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988765
No 353
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.49 E-value=0.0014 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++|+|+.|||||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988764
No 354
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.48 E-value=0.0016 Score=51.19 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|||||||++.+.+-..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 368999999999999998887643
No 355
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.46 E-value=0.001 Score=45.41 Aligned_cols=22 Identities=14% Similarity=0.445 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++++|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
No 356
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.46 E-value=0.0015 Score=48.59 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
....|+++|++||||||+...+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998753
No 357
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.44 E-value=0.0017 Score=47.09 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
+.|+|+|++||||||+...|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999998874
No 358
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.44 E-value=0.0015 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
=.++|+|+.|||||||++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998753
No 359
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.44 E-value=0.0015 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-.++|+|+.|||||||++.+.+-.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 378999999999999999998753
No 360
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.43 E-value=0.002 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|+|||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 368999999999999999887653
No 361
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.42 E-value=0.002 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
.+.+||+++|.+|||||||+.++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 446999999999999999998763
No 362
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.42 E-value=0.0022 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|+|||||++.+.+-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 368999999999999999887643
No 363
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.41 E-value=0.0018 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999988654
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.41 E-value=0.0022 Score=47.71 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
...|+|+|++||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 365
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.41 E-value=0.0016 Score=52.21 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++|+|+.|||||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999864
No 366
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.40 E-value=0.0021 Score=47.30 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~ 30 (207)
+.+.|++.|++||||||+.+.+-
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999875
No 367
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.0019 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999988764
No 368
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.39 E-value=0.0017 Score=48.95 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998763
No 369
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.39 E-value=0.0019 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|+|||||++.+.+-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 368999999999999999887643
No 370
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.38 E-value=0.0024 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
.+.|+|.|.+||||||+.+.|-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998854
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.38 E-value=0.0021 Score=44.60 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
..|++.|.+||||||+...|-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998874
No 372
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.38 E-value=0.0019 Score=48.08 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
-|+|+|++|||||||...|.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999874
No 373
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0029 Score=45.28 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
...-|+|+|++|||||||++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998753
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.37 E-value=0.00072 Score=48.71 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.37 E-value=0.0028 Score=48.25 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
.+..-|+|+|++|||||||.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 455789999999999999998764
No 376
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.36 E-value=0.0025 Score=46.70 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
..|+|+|.+||||||+...|.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998874
No 377
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.36 E-value=0.0023 Score=44.66 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.-+.++|++|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35788999999999999998753
No 378
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.36 E-value=0.0021 Score=45.65 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
..|++.|++||||||+...|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988753
No 379
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.36 E-value=0.002 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|+|||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 368999999999999999887643
No 380
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.36 E-value=0.002 Score=48.13 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
..|+++|.+||||||+...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998764
No 381
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.35 E-value=0.0028 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
...+-|.|+|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345779999999999999998874
No 382
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.35 E-value=0.0021 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999987654
No 383
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.34 E-value=0.0021 Score=45.09 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999864
No 384
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.32 E-value=0.0022 Score=45.06 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
..|+++|.+||||||+...|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 359999999999999998774
No 385
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.31 E-value=0.0021 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 386
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.30 E-value=0.0027 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
..-|+|+|+.|||||||++.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 387
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.29 E-value=0.0026 Score=44.44 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.+++.|++|+|||+|+..+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 388
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.29 E-value=0.0021 Score=52.88 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-.++|+|+.|||||||++.+.+--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998754
No 389
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.29 E-value=0.0021 Score=49.23 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=46.5
Q ss_pred EEEEEecCChhhhccc------------cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 59 RLQLWDTAGQERFRSL------------IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
.+.++|++|....... -.......+.++++.|+....... ..+..+....+ ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~~---~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAVG---LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHHC---CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHcC---CcEEEEECCcc
Confidence 4668899995321110 011234578889999987543322 22333333322 24788999985
Q ss_pred CCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546 127 VDKRQVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (207)
. .+. ..+.......+.++.++.
T Consensus 260 ~-a~g---g~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 T-AKG---GVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp S-CCC---TTHHHHHHHHCCCEEEEE
T ss_pred c-ccc---cHHHHHHHHHCCCeEEEe
Confidence 3 221 223445566788776665
No 390
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.27 E-value=0.0023 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++++|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999998744
No 391
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.27 E-value=0.0032 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
+-.-|+|.|+.|||||||++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467899999999999999988764
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.27 E-value=0.0032 Score=44.02 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
-..|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 393
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.27 E-value=0.0028 Score=43.23 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028546 12 LVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~ 30 (207)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999875
No 394
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.24 E-value=0.0017 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
-++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999988764
No 395
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.24 E-value=0.0017 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028546 12 LVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~ 33 (207)
++|+|+.|||||||++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 5677999999999999999653
No 396
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.24 E-value=0.0024 Score=48.93 Aligned_cols=84 Identities=17% Similarity=0.016 Sum_probs=44.7
Q ss_pred EEEEEecCChhhhccc------------cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546 59 RLQLWDTAGQERFRSL------------IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126 (207)
Q Consensus 59 ~~~i~D~~G~~~~~~~------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 126 (207)
...++|+.|....... -..+....+-++++.|++.. .+... ....+....+ ..+++++|.|.
T Consensus 185 d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsg--lD~~~-~~~~~~~~~g---~t~iiiThlD~ 258 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTG--LNMLP-QAREFNEVVG---ITGLILTKLDG 258 (302)
T ss_dssp SEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGG--GGGHH-HHHHHHHHTC---CCEEEEECCSS
T ss_pred cchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCC--cCHHH-HHHHHHHhcC---CCEEEEeCCCC
Confidence 3567899985432110 01123456777889996532 22221 2233333222 24677899874
Q ss_pred CCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546 127 VDKRQVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (207)
. .........+...+.++..+.
T Consensus 259 ~----~~~g~~l~~~~~~~~pi~~i~ 280 (302)
T 3b9q_A 259 S----ARGGCVVSVVEELGIPVKFIG 280 (302)
T ss_dssp C----SCTHHHHHHHHHHCCCEEEEE
T ss_pred C----CccChheehHHHHCCCEEEEe
Confidence 2 234455566777777776554
No 397
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.20 E-value=0.0032 Score=48.88 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=19.2
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHh
Q 028546 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
|.+|. ++ .-|+|+|++|||||||...|.
T Consensus 1 ~~~m~-m~-~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 1 MTEMT-KP-FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp ------CC-EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCC-CC-ceEEEECCCcCcHHHHHHHHH
Confidence 55655 32 468899999999999998775
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.19 E-value=0.0033 Score=43.45 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
.|++.|.+||||||+...|-
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67888999999999998874
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.17 E-value=0.0042 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~ 30 (207)
..+.|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999875
No 400
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.13 E-value=0.0028 Score=49.14 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999988654
No 401
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.13 E-value=0.0028 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++++|+.|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999988764
No 402
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.11 E-value=0.003 Score=47.55 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999988764
No 403
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.09 E-value=0.0016 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|+|||||++.+.+-..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 378999999999999999887643
No 404
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.09 E-value=0.0028 Score=48.16 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999988754
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.08 E-value=0.0053 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.-|++.|++||||||+++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467889999999999999988643
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.06 E-value=0.0036 Score=45.08 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
..-|+++|++||||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998754
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.04 E-value=0.0035 Score=45.13 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
-++++|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 408
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.03 E-value=0.0034 Score=49.06 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998874
No 409
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.02 E-value=0.0036 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++++|++|+|||||+..+.+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0038 Score=46.46 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
-.|+++|++|+||||+.+.+-
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999874
No 411
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.99 E-value=0.0032 Score=43.88 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.-.+++.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999887643
No 412
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.98 E-value=0.0052 Score=43.77 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
..+.|.++|.+||||||+.+.|-.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988753
No 413
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.97 E-value=0.0044 Score=45.11 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
.-.+++.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 414
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0033 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++|+|+.|||||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999988754
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.96 E-value=0.0048 Score=46.92 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.95 E-value=0.0039 Score=48.88 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
--++++|+.||||||++..+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 468899999999999999875
No 417
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.94 E-value=0.0059 Score=47.10 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
..|+|+|++|||||||...|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998875
No 418
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.92 E-value=0.0044 Score=45.98 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
-.+++.|++|+|||+|++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 419
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.89 E-value=0.0059 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|||||||++.+.+...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 420
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.87 E-value=0.0082 Score=42.71 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=54.9
Q ss_pred EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCCCCCHH
Q 028546 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER--GGDVIIVLVGNKTDLVDKRQVSIE 135 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~ 135 (207)
+.+.++|+|+.. .......+..+|.+|++...+... ..+...+..+.... ....++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 678999999754 334455667899999999887543 55566666665432 234677999999985321 223
Q ss_pred HHHHHHHHhCCeEE
Q 028546 136 EGDGKAKEFGVMFI 149 (207)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (207)
........++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44455555665554
No 421
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.87 E-value=0.0059 Score=44.78 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=21.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhc
Q 028546 6 PLAKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 6 ~~~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
......|.++|++||||||+...|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999987753
No 422
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.84 E-value=0.0045 Score=44.51 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=19.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhc
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
++-.+++.||||+||||+..++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999999887754
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.84 E-value=0.0068 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
.++++|+.|+|||||++.+.+...
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999987543
No 424
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.83 E-value=0.0053 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999987643
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.80 E-value=0.0048 Score=50.25 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
-++|+|+.|+|||||++.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHh
Confidence 46899999999999999886
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.80 E-value=0.0049 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
.-.++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34788999999999999998875
No 427
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0068 Score=50.89 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|+|||||++.+.+-..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 478999999999999999887543
No 428
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.78 E-value=0.007 Score=43.17 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
.|.|.|++||||||+.+.|-
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 429
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.77 E-value=0.0052 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999888764
No 430
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.76 E-value=0.0055 Score=48.17 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028546 12 LVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~ 30 (207)
.+|+|+.|||||||++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 431
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.75 E-value=0.0049 Score=46.44 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998875
No 432
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.74 E-value=0.0085 Score=48.89 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=46.6
Q ss_pred EEEEEEecCChhhhccc-------ccccc-----ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546 58 VRLQLWDTAGQERFRSL-------IPSYI-----RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~-------~~~~~-----~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 125 (207)
+.+.++||+|....... ....+ ...+-++|++|++.... .......+....+ ...+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~~---itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAVG---LTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHTC---CSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhcC---CCEEEEEcCC
Confidence 45889999995321110 01111 23567899999875422 2222333443322 2368899999
Q ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546 126 LVDKRQVSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (207)
- ... ...+......++.++.++.
T Consensus 450 ~--tak--gG~~lsi~~~~~~PI~fig 472 (503)
T 2yhs_A 450 G--TAK--GGVIFSVADQFGIPIRYIG 472 (503)
T ss_dssp G--CSC--CTHHHHHHHHHCCCEEEEE
T ss_pred C--ccc--ccHHHHHHHHHCCCEEEEe
Confidence 4 222 2234556667788876643
No 433
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.72 E-value=0.0068 Score=44.42 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~ 30 (207)
..+++.|+|+|||||||+...|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 45899999999999999998774
No 434
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.72 E-value=0.0063 Score=43.93 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
.+.|+++|++||||||+...|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998774
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.70 E-value=0.0097 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688899999999999999865
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.70 E-value=0.0055 Score=49.41 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
+++++|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999988764
No 437
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.68 E-value=0.0079 Score=50.52 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
.++++|+.|+|||||++.+.+...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 578999999999999999887543
No 438
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.64 E-value=0.0066 Score=43.97 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
-++|.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998863
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.63 E-value=0.0083 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999988764
No 440
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.62 E-value=0.0087 Score=50.28 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
.++++|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987644
No 441
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.60 E-value=0.0051 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68899999999999999877654
No 442
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.59 E-value=0.0078 Score=43.19 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028546 12 LVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~ 30 (207)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999999874
No 443
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.58 E-value=0.0074 Score=43.13 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.+++.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988643
No 444
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.57 E-value=0.0082 Score=40.49 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
...|++.|++|+|||++...+-..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999988654
No 445
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.56 E-value=0.0095 Score=49.30 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
-++++|+.|+|||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987654
No 446
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.56 E-value=0.0054 Score=51.44 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58899999999999999888764
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.55 E-value=0.0096 Score=49.29 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
.++|+|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987644
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.54 E-value=0.011 Score=43.23 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=21.2
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhc
Q 028546 3 SVSPLAKYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~ 31 (207)
++...+..-|++.|.+||||||+++.+..
T Consensus 15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 15 QTQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445567789999999999999998753
No 449
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.52 E-value=0.006 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999887654
No 450
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.51 E-value=0.0067 Score=45.25 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
...|+|.|.+||||||+++.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999877543
No 451
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.50 E-value=0.0076 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.-.+++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999988653
No 452
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.48 E-value=0.0084 Score=44.41 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
-.+++.|++|+|||+|+..+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 453
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.47 E-value=0.011 Score=42.84 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
++-.-|++.|++||||||++..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 455678899999999999999875
No 454
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.46 E-value=0.0081 Score=45.19 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.-.+++.|++|+|||+|+.++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999988643
No 455
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.44 E-value=0.013 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
.-+++.|+||+|||+|..++-.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5567779999999999998754
No 456
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.44 E-value=0.0072 Score=47.22 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-+.|+|++|+|||||+..+.+.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999865
No 457
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.44 E-value=0.0082 Score=43.94 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 028546 11 KLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~ 31 (207)
-++++|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999877753
No 458
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.43 E-value=0.007 Score=50.67 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999887653
No 459
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.012 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC
Q 028546 12 LVFLGDQSVGKTSIITRFMYDKFD 35 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~~~~ 35 (207)
++++|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 689999999999999999876543
No 460
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.35 E-value=0.0091 Score=45.52 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.+++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999988753
No 461
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.34 E-value=0.01 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
.+++|++++|...|||||++.++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 457999999999999999999874
No 462
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.30 E-value=0.0097 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45889999999999999988653
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.27 E-value=0.012 Score=42.15 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
..|+|+|++|+|||||...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999987553
No 464
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.26 E-value=0.013 Score=44.60 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=18.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
...+++.|++|+|||+|...+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999997554
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.25 E-value=0.013 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
.-|++.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999998764
No 466
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.23 E-value=0.0088 Score=46.45 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028546 12 LVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~ 31 (207)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998866
No 467
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.23 E-value=0.0099 Score=45.32 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=47.0
Q ss_pred EEEEEEecCChhhhccc----cccccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546 58 VRLQLWDTAGQERFRSL----IPSYIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ 131 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 131 (207)
+.+.|+||+|....... ....+. ..+.+++|+|++.. ...+..+...+.. . ...-+|+||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~-l---~~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS-V---PVNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS-S---CCCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc-C---CCCEEEEeCCCcccc--
Confidence 57999999996543211 111222 36788999988743 2333333322221 1 123567799996322
Q ss_pred CCHHHHHHHHHHhCCeEEEEe
Q 028546 132 VSIEEGDGKAKEFGVMFIETS 152 (207)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (207)
...+.......+.++.++.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2345556667787765544
No 468
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.21 E-value=0.087 Score=38.39 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=58.9
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE 136 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 136 (207)
.+.+.|+|+|+.. .......+..+|.+|++...+ ..+...+...++.+.........+.+|+|+.+... ....
T Consensus 118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~-- 190 (245)
T 3ea0_A 118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS-- 190 (245)
T ss_dssp HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH--
T ss_pred hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH--
Confidence 3679999998743 234455677899999999876 46677777777777654333455889999998532 2333
Q ss_pred HHHHHHHhCCeEEEEecC
Q 028546 137 GDGKAKEFGVMFIETSAK 154 (207)
Q Consensus 137 ~~~~~~~~~~~~~~~s~~ 154 (207)
+...+.++.+++.+-..
T Consensus 191 -~~~~~~~~~~v~~~ip~ 207 (245)
T 3ea0_A 191 -DEIEKVIGRPISKRIPQ 207 (245)
T ss_dssp -HHHHHHHTSCEEEEECC
T ss_pred -HHHHHHhCCCeEEECCC
Confidence 33344567777655333
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.21 E-value=0.0063 Score=46.27 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=16.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~ 30 (207)
+.+-|+|.|+.||||||+.+.|.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34569999999999999998875
No 470
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.18 E-value=0.012 Score=45.13 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=48.4
Q ss_pred EEEEEEecCChhhhcccc-------ccc-----cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546 58 VRLQLWDTAGQERFRSLI-------PSY-----IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125 (207)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~-------~~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 125 (207)
+.+.++|+||........ ... -...+.+++|+|+... .+.+.. ...+.... ...-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCEEEEeCCC
Confidence 468999999953211110 111 1247889999999733 222222 23333322 23467789999
Q ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEEec
Q 028546 126 LVDKRQVSIEEGDGKAKEFGVMFIETSA 153 (207)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 153 (207)
... . ...+.......+.|+.++..
T Consensus 261 ~~~--~--gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA--K--GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS--C--TTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc--c--hHHHHHHHHHHCCCEEEEeC
Confidence 521 1 22356667778888877654
No 471
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.16 E-value=0.01 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.++|.|++|+|||||++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 472
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.14 E-value=0.011 Score=43.16 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=16.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
-.-|+|.|++||||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36688889999999999998753
No 473
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.13 E-value=0.011 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 474
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.12 E-value=0.016 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
..-|+|+||.|||||||...+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 34588999999999999998864
No 475
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.10 E-value=0.013 Score=45.56 Aligned_cols=18 Identities=22% Similarity=0.658 Sum_probs=16.4
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 028546 13 VFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 13 ~v~G~~~sGKStli~~l~ 30 (207)
+|+|+.|+|||||+.++.
T Consensus 27 ~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 689999999999999874
No 476
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.08 E-value=0.014 Score=42.98 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~ 30 (207)
++..-|++.|++||||||++..+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445678999999999999999875
No 477
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.07 E-value=0.013 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
..+++.|++|+|||+|+..+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998754
No 478
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.07 E-value=0.011 Score=48.74 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028546 12 LVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~ 30 (207)
++|+|++|||||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 479
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.06 E-value=0.019 Score=42.94 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 8 ~~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
....+++.|++|+|||+|...+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4467999999999999999988653
No 480
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.96 E-value=0.014 Score=45.26 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.+++.|++|+||||++..+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 481
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.95 E-value=0.014 Score=45.00 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.|++.|++|+|||+|+.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 56899999999999999988754
No 482
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.94 E-value=0.073 Score=38.16 Aligned_cols=85 Identities=11% Similarity=-0.006 Sum_probs=54.7
Q ss_pred EEEEEEecCCh-hhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028546 58 VRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE 136 (207)
Q Consensus 58 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 136 (207)
+.+.++|+|+. .. ......+..+|.+|++...+. .+...+...+..+.... +.++.+|+|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 57899999875 32 233445678999999998763 56666666666666532 3568899999985320 11334
Q ss_pred HHHHHHHhCCeEE
Q 028546 137 GDGKAKEFGVMFI 149 (207)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (207)
..+....++.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4444455665554
No 483
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.94 E-value=0.15 Score=38.88 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=16.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
+++.|++|+|||+++..+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455577999999999988543
No 484
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.89 E-value=0.016 Score=40.76 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028546 12 LVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 12 i~v~G~~~sGKStli~~l~~~ 32 (207)
|+|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998754
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.88 E-value=0.026 Score=44.08 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 028546 9 KYKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~ 30 (207)
..+|+++|++|+||||+...+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999998653
No 486
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.88 E-value=0.016 Score=51.09 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
.++++|+.|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999986654
No 487
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.87 E-value=0.024 Score=43.02 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Q 028546 10 YKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~~ 32 (207)
-.+++.|++|+|||+++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999987653
No 488
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.86 E-value=0.014 Score=46.38 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
-+.|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 37899999999999999775
No 489
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.85 E-value=0.023 Score=43.49 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=18.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 028546 10 YKLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~ 30 (207)
.-|+|+|+.|||||||...+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHH
Confidence 457889999999999999885
No 490
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.035 Score=40.49 Aligned_cols=27 Identities=11% Similarity=-0.014 Sum_probs=21.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhcCC
Q 028546 7 LAKYKLVFLGDQSVGKTSIITRFMYDK 33 (207)
Q Consensus 7 ~~~~~i~v~G~~~sGKStli~~l~~~~ 33 (207)
.+++-|++.|+++.||++|++++++..
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCceEEEecCcccccHHHHHHHHhccc
Confidence 344555555999999999999999874
No 491
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.79 E-value=0.012 Score=45.40 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=18.2
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
-.+|+|+.|+|||||+.++.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 46799999999999999987
No 492
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.78 E-value=0.018 Score=44.40 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
-++|.|++|+|||||+.++...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4788999999999999998754
No 493
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.77 E-value=0.012 Score=51.85 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~~~ 34 (207)
.++|+|+.|+|||||++.+.+...
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987643
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.76 E-value=0.018 Score=44.30 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~ 31 (207)
...+++.|++|+|||+|+.++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999998854
No 495
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.76 E-value=0.086 Score=38.97 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=43.2
Q ss_pred EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHH---HHHHHHhcCCCCeE-EEEEeCCCC
Q 028546 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW---IEEVRTERGGDVII-VLVGNKTDL 126 (207)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~---~~~i~~~~~~~~p~-ivv~nK~D~ 126 (207)
.+.+.|+|+|+.... .....+..+|.+|++...+. .++..+... +..+......+.++ -+|+|+.|.
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 367999999975322 23344567999999999875 444444443 44444333445666 489999985
No 496
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.72 E-value=0.018 Score=45.58 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
..+++|+|++|+|||+|++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999988754
No 497
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.69 E-value=0.015 Score=45.40 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 9 ~~~i~v~G~~~sGKStli~~l~~~ 32 (207)
.-.++|.|++|+|||+|+..+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988753
No 498
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.69 E-value=0.025 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhc
Q 028546 10 YKLVFLGDQSVGKTSIITRFMY 31 (207)
Q Consensus 10 ~~i~v~G~~~sGKStli~~l~~ 31 (207)
.-|+|+|+.|||||||...|-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998863
No 499
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.68 E-value=0.019 Score=45.01 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 028546 11 KLVFLGDQSVGKTSIITRFM 30 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~ 30 (207)
-.+++|+.|+|||||++.+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHH
Confidence 46889999999999999886
No 500
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.67 E-value=0.019 Score=44.48 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 028546 11 KLVFLGDQSVGKTSIITRFMYD 32 (207)
Q Consensus 11 ~i~v~G~~~sGKStli~~l~~~ 32 (207)
.+++.|++|+|||+++..+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988654
Done!