Query 028547
Match_columns 207
No_of_seqs 145 out of 1836
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 9.4E-21 2E-25 142.4 12.9 123 33-163 36-162 (238)
2 PF01209 Ubie_methyltran: ubiE 99.9 3E-21 6.5E-26 146.2 10.0 111 45-163 45-159 (233)
3 TIGR03840 TMPT_Se_Te thiopurin 99.8 3.7E-20 8E-25 138.6 14.1 140 14-159 1-154 (213)
4 KOG1271 Methyltransferases [Ge 99.8 5E-21 1.1E-25 135.1 8.8 154 6-160 11-184 (227)
5 PRK13255 thiopurine S-methyltr 99.8 4.4E-19 9.5E-24 133.2 14.8 139 13-157 3-155 (218)
6 PF08241 Methyltransf_11: Meth 99.8 1.6E-19 3.5E-24 118.3 10.4 95 52-155 1-95 (95)
7 COG2227 UbiG 2-polyprenyl-3-me 99.8 3.2E-19 6.9E-24 132.2 9.1 104 47-159 59-163 (243)
8 PRK11036 putative S-adenosyl-L 99.8 4.6E-19 1E-23 136.9 10.1 116 37-161 35-153 (255)
9 PF12847 Methyltransf_18: Meth 99.8 2.7E-18 5.9E-23 116.2 11.3 103 49-157 3-111 (112)
10 PLN02233 ubiquinone biosynthes 99.8 4.6E-18 1E-22 131.4 14.0 107 48-162 74-187 (261)
11 PRK11207 tellurite resistance 99.8 6.5E-18 1.4E-22 125.5 14.0 102 48-157 31-134 (197)
12 PRK13256 thiopurine S-methyltr 99.8 1.3E-17 2.9E-22 124.9 15.0 145 9-159 5-165 (226)
13 PTZ00098 phosphoethanolamine N 99.8 1.2E-17 2.6E-22 129.3 14.5 119 36-160 41-159 (263)
14 PF13847 Methyltransf_31: Meth 99.8 4.5E-18 9.8E-23 121.4 11.2 102 49-159 5-112 (152)
15 PLN02244 tocopherol O-methyltr 99.8 1E-17 2.2E-22 134.1 13.5 106 47-160 118-226 (340)
16 PLN02396 hexaprenyldihydroxybe 99.8 4.8E-18 1E-22 134.1 11.0 103 49-160 133-238 (322)
17 PRK10258 biotin biosynthesis p 99.8 2.1E-17 4.5E-22 127.4 13.5 102 48-161 43-144 (251)
18 TIGR00477 tehB tellurite resis 99.8 2.9E-17 6.3E-22 121.8 13.5 103 47-157 30-133 (195)
19 PF03848 TehB: Tellurite resis 99.8 2.9E-17 6.2E-22 119.9 12.6 102 49-158 32-134 (192)
20 PF05401 NodS: Nodulation prot 99.7 1E-17 2.2E-22 121.0 9.7 138 13-158 6-147 (201)
21 PF05724 TPMT: Thiopurine S-me 99.7 8.5E-18 1.9E-22 126.0 9.6 141 12-158 2-156 (218)
22 PRK14103 trans-aconitate 2-met 99.7 3.5E-17 7.6E-22 126.4 12.1 109 36-158 18-127 (255)
23 COG2230 Cfa Cyclopropane fatty 99.7 2.4E-17 5.3E-22 126.2 10.7 117 37-162 62-181 (283)
24 TIGR02752 MenG_heptapren 2-hep 99.7 1E-16 2.2E-21 122.1 13.1 115 39-161 37-155 (231)
25 PF13489 Methyltransf_23: Meth 99.7 7.5E-17 1.6E-21 115.8 11.4 110 35-161 8-119 (161)
26 PRK15068 tRNA mo(5)U34 methylt 99.7 1.4E-16 2.9E-21 126.6 13.4 104 46-158 121-227 (322)
27 PF13649 Methyltransf_25: Meth 99.7 3.7E-17 8.1E-22 108.6 8.0 95 51-151 1-101 (101)
28 PRK12335 tellurite resistance 99.7 1.4E-16 3E-21 125.0 12.1 101 49-157 122-223 (287)
29 PRK01683 trans-aconitate 2-met 99.7 2E-16 4.4E-21 122.4 12.8 109 37-157 21-130 (258)
30 TIGR00452 methyltransferase, p 99.7 2.3E-16 5E-21 124.1 13.2 105 45-158 119-226 (314)
31 PLN02336 phosphoethanolamine N 99.7 2.4E-16 5.2E-21 132.0 13.9 114 39-160 258-372 (475)
32 PF02353 CMAS: Mycolic acid cy 99.7 2.1E-16 4.4E-21 122.5 12.4 112 38-159 53-168 (273)
33 TIGR03587 Pse_Me-ase pseudamin 99.7 2.3E-16 4.9E-21 117.6 12.1 98 49-158 45-143 (204)
34 PRK15451 tRNA cmo(5)U34 methyl 99.7 3.6E-16 7.8E-21 120.1 12.7 107 42-157 52-164 (247)
35 KOG1270 Methyltransferases [Co 99.7 5.2E-17 1.1E-21 121.4 7.7 99 49-159 91-197 (282)
36 TIGR02072 BioC biotin biosynth 99.7 5.6E-16 1.2E-20 118.4 13.4 103 49-161 36-139 (240)
37 PRK00107 gidB 16S rRNA methylt 99.7 5.2E-16 1.1E-20 113.8 12.4 116 48-176 46-164 (187)
38 TIGR00138 gidB 16S rRNA methyl 99.7 3.3E-16 7.2E-21 114.6 10.2 125 48-185 43-171 (181)
39 COG4106 Tam Trans-aconitate me 99.7 2.6E-16 5.6E-21 114.4 9.3 110 36-157 19-129 (257)
40 KOG1540 Ubiquinone biosynthesi 99.7 8.3E-16 1.8E-20 114.4 11.6 110 45-162 98-219 (296)
41 TIGR00740 methyltransferase, p 99.7 1.5E-15 3.3E-20 116.2 13.1 105 45-158 52-162 (239)
42 PRK05785 hypothetical protein; 99.7 1.6E-15 3.5E-20 114.9 12.6 91 45-150 50-140 (226)
43 PF08242 Methyltransf_12: Meth 99.7 1.6E-17 3.5E-22 110.0 1.1 95 52-153 1-99 (99)
44 PRK00216 ubiE ubiquinone/menaq 99.7 1.7E-15 3.7E-20 115.7 11.7 115 39-161 43-162 (239)
45 KOG4300 Predicted methyltransf 99.6 1.2E-15 2.5E-20 110.2 9.4 112 43-161 71-186 (252)
46 PRK11705 cyclopropane fatty ac 99.6 5E-15 1.1E-19 120.1 13.8 113 39-161 159-271 (383)
47 PF05175 MTS: Methyltransferas 99.6 3.4E-15 7.5E-20 108.4 11.6 110 47-160 31-143 (170)
48 TIGR02469 CbiT precorrin-6Y C5 99.6 7.9E-15 1.7E-19 100.8 12.7 100 48-157 20-122 (124)
49 PLN02490 MPBQ/MSBQ methyltrans 99.6 4.1E-15 8.8E-20 118.0 12.4 102 48-158 114-216 (340)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 4.1E-15 8.9E-20 112.4 12.0 115 39-161 31-147 (223)
51 PF07021 MetW: Methionine bios 99.6 1E-15 2.3E-20 110.4 7.9 96 38-146 5-101 (193)
52 smart00828 PKS_MT Methyltransf 99.6 3.3E-15 7.2E-20 113.2 10.5 101 49-158 1-105 (224)
53 PRK08317 hypothetical protein; 99.6 9.8E-15 2.1E-19 111.4 13.1 105 46-158 18-125 (241)
54 PF08003 Methyltransf_9: Prote 99.6 1.1E-14 2.5E-19 111.8 13.0 109 45-162 113-224 (315)
55 PRK11873 arsM arsenite S-adeno 99.6 5.7E-15 1.2E-19 115.2 11.6 103 48-158 78-184 (272)
56 PLN02336 phosphoethanolamine N 99.6 1E-14 2.2E-19 122.2 13.7 115 38-158 28-143 (475)
57 PRK06922 hypothetical protein; 99.6 5E-15 1.1E-19 124.7 11.5 110 49-158 420-538 (677)
58 PRK09489 rsmC 16S ribosomal RN 99.6 1.8E-14 4E-19 115.1 13.5 105 49-158 198-304 (342)
59 TIGR00537 hemK_rel_arch HemK-r 99.6 2.2E-14 4.7E-19 105.1 12.8 109 49-161 21-144 (179)
60 smart00138 MeTrc Methyltransfe 99.6 9.7E-15 2.1E-19 113.0 11.4 103 49-157 101-242 (264)
61 PRK11088 rrmA 23S rRNA methylt 99.6 1.9E-14 4.2E-19 112.1 13.1 106 38-161 76-185 (272)
62 PRK08287 cobalt-precorrin-6Y C 99.6 3.2E-14 7E-19 104.9 13.5 100 46-158 30-132 (187)
63 PF13659 Methyltransf_26: Meth 99.6 6.1E-15 1.3E-19 100.5 8.9 108 50-157 3-115 (117)
64 PRK00121 trmB tRNA (guanine-N( 99.6 8.6E-15 1.9E-19 109.2 10.4 112 47-158 40-157 (202)
65 PRK15001 SAM-dependent 23S rib 99.6 2.3E-14 5E-19 115.3 13.2 105 49-157 230-340 (378)
66 PRK14966 unknown domain/N5-glu 99.6 1.9E-14 4E-19 116.2 12.2 155 13-168 218-393 (423)
67 TIGR00080 pimt protein-L-isoas 99.6 6.9E-14 1.5E-18 105.4 14.3 107 37-157 67-177 (215)
68 PRK13944 protein-L-isoaspartat 99.6 9.4E-14 2E-18 103.8 13.8 105 39-157 64-173 (205)
69 TIGR03534 RF_mod_PrmC protein- 99.6 4E-14 8.8E-19 109.0 12.0 142 14-157 54-217 (251)
70 TIGR00406 prmA ribosomal prote 99.6 5.2E-14 1.1E-18 110.4 12.7 107 39-159 152-261 (288)
71 PRK14967 putative methyltransf 99.6 5.4E-14 1.2E-18 106.5 12.3 121 36-158 25-160 (223)
72 PLN03075 nicotianamine synthas 99.6 6.2E-14 1.4E-18 108.7 12.4 105 46-157 122-233 (296)
73 KOG1541 Predicted protein carb 99.6 3.2E-14 6.9E-19 103.8 10.1 114 49-167 52-170 (270)
74 PRK00377 cbiT cobalt-precorrin 99.6 9.1E-14 2E-18 103.4 12.5 102 46-157 39-145 (198)
75 TIGR03533 L3_gln_methyl protei 99.6 7E-14 1.5E-18 109.3 12.2 108 48-157 122-251 (284)
76 TIGR00091 tRNA (guanine-N(7)-) 99.6 3.5E-14 7.6E-19 105.3 10.0 114 46-160 16-135 (194)
77 COG4123 Predicted O-methyltran 99.5 7.4E-14 1.6E-18 105.3 11.1 109 49-157 46-170 (248)
78 KOG2361 Predicted methyltransf 99.5 5.1E-14 1.1E-18 104.2 9.9 144 13-163 36-189 (264)
79 PRK05134 bifunctional 3-demeth 99.5 1.1E-13 2.3E-18 105.6 12.1 105 47-159 48-153 (233)
80 PRK06202 hypothetical protein; 99.5 1.9E-13 4.1E-18 104.2 13.4 105 48-161 61-170 (232)
81 TIGR02021 BchM-ChlM magnesium 99.5 1.3E-13 2.9E-18 104.1 12.4 98 48-155 56-156 (219)
82 COG2264 PrmA Ribosomal protein 99.5 4.7E-14 1E-18 109.1 10.0 113 35-160 151-266 (300)
83 PRK13942 protein-L-isoaspartat 99.5 1.3E-13 2.9E-18 103.5 11.9 107 37-157 66-176 (212)
84 PRK00312 pcm protein-L-isoaspa 99.5 4.7E-13 1E-17 100.6 14.8 135 9-158 37-176 (212)
85 PRK11188 rrmJ 23S rRNA methylt 99.5 1.3E-13 2.9E-18 103.2 11.6 105 47-162 51-170 (209)
86 COG2813 RsmC 16S RNA G1207 met 99.5 3.1E-13 6.7E-18 104.1 13.4 152 5-161 109-270 (300)
87 PRK09328 N5-glutamine S-adenos 99.5 2.6E-13 5.7E-18 105.9 13.4 143 13-157 73-238 (275)
88 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.8E-13 4E-18 109.8 12.3 121 38-159 113-237 (390)
89 COG2242 CobL Precorrin-6B meth 99.5 4.6E-13 9.9E-18 96.2 12.7 146 42-201 29-179 (187)
90 TIGR00536 hemK_fam HemK family 99.5 2.2E-13 4.7E-18 106.8 12.0 107 49-157 116-244 (284)
91 PRK11805 N5-glutamine S-adenos 99.5 2.2E-13 4.7E-18 107.6 11.9 107 49-157 135-263 (307)
92 PRK07402 precorrin-6B methylas 99.5 3E-13 6.6E-18 100.4 12.1 115 35-160 27-145 (196)
93 PF06325 PrmA: Ribosomal prote 99.5 1.7E-13 3.6E-18 106.9 10.8 111 36-160 151-262 (295)
94 PRK04266 fibrillarin; Provisio 99.5 5.9E-13 1.3E-17 100.6 13.4 121 27-157 48-176 (226)
95 TIGR01983 UbiG ubiquinone bios 99.5 2.9E-13 6.2E-18 102.6 11.5 103 48-158 46-150 (224)
96 TIGR03704 PrmC_rel_meth putati 99.5 4.3E-13 9.2E-18 103.1 12.4 109 49-158 88-217 (251)
97 PRK00517 prmA ribosomal protei 99.5 2.7E-13 5.9E-18 104.4 11.3 97 48-160 120-216 (250)
98 TIGR02081 metW methionine bios 99.5 3.4E-13 7.3E-18 100.1 10.9 94 43-149 10-104 (194)
99 KOG2352 Predicted spermine/spe 99.5 5.2E-13 1.1E-17 108.2 12.3 165 3-168 3-174 (482)
100 COG2890 HemK Methylase of poly 99.5 5.9E-13 1.3E-17 103.7 12.3 153 13-168 76-250 (280)
101 PRK00811 spermidine synthase; 99.5 3.7E-13 8E-18 105.2 11.1 111 44-157 73-191 (283)
102 TIGR01177 conserved hypothetic 99.5 8E-13 1.7E-17 105.7 13.0 113 46-160 181-297 (329)
103 cd02440 AdoMet_MTases S-adenos 99.5 9.3E-13 2E-17 86.8 11.3 101 50-156 1-103 (107)
104 TIGR02716 C20_methyl_CrtF C-20 99.5 7.8E-13 1.7E-17 104.8 12.8 104 46-158 148-255 (306)
105 PRK14968 putative methyltransf 99.5 9.2E-13 2E-17 97.0 12.2 110 46-158 22-149 (188)
106 TIGR03438 probable methyltrans 99.5 7.2E-13 1.6E-17 104.6 12.1 104 49-157 65-177 (301)
107 smart00650 rADc Ribosomal RNA 99.5 1.6E-12 3.4E-17 94.3 12.3 108 38-157 4-113 (169)
108 PRK01544 bifunctional N5-gluta 99.5 7E-13 1.5E-17 111.3 11.6 107 49-157 140-269 (506)
109 COG2518 Pcm Protein-L-isoaspar 99.5 2.4E-12 5.2E-17 94.5 12.9 109 35-158 60-170 (209)
110 PRK07580 Mg-protoporphyrin IX 99.5 1.6E-12 3.4E-17 98.9 12.4 95 48-152 64-161 (230)
111 PLN02585 magnesium protoporphy 99.4 1.4E-12 2.9E-17 103.1 11.9 96 48-154 145-247 (315)
112 PF03291 Pox_MCEL: mRNA cappin 99.4 2.3E-12 5.1E-17 102.3 11.7 111 49-162 64-191 (331)
113 PRK10909 rsmD 16S rRNA m(2)G96 99.4 2.6E-12 5.7E-17 95.1 10.9 103 49-159 55-161 (199)
114 KOG3191 Predicted N6-DNA-methy 99.4 4.6E-12 1E-16 89.9 11.5 151 3-158 2-169 (209)
115 PHA03411 putative methyltransf 99.4 8.5E-12 1.8E-16 95.6 13.8 108 49-161 66-187 (279)
116 PTZ00146 fibrillarin; Provisio 99.4 4.6E-12 9.9E-17 98.0 12.3 120 28-156 109-236 (293)
117 PHA03412 putative methyltransf 99.4 4.3E-12 9.3E-17 95.1 11.8 138 9-152 8-158 (241)
118 KOG3010 Methyltransferase [Gen 99.4 2.1E-12 4.6E-17 95.7 9.2 101 49-159 35-139 (261)
119 PRK04457 spermidine synthase; 99.4 9.2E-12 2E-16 96.3 11.8 113 46-161 65-181 (262)
120 PRK10901 16S rRNA methyltransf 99.4 1.2E-11 2.7E-16 102.1 13.2 114 45-158 242-373 (427)
121 PRK14903 16S rRNA methyltransf 99.4 1.2E-11 2.5E-16 102.1 12.6 116 45-160 235-369 (431)
122 TIGR00417 speE spermidine synt 99.3 9.1E-12 2E-16 96.9 10.4 112 43-157 68-186 (270)
123 COG2263 Predicted RNA methylas 99.3 1.2E-11 2.5E-16 88.8 9.9 76 47-126 45-121 (198)
124 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.1E-11 2.4E-16 107.9 11.6 122 37-160 530-659 (702)
125 PRK13943 protein-L-isoaspartat 99.3 2.3E-11 4.9E-16 96.4 12.3 106 38-157 71-180 (322)
126 PLN02232 ubiquinone biosynthes 99.3 6.9E-12 1.5E-16 90.1 8.5 81 74-162 1-86 (160)
127 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.5E-11 5.5E-16 94.1 12.1 115 46-161 70-203 (264)
128 PRK15128 23S rRNA m(5)C1962 me 99.3 1.2E-11 2.7E-16 100.6 10.4 116 48-163 221-345 (396)
129 PLN02366 spermidine synthase 99.3 2.2E-11 4.8E-16 95.9 11.4 109 45-156 89-205 (308)
130 PRK01581 speE spermidine synth 99.3 2.3E-11 5.1E-16 96.6 11.1 111 45-157 148-268 (374)
131 PRK14902 16S rRNA methyltransf 99.3 2.6E-11 5.7E-16 100.7 12.0 115 46-160 249-382 (444)
132 PRK14901 16S rRNA methyltransf 99.3 3E-11 6.6E-16 100.0 12.3 116 45-160 250-387 (434)
133 COG4976 Predicted methyltransf 99.3 1.6E-12 3.4E-17 95.7 3.8 112 35-157 113-225 (287)
134 PF01135 PCMT: Protein-L-isoas 99.3 1.4E-11 3E-16 91.9 8.6 109 35-157 60-172 (209)
135 PRK14904 16S rRNA methyltransf 99.3 4.5E-11 9.7E-16 99.3 12.1 114 46-161 249-381 (445)
136 PF00891 Methyltransf_2: O-met 99.3 5.4E-11 1.2E-15 91.2 11.6 99 46-158 99-200 (241)
137 KOG2899 Predicted methyltransf 99.3 2.8E-11 6.1E-16 89.8 9.3 104 49-156 60-208 (288)
138 TIGR00438 rrmJ cell division p 99.3 4.8E-11 1.1E-15 88.0 10.4 103 48-159 33-148 (188)
139 KOG1975 mRNA cap methyltransfe 99.3 1.8E-11 3.8E-16 94.4 7.2 117 41-161 112-241 (389)
140 PLN02672 methionine S-methyltr 99.3 5.3E-11 1.2E-15 106.3 11.3 144 13-157 82-278 (1082)
141 TIGR00563 rsmB ribosomal RNA s 99.3 1.3E-10 2.8E-15 96.1 12.8 118 43-160 234-371 (426)
142 PRK13168 rumA 23S rRNA m(5)U19 99.2 9.4E-11 2E-15 97.4 11.6 99 46-156 296-399 (443)
143 PLN02781 Probable caffeoyl-CoA 99.2 5.7E-11 1.2E-15 90.5 9.3 100 48-157 69-178 (234)
144 PF02390 Methyltransf_4: Putat 99.2 4.5E-11 9.7E-16 88.5 8.3 108 50-157 20-133 (195)
145 PRK03612 spermidine synthase; 99.2 7.7E-11 1.7E-15 99.5 10.7 110 46-157 296-415 (521)
146 PF05891 Methyltransf_PK: AdoM 99.2 1.1E-10 2.3E-15 86.2 9.5 103 49-157 57-161 (218)
147 PRK03522 rumB 23S rRNA methylu 99.2 1.5E-10 3.4E-15 92.0 10.6 73 49-122 175-249 (315)
148 COG1092 Predicted SAM-dependen 99.2 1.2E-10 2.5E-15 94.0 9.7 128 35-164 207-343 (393)
149 PF05219 DREV: DREV methyltran 99.2 3.8E-10 8.2E-15 85.2 10.4 93 49-157 96-188 (265)
150 PF06080 DUF938: Protein of un 99.2 3.6E-10 7.7E-15 83.0 10.0 119 34-157 12-141 (204)
151 COG3963 Phospholipid N-methylt 99.2 2E-09 4.4E-14 75.7 13.1 110 42-159 43-158 (194)
152 PLN02823 spermine synthase 99.2 4.4E-10 9.5E-15 89.5 11.2 112 45-157 101-220 (336)
153 PF01739 CheR: CheR methyltran 99.2 3.1E-10 6.7E-15 83.8 9.6 103 49-157 33-175 (196)
154 COG0220 Predicted S-adenosylme 99.2 2.9E-10 6.4E-15 85.6 9.4 108 50-157 51-164 (227)
155 KOG1499 Protein arginine N-met 99.1 1.9E-10 4.2E-15 89.9 8.5 102 48-155 61-165 (346)
156 PRK10611 chemotaxis methyltran 99.1 4.6E-10 9.9E-15 87.4 10.5 104 49-157 117-262 (287)
157 KOG2940 Predicted methyltransf 99.1 5.9E-11 1.3E-15 87.5 5.1 107 46-161 72-178 (325)
158 PF10294 Methyltransf_16: Puta 99.1 7E-10 1.5E-14 80.7 10.4 103 48-158 46-157 (173)
159 KOG2904 Predicted methyltransf 99.1 1.5E-09 3.2E-14 82.2 12.0 109 50-158 151-286 (328)
160 PF05148 Methyltransf_8: Hypot 99.1 4.6E-10 9.9E-15 82.2 9.0 102 36-161 60-162 (219)
161 PF03602 Cons_hypoth95: Conser 99.1 1.6E-10 3.5E-15 84.6 6.5 106 48-160 43-156 (183)
162 COG2519 GCD14 tRNA(1-methylade 99.1 7E-10 1.5E-14 83.4 10.0 114 36-163 83-201 (256)
163 TIGR00095 RNA methyltransferas 99.1 8.2E-10 1.8E-14 81.4 9.8 102 49-158 51-160 (189)
164 COG4122 Predicted O-methyltran 99.1 5.9E-10 1.3E-14 83.0 8.8 102 47-158 59-167 (219)
165 PRK00274 ksgA 16S ribosomal RN 99.1 1.9E-09 4.2E-14 84.0 12.0 85 37-124 32-116 (272)
166 PLN02476 O-methyltransferase 99.1 1.3E-09 2.8E-14 84.3 10.8 100 48-157 119-228 (278)
167 PRK14896 ksgA 16S ribosomal RN 99.1 8.6E-10 1.9E-14 85.3 9.8 84 37-124 19-102 (258)
168 PF01596 Methyltransf_3: O-met 99.1 5.9E-10 1.3E-14 82.9 8.5 101 47-157 45-155 (205)
169 TIGR02085 meth_trns_rumB 23S r 99.1 1.2E-09 2.7E-14 88.7 10.4 115 49-176 235-351 (374)
170 KOG1500 Protein arginine N-met 99.1 1.2E-09 2.5E-14 85.0 9.6 111 38-156 168-281 (517)
171 PF10672 Methyltrans_SAM: S-ad 99.1 7.9E-10 1.7E-14 85.9 8.6 131 30-164 108-245 (286)
172 TIGR00755 ksgA dimethyladenosi 99.1 3.5E-09 7.6E-14 81.7 12.1 85 36-124 18-105 (253)
173 COG0421 SpeE Spermidine syntha 99.0 2.3E-09 4.9E-14 83.3 10.3 110 44-156 73-189 (282)
174 TIGR00479 rumA 23S rRNA (uraci 99.0 1.4E-09 3.1E-14 90.1 9.8 97 49-156 294-395 (431)
175 PRK04148 hypothetical protein; 99.0 5.8E-09 1.3E-13 71.7 11.1 109 36-162 4-114 (134)
176 PRK00536 speE spermidine synth 99.0 6.7E-09 1.5E-13 79.8 11.5 99 42-157 67-171 (262)
177 KOG3045 Predicted RNA methylas 99.0 2.9E-09 6.3E-14 80.0 8.7 87 49-161 182-268 (325)
178 COG1041 Predicted DNA modifica 99.0 9.4E-09 2E-13 81.0 11.1 111 46-158 196-311 (347)
179 PTZ00338 dimethyladenosine tra 99.0 3.7E-09 8E-14 83.0 8.7 85 36-124 25-112 (294)
180 COG0742 N6-adenine-specific me 99.0 3.9E-08 8.4E-13 71.3 13.0 121 32-158 25-155 (187)
181 PF05185 PRMT5: PRMT5 arginine 98.9 3.4E-09 7.3E-14 87.6 8.4 100 49-155 188-295 (448)
182 COG1352 CheR Methylase of chem 98.9 1.1E-08 2.3E-13 78.9 10.4 104 48-157 97-241 (268)
183 PF08704 GCD14: tRNA methyltra 98.9 1.5E-08 3.2E-13 77.3 10.7 113 36-161 29-150 (247)
184 PLN02589 caffeoyl-CoA O-methyl 98.9 1E-08 2.2E-13 78.3 9.8 100 48-157 80-190 (247)
185 PF01564 Spermine_synth: Sperm 98.9 3.3E-09 7.3E-14 81.3 6.9 112 43-157 72-191 (246)
186 PF01170 UPF0020: Putative RNA 98.9 4.6E-09 1E-13 76.8 7.3 103 46-149 27-143 (179)
187 COG2521 Predicted archaeal met 98.9 3.3E-09 7.2E-14 78.5 5.9 109 45-157 132-245 (287)
188 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.9 4.8E-09 1E-13 80.2 6.9 147 9-158 15-200 (256)
189 TIGR00478 tly hemolysin TlyA f 98.9 2.2E-08 4.7E-13 75.7 10.2 104 35-157 62-171 (228)
190 KOG3420 Predicted RNA methylas 98.9 2.7E-09 5.8E-14 73.3 4.6 79 46-125 47-126 (185)
191 PRK01544 bifunctional N5-gluta 98.9 1.1E-08 2.3E-13 86.3 9.2 108 50-157 350-462 (506)
192 PF02475 Met_10: Met-10+ like- 98.9 9.1E-09 2E-13 76.1 7.1 101 40-154 95-199 (200)
193 PRK11933 yebU rRNA (cytosine-C 98.9 4.2E-08 9.2E-13 81.5 11.8 114 46-159 112-244 (470)
194 KOG1661 Protein-L-isoaspartate 98.8 8.7E-08 1.9E-12 70.0 10.6 108 35-157 71-193 (237)
195 PRK05031 tRNA (uracil-5-)-meth 98.8 3.3E-08 7.1E-13 80.1 9.5 94 49-155 208-318 (362)
196 COG0030 KsgA Dimethyladenosine 98.8 4.3E-08 9.4E-13 74.8 9.2 88 35-124 18-106 (259)
197 TIGR00308 TRM1 tRNA(guanine-26 98.8 6.2E-08 1.3E-12 78.4 9.9 97 49-156 46-146 (374)
198 PF01728 FtsJ: FtsJ-like methy 98.8 1E-08 2.3E-13 75.1 4.6 119 36-163 9-145 (181)
199 TIGR02143 trmA_only tRNA (urac 98.8 6.6E-08 1.4E-12 78.1 9.5 94 50-156 200-310 (353)
200 PRK04338 N(2),N(2)-dimethylgua 98.7 5.3E-08 1.1E-12 79.2 8.8 96 49-156 59-157 (382)
201 PF07942 N2227: N2227-like pro 98.7 1.6E-07 3.5E-12 72.3 10.8 114 36-157 40-202 (270)
202 PRK11727 23S rRNA mA1618 methy 98.7 4.4E-08 9.6E-13 77.5 7.6 77 49-125 116-201 (321)
203 KOG0820 Ribosomal RNA adenine 98.7 9.7E-08 2.1E-12 72.4 8.9 85 36-124 47-134 (315)
204 PF12147 Methyltransf_20: Puta 98.7 3.3E-07 7.1E-12 70.5 11.8 105 49-157 137-249 (311)
205 PF03141 Methyltransf_29: Puta 98.7 4.8E-09 1E-13 85.8 2.0 95 49-158 119-220 (506)
206 PRK00050 16S rRNA m(4)C1402 me 98.7 8.9E-08 1.9E-12 74.9 8.0 85 36-120 8-97 (296)
207 COG0293 FtsJ 23S rRNA methylas 98.7 2.4E-07 5.3E-12 68.1 9.8 117 36-163 33-165 (205)
208 KOG1331 Predicted methyltransf 98.7 3.6E-08 7.9E-13 75.3 5.3 131 13-158 11-144 (293)
209 COG2520 Predicted methyltransf 98.6 5.9E-07 1.3E-11 71.3 10.6 111 40-163 182-295 (341)
210 KOG1709 Guanidinoacetate methy 98.6 1.2E-06 2.7E-11 64.3 10.4 115 36-157 90-206 (271)
211 PF02527 GidB: rRNA small subu 98.5 7.1E-07 1.5E-11 65.3 8.7 95 50-157 51-148 (184)
212 PF09445 Methyltransf_15: RNA 98.5 1.7E-07 3.8E-12 66.8 5.2 97 50-147 2-112 (163)
213 COG0144 Sun tRNA and rRNA cyto 98.5 2.3E-06 4.9E-11 69.2 12.0 118 44-161 153-292 (355)
214 KOG3178 Hydroxyindole-O-methyl 98.5 1.2E-06 2.5E-11 69.2 9.8 98 49-158 179-276 (342)
215 PF02384 N6_Mtase: N-6 DNA Met 98.5 4.4E-07 9.5E-12 72.2 7.6 129 30-158 28-184 (311)
216 PF00398 RrnaAD: Ribosomal RNA 98.5 3.1E-06 6.8E-11 65.7 11.8 87 36-123 19-107 (262)
217 COG2265 TrmA SAM-dependent met 98.5 1.3E-06 2.9E-11 72.0 10.0 97 47-155 293-394 (432)
218 TIGR03439 methyl_EasF probable 98.5 3.7E-06 8E-11 66.7 12.0 107 44-156 74-196 (319)
219 COG0116 Predicted N6-adenine-s 98.4 5.3E-06 1.2E-10 66.6 11.1 108 46-157 190-344 (381)
220 KOG1663 O-methyltransferase [S 98.4 3.9E-06 8.5E-11 62.4 9.6 100 48-157 74-183 (237)
221 COG0500 SmtA SAM-dependent met 98.4 7.4E-06 1.6E-10 57.9 11.0 102 51-161 52-159 (257)
222 TIGR02987 met_A_Alw26 type II 98.4 2.3E-06 4.9E-11 72.9 9.3 78 49-126 33-125 (524)
223 PF08123 DOT1: Histone methyla 98.4 2.6E-06 5.7E-11 63.4 8.2 113 35-155 30-156 (205)
224 PF09243 Rsm22: Mitochondrial 98.4 4.7E-06 1E-10 65.1 10.0 106 47-161 33-143 (274)
225 PF06962 rRNA_methylase: Putat 98.3 2.2E-06 4.9E-11 59.4 7.0 88 72-161 1-96 (140)
226 KOG1269 SAM-dependent methyltr 98.3 1.3E-06 2.9E-11 70.3 6.6 100 50-157 113-215 (364)
227 COG4076 Predicted RNA methylas 98.3 1.5E-06 3.2E-11 62.6 5.9 97 50-155 35-133 (252)
228 PRK11783 rlmL 23S rRNA m(2)G24 98.3 9.6E-06 2.1E-10 71.3 12.0 107 48-157 191-347 (702)
229 PRK11760 putative 23S rRNA C24 98.3 6.4E-06 1.4E-10 65.3 9.5 86 47-150 211-296 (357)
230 PF01269 Fibrillarin: Fibrilla 98.3 1.8E-05 3.8E-10 58.9 11.0 121 28-157 50-178 (229)
231 KOG3987 Uncharacterized conser 98.3 2.4E-07 5.1E-12 67.7 1.1 93 48-156 113-206 (288)
232 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.3 3.9E-06 8.4E-11 65.8 7.9 116 43-158 81-220 (283)
233 PF11968 DUF3321: Putative met 98.3 3.5E-06 7.5E-11 62.4 7.1 90 49-158 53-150 (219)
234 PF05958 tRNA_U5-meth_tr: tRNA 98.2 4E-06 8.7E-11 67.8 7.3 82 42-124 191-289 (352)
235 KOG2730 Methylase [General fun 98.2 1.6E-06 3.6E-11 63.9 4.1 74 50-124 97-176 (263)
236 COG4262 Predicted spermidine s 98.2 2.7E-05 5.8E-10 61.8 11.0 107 49-157 291-407 (508)
237 COG0357 GidB Predicted S-adeno 98.2 9.3E-06 2E-10 60.6 7.1 97 48-157 68-168 (215)
238 COG1189 Predicted rRNA methyla 98.1 2.7E-05 5.9E-10 58.4 9.2 109 36-157 67-178 (245)
239 COG3897 Predicted methyltransf 98.1 1.4E-05 2.9E-10 58.1 7.2 96 49-156 81-177 (218)
240 PF04816 DUF633: Family of unk 98.1 3.4E-05 7.3E-10 57.5 9.5 108 51-168 1-112 (205)
241 PRK10742 putative methyltransf 98.1 1.6E-05 3.5E-10 60.4 7.6 75 50-125 91-176 (250)
242 KOG2915 tRNA(1-methyladenosine 98.1 8.4E-05 1.8E-09 56.8 10.6 108 35-155 93-207 (314)
243 KOG4589 Cell division protein 98.0 5.8E-05 1.3E-09 54.5 9.1 102 49-162 71-189 (232)
244 KOG2798 Putative trehalase [Ca 98.0 3.9E-05 8.5E-10 59.7 7.8 116 34-157 132-296 (369)
245 COG1889 NOP1 Fibrillarin-like 97.9 0.00027 5.8E-09 51.8 10.8 123 26-157 51-180 (231)
246 TIGR01444 fkbM_fam methyltrans 97.9 3.8E-05 8.2E-10 53.8 6.1 57 50-106 1-60 (143)
247 PF04672 Methyltransf_19: S-ad 97.9 0.0001 2.2E-09 56.7 8.6 109 49-161 70-194 (267)
248 PF13679 Methyltransf_32: Meth 97.9 0.00021 4.6E-09 50.1 9.7 70 48-119 26-105 (141)
249 KOG1122 tRNA and rRNA cytosine 97.9 0.00016 3.5E-09 58.4 9.7 118 43-161 237-375 (460)
250 PF03059 NAS: Nicotianamine sy 97.8 0.00028 6.1E-09 54.8 10.4 103 48-157 121-230 (276)
251 PF13578 Methyltransf_24: Meth 97.8 1.5E-05 3.2E-10 53.1 2.8 97 52-157 1-105 (106)
252 COG0275 Predicted S-adenosylme 97.7 0.0011 2.3E-08 51.8 12.1 85 36-120 12-103 (314)
253 COG2384 Predicted SAM-dependen 97.7 0.00056 1.2E-08 50.9 9.7 106 39-155 9-118 (226)
254 KOG3115 Methyltransferase-like 97.7 0.00011 2.3E-09 53.9 5.8 107 50-157 63-183 (249)
255 TIGR00006 S-adenosyl-methyltra 97.6 0.00038 8.2E-09 54.9 8.4 85 36-120 9-99 (305)
256 PF05971 Methyltransf_10: Prot 97.6 0.00022 4.7E-09 55.9 6.9 75 50-125 105-189 (299)
257 KOG2187 tRNA uracil-5-methyltr 97.6 0.00032 7E-09 58.2 7.7 77 29-106 360-443 (534)
258 cd00315 Cyt_C5_DNA_methylase C 97.5 0.0006 1.3E-08 53.4 8.6 74 50-127 2-76 (275)
259 KOG3201 Uncharacterized conser 97.5 5E-05 1.1E-09 53.5 2.1 108 49-163 31-146 (201)
260 KOG1562 Spermidine synthase [A 97.3 0.00064 1.4E-08 52.7 6.2 110 45-157 119-236 (337)
261 PF07091 FmrO: Ribosomal RNA m 97.3 0.00075 1.6E-08 51.3 6.5 79 45-126 104-184 (251)
262 PF11599 AviRa: RRNA methyltra 97.3 0.0029 6.3E-08 47.0 9.1 110 46-155 50-212 (246)
263 KOG4058 Uncharacterized conser 97.3 0.0022 4.7E-08 44.7 7.9 100 49-161 74-176 (199)
264 PF03141 Methyltransf_29: Puta 97.3 0.00029 6.2E-09 58.4 4.1 121 49-181 367-491 (506)
265 PF04445 SAM_MT: Putative SAM- 97.3 0.00063 1.4E-08 51.5 5.6 75 50-125 78-163 (234)
266 KOG2920 Predicted methyltransf 97.3 0.0001 2.2E-09 56.8 1.3 104 46-157 115-234 (282)
267 PF01861 DUF43: Protein of unk 97.3 0.0084 1.8E-07 45.5 11.2 101 47-155 44-147 (243)
268 KOG2793 Putative N2,N2-dimethy 97.2 0.0022 4.7E-08 49.0 7.7 105 49-161 88-203 (248)
269 PF03492 Methyltransf_7: SAM d 97.2 0.0015 3.2E-08 52.6 7.1 113 49-162 18-188 (334)
270 COG4627 Uncharacterized protei 97.2 0.00013 2.8E-09 51.1 0.6 54 102-160 36-89 (185)
271 KOG1099 SAM-dependent methyltr 97.1 0.0011 2.5E-08 49.5 5.3 104 49-161 43-167 (294)
272 KOG2198 tRNA cytosine-5-methyl 97.1 0.0048 1E-07 49.5 8.9 138 48-185 156-332 (375)
273 PLN02668 indole-3-acetate carb 97.0 0.0053 1.2E-07 50.1 8.6 53 109-161 158-241 (386)
274 COG5459 Predicted rRNA methyla 97.0 0.0051 1.1E-07 49.0 8.1 111 48-162 114-230 (484)
275 COG0286 HsdM Type I restrictio 97.0 0.011 2.5E-07 50.0 10.5 128 30-157 168-326 (489)
276 PF02005 TRM: N2,N2-dimethylgu 97.0 0.0022 4.7E-08 52.4 6.0 98 49-157 51-154 (377)
277 KOG1596 Fibrillarin and relate 96.9 0.0059 1.3E-07 46.2 7.4 103 46-157 155-261 (317)
278 PF01795 Methyltransf_5: MraW 96.9 0.0064 1.4E-07 48.1 8.0 86 35-120 8-100 (310)
279 PF03269 DUF268: Caenorhabditi 96.9 0.0015 3.3E-08 46.2 3.9 108 49-161 3-115 (177)
280 PHA01634 hypothetical protein 96.9 0.0078 1.7E-07 40.9 7.0 45 48-92 29-73 (156)
281 COG4798 Predicted methyltransf 96.8 0.0059 1.3E-07 44.7 6.5 109 46-158 47-167 (238)
282 PF06859 Bin3: Bicoid-interact 96.8 0.00046 1E-08 45.6 0.7 44 113-157 1-44 (110)
283 COG1064 AdhP Zn-dependent alco 96.8 0.017 3.7E-07 46.3 9.5 94 47-160 166-262 (339)
284 KOG1501 Arginine N-methyltrans 96.7 0.0033 7.1E-08 51.5 5.1 57 50-106 69-128 (636)
285 COG1063 Tdh Threonine dehydrog 96.5 0.016 3.6E-07 47.0 8.3 99 50-162 171-274 (350)
286 PF00145 DNA_methylase: C-5 cy 96.5 0.0092 2E-07 47.6 6.9 72 50-127 2-75 (335)
287 COG1867 TRM1 N2,N2-dimethylgua 96.5 0.019 4.1E-07 46.2 8.1 107 39-156 44-153 (380)
288 PF07757 AdoMet_MTase: Predict 96.5 0.0025 5.5E-08 41.9 2.7 30 50-80 61-90 (112)
289 COG1565 Uncharacterized conser 96.5 0.011 2.3E-07 47.5 6.6 114 46-163 76-247 (370)
290 PF04989 CmcI: Cephalosporin h 96.5 0.019 4.1E-07 42.7 7.5 102 48-157 33-147 (206)
291 KOG0024 Sorbitol dehydrogenase 96.4 0.023 5E-07 44.9 8.1 105 49-168 171-284 (354)
292 TIGR00675 dcm DNA-methyltransf 96.4 0.014 3.1E-07 46.6 7.1 73 51-127 1-73 (315)
293 PF01555 N6_N4_Mtase: DNA meth 96.4 0.011 2.4E-07 44.4 6.2 51 36-88 181-231 (231)
294 PRK11524 putative methyltransf 96.4 0.014 3.1E-07 45.9 6.8 52 38-91 200-251 (284)
295 PRK09424 pntA NAD(P) transhydr 96.1 0.073 1.6E-06 45.3 10.2 99 47-158 164-286 (509)
296 PRK13699 putative methylase; P 96.1 0.028 6E-07 42.7 6.8 53 38-92 155-207 (227)
297 PRK01747 mnmC bifunctional tRN 96.1 0.016 3.4E-07 51.2 6.1 103 49-155 59-204 (662)
298 PRK09880 L-idonate 5-dehydroge 96.0 0.063 1.4E-06 43.3 8.9 93 48-158 170-267 (343)
299 PRK11524 putative methyltransf 95.8 0.024 5.2E-07 44.6 5.5 64 94-157 7-80 (284)
300 KOG2078 tRNA modification enzy 95.7 0.0099 2.1E-07 48.5 3.0 67 38-106 241-311 (495)
301 PF02636 Methyltransf_28: Puta 95.7 0.05 1.1E-06 42.0 6.8 44 49-92 20-72 (252)
302 KOG1227 Putative methyltransfe 95.6 0.0052 1.1E-07 47.9 1.2 90 49-151 196-289 (351)
303 PRK10458 DNA cytosine methylas 95.6 0.17 3.7E-06 42.6 10.2 78 50-127 90-183 (467)
304 PF03686 UPF0146: Uncharacteri 95.5 0.16 3.4E-06 34.7 7.8 94 46-162 13-107 (127)
305 COG0270 Dcm Site-specific DNA 95.2 0.18 3.9E-06 40.6 8.7 75 50-127 5-81 (328)
306 TIGR00027 mthyl_TIGR00027 meth 95.2 0.65 1.4E-05 36.1 11.5 117 36-159 70-199 (260)
307 KOG0822 Protein kinase inhibit 95.0 0.065 1.4E-06 45.2 5.7 101 50-157 370-478 (649)
308 COG3129 Predicted SAM-dependen 95.0 0.082 1.8E-06 40.0 5.6 75 50-125 81-165 (292)
309 PF11312 DUF3115: Protein of u 94.8 0.096 2.1E-06 41.4 6.1 109 49-159 88-244 (315)
310 KOG1253 tRNA methyltransferase 94.7 0.023 4.9E-07 47.3 2.5 97 49-156 111-215 (525)
311 PRK13699 putative methylase; P 94.7 0.076 1.7E-06 40.4 5.0 61 96-156 2-71 (227)
312 PF10237 N6-adenineMlase: Prob 94.4 0.64 1.4E-05 33.4 9.0 105 37-157 16-123 (162)
313 COG1255 Uncharacterized protei 94.3 0.94 2E-05 30.4 8.7 90 50-161 16-106 (129)
314 PF11899 DUF3419: Protein of u 94.1 0.22 4.7E-06 40.9 6.8 64 94-162 275-339 (380)
315 PF05430 Methyltransf_30: S-ad 93.9 0.043 9.3E-07 37.5 2.1 68 95-168 32-99 (124)
316 cd08283 FDH_like_1 Glutathione 93.8 0.4 8.8E-06 39.3 7.9 108 49-157 186-306 (386)
317 TIGR01202 bchC 2-desacetyl-2-h 93.7 0.68 1.5E-05 36.7 9.0 85 49-158 146-232 (308)
318 KOG2671 Putative RNA methylase 93.7 0.08 1.7E-06 42.3 3.4 110 47-157 208-354 (421)
319 cd08254 hydroxyacyl_CoA_DH 6-h 93.5 1.4 3.1E-05 35.0 10.6 92 49-158 167-264 (338)
320 COG0686 Ald Alanine dehydrogen 93.4 0.36 7.8E-06 38.3 6.6 99 50-158 170-269 (371)
321 COG4301 Uncharacterized conser 93.3 0.91 2E-05 34.9 8.3 108 49-161 80-198 (321)
322 KOG2651 rRNA adenine N-6-methy 93.3 0.2 4.2E-06 40.7 5.1 40 49-88 155-194 (476)
323 cd08237 ribitol-5-phosphate_DH 93.2 1.1 2.3E-05 36.2 9.4 92 48-159 164-258 (341)
324 TIGR03366 HpnZ_proposed putati 93.1 0.85 1.8E-05 35.6 8.6 95 47-158 120-219 (280)
325 PF00107 ADH_zinc_N: Zinc-bind 93.0 0.45 9.8E-06 32.3 6.1 86 58-160 2-92 (130)
326 TIGR00561 pntA NAD(P) transhyd 92.9 0.76 1.6E-05 39.3 8.3 97 49-158 165-285 (511)
327 PRK05786 fabG 3-ketoacyl-(acyl 92.4 2.1 4.5E-05 32.2 9.7 108 49-158 6-136 (238)
328 PF05711 TylF: Macrocin-O-meth 92.4 1.9 4.1E-05 33.3 9.2 108 49-165 76-220 (248)
329 TIGR02822 adh_fam_2 zinc-bindi 92.4 3 6.5E-05 33.4 11.0 89 48-158 166-255 (329)
330 cd08230 glucose_DH Glucose deh 92.4 0.94 2E-05 36.6 8.1 91 48-158 173-270 (355)
331 PRK05872 short chain dehydroge 92.0 3.7 8.1E-05 32.3 10.9 74 49-123 10-95 (296)
332 PF02737 3HCDH_N: 3-hydroxyacy 91.7 2.2 4.8E-05 31.1 8.6 96 51-161 2-118 (180)
333 KOG2352 Predicted spermine/spe 91.7 0.7 1.5E-05 38.8 6.5 111 50-161 298-420 (482)
334 PRK05708 2-dehydropantoate 2-r 91.6 2.5 5.4E-05 33.7 9.4 95 50-157 4-104 (305)
335 cd08239 THR_DH_like L-threonin 91.5 1.3 2.8E-05 35.5 7.9 94 48-158 164-263 (339)
336 COG3510 CmcI Cephalosporin hyd 91.4 1.8 3.9E-05 32.0 7.6 104 44-157 66-180 (237)
337 PRK08267 short chain dehydroge 91.2 4.8 0.00011 30.7 10.6 72 50-123 3-87 (260)
338 cd08281 liver_ADH_like1 Zinc-d 91.1 1.5 3.2E-05 35.8 8.0 93 49-158 193-291 (371)
339 PF10354 DUF2431: Domain of un 90.9 2.2 4.9E-05 30.7 7.8 107 53-161 2-129 (166)
340 PRK08265 short chain dehydroge 90.7 5.2 0.00011 30.7 10.4 71 49-122 7-89 (261)
341 COG0287 TyrA Prephenate dehydr 90.5 1.8 4E-05 34.0 7.6 93 50-159 5-100 (279)
342 TIGR03451 mycoS_dep_FDH mycoth 90.4 2.2 4.8E-05 34.5 8.4 94 48-158 177-277 (358)
343 COG3315 O-Methyltransferase in 90.4 3.8 8.2E-05 32.6 9.4 115 36-157 81-209 (297)
344 cd05188 MDR Medium chain reduc 90.3 2.8 6.1E-05 31.9 8.6 98 47-158 134-233 (271)
345 COG2933 Predicted SAM-dependen 90.2 1.5 3.2E-05 34.1 6.6 66 48-120 212-277 (358)
346 KOG2539 Mitochondrial/chloropl 90.2 2.7 5.9E-05 35.2 8.5 108 49-160 202-318 (491)
347 PF02086 MethyltransfD12: D12 90.1 0.58 1.2E-05 36.0 4.6 54 33-87 5-59 (260)
348 PRK09072 short chain dehydroge 89.9 5.6 0.00012 30.5 10.0 73 50-123 7-90 (263)
349 PRK07417 arogenate dehydrogena 89.7 3 6.5E-05 32.7 8.4 84 50-153 2-87 (279)
350 KOG1201 Hydroxysteroid 17-beta 89.4 4.2 9E-05 32.2 8.6 76 49-125 39-126 (300)
351 PLN02740 Alcohol dehydrogenase 88.8 6.8 0.00015 32.1 10.2 94 48-158 199-301 (381)
352 cd00401 AdoHcyase S-adenosyl-L 88.8 2.7 5.8E-05 35.1 7.6 87 47-158 201-290 (413)
353 KOG1098 Putative SAM-dependent 88.7 0.4 8.7E-06 41.4 2.9 104 44-159 42-160 (780)
354 COG1568 Predicted methyltransf 88.4 4.4 9.6E-05 31.8 8.0 102 48-158 153-261 (354)
355 PRK07819 3-hydroxybutyryl-CoA 88.3 5.2 0.00011 31.5 8.8 97 50-161 7-125 (286)
356 PF11899 DUF3419: Protein of u 87.9 2.8 6.1E-05 34.5 7.2 43 47-90 35-77 (380)
357 PLN02827 Alcohol dehydrogenase 87.8 6.8 0.00015 32.1 9.5 93 48-157 194-295 (378)
358 PTZ00357 methyltransferase; Pr 87.6 4 8.6E-05 36.3 8.0 98 50-152 703-830 (1072)
359 cd08232 idonate-5-DH L-idonate 87.3 4.9 0.00011 32.0 8.3 92 48-157 166-262 (339)
360 PRK08324 short chain dehydroge 86.6 7.2 0.00016 34.8 9.6 108 49-157 423-557 (681)
361 PRK07533 enoyl-(acyl carrier p 86.5 13 0.00028 28.5 10.2 74 49-123 11-98 (258)
362 PLN02586 probable cinnamyl alc 86.4 7.3 0.00016 31.6 8.9 94 48-158 184-279 (360)
363 PLN03154 putative allyl alcoho 86.1 6.9 0.00015 31.6 8.6 93 48-157 159-258 (348)
364 COG1748 LYS9 Saccharopine dehy 86.1 5.8 0.00013 32.8 8.0 72 50-123 3-78 (389)
365 PRK08293 3-hydroxybutyryl-CoA 86.1 6.7 0.00015 30.8 8.3 94 50-157 5-120 (287)
366 PRK10309 galactitol-1-phosphat 86.0 4.7 0.0001 32.4 7.6 93 49-158 162-261 (347)
367 PRK06035 3-hydroxyacyl-CoA deh 85.9 7.8 0.00017 30.5 8.6 90 50-154 5-118 (291)
368 PF02153 PDH: Prephenate dehyd 85.9 6.6 0.00014 30.4 8.1 77 62-157 2-79 (258)
369 cd08238 sorbose_phosphate_red 85.8 18 0.00038 30.0 11.0 95 49-156 177-287 (410)
370 PF03721 UDPG_MGDP_dh_N: UDP-g 85.8 2.9 6.2E-05 30.7 5.7 111 50-165 2-128 (185)
371 PRK07502 cyclohexadienyl dehyd 85.7 8.3 0.00018 30.6 8.7 89 50-156 8-99 (307)
372 PRK12939 short chain dehydroge 85.5 10 0.00022 28.5 9.0 72 49-121 8-92 (250)
373 TIGR00497 hsdM type I restrict 85.4 13 0.00029 31.8 10.3 109 49-157 219-355 (501)
374 cd08285 NADP_ADH NADP(H)-depen 85.3 5.6 0.00012 32.0 7.7 92 49-157 168-266 (351)
375 TIGR00518 alaDH alanine dehydr 85.2 3.5 7.6E-05 33.8 6.5 102 49-161 168-271 (370)
376 PRK09260 3-hydroxybutyryl-CoA 85.2 5.3 0.00011 31.4 7.3 94 50-157 3-117 (288)
377 PF02254 TrkA_N: TrkA-N domain 84.7 9 0.0002 25.2 8.7 87 56-157 4-96 (116)
378 PRK06522 2-dehydropantoate 2-r 84.6 14 0.00031 29.0 9.6 95 50-157 2-100 (304)
379 TIGR02818 adh_III_F_hyde S-(hy 84.4 14 0.00031 30.0 9.8 94 48-158 186-288 (368)
380 PRK05693 short chain dehydroge 84.4 15 0.00033 28.2 9.6 68 50-123 3-82 (274)
381 COG1062 AdhC Zn-dependent alco 84.4 17 0.00036 29.6 9.5 102 46-164 184-292 (366)
382 COG0569 TrkA K+ transport syst 84.2 5.8 0.00013 30.1 6.9 66 50-120 2-73 (225)
383 PRK12829 short chain dehydroge 84.0 6.8 0.00015 29.8 7.4 72 49-122 12-95 (264)
384 KOG0821 Predicted ribosomal RN 83.9 6.5 0.00014 29.9 6.7 56 50-105 53-109 (326)
385 PRK07576 short chain dehydroge 83.8 14 0.00031 28.4 9.1 72 49-121 10-94 (264)
386 PRK10083 putative oxidoreducta 83.7 10 0.00022 30.2 8.5 97 48-158 161-260 (339)
387 PF03514 GRAS: GRAS domain fam 83.6 15 0.00033 30.2 9.5 119 37-155 100-242 (374)
388 cd08277 liver_alcohol_DH_like 83.5 11 0.00024 30.6 8.8 97 48-158 185-287 (365)
389 PRK11064 wecC UDP-N-acetyl-D-m 83.4 23 0.00049 29.6 10.6 111 50-162 5-124 (415)
390 TIGR03201 dearomat_had 6-hydro 83.4 13 0.00029 29.9 9.2 41 48-88 167-208 (349)
391 KOG3924 Putative protein methy 83.2 4.7 0.0001 33.2 6.2 113 36-156 181-307 (419)
392 PRK06701 short chain dehydroge 83.1 15 0.00033 28.8 9.1 108 49-157 47-181 (290)
393 PRK12921 2-dehydropantoate 2-r 83.1 15 0.00032 29.0 9.1 94 50-156 2-101 (305)
394 cd08245 CAD Cinnamyl alcohol d 83.1 21 0.00046 28.2 10.8 91 49-157 164-256 (330)
395 cd08294 leukotriene_B4_DH_like 82.9 11 0.00025 29.7 8.5 92 48-157 144-241 (329)
396 PRK07109 short chain dehydroge 82.9 18 0.00039 29.1 9.6 73 49-122 9-94 (334)
397 cd08255 2-desacetyl-2-hydroxye 82.7 15 0.00033 28.2 8.9 90 49-157 99-190 (277)
398 PRK05808 3-hydroxybutyryl-CoA 82.7 16 0.00034 28.6 9.1 93 50-157 5-118 (282)
399 PLN02514 cinnamyl-alcohol dehy 82.4 19 0.00042 29.1 9.7 94 48-158 181-276 (357)
400 cd08234 threonine_DH_like L-th 82.2 15 0.00032 29.1 8.9 92 49-157 161-257 (334)
401 PRK07066 3-hydroxybutyryl-CoA 82.1 14 0.0003 29.8 8.5 95 49-157 8-119 (321)
402 PF01210 NAD_Gly3P_dh_N: NAD-d 81.7 8.2 0.00018 27.3 6.5 92 50-157 1-103 (157)
403 TIGR02825 B4_12hDH leukotriene 81.7 16 0.00036 28.9 9.0 92 48-157 139-237 (325)
404 PRK07530 3-hydroxybutyryl-CoA 81.6 17 0.00037 28.6 8.9 93 50-157 6-119 (292)
405 PF02558 ApbA: Ketopantoate re 81.6 9.4 0.0002 26.5 6.8 95 51-157 1-101 (151)
406 cd08300 alcohol_DH_class_III c 81.5 27 0.00059 28.4 10.5 94 48-158 187-289 (368)
407 PRK07806 short chain dehydroge 81.4 21 0.00045 26.9 9.6 108 49-157 7-134 (248)
408 PF05050 Methyltransf_21: Meth 81.2 3.8 8.3E-05 28.8 4.8 37 53-89 1-42 (167)
409 COG0677 WecC UDP-N-acetyl-D-ma 81.0 18 0.00038 30.1 8.7 111 49-166 10-137 (436)
410 PRK07890 short chain dehydroge 80.7 6.3 0.00014 29.9 6.1 73 49-122 6-91 (258)
411 PRK07677 short chain dehydroge 80.7 6.6 0.00014 29.8 6.2 72 49-121 2-86 (252)
412 PRK06139 short chain dehydroge 80.0 13 0.00027 30.0 7.8 74 49-123 8-94 (330)
413 PRK05650 short chain dehydroge 79.8 7.6 0.00017 29.9 6.3 72 50-122 2-86 (270)
414 KOG2912 Predicted DNA methylas 79.8 5.4 0.00012 32.0 5.3 72 52-124 107-189 (419)
415 cd08295 double_bond_reductase_ 79.6 24 0.00051 28.2 9.3 93 48-157 152-251 (338)
416 cd08293 PTGR2 Prostaglandin re 79.6 13 0.00029 29.7 7.9 92 49-157 156-254 (345)
417 PF04072 LCM: Leucine carboxyl 79.4 9.5 0.00021 27.8 6.4 102 36-143 65-182 (183)
418 KOG2015 NEDD8-activating compl 79.3 27 0.00059 28.2 9.0 72 50-126 42-140 (422)
419 PRK03659 glutathione-regulated 79.3 18 0.0004 31.8 9.0 92 50-157 402-498 (601)
420 COG0863 DNA modification methy 79.2 8.6 0.00019 30.1 6.6 53 38-92 214-266 (302)
421 PRK10669 putative cation:proto 79.2 35 0.00076 29.7 10.7 64 50-119 419-487 (558)
422 PRK03562 glutathione-regulated 79.2 34 0.00074 30.3 10.7 92 50-157 402-498 (621)
423 PF08484 Methyltransf_14: C-me 79.0 13 0.00028 26.7 6.7 99 36-156 57-158 (160)
424 cd05285 sorbitol_DH Sorbitol d 78.9 26 0.00057 28.0 9.4 92 49-157 164-265 (343)
425 PF05206 TRM13: Methyltransfer 78.9 4.7 0.0001 31.3 4.8 57 49-106 20-85 (259)
426 TIGR00936 ahcY adenosylhomocys 78.9 13 0.00029 30.9 7.6 90 47-160 194-285 (406)
427 PRK06130 3-hydroxybutyryl-CoA 78.9 13 0.00028 29.5 7.5 91 50-154 6-112 (311)
428 COG0604 Qor NADPH:quinone redu 78.8 21 0.00046 28.7 8.7 98 48-160 143-244 (326)
429 TIGR02819 fdhA_non_GSH formald 78.8 30 0.00066 28.6 9.8 107 49-159 187-301 (393)
430 PRK07024 short chain dehydroge 78.7 11 0.00023 28.8 6.8 72 50-122 4-87 (257)
431 PRK08340 glucose-1-dehydrogena 78.7 9.5 0.00021 29.1 6.5 72 50-122 2-85 (259)
432 cd05279 Zn_ADH1 Liver alcohol 78.4 24 0.00052 28.6 9.1 95 49-157 185-285 (365)
433 cd08261 Zn_ADH7 Alcohol dehydr 78.1 13 0.00028 29.6 7.3 95 49-157 161-258 (337)
434 PLN02178 cinnamyl-alcohol dehy 78.0 17 0.00037 29.7 8.1 94 47-158 178-274 (375)
435 PRK05476 S-adenosyl-L-homocyst 77.7 12 0.00026 31.4 7.1 89 47-160 211-302 (425)
436 cd08301 alcohol_DH_plants Plan 77.2 32 0.00069 27.9 9.5 94 48-158 188-290 (369)
437 PLN02545 3-hydroxybutyryl-CoA 77.1 20 0.00044 28.2 8.1 92 50-155 6-117 (295)
438 PRK06484 short chain dehydroge 76.7 44 0.00096 28.5 10.6 107 48-157 269-400 (520)
439 PRK08217 fabG 3-ketoacyl-(acyl 76.5 11 0.00023 28.5 6.2 73 49-122 6-91 (253)
440 cd08236 sugar_DH NAD(P)-depend 76.4 25 0.00055 28.0 8.6 92 49-157 161-258 (343)
441 PF02719 Polysacc_synt_2: Poly 76.2 8.6 0.00019 30.5 5.5 73 55-127 4-91 (293)
442 cd08233 butanediol_DH_like (2R 75.8 24 0.00052 28.3 8.4 94 48-158 173-273 (351)
443 PF01488 Shikimate_DH: Shikima 75.8 12 0.00026 25.7 5.8 72 48-123 12-85 (135)
444 cd08296 CAD_like Cinnamyl alco 75.8 25 0.00054 28.0 8.4 90 49-157 165-259 (333)
445 PRK06113 7-alpha-hydroxysteroi 75.4 24 0.00052 26.8 7.9 73 49-122 12-97 (255)
446 KOG1209 1-Acyl dihydroxyaceton 75.4 22 0.00049 27.0 7.2 73 48-125 7-93 (289)
447 cd08278 benzyl_alcohol_DH Benz 75.3 40 0.00087 27.3 9.6 92 49-157 188-285 (365)
448 PRK15001 SAM-dependent 23S rib 75.3 33 0.00072 28.3 8.9 95 50-158 47-143 (378)
449 PRK07063 short chain dehydroge 75.1 14 0.00031 28.1 6.6 73 49-122 8-95 (260)
450 TIGR02441 fa_ox_alpha_mit fatt 74.9 25 0.00054 31.9 8.8 98 49-161 336-454 (737)
451 TIGR02437 FadB fatty oxidation 74.8 30 0.00064 31.3 9.2 98 49-161 314-432 (714)
452 PRK06500 short chain dehydroge 74.4 34 0.00074 25.7 10.1 70 50-122 8-89 (249)
453 PRK09496 trkA potassium transp 74.1 21 0.00045 29.9 7.8 67 49-119 232-303 (453)
454 PRK08507 prephenate dehydrogen 73.7 25 0.00055 27.4 7.7 84 50-154 2-88 (275)
455 PRK00094 gpsA NAD(P)H-dependen 73.7 43 0.00094 26.5 9.6 91 50-156 3-104 (325)
456 PRK08306 dipicolinate synthase 73.7 33 0.00072 27.2 8.4 91 48-160 152-244 (296)
457 cd05278 FDH_like Formaldehyde 73.6 18 0.00039 28.9 7.1 92 49-157 169-267 (347)
458 KOG0023 Alcohol dehydrogenase, 73.6 27 0.00059 28.2 7.6 100 47-161 181-283 (360)
459 PLN02494 adenosylhomocysteinas 73.3 34 0.00074 29.2 8.6 88 48-159 254-343 (477)
460 cd08242 MDR_like Medium chain 73.2 43 0.00094 26.3 10.6 87 49-157 157-245 (319)
461 PRK08339 short chain dehydroge 73.1 17 0.00037 27.9 6.6 73 49-122 9-94 (263)
462 PRK11730 fadB multifunctional 72.8 35 0.00076 30.8 9.2 98 49-161 314-432 (715)
463 PRK11154 fadJ multifunctional 72.8 40 0.00086 30.4 9.5 98 49-161 310-429 (708)
464 PLN02253 xanthoxin dehydrogena 72.6 21 0.00045 27.6 7.1 73 49-122 19-103 (280)
465 PRK07985 oxidoreductase; Provi 72.1 46 0.00099 26.1 9.4 108 49-157 50-185 (294)
466 PRK08263 short chain dehydroge 72.0 43 0.00093 25.8 9.9 70 50-122 5-86 (275)
467 PF12692 Methyltransf_17: S-ad 72.0 12 0.00025 26.6 4.7 100 45-155 27-132 (160)
468 PRK07231 fabG 3-ketoacyl-(acyl 71.9 19 0.00042 27.0 6.6 72 50-122 7-90 (251)
469 cd08231 MDR_TM0436_like Hypoth 71.9 51 0.0011 26.6 10.8 94 47-157 177-280 (361)
470 TIGR00006 S-adenosyl-methyltra 71.9 5 0.00011 32.0 3.3 30 134-163 217-246 (305)
471 PRK06124 gluconate 5-dehydroge 71.7 20 0.00042 27.2 6.6 74 48-122 11-97 (256)
472 PRK05867 short chain dehydroge 71.2 17 0.00037 27.6 6.2 74 49-123 10-96 (253)
473 PRK08655 prephenate dehydrogen 71.0 42 0.00091 28.3 8.8 87 50-156 2-91 (437)
474 PRK00050 16S rRNA m(4)C1402 me 70.9 5.4 0.00012 31.7 3.4 30 134-163 213-242 (296)
475 TIGR03026 NDP-sugDHase nucleot 70.8 56 0.0012 27.2 9.5 102 50-157 2-120 (411)
476 PRK06935 2-deoxy-D-gluconate 3 70.7 25 0.00055 26.7 7.1 74 47-122 14-100 (258)
477 COG1086 Predicted nucleoside-d 70.7 22 0.00048 30.9 7.0 77 50-127 252-339 (588)
478 PF04378 RsmJ: Ribosomal RNA s 70.6 15 0.00032 28.4 5.6 98 52-158 62-165 (245)
479 PRK06249 2-dehydropantoate 2-r 70.4 49 0.0011 26.3 8.8 94 49-156 6-105 (313)
480 PRK09496 trkA potassium transp 70.3 56 0.0012 27.4 9.5 64 50-120 2-72 (453)
481 PRK07035 short chain dehydroge 70.3 18 0.00039 27.4 6.1 73 49-122 9-94 (252)
482 PRK07102 short chain dehydroge 69.4 17 0.00037 27.4 5.8 71 50-121 3-84 (243)
483 PRK07454 short chain dehydroge 69.4 22 0.00048 26.6 6.4 73 49-122 7-92 (241)
484 COG1893 ApbA Ketopantoate redu 69.2 53 0.0012 26.2 8.7 94 50-157 2-101 (307)
485 PRK05225 ketol-acid reductoiso 69.2 9.4 0.0002 32.3 4.5 87 49-157 37-131 (487)
486 TIGR02632 RhaD_aldol-ADH rhamn 69.0 60 0.0013 29.1 9.8 74 49-123 415-503 (676)
487 PRK05854 short chain dehydroge 69.0 43 0.00094 26.5 8.3 74 49-123 15-103 (313)
488 COG5379 BtaA S-adenosylmethion 68.9 19 0.00041 28.7 5.8 73 78-158 294-367 (414)
489 PRK07097 gluconate 5-dehydroge 68.8 25 0.00054 26.9 6.7 74 49-123 11-97 (265)
490 cd05281 TDH Threonine dehydrog 68.8 34 0.00073 27.3 7.7 93 49-157 165-262 (341)
491 PRK12548 shikimate 5-dehydroge 68.7 51 0.0011 26.0 8.4 76 48-124 126-210 (289)
492 PRK09291 short chain dehydroge 68.6 19 0.00041 27.3 5.9 72 50-122 4-82 (257)
493 TIGR02279 PaaC-3OHAcCoADH 3-hy 68.4 12 0.00026 32.1 5.2 93 50-157 7-120 (503)
494 PRK06196 oxidoreductase; Provi 68.3 22 0.00047 28.2 6.4 71 49-123 27-109 (315)
495 PRK06172 short chain dehydroge 68.2 22 0.00049 26.8 6.3 73 49-122 8-93 (253)
496 PRK07326 short chain dehydroge 68.1 28 0.0006 25.9 6.7 70 50-121 8-90 (237)
497 PF03446 NAD_binding_2: NAD bi 68.0 18 0.0004 25.6 5.4 93 50-162 3-99 (163)
498 TIGR00872 gnd_rel 6-phosphoglu 67.9 37 0.00079 26.9 7.5 88 50-155 2-91 (298)
499 PRK07774 short chain dehydroge 67.7 22 0.00048 26.8 6.1 73 49-122 7-92 (250)
500 PRK06200 2,3-dihydroxy-2,3-dih 67.6 31 0.00068 26.3 7.0 72 49-123 7-90 (263)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.86 E-value=9.4e-21 Score=142.39 Aligned_cols=123 Identities=23% Similarity=0.369 Sum_probs=104.4
Q ss_pred ccCHHHHH-HhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc
Q 028547 33 YPSLAPLI-KLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE 108 (207)
Q Consensus 33 ~~~~~~~l-~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~ 108 (207)
+..+.+.+ ......++.+|||+|||||.++..+++.. ..+++++|+|+.|++.++++..+. .+++|+.+|+.++ |
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-P 114 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL-P 114 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-C
Confidence 33344433 33333345599999999999999999974 359999999999999999998753 4599999999999 8
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
+++++||+|.+...+.++ .+++.+|++++|+|||||.+++..++.+..
T Consensus 115 f~D~sFD~vt~~fglrnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 115 FPDNSFDAVTISFGLRNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred CCCCccCEEEeeehhhcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 999999999999999988 899999999999999999999999887743
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.85 E-value=3e-21 Score=146.23 Aligned_cols=111 Identities=27% Similarity=0.472 Sum_probs=85.4
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
..++.+|||+|||+|.++..+++. +. .+|+++|+|+.|++.++++... ..+++++++|+.++ |+++++||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-p~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-PFPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-cCCCCceeEEEHH
Confidence 444459999999999999999876 33 4999999999999999998763 25899999999999 7999999999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
..++.+ .+....+++++|+|||||.+++..++.+..
T Consensus 124 fglrn~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 124 FGLRNF-------PDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp S-GGG--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred hhHHhh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 889887 789999999999999999999999877754
No 3
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.85 E-value=3.7e-20 Score=138.58 Aligned_cols=140 Identities=17% Similarity=0.269 Sum_probs=108.2
Q ss_pred hchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--
Q 028547 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-- 91 (207)
Q Consensus 14 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-- 91 (207)
+||+++|......|.-......+.+.+..+...++.+|||+|||.|..+.+++++|+ +|+|+|+|+.+++.+.+...
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCC
Confidence 489999988754443233444566666654322334999999999999999999999 99999999999998644221
Q ss_pred ------------CCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 92 ------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 92 ------------~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
...++++.++|+.++.+...+.||.|+...+++++ +.......++.+.++|+|||.+++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-----~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIAL-----PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccC-----CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 12468999999999743234689999999888887 6788899999999999999987777654
No 4
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.85 E-value=5e-21 Score=135.07 Aligned_cols=154 Identities=23% Similarity=0.468 Sum_probs=120.2
Q ss_pred CCCCCCChhchhhhhcccCCcee--------eecCcc--CHHHHHHhhCC-----CCCCcEEEEcCCCchhhHHHHhcCC
Q 028547 6 TTQAYGEPWYWDNRYAHESGPFD--------WYQKYP--SLAPLIKLYVP-----SHHQRILIVGCGNSAFSEGMVDDGY 70 (207)
Q Consensus 6 ~~~~~~~~~~w~~~~~~~~~~~~--------~~~~~~--~~~~~l~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~ 70 (207)
+.+..+-++||++.|+.+...|. |+.... .+.+.+..... +...+|||+|||+|.++..+++.++
T Consensus 11 ~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf 90 (227)
T KOG1271|consen 11 GQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF 90 (227)
T ss_pred cccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC
Confidence 44556669999999998865553 877543 23333333322 2223999999999999999999987
Q ss_pred -CcEEEEeCCHHHHHHHHHHccCC--CC-ceEEEeccccccccCCCCeeEEEeCcchhhhc-cCCCChhhHHHHHHHHHH
Q 028547 71 -EDVVNVDISSVVIEAMMKKYSNR--PQ-LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL-CGSNSRQNATQMLKEVWR 145 (207)
Q Consensus 71 -~~v~~~D~s~~~i~~~~~~~~~~--~~-~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~~~~~~l~~~~~ 145 (207)
...+|+|+|+.+++.|+...+.. ++ |+|.+.|+.+. .+..+.||+|+..+++++++ ++......+...+..+.+
T Consensus 91 ~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ 169 (227)
T KOG1271|consen 91 QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEK 169 (227)
T ss_pred CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhh
Confidence 46999999999999998876633 44 99999999998 46789999999999999997 444445555788999999
Q ss_pred hcCCCcEEEEEEeCC
Q 028547 146 VLKDKGVYILVTYGA 160 (207)
Q Consensus 146 ~L~pgG~~~~~~~~~ 160 (207)
+|+|||+|+|.++.-
T Consensus 170 ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 170 LLSPGGIFVITSCNF 184 (227)
T ss_pred ccCCCcEEEEEecCc
Confidence 999999999987543
No 5
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.82 E-value=4.4e-19 Score=133.24 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=107.3
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS- 91 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~- 91 (207)
.++|+++|.+....|.-......+.+.+......++.+|||+|||.|..+.++++.|+ +|+|+|+|+.+++.+.+...
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l 81 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGL 81 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCC
Confidence 5699999998865453334444556655543222334999999999999999999999 99999999999998643211
Q ss_pred -------------CCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 92 -------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 92 -------------~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...++++.++|+.++.+.....||.|+...+++++ +......+++.+.++|+|||.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l-----~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 82 TPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL-----PEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC-----CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 12468899999999843334689999999988888 67889999999999999999766544
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.82 E-value=1.6e-19 Score=118.32 Aligned_cols=95 Identities=29% Similarity=0.569 Sum_probs=83.7
Q ss_pred EEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCC
Q 028547 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN 131 (207)
Q Consensus 52 LdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 131 (207)
||+|||+|..+..+++.+..+++++|+++.+++.++++... .++.+...|+.++ ++++++||+|++..+++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSS-SS-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhC-ccccccccccccccceeec-----
Confidence 89999999999999999445999999999999999998865 4566999999999 7999999999999999998
Q ss_pred ChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 132 SRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 132 ~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
++...+++++.|+|||||.+++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999999985
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=3.2e-19 Score=132.16 Aligned_cols=104 Identities=25% Similarity=0.379 Sum_probs=92.3
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+++|||+|||.|.++..+++.|. +|+|+|+++++|+.|+...... -++.+.+..+.++. ...++||+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 445999999999999999999996 9999999999999999887643 45678888888874 34489999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+ .++..+++.+.+++||||.+++++..
T Consensus 137 v-------~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 V-------PDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9 99999999999999999999998753
No 8
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=4.6e-19 Score=136.86 Aligned_cols=116 Identities=18% Similarity=0.339 Sum_probs=97.1
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
..++..+. ..+.+|||+|||+|.++..+++.+. +|+++|+|+++++.++++.... .+++++++|+.+..+...++
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence 34454443 3334999999999999999999876 9999999999999999887632 47899999998874456789
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
||+|++..+++++ .++..+++++.++|+|||.+++..+...
T Consensus 113 fD~V~~~~vl~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 113 VDLILFHAVLEWV-------ADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCEEEehhHHHhh-------CCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 9999999999998 7788999999999999999998776543
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=2.7e-18 Score=116.17 Aligned_cols=103 Identities=29% Similarity=0.465 Sum_probs=84.1
Q ss_pred CcEEEEcCCCchhhHHHHh--cCCCcEEEEeCCHHHHHHHHHHcc---CCCCceEEEeccccccccCCCCeeEEEeCc-c
Q 028547 49 QRILIVGCGNSAFSEGMVD--DGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG-T 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~--~~~~~v~~~D~s~~~i~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~-~ 122 (207)
.+|||+|||+|.++..+++ .+. +++++|+++.+++.++++.. ...++++++.|+ .......+.||+|++.. .
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCc
Confidence 3999999999999999999 444 99999999999999999982 337999999999 32122456799999998 4
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++++. +..+...+++++.+.|+|||.+++.+
T Consensus 81 ~~~~~----~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLL----PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCC----HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccc----chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44331 12678899999999999999999876
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.78 E-value=4.6e-18 Score=131.44 Aligned_cols=107 Identities=19% Similarity=0.345 Sum_probs=92.8
Q ss_pred CCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHcc-----CCCCceEEEeccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYS-----NRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.+|||+|||+|.++..+++. +. .+|+|+|+|++|++.++++.. ...++.++++|+.++ |+++++||+|++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~ 152 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITMG 152 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEEe
Confidence 349999999999999988875 33 489999999999999987653 124789999999988 6888999999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
.+++++ .++..++++++++|||||.+++.++..+.
T Consensus 153 ~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 153 YGLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred cccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999988 78999999999999999999999876653
No 11
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.78 E-value=6.5e-18 Score=125.48 Aligned_cols=102 Identities=22% Similarity=0.373 Sum_probs=86.6
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .++.+.+.|+.+. ++ .++||+|++..++++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~~-~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-TF-DGEYDFILSTVVLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-Cc-CCCcCEEEEecchhh
Confidence 34999999999999999999877 9999999999999998876532 4688889998876 33 467999999999887
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+ +..+...+++++.++|+|||.+++..
T Consensus 108 ~-----~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 108 L-----EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred C-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 6 45678999999999999999976544
No 12
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.78 E-value=1.3e-17 Score=124.86 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=117.3
Q ss_pred CCCChhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
.-.+.+||+++|.+....|........+.+.+.......+.+||..|||.|..+.++++.|+ +|+|+|+|+.+++.+.+
T Consensus 5 ~~~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 5 ETNNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS 83 (226)
T ss_pred ccCCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH
Confidence 33457799999999987776555555666666555433334999999999999999999999 89999999999999866
Q ss_pred Hcc--------------CCCCceEEEeccccccc--cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcE
Q 028547 89 KYS--------------NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 89 ~~~--------------~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
... ...++++.++|+.++.+ -..+.||+|+....+.++ +.+......+.+.++|+|||.
T Consensus 84 e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-----pp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 84 QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-----PNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred HcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC-----CHHHHHHHHHHHHHHhCCCcE
Confidence 321 12478999999999842 123689999999999998 778999999999999999999
Q ss_pred EEEEEeC
Q 028547 153 YILVTYG 159 (207)
Q Consensus 153 ~~~~~~~ 159 (207)
+++.++.
T Consensus 159 llll~~~ 165 (226)
T PRK13256 159 ILLLVME 165 (226)
T ss_pred EEEEEEe
Confidence 9998863
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.77 E-value=1.2e-17 Score=129.31 Aligned_cols=119 Identities=16% Similarity=0.321 Sum_probs=97.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
...++..+..++..+|||+|||+|..+..+++....+|+++|+++.+++.++++.....++.+.+.|+.+. ++++++||
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~~~~~~FD 119 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-DFPENTFD 119 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-CCCCCCeE
Confidence 45566555444445999999999999988876533499999999999999999876556799999999876 67888999
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+|++..++.|+ +..+...++++++++|+|||.+++..+..
T Consensus 120 ~V~s~~~l~h~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 120 MIYSRDAILHL-----SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEEEhhhHHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99998877776 33588999999999999999999987643
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=4.5e-18 Score=121.40 Aligned_cols=102 Identities=25% Similarity=0.492 Sum_probs=88.6
Q ss_pred CcEEEEcCCCchhhHHHHh-cCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc--cCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVD-DGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE--FQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~-~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~ 122 (207)
.+|||+|||+|.++..+++ .+. .+++|+|+++++++.+++++.. ..+++|.+.|+.++ + ++ +.||+|++..+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQELE-EKFDIIISNGV 82 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCSS-TTEEEEEEEST
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-ccccC-CCeeEEEEcCc
Confidence 4999999999999999994 432 5999999999999999997652 25899999999996 4 33 79999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
++++ .+...+++++.+.|+++|.+++..+.
T Consensus 83 l~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9988 88899999999999999999998865
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.76 E-value=1e-17 Score=134.14 Aligned_cols=106 Identities=22% Similarity=0.306 Sum_probs=92.1
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
.+.+|||+|||+|.++..+++....+|+|+|+++.+++.++++.... .++.|+++|+.+. ++++++||+|++...+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEECCch
Confidence 33599999999999999999863349999999999999998876532 4799999999987 6788999999999999
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+|+ .+...++++++++|+|||.+++.++..
T Consensus 197 ~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 197 EHM-------PDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hcc-------CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 988 788899999999999999999987643
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=4.8e-18 Score=134.15 Aligned_cols=103 Identities=17% Similarity=0.305 Sum_probs=90.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+|||+|||+|.++..+++.+. +|+|+|+++++++.++++.... .++.+++.|+.++ ++..++||+|++..+++|
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hhccCCCCEEEEhhHHHh
Confidence 4899999999999999998876 9999999999999999875421 4789999999887 456789999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+ .+...+++++.++|||||.+++.+...
T Consensus 211 v-------~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 211 V-------ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9 888999999999999999999987543
No 17
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.76 E-value=2.1e-17 Score=127.39 Aligned_cols=102 Identities=23% Similarity=0.352 Sum_probs=89.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
..+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.. ...++++|+.++ ++++++||+|+++.++++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~-~~~~~~fD~V~s~~~l~~~- 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA---ADHYLAGDIESL-PLATATFDLAWSNLAVQWC- 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---CCCEEEcCcccC-cCCCCcEEEEEECchhhhc-
Confidence 34999999999999999988765 99999999999999988753 357889999887 5778899999999999987
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.++..++.++.++|+|||.+++.++...
T Consensus 117 ------~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 117 ------GNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred ------CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 7889999999999999999999886553
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.75 E-value=2.9e-17 Score=121.82 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=84.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.... -++.+...|+... ++ .++||+|++..++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA-AL-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc-cc-cCCCCEEEEeccccc
Confidence 345999999999999999999887 9999999999999998776432 2467777777654 33 357999999988887
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+ +..+...++++++++|+|||.+++..
T Consensus 107 ~-----~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 107 L-----QAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred C-----CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 6 44678899999999999999976654
No 19
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.75 E-value=2.9e-17 Score=119.86 Aligned_cols=102 Identities=25% Similarity=0.420 Sum_probs=84.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-CCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.++||+|||.|+.+.++++.|+ .|+++|.|+.+++.+++... ..-+++..+.|+.+.. + .+.||+|++..+++++
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~-~~~yD~I~st~v~~fL- 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-F-PEEYDFIVSTVVFMFL- 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS---TTTEEEEEEESSGGGS-
T ss_pred CcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-c-cCCcCEEEEEEEeccC-
Confidence 4999999999999999999999 99999999999998877654 2245889999998874 4 4789999998888887
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+..+.+++++.+.++|||.+++.++
T Consensus 108 ----~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 108 ----QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -----GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 667889999999999999999988664
No 20
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.75 E-value=1e-17 Score=121.02 Aligned_cols=138 Identities=20% Similarity=0.348 Sum_probs=98.9
Q ss_pred hhchhhhhcccCCceeeecC-ccC--HHHHHHhhCCCCC-CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 13 PWYWDNRYAHESGPFDWYQK-YPS--LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~-~~~--~~~~l~~~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
.++|++.+.+. +.|.+... ++. ....+...++... .++||+|||.|.++..++.. +..++++|+++.+++.+++
T Consensus 6 ~~~l~~~la~~-DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~ 83 (201)
T PF05401_consen 6 YQLLNRELAND-DPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARE 83 (201)
T ss_dssp HHHHHHHHTSS-SGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHH
Confidence 34566655544 44433211 221 2334443334332 49999999999999999998 5699999999999999999
Q ss_pred HccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 89 KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 89 ~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+....+++.+.+.|+.+.. +.++||+|+++.+++++ .+.++...++.++...|+|||.+++.+.
T Consensus 84 Rl~~~~~V~~~~~dvp~~~--P~~~FDLIV~SEVlYYL----~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 84 RLAGLPHVEWIQADVPEFW--PEGRFDLIVLSEVLYYL----DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcCCCCCeEEEECcCCCCC--CCCCeeEEEEehHhHcC----CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9998889999999998874 78999999999999998 2235788999999999999999999875
No 21
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.75 E-value=8.5e-18 Score=126.03 Aligned_cols=141 Identities=23% Similarity=0.400 Sum_probs=110.3
Q ss_pred ChhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc
Q 028547 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 12 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~ 91 (207)
+.+||+++|.+....|+.......+.+.+.....+.+.+||..|||.|..+.++++.|+ +|+|+|+|+.+++.+.+...
T Consensus 2 ~~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~ 80 (218)
T PF05724_consen 2 DPEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENN 80 (218)
T ss_dssp HHHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCT
T ss_pred CHHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhc
Confidence 36799999999988888777777788888774444444999999999999999999998 99999999999999843221
Q ss_pred --------------CCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 92 --------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 92 --------------~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...++.+.++|+.++.+-..++||+|+-...+.++ +++......+.+.++|+|||.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al-----pp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 81 LEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL-----PPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp TEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred cCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC-----CHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11367899999999854344689999999999998 78899999999999999999955555
Q ss_pred e
Q 028547 158 Y 158 (207)
Q Consensus 158 ~ 158 (207)
+
T Consensus 156 l 156 (218)
T PF05724_consen 156 L 156 (218)
T ss_dssp E
T ss_pred E
Confidence 3
No 22
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=3.5e-17 Score=126.42 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=91.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
+..++..+....+.+|||+|||+|.++..+++... .+|+|+|+|+.+++.++++ ++.++++|+.++. +.++|
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~~f 90 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK--PKPDT 90 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC--CCCCc
Confidence 34556555444445999999999999999988742 4899999999999999763 6789999998762 45789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+|+++.+++++ .+...++++++++|+|||.+++...
T Consensus 91 D~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWV-------PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhC-------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999999999998 6889999999999999999998753
No 23
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=2.4e-17 Score=126.17 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=98.4
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
..+++.+.-+++.+|||||||.|.++..+++..-.+|+|+++|+++.+.+++++... .+++++-.|..++. +.
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e~ 137 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----EP 137 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----cc
Confidence 344444444566799999999999999999984249999999999999999976632 37889999988874 34
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
||.|++.++++|+ +.+....++++++++|+|||.+++.+...+.
T Consensus 138 fDrIvSvgmfEhv-----g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 138 FDRIVSVGMFEHV-----GKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred cceeeehhhHHHh-----CcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999999999 6688999999999999999999998876655
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=1e-16 Score=122.12 Aligned_cols=115 Identities=22% Similarity=0.342 Sum_probs=93.9
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCe
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~f 114 (207)
++.....+++.+|||+|||+|.++..+++. +. .+++++|+++.+++.++++.... .++.++++|+.+. +++.++|
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~f 115 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSF 115 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCc
Confidence 333333344459999999999999999876 33 49999999999999999886532 5789999999887 5677899
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+|++...++++ .+...+++++.++|+|||.+++.+...+
T Consensus 116 D~V~~~~~l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 116 DYVTIGFGLRNV-------PDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cEEEEecccccC-------CCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 999999888887 6778999999999999999998775543
No 25
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.72 E-value=7.5e-17 Score=115.85 Aligned_cols=110 Identities=29% Similarity=0.560 Sum_probs=89.3
Q ss_pred CHHHHHHhhCC--CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCC
Q 028547 35 SLAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 35 ~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (207)
.+.+.+..+.+ +...+|||+|||+|.++..+.+.++ +++++|+++.+++. .+..+...+.... ..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~-~~~~~ 77 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVVFDNFDAQDP-PFPDG 77 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSEEEEEECHTH-HCHSS
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhhhhhhhhhhh-hcccc
Confidence 34555555442 3335999999999999999998888 99999999999888 2345555554554 35778
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+||+|++..+++|+ .++..+++++.++|+|||.+++.+....
T Consensus 78 ~fD~i~~~~~l~~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 78 SFDLIICNDVLEHL-------PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SEEEEEEESSGGGS-------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred chhhHhhHHHHhhc-------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999 7899999999999999999999997653
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=1.4e-16 Score=126.56 Aligned_cols=104 Identities=25% Similarity=0.334 Sum_probs=87.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH--Hcc-CCCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK--KYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~--~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
..+++|||+|||+|.++..++..+...|+|+|+|+.++..++. +.. ...++.|+.+|+.++ ++ .++||+|++.++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-~~~FD~V~s~~v 198 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-cCCcCEEEECCh
Confidence 3445999999999999999999887679999999998875433 222 235799999999988 45 788999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++|+ .++..+++++++.|+|||.+++.+.
T Consensus 199 l~H~-------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 199 LYHR-------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred hhcc-------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 9998 7889999999999999999998764
No 27
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.71 E-value=3.7e-17 Score=108.64 Aligned_cols=95 Identities=31% Similarity=0.573 Sum_probs=79.9
Q ss_pred EEEEcCCCchhhHHHHhcC---C-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeC-cchh
Q 028547 51 ILIVGCGNSAFSEGMVDDG---Y-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDK-GTLD 124 (207)
Q Consensus 51 vLdiG~G~G~~~~~l~~~~---~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~-~~l~ 124 (207)
|||+|||+|..+..+.+.. . .+++++|+++++++.++++.... .++++++.|+.++ +...++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-PFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-HHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-cccCCCeeEEEEcCCccC
Confidence 7999999999999998873 2 59999999999999999988532 4899999999997 5678899999994 5588
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG 151 (207)
++ +.+....+++++.++|+|||
T Consensus 80 ~~-----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-----CHHHHHHHHHHHHHHhCCCC
Confidence 88 67899999999999999998
No 28
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.71 E-value=1.4e-16 Score=125.04 Aligned_cols=101 Identities=20% Similarity=0.300 Sum_probs=86.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .++++...|+.... . .++||+|++..+++++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~l- 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMFL- 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhhC-
Confidence 3999999999999999999887 9999999999999998876532 36788888887763 3 6789999999999887
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.+....+++++.++|+|||.++++.
T Consensus 198 ----~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 ----NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred ----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 45688899999999999999977654
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=2e-16 Score=122.41 Aligned_cols=109 Identities=15% Similarity=0.303 Sum_probs=90.9
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
..++..+..+++.+|||+|||+|.++..+++... .+++++|+++.+++.++++. +++.|+..|+.++. +..+||
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~--~~~~fD 95 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ--PPQALD 95 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC--CCCCcc
Confidence 3445444334445999999999999999988642 59999999999999999876 46889999998763 456899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+++.+++++ .+...+++++.++|+|||.+++..
T Consensus 96 ~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 96 LIFANASLQWL-------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEEEccChhhC-------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999998 678899999999999999998864
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.71 E-value=2.3e-16 Score=124.13 Aligned_cols=105 Identities=24% Similarity=0.316 Sum_probs=86.4
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH---HccCCCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK---KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
...+++|||+|||+|.++..++..+...|+|+|+|+.++..++. ......++.+...++.++. . ..+||+|++.+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~g 196 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMG 196 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcc
Confidence 34445999999999999999998877689999999998876432 2233357788888888873 2 35899999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+++|+ .++...+++++++|+|||.+++.+.
T Consensus 197 vL~H~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 197 VLYHR-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hhhcc-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 99998 7889999999999999999999764
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.71 E-value=2.4e-16 Score=131.96 Aligned_cols=114 Identities=20% Similarity=0.330 Sum_probs=94.6
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEE
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
+++....+++.+|||+|||+|..+..+++....+++|+|+|+.+++.++++.... .++.|.+.|+.+. ++++++||+|
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~I 336 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK-TYPDNSFDVI 336 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC-CCCCCCEEEE
Confidence 4443333344599999999999999888763349999999999999998876533 4789999999887 5677899999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+++|+ .+...++++++++|+|||.+++.++..
T Consensus 337 ~s~~~l~h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 337 YSRDTILHI-------QDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred EECCccccc-------CCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 999999998 788999999999999999999987643
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.71 E-value=2.1e-16 Score=122.47 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=86.8
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
.+++++.-+++.+|||||||.|.++..+++. |. +|+|+++|++..+.+++++... ..+.+...|..+.. .+
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----~~ 127 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----GK 127 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC----CC
Confidence 3344444455569999999999999999998 66 9999999999999999987743 36889999988763 28
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
||.|++.+++.|+ +.++...+++++.++|+|||.+++.++.
T Consensus 128 fD~IvSi~~~Ehv-----g~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 128 FDRIVSIEMFEHV-----GRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp -SEEEEESEGGGT-----CGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred CCEEEEEechhhc-----ChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9999999999998 6789999999999999999999986643
No 33
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.70 E-value=2.3e-16 Score=117.61 Aligned_cols=98 Identities=19% Similarity=0.334 Sum_probs=83.0
Q ss_pred CcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++. +++.+.++|+.+ ++++++||+|++..+++|+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl- 118 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD--PFKDNFFDLVLTKGVLIHI- 118 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC--CCCCCCEEEEEECChhhhC-
Confidence 39999999999999999886 3359999999999999999875 357788888887 4678899999999999988
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+..+...+++++++++ ++.+++..+
T Consensus 119 ----~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 119 ----NPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ----CHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 5568899999999998 467777664
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=3.6e-16 Score=120.13 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=87.7
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhc--C-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCee
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDD--G-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~--~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (207)
....... +|||+|||+|..+..+++. . ..+++++|+|+.+++.+++++... .++.++++|+.+. ++ ..+|
T Consensus 52 ~~~~~~~-~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~D 127 (247)
T PRK15451 52 RFVQPGT-QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-AI--ENAS 127 (247)
T ss_pred HhCCCCC-EEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-CC--CCCC
Confidence 3334444 9999999999999888762 1 249999999999999999987632 4789999999886 33 3589
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+++.+++++ +..+...+++++++.|+|||.+++.+
T Consensus 128 ~vv~~~~l~~l-----~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 128 MVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EEehhhHHHhC-----CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999887 44567899999999999999999987
No 35
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.70 E-value=5.2e-17 Score=121.35 Aligned_cols=99 Identities=28% Similarity=0.455 Sum_probs=85.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----C----CceEEEeccccccccCCCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----P----QLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~----~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
++|||+|||+|.++..|++.|. +|+|+|+++++++.|++..... . ++.+.+.++.... +.||.|+|.
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccceeeeH
Confidence 4799999999999999999987 9999999999999999874322 1 3556666766663 349999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.+++|+ +++..+++.+.+.|+|+|.+++.+..
T Consensus 166 evleHV-------~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHV-------KDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHH-------hCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999999 99999999999999999999998843
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.69 E-value=5.6e-16 Score=118.35 Aligned_cols=103 Identities=25% Similarity=0.440 Sum_probs=90.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++.+. .+++++|+++.++..++++.. .++.++..|+.+. +++.++||+|++..+++++
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~-~~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKL-PLEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhC-CCCCCceeEEEEhhhhhhc-
Confidence 4899999999999999998865 478999999999999998875 3788999999987 5677899999999999988
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.+...+++++.++|+|||.+++.++...
T Consensus 112 ------~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 112 ------DDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 7889999999999999999999876443
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.69 E-value=5.2e-16 Score=113.82 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=90.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+|||+|||+|..+..++... ..+|+++|+++.+++.++++.... .+++++++|+.+.. . .++||+|+++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEEEcc---
Confidence 3499999999999999888643 259999999999999999887643 46999999999874 3 67999999864
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccccCCCCceE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNI 176 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (207)
+ .....+++.++++|+|||.+++...........-+....+|.+
T Consensus 121 -~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 121 -V-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKV 164 (187)
T ss_pred -c-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceE
Confidence 2 4567899999999999999998875443333333345557775
No 38
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.68 E-value=3.3e-16 Score=114.58 Aligned_cols=125 Identities=9% Similarity=0.124 Sum_probs=91.3
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+|||+|||+|.++..++..+. .+|+++|+++.+++.++++.... .+++++++|+.+.. ..++||+|++.. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-hh
Confidence 44999999999999999887653 48999999999999888776532 47999999998862 457899999875 33
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc-cCCCCceEEEEEEeeee
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML-RDSCSWNIKLHVIEKLV 185 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 185 (207)
+...+++.+.++|+|||.+++............+ ...+.|.+.....+...
T Consensus 120 ----------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 120 ----------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred ----------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccC
Confidence 4467888899999999999987533332222222 44445666555554443
No 39
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.68 E-value=2.6e-16 Score=114.36 Aligned_cols=110 Identities=16% Similarity=0.260 Sum_probs=96.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
..+++...-.....+|.|+|||+|..+..++++.+ +.++|+|.|++|++.|+.+. ++++|..+|+.+.. +....
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--p~~~~ 93 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--PEQPT 93 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--CCCcc
Confidence 34555544444556999999999999999999865 69999999999999998887 57899999999995 67889
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+++++.+++|+ .+...++..+...|+|||++-+.-
T Consensus 94 dllfaNAvlqWl-------pdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 94 DLLFANAVLQWL-------PDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred chhhhhhhhhhc-------cccHHHHHHHHHhhCCCceEEEEC
Confidence 999999999999 899999999999999999998854
No 40
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.67 E-value=8.3e-16 Score=114.37 Aligned_cols=110 Identities=18% Similarity=0.330 Sum_probs=93.9
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-------CCcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccccccCCC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-------YEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-------~~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~ 112 (207)
+....++||++||||..+..+.+.- .++|+++|+++.++..++++.... ..+.++++|+.++ ||++.
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-pFdd~ 176 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-PFDDD 176 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-CCCCC
Confidence 3444699999999999999888752 258999999999999999987422 3589999999999 79999
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+||...+..-+... .++++.+++++|+|||||.|.+..|+...
T Consensus 177 s~D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred cceeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 99999876655554 89999999999999999999999988766
No 41
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.67 E-value=1.5e-15 Score=116.22 Aligned_cols=105 Identities=17% Similarity=0.268 Sum_probs=87.3
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC---CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
.+.. +|||+|||+|.++..+++.. ..+++|+|+++.+++.+++++... .++.++++|+.+. ++ ..+|+|+
T Consensus 52 ~~~~-~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~d~v~ 127 (239)
T TIGR00740 52 TPDS-NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-EI--KNASMVI 127 (239)
T ss_pred CCCC-EEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-CC--CCCCEEe
Confidence 3444 99999999999999888752 248999999999999999886532 4689999999887 33 3589999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+..+++++ ...+...++++++++|+|||.+++...
T Consensus 128 ~~~~l~~~-----~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhC-----CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99999987 445778999999999999999999874
No 42
>PRK05785 hypothetical protein; Provisional
Probab=99.66 E-value=1.6e-15 Score=114.87 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.... +|||+|||+|.++..+++....+|+|+|+|++|++.++++. .++++|+.++ |+++++||+|++...++
T Consensus 50 ~~~~-~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~l-p~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 50 GRPK-KVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEAL-PFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCC-eEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhC-CCCCCCEEEEEecChhh
Confidence 3444 99999999999999998873239999999999999998752 4678899888 78999999999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCC
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDK 150 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pg 150 (207)
++ .++...+++++++|||.
T Consensus 122 ~~-------~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 AS-------DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cc-------CCHHHHHHHHHHHhcCc
Confidence 88 88999999999999993
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.66 E-value=1.6e-17 Score=110.01 Aligned_cols=95 Identities=24% Similarity=0.460 Sum_probs=62.9
Q ss_pred EEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCC--CceEEEeccccccc-cCCCCeeEEEeCcchhhhc
Q 028547 52 LIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRP--QLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 52 LdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~--~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l~~~~ 127 (207)
||+|||+|.++..+.+... .+++++|+|+.+++.+++++.... +......+..+... ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999999988833 499999999999988887766432 23334433333311 123699999999999998
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVY 153 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~ 153 (207)
+++..++++++++|+|||.|
T Consensus 80 ------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------S-HHHHHHHHTTT-TSS-EE
T ss_pred ------hhHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999986
No 44
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.65 E-value=1.7e-15 Score=115.69 Aligned_cols=115 Identities=22% Similarity=0.397 Sum_probs=94.3
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCC
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 113 (207)
++..+...+..+|||+|||+|.++..++..+. .+++++|+++.+++.+++++.. ..++.+...|+.+. ++..++
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~ 121 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-PFPDNS 121 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-CCCCCC
Confidence 44443333345999999999999999988763 6999999999999999998754 25688999999887 456788
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
||+|++...++++ .+...+++++.++|+|||.+++.....+
T Consensus 122 ~D~I~~~~~l~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 122 FDAVTIAFGLRNV-------PDIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred ccEEEEecccccC-------CCHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 9999998888877 7788999999999999999998775443
No 45
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=110.23 Aligned_cols=112 Identities=24% Similarity=0.315 Sum_probs=92.2
Q ss_pred hCCCCC-CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCce-EEEeccccccccCCCCeeEEE
Q 028547 43 YVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLK-YIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 43 ~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~-~~~~d~~~~~~~~~~~fD~v~ 118 (207)
++.+.. ..|||+|||+|..-.+.-......||++|+++.|-+.+.+.+.+. .++. |+.++..++...+++++|.|+
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence 444444 278999999999988776543459999999999999998877643 3454 889999998447899999999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+..++... +++.+.|+++.++|||||.+++......
T Consensus 151 ~TlvLCSv-------e~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 151 CTLVLCSV-------EDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred EEEEEecc-------CCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 99888876 9999999999999999999999886443
No 46
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.64 E-value=5e-15 Score=120.15 Aligned_cols=113 Identities=23% Similarity=0.365 Sum_probs=90.4
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEE
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+++.+..+++.+|||+|||+|.++..+++....+|+++|+|+++++.++++... .++.+...|..+. .++||.|+
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~-l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG-LPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-CeEEEEECchhhc----CCCCCEEE
Confidence 333333344459999999999999999886334999999999999999998754 3577777777654 36899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+..+++++ +..+...+++++.++|+|||.+++.++..+
T Consensus 234 s~~~~ehv-----g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 234 SVGMFEHV-----GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred EeCchhhC-----ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 99999987 456778999999999999999999876443
No 47
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.64 E-value=3.4e-15 Score=108.38 Aligned_cols=110 Identities=22% Similarity=0.386 Sum_probs=85.9
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCC-cEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
...+|||+|||+|.++..+++.+.. +++++|+++.+++.+++++... .+++++..|+.+. .+.++||+|+++.++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~--~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA--LPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT--CCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc--ccccceeEEEEccch
Confidence 3349999999999999999998763 7999999999999999987743 3488999998876 347899999999886
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+.- ...+......+++.+.++|+|||.++++....
T Consensus 109 ~~~--~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 109 HAG--GDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp BTT--SHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred hcc--cccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 642 01122357899999999999999998866433
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.64 E-value=7.9e-15 Score=100.75 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=80.2
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
..+|||+|||+|.++..+++... .+++++|+++.+++.++++... ..++.++..|+....+...++||.|++.....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 34999999999999999998743 5899999999999999887653 25788888887753223346899999865433
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....+++.+++.|+|||.+++..
T Consensus 100 ----------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 ----------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ----------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 34689999999999999999875
No 49
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.64 E-value=4.1e-15 Score=118.05 Aligned_cols=102 Identities=25% Similarity=0.304 Sum_probs=87.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
..+|||+|||+|.++..+++.. ..+++++|+++.+++.++++... .++.++.+|+.+. +++.++||+|++..+++++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIIEGDAEDL-PFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-cCCeEEeccHHhC-CCCCCceeEEEEcChhhhC
Confidence 3499999999999988887752 34899999999999999987643 4788999999987 5778899999999999987
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+....+++++++|+|||.+++...
T Consensus 192 -------~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 192 -------PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6778899999999999999988653
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.64 E-value=4.1e-15 Score=112.43 Aligned_cols=115 Identities=27% Similarity=0.446 Sum_probs=94.7
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
++......++.+|||+|||+|.++..+++... .+++++|+++.+++.++++.....++.+..+|+.+. ++..++||+
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~ 109 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEAL-PFEDNSFDA 109 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcC-CCCCCcEEE
Confidence 33333333445999999999999999988765 489999999999999998875335789999999887 466778999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|++...++++ .+...+++++.++|+|||.+++..+..+
T Consensus 110 i~~~~~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 110 VTIAFGLRNV-------TDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred EEEeeeeCCc-------ccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 9998888877 7788999999999999999999876544
No 51
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.63 E-value=1e-15 Score=110.40 Aligned_cols=96 Identities=25% Similarity=0.426 Sum_probs=83.2
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cccCCCCeeE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DEFQTGSFDS 116 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~ 116 (207)
+++...+++.. +|||+|||.|.++..+.+....+.+|+|++++.+..+.++ .+.++++|+.+. ..+++++||.
T Consensus 5 ~~I~~~I~pgs-rVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 5 QIIAEWIEPGS-RVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHHcCCCC-EEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccE
Confidence 34555666666 9999999999999999886555999999999999988876 678999999985 3489999999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHh
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRV 146 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 146 (207)
|+++.+++++ ..+..+++++.|+
T Consensus 79 VIlsqtLQ~~-------~~P~~vL~EmlRV 101 (193)
T PF07021_consen 79 VILSQTLQAV-------RRPDEVLEEMLRV 101 (193)
T ss_pred EehHhHHHhH-------hHHHHHHHHHHHh
Confidence 9999999999 8999999999877
No 52
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.62 E-value=3.3e-15 Score=113.23 Aligned_cols=101 Identities=18% Similarity=0.295 Sum_probs=86.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
++|||+|||+|.++..+++... .+++++|+|+.+++.+++++... .++.+...|+.+. ++ .++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehHHHHH
Confidence 3799999999999999988642 48999999999999999987532 4689999998765 33 35899999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++ .+...+++++.++|+|||.+++.++
T Consensus 79 ~~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HI-------KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hC-------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 88 6789999999999999999999875
No 53
>PRK08317 hypothetical protein; Provisional
Probab=99.62 E-value=9.8e-15 Score=111.43 Aligned_cols=105 Identities=25% Similarity=0.436 Sum_probs=89.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHcc-CCCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.. ...++.+...|+.+. ++..++||+|++..+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-PFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-CCCCCCceEEEEech
Confidence 444599999999999999998864 2589999999999999988733 235789999998876 467789999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++++ .+...+++++.++|+|||.+++..+
T Consensus 97 ~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 97 LQHL-------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hhcc-------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 9988 7889999999999999999998764
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.62 E-value=1.1e-14 Score=111.80 Aligned_cols=109 Identities=24% Similarity=0.363 Sum_probs=86.2
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHH--HHcc-CCCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM--KKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~--~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.-.+++|||||||+|.++..|+..|.+.|+|+|.+.......+ +++. ....+.++...+.++ +. .+.||+|++-+
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L-p~-~~~FDtVF~MG 190 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL-PN-LGAFDTVFSMG 190 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc-cc-cCCcCEEEEee
Confidence 3455699999999999999999999989999999997655532 2232 222344444566666 44 68899999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
++.|. .++...|+++.+.|++||.+++.+..-++
T Consensus 191 VLYHr-------r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 191 VLYHR-------RSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred ehhcc-------CCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 99998 99999999999999999999998864433
No 55
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.62 E-value=5.7e-15 Score=115.16 Aligned_cols=103 Identities=16% Similarity=0.279 Sum_probs=86.9
Q ss_pred CCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+.+|||+|||+|..+..+++. +. .+|+++|+++.+++.++++.... .++.+..+|+.++ ++++++||+|+++.++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-PVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-CCCCCceeEEEEcCcc
Confidence 349999999999988776664 33 37999999999999999876432 5788999999887 5677899999999888
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++. .+....+++++++|+|||.+++...
T Consensus 157 ~~~-------~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 157 NLS-------PDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cCC-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 876 6778899999999999999999764
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=1e-14 Score=122.22 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=92.2
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cccCCCCeeE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DEFQTGSFDS 116 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~ 116 (207)
.++..+...+..+|||+|||+|.++..+++.+. +++++|+++.+++.+++......++.+++.|+... .+++.++||+
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~ 106 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDL 106 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEE
Confidence 334333333444999999999999999998854 99999999999998876544346789999999742 2567789999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|++..+++++ +......+++++.++|+|||.+++...
T Consensus 107 I~~~~~l~~l-----~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 107 IFSNWLLMYL-----SDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred EehhhhHHhC-----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999988 445578999999999999999998753
No 57
>PRK06922 hypothetical protein; Provisional
Probab=99.62 E-value=5e-15 Score=124.67 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=89.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccc-ccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~-~~~~~~fD~v~~~~~l~~ 125 (207)
.+|||+|||+|.++..+++... .+++|+|+|+.+++.++++.... .++.++++|+.++. .+++++||+|+++.++|+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~ 499 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHE 499 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHh
Confidence 4999999999999988887543 59999999999999999876432 46788889988762 167789999999999987
Q ss_pred hccCC------CChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGS------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~------~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.... .+..+...++++++++|||||.+++...
T Consensus 500 L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 500 LFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 63211 1346889999999999999999999863
No 58
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.61 E-value=1.8e-14 Score=115.07 Aligned_cols=105 Identities=18% Similarity=0.249 Sum_probs=84.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..+++... .+++++|+++.+++.+++++... ...++...|+.+. ..+.||+|+++.++|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccCC
Confidence 4899999999999999998754 48999999999999999887643 2456777777653 35789999999988752
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..........+++++.+.|+|||.++++..
T Consensus 275 --~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 --IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred --ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 111235678999999999999999998774
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.61 E-value=2.2e-14 Score=105.12 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=85.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.... .++.+...|+.+. ..++||+|+++.++++..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCCCc
Confidence 4899999999999999999877 8999999999999999987532 4678888888765 235899999998876542
Q ss_pred cCC--------------CChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGS--------------NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~--------------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
... .+......+++++.++|+|||.+++......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 110 1122357789999999999999998875443
No 60
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.60 E-value=9.7e-15 Score=113.02 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=83.4
Q ss_pred CcEEEEcCCCch----hhHHHHhcC-----C-CcEEEEeCCHHHHHHHHHHccC--------------------------
Q 028547 49 QRILIVGCGNSA----FSEGMVDDG-----Y-EDVVNVDISSVVIEAMMKKYSN-------------------------- 92 (207)
Q Consensus 49 ~~vLdiG~G~G~----~~~~l~~~~-----~-~~v~~~D~s~~~i~~~~~~~~~-------------------------- 92 (207)
.+|+|+|||+|. ++..+++.+ . .+|+|+|+|+.+++.|++....
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~ 180 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK 180 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence 499999999995 444554432 1 3899999999999999885311
Q ss_pred ---CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 93 ---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 93 ---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..++.|.+.|+.+. +.+.++||+|+|.++++++ +......+++++++.|+|||.+++..
T Consensus 181 ~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf-----~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 181 PELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYF-----DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhC-----CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 03689999999987 4467899999999999998 55677899999999999999999855
No 61
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.60 E-value=1.9e-14 Score=112.09 Aligned_cols=106 Identities=25% Similarity=0.425 Sum_probs=82.5
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC----CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY----EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
..+...+.....+|||+|||+|.++..+++... ..++|+|+|+.+++.++++. +++.+.++|+.++ |+++++
T Consensus 76 ~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~l-p~~~~s 151 (272)
T PRK11088 76 NLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRL-PFADQS 151 (272)
T ss_pred HHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccC-CCcCCc
Confidence 334444444444899999999999998877522 27899999999999998875 4688999999887 688899
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
||+|++... ...++++.++|+|||.+++++....
T Consensus 152 fD~I~~~~~--------------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 152 LDAIIRIYA--------------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred eeEEEEecC--------------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 999997532 1235788999999999999875543
No 62
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.60 E-value=3.2e-14 Score=104.90 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.++.+|||+|||+|.++..+++... .+++++|+++.+++.++++.... .++++++.|+... . .++||+|++...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~--~-~~~~D~v~~~~~ 106 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE--L-PGKADAIFIGGS 106 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh--c-CcCCCEEEECCC
Confidence 3445999999999999999988754 49999999999999999876532 4688888887532 2 357999998754
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.. ....+++.+.+.|+|||.+++...
T Consensus 107 ~~----------~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 107 GG----------NLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred cc----------CHHHHHHHHHHhcCCCeEEEEEEe
Confidence 33 346788999999999999988653
No 63
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.60 E-value=6.1e-15 Score=100.47 Aligned_cols=108 Identities=25% Similarity=0.404 Sum_probs=86.3
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccc-ccCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~~fD~v~~~~~l~~ 125 (207)
+|||+|||+|.++..+++.+..+++++|+++..++.++.++... .++++++.|+.+.. .++.++||+|+++.++..
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~ 82 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGP 82 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTS
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCcc
Confidence 89999999999999999998459999999999999999987742 57899999999873 367899999999988864
Q ss_pred hc-cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LL-CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.. ...........+++.+.++|+|||.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 83 RSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp BTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 31 111223366889999999999999999876
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.60 E-value=8.6e-15 Score=109.15 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=84.1
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEecc-cccc-ccCCCCeeEEEeCc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDV-RQMD-EFQTGSFDSVVDKG 121 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~-~~~~-~~~~~~fD~v~~~~ 121 (207)
...+|||+|||+|.++..+++... .+++++|+++.+++.++++... ..++.++++|+ ..+. .++.++||.|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 334999999999999999988643 4899999999999999987653 25799999999 5541 15678899999864
Q ss_pred chhhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+..+... +.........++++++++|+|||.+++.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 4332200 001111357899999999999999998763
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.60 E-value=2.3e-14 Score=115.32 Aligned_cols=105 Identities=19% Similarity=0.262 Sum_probs=84.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.+++++... .++.+...|+.+. .+..+||+|+++.+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--CCCCCEEEEEECcC
Confidence 4999999999999999998764 49999999999999999887522 2578888887664 34568999999988
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|... ..+......+++.+.++|+|||.++++.
T Consensus 308 fh~~~--~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQH--ALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCc--cCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 87531 1123456789999999999999999986
No 66
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.59 E-value=1.9e-14 Score=116.21 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=103.1
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~ 91 (207)
++||...+.-.+..+.-....+.+.+.+...+.+.. +|||+|||+|.++..++.... .+++++|+|+.+++.++++..
T Consensus 218 ~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~-rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~ 296 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENG-RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA 296 (423)
T ss_pred eeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCC-EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 556665555444444322233334443333334444 999999999999998887533 489999999999999999876
Q ss_pred CC-CCceEEEeccccccccCCCCeeEEEeCcchhh------------------hccCCCChhhHHHHHHHHHHhcCCCcE
Q 028547 92 NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS------------------LLCGSNSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 92 ~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
.. .++.++++|+.+......++||+|+++.++.. +..+.++......+++.+.+.|+|||.
T Consensus 297 ~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~ 376 (423)
T PRK14966 297 DLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGF 376 (423)
T ss_pred HcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 43 47899999987652112457999999976521 111223444577888888999999999
Q ss_pred EEEEE-eCCcccccccc
Q 028547 153 YILVT-YGAPIYRLGML 168 (207)
Q Consensus 153 ~~~~~-~~~~~~~~~~~ 168 (207)
+++.. +.+.......+
T Consensus 377 lilEiG~~Q~e~V~~ll 393 (423)
T PRK14966 377 LLLEHGFDQGAAVRGVL 393 (423)
T ss_pred EEEEECccHHHHHHHHH
Confidence 87754 34444444444
No 67
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.59 E-value=6.9e-14 Score=105.38 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=82.3
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 112 (207)
..+++.+..+++.+|||+|||+|.++..+++... .+|+++|+++.+++.+++++... .+++++..|+.+.. ....
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~ 145 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLA 145 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccC
Confidence 3444444444545999999999999999988743 25999999999999999987643 57999999998753 2346
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+||+|++......+ .+.+.+.|+|||.+++..
T Consensus 146 ~fD~Ii~~~~~~~~-------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 146 PYDRIYVTAAGPKI-------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCCEEEEcCCcccc-------------cHHHHHhcCcCcEEEEEE
Confidence 89999987554433 355788999999998865
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=9.4e-14 Score=103.83 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=81.0
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
+++.+..+++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .+++++.+|+.+..+ ...+
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~ 142 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAP 142 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCC
Confidence 3344333444599999999999998888752 248999999999999999887632 358899999987532 4578
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||+|++...+.++ .+++.+.|+|||.+++..
T Consensus 143 fD~Ii~~~~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 143 FDAIIVTAAASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccEEEEccCcchh-------------hHHHHHhcCcCcEEEEEE
Confidence 9999998776654 246789999999998765
No 69
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.57 E-value=4e-14 Score=109.01 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=95.9
Q ss_pred hchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC
Q 028547 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 14 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
.+|...+......+........+...+.......+.+|||+|||+|.++..+++... .+++++|+++.+++.++++...
T Consensus 54 ~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 54 EFYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred eEeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 445544443333333222222233333333333334999999999999999998743 4999999999999999988753
Q ss_pred C--CCceEEEeccccccccCCCCeeEEEeCcchhhhc-------------------cCCCChhhHHHHHHHHHHhcCCCc
Q 028547 93 R--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL-------------------CGSNSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 93 ~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~-------------------~~~~~~~~~~~~l~~~~~~L~pgG 151 (207)
. .++.++++|+.+. ++.++||+|+++.++.... .+..+......+++++.++|+|||
T Consensus 134 ~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG 211 (251)
T TIGR03534 134 LGLDNVTFLQSDWFEP--LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGG 211 (251)
T ss_pred cCCCeEEEEECchhcc--CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCC
Confidence 2 4689999998774 4568899999987654310 001112234678999999999999
Q ss_pred EEEEEE
Q 028547 152 VYILVT 157 (207)
Q Consensus 152 ~~~~~~ 157 (207)
.+++..
T Consensus 212 ~~~~~~ 217 (251)
T TIGR03534 212 WLLLEI 217 (251)
T ss_pred EEEEEE
Confidence 999865
No 70
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.57 E-value=5.2e-14 Score=110.42 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=81.2
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCee
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (207)
.+..+..+. .+|||+|||+|.++..+++.+..+++++|+++.+++.++++.... .++.+...+... ...++||
T Consensus 152 ~l~~~~~~g-~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~~~~fD 227 (288)
T TIGR00406 152 WLEDLDLKD-KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PIEGKAD 227 (288)
T ss_pred HHHhhcCCC-CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---ccCCCce
Confidence 333443444 499999999999999998887679999999999999999987632 234455444222 3457899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+|+++...+ ....++.++.++|+|||.++++.+.
T Consensus 228 lVvan~~~~----------~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAE----------VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEEEecCHH----------HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999975543 3467899999999999999998754
No 71
>PRK14967 putative methyltransferase; Provisional
Probab=99.57 E-value=5.4e-14 Score=106.51 Aligned_cols=121 Identities=19% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~f 114 (207)
+...+......++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++.... .++.++..|+.+. .+.++|
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~f 102 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPF 102 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCe
Confidence 3344443322333499999999999999999876569999999999999998876532 3577888888764 356789
Q ss_pred eEEEeCcchhhhc--------------cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLL--------------CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~--------------~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+|+++.++..-. .+.........+++++.++|+|||.+++...
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999986543210 0111223467788999999999999998653
No 72
>PLN03075 nicotianamine synthase; Provisional
Probab=99.56 E-value=6.2e-14 Score=108.69 Aligned_cols=105 Identities=12% Similarity=0.196 Sum_probs=83.3
Q ss_pred CCCCcEEEEcCCCchhhHHH-H-hcCC-CcEEEEeCCHHHHHHHHHHccC----CCCceEEEeccccccccCCCCeeEEE
Q 028547 46 SHHQRILIVGCGNSAFSEGM-V-DDGY-EDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l-~-~~~~-~~v~~~D~s~~~i~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
..+++|+|||||.|-++..+ + .... ++++++|+++++++.|++.+.. ..+++|..+|+.+.. ...+.||+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEE
Confidence 35569999999988443333 3 3333 4899999999999999998843 157999999999863 2357899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+. +++++ ...+...+++++++.|+|||.+++-.
T Consensus 201 ~~-ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-ccccc-----ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 66655 44689999999999999999999976
No 73
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=103.82 Aligned_cols=114 Identities=23% Similarity=0.385 Sum_probs=94.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
.-|||||||+|.-+..+.+.|+ .++|+|+|+.|++.+.++-- .-.++.+|+-+..||+.++||-||+...++|+ |
T Consensus 52 ~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~---egdlil~DMG~GlpfrpGtFDg~ISISAvQWL-c 126 (270)
T KOG1541|consen 52 GLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL---EGDLILCDMGEGLPFRPGTFDGVISISAVQWL-C 126 (270)
T ss_pred cEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh---hcCeeeeecCCCCCCCCCccceEEEeeeeeee-c
Confidence 4999999999999999999987 99999999999999986421 13688889888779999999999999999887 4
Q ss_pred CC-----CChhhHHHHHHHHHHhcCCCcEEEEEEeCCccccccc
Q 028547 129 GS-----NSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGM 167 (207)
Q Consensus 129 ~~-----~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~ 167 (207)
.. .+...+..++..++.+|++|+..++..+.........
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~ 170 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDM 170 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHH
Confidence 43 3445677789999999999999999887666554443
No 74
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.56 E-value=9.1e-14 Score=103.40 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
..+.+|||+|||+|.++..++.. +. .+++++|+++.+++.+++++... .++.++.+|+.+..+...+.||.|++.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 34459999999999999988764 32 48999999999999998876532 478899899877533334689999975
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
... .....+++.+.+.|+|||.+++..
T Consensus 119 ~~~----------~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 119 GGS----------EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCc----------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 321 456788999999999999998744
No 75
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.56 E-value=7e-14 Score=109.34 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+.+|||+|||+|.++..+++... .+++++|+|+.+++.++++.... .++.+++.|+.+. ++.++||+|+++.++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCCC
Confidence 34899999999999999998743 49999999999999999987632 3689999998764 345689999998654
Q ss_pred hhh------------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSL------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~------------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
... ..+..+......+++.+.++|+|||.+++..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 221 0111223456788999999999999998865
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.55 E-value=3.5e-14 Score=105.28 Aligned_cols=114 Identities=22% Similarity=0.249 Sum_probs=85.1
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc--cCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE--FQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~--~~~~~fD~v~~~ 120 (207)
..+ +|||||||+|.++..+++..+ .+++|+|+++.+++.++++... ..|++++++|+.+..+ ++.+++|.|+++
T Consensus 16 ~~~-~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAP-LHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCc-eEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 344 999999999999999998754 5999999999999999887653 2589999999987521 345689999987
Q ss_pred cchhhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+..|... +....-....+++.++++|+|||.+++.+-..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 54333200 00011123678999999999999999887433
No 77
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=7.4e-14 Score=105.31 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=89.9
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-cCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l 123 (207)
++|||+|||+|.++..++++. ..++++||+++++.+.|+++..-. .++.+++.|+.++.+ ....+||+|+|+.++
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPy 125 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPY 125 (248)
T ss_pred CeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCC
Confidence 499999999999999999984 369999999999999999987732 689999999999733 334579999999998
Q ss_pred hhhccC-CCC----------hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCG-SNS----------RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~-~~~----------~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...... ..+ .-+.+.+++.+.++|||||.+.++.
T Consensus 126 f~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 126 FKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 765433 111 1268899999999999999999877
No 78
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.54 E-value=5.1e-14 Score=104.16 Aligned_cols=144 Identities=21% Similarity=0.297 Sum_probs=107.5
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCC---CCCCcEEEEcCCCchhhHHHHhcCC---CcEEEEeCCHHHHHHH
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVP---SHHQRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAM 86 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~i~~~ 86 (207)
..||+..|....+.| +...+-+..-+..+.+ +.+.+|||+|||.|....-+.+... -.++++|.|+.+++..
T Consensus 36 ~k~wD~fy~~~~~rF--fkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~v 113 (264)
T KOG2361|consen 36 SKYWDTFYKIHENRF--FKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELV 113 (264)
T ss_pred hhhhhhhhhhccccc--cchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHH
Confidence 668999998887665 3332222222333322 2223799999999999988888643 2799999999999999
Q ss_pred HHHccCC-CCceEEEeccccc---cccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 87 MKKYSNR-PQLKYIKMDVRQM---DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 87 ~~~~~~~-~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+++.... .++...+.|+... .+...+++|+|.+..++.++ +.+.....+++++++|||||.+++.+|+...
T Consensus 114 k~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-----~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 114 KKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-----HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEecc-----ChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 9876533 3555555666653 34567899999999999888 6688999999999999999999999987654
Q ss_pred c
Q 028547 163 Y 163 (207)
Q Consensus 163 ~ 163 (207)
.
T Consensus 189 l 189 (264)
T KOG2361|consen 189 L 189 (264)
T ss_pred H
Confidence 4
No 79
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.54 E-value=1.1e-13 Score=105.61 Aligned_cols=105 Identities=24% Similarity=0.390 Sum_probs=87.0
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+..+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... ..+.+...++.+......++||+|++..++++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 345999999999999999988865 8999999999999998876532 35677778877653234578999999988888
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+ .+...+++.+.++|+|||.+++....
T Consensus 127 ~-------~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 127 V-------PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 7 67788999999999999999987654
No 80
>PRK06202 hypothetical protein; Provisional
Probab=99.54 E-value=1.9e-13 Score=104.21 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=82.2
Q ss_pred CCcEEEEcCCCchhhHHHHh----cCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGNSAFSEGMVD----DGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~----~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+|||+|||+|.++..+++ .+. .+++|+|+++.+++.++++... .++.+...+...+ +..+++||+|+++.+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l-~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDEL-VAEGERFDVVTSNHF 138 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccc-cccCCCccEEEECCe
Confidence 34999999999999888765 233 3899999999999999887643 4677777776665 346689999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++|+ +..+...+++++.++++ |.+++.++..+
T Consensus 139 lhh~-----~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 139 LHHL-----DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred eecC-----ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 9998 33446789999999998 56666665444
No 81
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.54 E-value=1.3e-13 Score=104.14 Aligned_cols=98 Identities=22% Similarity=0.358 Sum_probs=81.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
..+|||+|||+|.++..+++.+. +++|+|++++++..++++.... .++.|.+.|+.+. + ++||+|++..+++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC-C---CCcCEEEEhhHHH
Confidence 34999999999999999998865 9999999999999999987632 3789999998876 2 7899999988887
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
++ +..+...+++++.+++++++++.+
T Consensus 131 ~~-----~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 131 HY-----PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hC-----CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 76 446788899999999887655544
No 82
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4.7e-14 Score=109.05 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=86.1
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CC--ceEEEeccccccccCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQ--LKYIKMDVRQMDEFQT 111 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~--~~~~~~d~~~~~~~~~ 111 (207)
...+.++.+..+.. +|||+|||+|.+++..++.|..+++|+|+++.+++.++.|...+ .. ++....+.... ...
T Consensus 151 lcL~~Le~~~~~g~-~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~--~~~ 227 (300)
T COG2264 151 LCLEALEKLLKKGK-TVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV--PEN 227 (300)
T ss_pred HHHHHHHHhhcCCC-EEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh--ccc
Confidence 35566777766555 99999999999999999999989999999999999999988743 11 22222333332 134
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++||+|++|=.. +-+..+...+.+.|+|||.++++..-.
T Consensus 228 ~~~DvIVANILA----------~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 228 GPFDVIVANILA----------EVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred CcccEEEehhhH----------HHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 699999998432 345788999999999999999987533
No 83
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.3e-13 Score=103.50 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=82.0
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 112 (207)
..++..+..+++.+|||+|||+|.++..+++.. . .+|+++|+++++++.+++++... .++.++++|..+.. ....
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~ 144 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENA 144 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCC
Confidence 344444444444599999999999999888763 2 49999999999999999987632 57999999988763 3567
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+||+|++......+ .+.+.+.|+|||.+++..
T Consensus 145 ~fD~I~~~~~~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccc-------------hHHHHHhhCCCcEEEEEE
Confidence 89999987554433 345677899999988854
No 84
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.53 E-value=4.7e-13 Score=100.62 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=91.6
Q ss_pred CCCChhchhhhhcccCCceeeec--CccCH-HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQ--KYPSL-APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
.|-...++...|......+.... ....+ ..++..+..++..+|||+|||+|.++..+++... +++++|+++.+++.
T Consensus 37 ~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~ 115 (212)
T PRK00312 37 LFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWE 115 (212)
T ss_pred HcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHH
Confidence 34444555555655432222111 11122 2333333334445999999999999988887754 89999999999999
Q ss_pred HHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 86 MMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 86 ~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+++++... .++.+...|..+.. ...++||+|++...+.++ .+.+.+.|+|||.+++...
T Consensus 116 a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 116 AKRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAAAPEI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccCchhh-------------hHHHHHhcCCCcEEEEEEc
Confidence 99887642 46889999986642 234789999987655443 3567899999999998764
No 85
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.53 E-value=1.3e-13 Score=103.17 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-------ccCCCCeeEE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSV 117 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~v 117 (207)
++.+|||+|||+|.++..+++.. . ..|+++|+++. ...+++.++++|+.+.. ++..++||+|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 33499999999999999998874 2 48999999881 12257899999999852 2457889999
Q ss_pred EeCcchhhhccCCCChh------hHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 118 VDKGTLDSLLCGSNSRQ------NATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+++...++. +....+ ....+++.+.++|+|||.|++..+....
T Consensus 122 ~S~~~~~~~--g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 122 MSDMAPNMS--GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred ecCCCCccC--CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 998655542 111111 1356899999999999999998876643
No 86
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.1e-13 Score=104.06 Aligned_cols=152 Identities=14% Similarity=0.222 Sum_probs=103.4
Q ss_pred CCCCCCCChhchhhhhccc-------CCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEE
Q 028547 5 TTTQAYGEPWYWDNRYAHE-------SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNV 76 (207)
Q Consensus 5 ~~~~~~~~~~~w~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~ 76 (207)
.++..+....+|....... +.-|.+..-+.--.-++..+......+|||+|||.|.++..+++..+ .+++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmv 188 (300)
T COG2813 109 ENPPPFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLV 188 (300)
T ss_pred CCCCcccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEE
Confidence 3455555666666655411 23333322222223334444334334999999999999999999875 699999
Q ss_pred eCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 77 DISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 77 D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
|++..+++.+++++..+ .+..+...|..+. .. ++||+|+++.++|.- ..-...-...+++...+.|++||-+.
T Consensus 189 Dvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~--v~-~kfd~IisNPPfh~G--~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 189 DVNARAVESARKNLAANGVENTEVWASNLYEP--VE-GKFDLIISNPPFHAG--KAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ecCHHHHHHHHHhHHHcCCCccEEEEeccccc--cc-ccccEEEeCCCccCC--cchhHHHHHHHHHHHHHhhccCCEEE
Confidence 99999999999998743 3445666666665 23 399999999999852 00011234489999999999999999
Q ss_pred EEEeCCc
Q 028547 155 LVTYGAP 161 (207)
Q Consensus 155 ~~~~~~~ 161 (207)
++..+..
T Consensus 264 iVan~~l 270 (300)
T COG2813 264 IVANRHL 270 (300)
T ss_pred EEEcCCC
Confidence 9886443
No 87
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=2.6e-13 Score=105.90 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=97.6
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhC-CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKY 90 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~ 90 (207)
..||...+......+......+.+.+.+.... ..+..+|||+|||+|.++..++.... .+++++|+++.+++.++++.
T Consensus 73 ~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred ceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 34454444433333333333333444333222 23334999999999999999988753 59999999999999999987
Q ss_pred c-C-CCCceEEEeccccccccCCCCeeEEEeCcchhhh-------------------ccCCCChhhHHHHHHHHHHhcCC
Q 028547 91 S-N-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL-------------------LCGSNSRQNATQMLKEVWRVLKD 149 (207)
Q Consensus 91 ~-~-~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~-------------------~~~~~~~~~~~~~l~~~~~~L~p 149 (207)
. . ..++.++..|+.+. ...++||+|+++.++... ..+..+......+++++.++|+|
T Consensus 153 ~~~~~~~i~~~~~d~~~~--~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~ 230 (275)
T PRK09328 153 KHGLGARVEFLQGDWFEP--LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP 230 (275)
T ss_pred HhCCCCcEEEEEccccCc--CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc
Confidence 6 2 25789999998664 245789999998665321 11122345678889999999999
Q ss_pred CcEEEEEE
Q 028547 150 KGVYILVT 157 (207)
Q Consensus 150 gG~~~~~~ 157 (207)
||.+++..
T Consensus 231 gG~l~~e~ 238 (275)
T PRK09328 231 GGWLLLEI 238 (275)
T ss_pred CCEEEEEE
Confidence 99999854
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.52 E-value=1.8e-13 Score=109.82 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=91.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccc-cccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQM-DEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~-~~~~~~~ 113 (207)
.++..+.......+||||||+|.++..++...+ ..++|+|+++.++..+.++... ..|+.++++|+..+ ..+++++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCc
Confidence 344444444334999999999999999999854 4999999999999999887653 36899999999764 3467889
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+|.|+++.+..|... ....-....+++.++++|+|||.+.+.|-.
T Consensus 193 ~D~I~lnFPdPW~Kk-rHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 193 VEKIFVHFPVPWDKK-PHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred eeEEEEeCCCCcccc-chhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 999998755443210 001112378999999999999999998743
No 89
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=4.6e-13 Score=96.20 Aligned_cols=146 Identities=16% Similarity=0.204 Sum_probs=102.2
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEE
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
.+-++++.+++|+|||+|..+++++..++ .+++++|-++++++..++|..+. +|+.++.+++.+..+ ...++|.||
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiF 107 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPSPDAIF 107 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCCCCCEEE
Confidence 44445555999999999999999996654 59999999999999998887643 799999999998743 222799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc--cCCCCceEEEEEEeeeeeeccCCCceee
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML--RDSCSWNIKLHVIEKLVVEEKSGHPIWE 196 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (207)
..+. ...+.+++.+...|+|||.+++....-.. ....+ ....++. +...+.............|.
T Consensus 108 IGGg-----------~~i~~ile~~~~~l~~ggrlV~naitlE~-~~~a~~~~~~~g~~-ei~~v~is~~~~lg~~~~~~ 174 (187)
T COG2242 108 IGGG-----------GNIEEILEAAWERLKPGGRLVANAITLET-LAKALEALEQLGGR-EIVQVQISRGKPLGGGTMFR 174 (187)
T ss_pred ECCC-----------CCHHHHHHHHHHHcCcCCeEEEEeecHHH-HHHHHHHHHHcCCc-eEEEEEeecceeccCeeEee
Confidence 8765 45689999999999999999986532221 11222 1112231 33333334444444445667
Q ss_pred eccCc
Q 028547 197 LTNPV 201 (207)
Q Consensus 197 ~~~~v 201 (207)
-.+||
T Consensus 175 ~~nPv 179 (187)
T COG2242 175 PVNPV 179 (187)
T ss_pred cCCCE
Confidence 77776
No 90
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.52 E-value=2.2e-13 Score=106.77 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=84.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+|||+|.++..++.... .+++++|+++.+++.++++.... .++.|+++|+.+. ++..+||+|+++.++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCCC
Confidence 4899999999999999998754 59999999999999999987632 2489999998774 3445899999985542
Q ss_pred hh------------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SL------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~------------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.- ..+..+......+++++.++|+|||.+++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 11 1122334578889999999999999998866
No 91
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.51 E-value=2.2e-13 Score=107.59 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=83.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+|||+|.++..++.... .+++++|+|+.+++.++++.... .++.++++|+.+. .+.++||+|+++.++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 4899999999999999988743 49999999999999999987632 3589999998764 2456899999986542
Q ss_pred hh------------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SL------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~------------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.. ..+..+......+++.+.++|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 0111233456788999999999999999865
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.51 E-value=3e-13 Score=100.45 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=82.5
Q ss_pred CHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccC
Q 028547 35 SLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 35 ~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~ 110 (207)
.+..++...+. +++.+|||+|||+|.++..+++... .+++++|+++.+++.+++++... .+++++.+|+.+..+..
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC
Confidence 34443333333 3435999999999999999886532 59999999999999999887532 57889999886531112
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
...+|.++... . .....+++++.++|+|||.+++.....
T Consensus 107 ~~~~d~v~~~~----~-------~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 107 APAPDRVCIEG----G-------RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CCCCCEEEEEC----C-------cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 23457665421 1 355788999999999999999987543
No 93
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=1.7e-13 Score=106.90 Aligned_cols=111 Identities=24% Similarity=0.305 Sum_probs=82.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~f 114 (207)
..+.+..+..+.. +|||+|||||.+++..++.|.++|+++|+++.+++.+++|...+ -..++......+ ...++|
T Consensus 151 cl~~l~~~~~~g~-~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---~~~~~~ 226 (295)
T PF06325_consen 151 CLELLEKYVKPGK-RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---LVEGKF 226 (295)
T ss_dssp HHHHHHHHSSTTS-EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC---TCCS-E
T ss_pred HHHHHHHhccCCC-EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc---cccccC
Confidence 4556666655555 99999999999999999999889999999999999999997732 122333322222 345899
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|+|+++-..+ -+..++..+.+.|+|||.++++..-.
T Consensus 227 dlvvANI~~~----------vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 227 DLVVANILAD----------VLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp EEEEEES-HH----------HHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred CEEEECCCHH----------HHHHHHHHHHHhhCCCCEEEEccccH
Confidence 9999984433 44778888999999999999987533
No 94
>PRK04266 fibrillarin; Provisional
Probab=99.51 E-value=5.9e-13 Score=100.56 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=85.1
Q ss_pred eeeecCccCHHHHHHh----hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEe
Q 028547 27 FDWYQKYPSLAPLIKL----YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM 101 (207)
Q Consensus 27 ~~~~~~~~~~~~~l~~----~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~ 101 (207)
..|......+...+.. +..+++.+|||+|||+|.++..+++.. ...|+++|+++.+++.+.++.....|+.++.+
T Consensus 48 ~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~ 127 (226)
T PRK04266 48 REWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILA 127 (226)
T ss_pred EEECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEEC
Confidence 3455544344443332 222344599999999999999998863 24899999999999988776655468999999
Q ss_pred cccccc---ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 102 DVRQMD---EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 102 d~~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.+.. ++ .++||+|++.... ......+++++.++|||||.+++..
T Consensus 128 D~~~~~~~~~l-~~~~D~i~~d~~~---------p~~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 128 DARKPERYAHV-VEKVDVIYQDVAQ---------PNQAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred CCCCcchhhhc-cccCCEEEECCCC---------hhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 987531 12 3569999964221 1233556899999999999999943
No 95
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.50 E-value=2.9e-13 Score=102.59 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=86.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-C-CceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-P-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~-~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... . ++.+...|+.+......++||+|++..++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 34999999999999999988766 7999999999999999877543 2 5888888888763222478999999999998
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+ .+...+++++.++|+|||.+++.+.
T Consensus 125 ~-------~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 125 V-------PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred C-------CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 8 7888999999999999999988764
No 96
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.50 E-value=4.3e-13 Score=103.15 Aligned_cols=109 Identities=11% Similarity=0.089 Sum_probs=82.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc-CCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF-QTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..+++... .+++++|+++.+++.+++++... +.+++++|+.+..+. ..++||+|+++.++...
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 3899999999999999887632 48999999999999999987643 368899998764221 13579999999776421
Q ss_pred -------------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 -------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 -------------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+..+.+....+++.+.++|+|||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 01112233467888888999999999998763
No 97
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.50 E-value=2.7e-13 Score=104.37 Aligned_cols=97 Identities=21% Similarity=0.213 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++... ++. +.... ...+.+||+|+++...
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~-~~~----~~~~~-~~~~~~fD~Vvani~~---- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN-GVE----LNVYL-PQGDLKADVIVANILA---- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc-CCC----ceEEE-ccCCCCcCEEEEcCcH----
Confidence 3499999999999999888887757999999999999999987642 221 10111 1112279999987433
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.....+++++.++|+|||.+++..+..
T Consensus 190 ------~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 ------NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred ------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 334678999999999999999987543
No 98
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.49 E-value=3.4e-13 Score=100.05 Aligned_cols=94 Identities=24% Similarity=0.402 Sum_probs=76.4
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cccCCCCeeEEEeCc
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DEFQTGSFDSVVDKG 121 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~v~~~~ 121 (207)
.++... +|||+|||+|.++..+++.....++++|+++++++.++++ ++.+++.|+.+. .++++++||+|+++.
T Consensus 10 ~i~~~~-~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 10 LIPPGS-RVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred hcCCCC-EEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 344444 9999999999999988776444889999999999988653 578889998763 235678999999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCC
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKD 149 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~p 149 (207)
+++++ .+...+++++.+.+++
T Consensus 84 ~l~~~-------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 84 TLQAT-------RNPEEILDEMLRVGRH 104 (194)
T ss_pred HhHcC-------cCHHHHHHHHHHhCCe
Confidence 99998 7888999998887654
No 99
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.49 E-value=5.2e-13 Score=108.22 Aligned_cols=165 Identities=39% Similarity=0.680 Sum_probs=135.6
Q ss_pred CCCCCCCCCChhchhhhhccc-CCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHH
Q 028547 3 MGTTTQAYGEPWYWDNRYAHE-SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSV 81 (207)
Q Consensus 3 m~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~ 81 (207)
|......|.+..||+.++... ...++|+..+-.+...+..++....-++|.+|||.-.++..+.+.|+..++.+|+|+-
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V 82 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSV 82 (482)
T ss_pred CcccccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHH
Confidence 345667899999999999988 5889999988777777766655443489999999999999999999999999999999
Q ss_pred HHHHHHHHcc-CCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChh---hHHHHHHHHHHhcCCCcEEEEEE
Q 028547 82 VIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ---NATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 82 ~i~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.++.+..+.. ..+-.++...|+... .+++++||+|+..+.++++.+.....- .....+.+++++|++||.++.++
T Consensus 83 ~V~~m~~~~~~~~~~~~~~~~d~~~l-~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 83 VVAAMQVRNAKERPEMQMVEMDMDQL-VFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred HHHHHHhccccCCcceEEEEecchhc-cCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 9999988764 336688999999998 689999999999999999876654333 66778899999999999999999
Q ss_pred eC--Ccccccccc
Q 028547 158 YG--APIYRLGML 168 (207)
Q Consensus 158 ~~--~~~~~~~~~ 168 (207)
+. .+..+...+
T Consensus 162 l~~~vp~~r~~e~ 174 (482)
T KOG2352|consen 162 LVQVVPQGRKPEW 174 (482)
T ss_pred eeeeccCCCCeee
Confidence 84 444444433
No 100
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=5.9e-13 Score=103.68 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=103.7
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~ 91 (207)
.+||.-.+.-....+.-......+.+.+.........+|||+|||||.++..++.... .+|+++|+|+.+++.|++|..
T Consensus 76 ~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE 155 (280)
T ss_pred CeecceeeeeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH
Confidence 3455555555544444444443344433222233331699999999999999999876 499999999999999999987
Q ss_pred CC--CCceEEEeccccccccCCCCeeEEEeCcchhh------------------hccCCCChhhHHHHHHHHHHhcCCCc
Q 028547 92 NR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS------------------LLCGSNSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 92 ~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~------------------~~~~~~~~~~~~~~l~~~~~~L~pgG 151 (207)
.. .++.++..|+.+. .. ++||+|++|.++-. +..+.++.+....++..+.+.|+|||
T Consensus 156 ~~~l~~~~~~~~dlf~~--~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g 232 (280)
T COG2890 156 RNGLVRVLVVQSDLFEP--LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGG 232 (280)
T ss_pred HcCCccEEEEeeecccc--cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCc
Confidence 53 3455666666654 23 39999999977632 11222445678899999999999999
Q ss_pred EEEEEE-eCCcccccccc
Q 028547 152 VYILVT-YGAPIYRLGML 168 (207)
Q Consensus 152 ~~~~~~-~~~~~~~~~~~ 168 (207)
.+++.. +.+.......+
T Consensus 233 ~l~le~g~~q~~~v~~~~ 250 (280)
T COG2890 233 VLILEIGLTQGEAVKALF 250 (280)
T ss_pred EEEEEECCCcHHHHHHHH
Confidence 988866 34444444555
No 101
>PRK00811 spermidine synthase; Provisional
Probab=99.48 E-value=3.7e-13 Score=105.25 Aligned_cols=111 Identities=20% Similarity=0.338 Sum_probs=85.5
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHcc-------CCCCceEEEeccccccccCCCCee
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
..+.+++||++|||+|..+..+++. +..+|+++|+++.+++.+++.+. ..++++++.+|+.+......++||
T Consensus 73 ~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 73 AHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred hCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3445569999999999999999887 44699999999999999999764 236789999999886433567899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|++...-.. +....-....+++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~---~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTDPV---GPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCCCC---CchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9998643221 11112245788999999999999998753
No 102
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.48 E-value=8e-13 Score=105.69 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=88.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+++.+|||+|||+|.++..++..+. .++|+|+++.++..+++++... .++.+.++|+.+. +.+.++||+|+++.++
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l-~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL-PLSSESVDAIATDPPY 258 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC-CcccCCCCEEEECCCC
Confidence 3445999999999999998887765 9999999999999999887632 4578999999987 5667899999998776
Q ss_pred hhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
...... .........+++++.++|+|||.+++.....
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 432110 0112346889999999999999998877544
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.48 E-value=9.3e-13 Score=86.81 Aligned_cols=101 Identities=29% Similarity=0.445 Sum_probs=83.3
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|+|+|||+|.++..+++....+++++|+++..+..+++... ...++.+...|+.+.......+||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 589999999999999988444599999999999998884322 22578999999988743356789999999988862
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
......+++.+.+.|+|+|.+++.
T Consensus 80 -----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 278899999999999999999875
No 104
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.48 E-value=7.8e-13 Score=104.82 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=84.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
++..+|||+|||+|.++..+++..+ .+++++|. +.+++.++++.... .+++++.+|+.+. +++ .+|+|++..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-SYP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-CCC--CCCEEEeEh
Confidence 3335999999999999999999864 48999997 78899988876532 4689999999875 344 369999888
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++|.+ +.+....+++++++.|+|||.+++.++
T Consensus 224 ~lh~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 88865 445567899999999999999999875
No 105
>PRK14968 putative methyltransferase; Provisional
Probab=99.48 E-value=9.2e-13 Score=97.05 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=83.6
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CC--ceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQ--LKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~--~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.++++|||+|||+|.++..++..+. +++++|+++.+++.+++++... .+ +.++..|+.+. +....||+|+++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECC
Confidence 3444899999999999999998854 9999999999999998876522 22 78888888774 3455899999986
Q ss_pred chhhh--------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSL--------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~--------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++... ..+..+......+++++.++|+|||.+++...
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 65321 01111234567889999999999999888764
No 106
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.47 E-value=7.2e-13 Score=104.63 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=79.9
Q ss_pred CcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC-C--CceEEEeccccccccCCC----CeeEEEe
Q 028547 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR-P--QLKYIKMDVRQMDEFQTG----SFDSVVD 119 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~-~--~~~~~~~d~~~~~~~~~~----~fD~v~~ 119 (207)
.+|||+|||+|..+..+++.. ..+|+++|+|+++++.+++++... + ++.++++|+.+..+.+.. ...++++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 389999999999999998874 248999999999999998886532 3 456788998874223322 2345555
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+++++ ...+...+++++++.|+|||.|++..
T Consensus 145 gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 145 GSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 5666665 56788999999999999999998744
No 107
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.46 E-value=1.6e-12 Score=94.34 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=80.5
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.+++......+.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++....+++++++|+.+. +++...||.|
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-~~~~~~~d~v 81 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-DLPKLQPYKV 81 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-CccccCCCEE
Confidence 34444433444599999999999999999985 499999999999999999886556899999999998 3555679999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHh--cCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRV--LKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~--L~pgG~~~~~~ 157 (207)
+++.+++.. ...+.++.+. +.++|.+++..
T Consensus 82 i~n~Py~~~----------~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 82 VGNLPYNIS----------TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EECCCcccH----------HHHHHHHHhcCCCcceEEEEEEH
Confidence 998776532 3334444432 34677776643
No 108
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.46 E-value=7e-13 Score=111.26 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=82.7
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+|||+|.++..++... ..+++++|+|+.+++.++++.... .++.++++|+.+. .+.++||+|+++.++.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCCCC
Confidence 489999999999999888753 359999999999999999987532 3688999998764 3456899999986543
Q ss_pred h-------------------hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 S-------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~-------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. +..+..+.+....+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 11122334566778899999999999998754
No 109
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.4e-12 Score=94.48 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=89.6
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 112 (207)
....+++.+..+++.+|||||||+|+.+..+++... +|+++|..+...+.|++++... .|+.+.++|...-.+ ...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCC
Confidence 456667776666667999999999999999999855 9999999999999999998754 579999999999743 458
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+||.|+.......+ -+.+.+.|++||.+++..-
T Consensus 138 PyD~I~Vtaaa~~v-------------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEV-------------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCC-------------CHHHHHhcccCCEEEEEEc
Confidence 99999987665543 3445788999999998763
No 110
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.46 E-value=1.6e-12 Score=98.88 Aligned_cols=95 Identities=25% Similarity=0.366 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
..+|||+|||+|.++..+++.+. .|+++|+++.+++.+++++... .++.+...|+.. ..++||+|++..+++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----ccCCcCEEEEcchhh
Confidence 34999999999999999998876 7999999999999999986532 368888888432 357899999999987
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
++ +.......++++.+.++++++
T Consensus 139 ~~-----~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 139 HY-----PQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred cC-----CHHHHHHHHHHHHhhcCCeEE
Confidence 76 446778888898887754443
No 111
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.45 E-value=1.4e-12 Score=103.06 Aligned_cols=96 Identities=19% Similarity=0.306 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-------CCceEEEeccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-------PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .++.|...|+.+. +++||+|++.
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~ 219 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCL 219 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEEc
Confidence 34999999999999999999876 9999999999999999986531 3577888887554 4689999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.+++|+ +......+++.+.+. .++|+++
T Consensus 220 ~vL~H~-----p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 220 DVLIHY-----PQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred CEEEec-----CHHHHHHHHHHHHhh-cCCEEEE
Confidence 998876 334455677777654 5555544
No 112
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.42 E-value=2.3e-12 Score=102.30 Aligned_cols=111 Identities=24% Similarity=0.289 Sum_probs=83.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc----C----C----CCceEEEeccccc---cccCC--
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS----N----R----PQLKYIKMDVRQM---DEFQT-- 111 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~----~----~----~~~~~~~~d~~~~---~~~~~-- 111 (207)
.+|||+|||-|..+......+...++|+|++...|+.|+++.. . . -...|+..|.... ..++.
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~ 143 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRS 143 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTT
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccC
Confidence 4999999999988888888877899999999999999999982 0 0 1345677776643 11233
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
..||+|-|-..+|+.. . +++....+++++...|+|||.|+.+++....
T Consensus 144 ~~FDvVScQFalHY~F-e--se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAF-E--SEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp S-EEEEEEES-GGGGG-S--SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred CCcceeehHHHHHHhc-C--CHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 5999999999999873 2 5678888999999999999999999865543
No 113
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.42 E-value=2.6e-12 Score=95.08 Aligned_cols=103 Identities=9% Similarity=0.055 Sum_probs=79.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++... .++.++++|+.+..+....+||+|+++.++..
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~- 133 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK- 133 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC-
Confidence 499999999999999876666679999999999999999987632 47899999998753223457999999988542
Q ss_pred ccCCCChhhHHHHHHHHHH--hcCCCcEEEEEEeC
Q 028547 127 LCGSNSRQNATQMLKEVWR--VLKDKGVYILVTYG 159 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~ 159 (207)
......++.+.+ +|+|++++++....
T Consensus 134 -------g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 134 -------GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -------ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 234455555554 47999998887643
No 114
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.6e-12 Score=89.93 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=110.9
Q ss_pred CCCCCCCCCChhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCH
Q 028547 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISS 80 (207)
Q Consensus 3 m~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~ 80 (207)
|+++...+..+.-+++-|+...++|.-... +..-...+....++.++|||||+|..+.++++.. ...+.+.|+++
T Consensus 2 ~~tP~~~~~~~~~f~dVYEPaEDTFlLlDa---Lekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp 78 (209)
T KOG3191|consen 2 LSTPYTIHLIRLDFSDVYEPAEDTFLLLDA---LEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP 78 (209)
T ss_pred CCCCchhhhhhhhhhhccCccchhhHHHHH---HHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH
Confidence 677777777777778888888877743221 1112222333335589999999999999998863 34788999999
Q ss_pred HHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhh--------------ccCCCChhhHHHHHHHHHH
Q 028547 81 VVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL--------------LCGSNSRQNATQMLKEVWR 145 (207)
Q Consensus 81 ~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~--------------~~~~~~~~~~~~~l~~~~~ 145 (207)
.+.+..++....+ .++..++.|+.... .+++.|+++.+.++.-- .-+.++.+-...++..+-.
T Consensus 79 ~A~~~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~ 156 (209)
T KOG3191|consen 79 EALEATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPD 156 (209)
T ss_pred HHHHHHHHHHHhcCCccceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhh
Confidence 9999988776633 56889999999863 55899999988766321 1223455668888899999
Q ss_pred hcCCCcEEEEEEe
Q 028547 146 VLKDKGVYILVTY 158 (207)
Q Consensus 146 ~L~pgG~~~~~~~ 158 (207)
+|.|.|+||+...
T Consensus 157 iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 157 ILSPRGVFYLVAL 169 (209)
T ss_pred hcCcCceEEeeeh
Confidence 9999999999885
No 115
>PHA03411 putative methyltransferase; Provisional
Probab=99.42 E-value=8.5e-12 Score=95.59 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=83.0
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..++... ..+++++|+++.+++.+++++ +++.+++.|+.+.. ...+||+|+++.++.+..
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE--SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc--ccCCCcEEEEcCCccccC
Confidence 499999999999998887753 249999999999999999875 46889999999873 356899999999988752
Q ss_pred cCCCCh-----------hh--HHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGSNSR-----------QN--ATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~~~~-----------~~--~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
...... +. ...++.....+|+|+|.+++...+.+
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 111000 11 35778888999999998877754434
No 116
>PTZ00146 fibrillarin; Provisional
Probab=99.41 E-value=4.6e-12 Score=98.04 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=85.2
Q ss_pred eeecCccCHHHHHHh----hCCCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCCCCceEEEe
Q 028547 28 DWYQKYPSLAPLIKL----YVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM 101 (207)
Q Consensus 28 ~~~~~~~~~~~~l~~----~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~ 101 (207)
.|.+..+.+.+.+.. +..++..+|||+|||+|.++..+++.- ...|+++|+++.+.+.+.+......|+.++..
T Consensus 109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~ 188 (293)
T PTZ00146 109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIE 188 (293)
T ss_pred eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEEC
Confidence 465555566655532 212333499999999999999999873 24899999999766555554443368999999
Q ss_pred cccccc--ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 102 DVRQMD--EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 102 d~~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
|+.... ....+++|+|++... + . .....++.++.++|||||.|++.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva-~-p-------dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA-Q-P-------DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC-C-c-------chHHHHHHHHHHhccCCCEEEEE
Confidence 987531 123458999998753 1 1 45566777899999999999994
No 117
>PHA03412 putative methyltransferase; Provisional
Probab=99.41 E-value=4.3e-12 Score=95.11 Aligned_cols=138 Identities=11% Similarity=0.163 Sum_probs=91.4
Q ss_pred CCCChhchhhhhccc----CCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc----CCCcEEEEeCCH
Q 028547 9 AYGEPWYWDNRYAHE----SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD----GYEDVVNVDISS 80 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~~v~~~D~s~ 80 (207)
.+.+++|--+-|... ......+.....+...+........ +|||+|||+|.++..+++. ...+++++|+++
T Consensus 8 ~~~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~~~~~g-rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~ 86 (241)
T PHA03412 8 TYEEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTIDACTSG-SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH 86 (241)
T ss_pred cHHHHHHHHhhcccccccccccCCccCCCHHHHHHHHHhccCCC-EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH
Confidence 344455544444433 2222334444444333321122334 9999999999999988874 224899999999
Q ss_pred HHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCC-----CChhhHHHHHHHHHHhcCCCcE
Q 028547 81 VVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS-----NSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~-----~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
.+++.++++. .++.+++.|+.... .+++||+|+++.++..+.... .+......+++.+.+++++|+.
T Consensus 87 ~Al~~Ar~n~---~~~~~~~~D~~~~~--~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 87 TYYKLGKRIV---PEATWINADALTTE--FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred HHHHHHHhhc---cCCEEEEcchhccc--ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999999876 35789999998763 256899999999988653222 1223466788888886666654
No 118
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.40 E-value=2.1e-12 Score=95.68 Aligned_cols=101 Identities=19% Similarity=0.323 Sum_probs=78.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.++|+|||+|..+.-+++. +.+|+++|+++.+++.+++..+.. ....+...+...+. -.+++.|+|++..++||
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhhhHHh
Confidence 38999999999777777776 669999999999999998876532 22334444444442 23789999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCc-EEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKG-VYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG-~~~~~~~~ 159 (207)
+ +.+.+++.++++||++| ++.+-.+.
T Consensus 113 F--------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 113 F--------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred h--------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 7 88999999999999866 66665554
No 119
>PRK04457 spermidine synthase; Provisional
Probab=99.37 E-value=9.2e-12 Score=96.34 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=85.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+.+++|||||||+|.++..+++..+ .+++++|+++.+++.+++++.. .++++++.+|+.+......++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3445999999999999999987643 5899999999999999998752 26789999999875322346899999752
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++.. ..........+++.+.+.|+|||++++...+.+
T Consensus 145 -~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 145 -FDGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred -CCCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 2111 111112357999999999999999998655443
No 120
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=1.2e-11 Score=102.13 Aligned_cols=114 Identities=17% Similarity=0.265 Sum_probs=85.4
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccc-cCCCCeeEEEeCc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE-FQTGSFDSVVDKG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~~fD~v~~~~ 121 (207)
..++.+|||+|||+|..+..+++... ..|+++|+++.+++.+++++... .++.+++.|+.+... +..++||.|+++.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 34445999999999999999988754 49999999999999999987643 346888999887532 2356899999876
Q ss_pred chhhhcc--CC------CCh-------hhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLC--GS------NSR-------QNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~--~~------~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+...... .. ... .....+++.+.++|+|||.++++++
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5432110 00 011 1245789999999999999999885
No 121
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=1.2e-11 Score=102.12 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=87.9
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
..++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++... .++.+.+.|+.++.....++||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 3444599999999999999888752 249999999999999999987643 468899999887632446789999987
Q ss_pred cchhhhccCCC-C-------h-------hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLCGSN-S-------R-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~~~~-~-------~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+......... + . .....++.++.+.|+|||.++++|++-
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 66543321110 1 0 145778999999999999999999754
No 122
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.35 E-value=9.1e-12 Score=96.94 Aligned_cols=112 Identities=17% Similarity=0.284 Sum_probs=83.6
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCee
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
..++.+++||++|||+|..+..+++.. ..+++++|+++.+++.+++.+.. .++++++..|..+......++||
T Consensus 68 ~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 68 FTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred hcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 334555699999999999998888775 46899999999999999987642 25688888888775333457899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|++...... +....-....+++.+.+.|+|||++++..
T Consensus 148 vIi~D~~~~~---~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 148 VIIVDSTDPV---GPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEEeCCCCC---CcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9998643211 11111235788999999999999999864
No 123
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.2e-11 Score=88.79 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+++|+|+|||||.+++-.+-.|...|+++|+++++++.++++.... .++.|+++|+.+.. ..+|.++++.++..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----CccceEEECCCCcc
Confidence 34479999999999999999999889999999999999999998754 57999999999983 56899999998876
Q ss_pred h
Q 028547 126 L 126 (207)
Q Consensus 126 ~ 126 (207)
.
T Consensus 121 ~ 121 (198)
T COG2263 121 Q 121 (198)
T ss_pred c
Confidence 5
No 124
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.34 E-value=1.1e-11 Score=107.94 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=90.4
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~ 112 (207)
...+..+. + +++|||+|||+|.++..++..|..+|+++|+|+.+++.+++++... .+++++++|+.+......+
T Consensus 530 R~~~~~~~-~-g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~ 607 (702)
T PRK11783 530 RRMIGQMA-K-GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEARE 607 (702)
T ss_pred HHHHHHhc-C-CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCC
Confidence 34444433 2 3499999999999999999987768999999999999999988632 3689999999875322256
Q ss_pred CeeEEEeCcchhhhccC----CCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 113 SFDSVVDKGTLDSLLCG----SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~----~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+||+|+++.+...-.-. .....+...++..+.++|+|||.+++.+...
T Consensus 608 ~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 608 QFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 89999998664321000 0112467788899999999999998876544
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.34 E-value=2.3e-11 Score=96.36 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=78.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 113 (207)
.+++....+++.+|||+|||+|.++..+++... ..|+++|+++++++.+++++.. ..++.++++|+.+.. ....+
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-~~~~~ 149 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-PEFAP 149 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc-cccCC
Confidence 334433333445999999999999999988642 3699999999999999987653 257889999987752 23467
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||+|++...+..+ ...+.+.|+|||.+++..
T Consensus 150 fD~Ii~~~g~~~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh-------------HHHHHHhcCCCCEEEEEe
Confidence 9999986443322 334678999999988754
No 126
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.33 E-value=6.9e-12 Score=90.12 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=70.9
Q ss_pred EEEeCCHHHHHHHHHHccC-----CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcC
Q 028547 74 VNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148 (207)
Q Consensus 74 ~~~D~s~~~i~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~ 148 (207)
+|+|+|+.|++.|+++... ..+++++++|+.++ |+++++||+|++..+++++ .+...++++++++||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcC
Confidence 4899999999999876542 14689999999998 6888899999999999988 789999999999999
Q ss_pred CCcEEEEEEeCCcc
Q 028547 149 DKGVYILVTYGAPI 162 (207)
Q Consensus 149 pgG~~~~~~~~~~~ 162 (207)
|||.+++.++..+.
T Consensus 73 pGG~l~i~d~~~~~ 86 (160)
T PLN02232 73 PGSRVSILDFNKSN 86 (160)
T ss_pred cCeEEEEEECCCCC
Confidence 99999999887654
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.33 E-value=2.5e-11 Score=94.11 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=85.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++... .++.+++.|+.... ...+.||.|++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEcC
Confidence 444599999999999999988752 248999999999999999987643 47888999987762 3445799999876
Q ss_pred chhhhccCC--------CCh-------hhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLCGS--------NSR-------QNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~~~--------~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+......-. ... .....+++.+.+.|+|||.+++++++-.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 544321000 011 1345699999999999999999986543
No 128
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=100.63 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=85.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccccc-c--CCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDE-F--QTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~-~--~~~~fD~v~~~ 120 (207)
+++|||+|||+|.++..++..+..+|+++|+++.+++.+++++... .+++++++|+.+... + ..++||+|+++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 3499999999999998877766669999999999999999987632 268899999988521 1 24689999998
Q ss_pred cchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 121 GTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 121 ~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
.+...-... .........+++.+.++|+|||.++..+++....
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~ 345 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT 345 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence 775321000 0001245666677899999999999888665543
No 129
>PLN02366 spermidine synthase
Probab=99.32 E-value=2.2e-11 Score=95.90 Aligned_cols=109 Identities=17% Similarity=0.299 Sum_probs=82.9
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccc-cCCCCeeE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDE-FQTGSFDS 116 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~-~~~~~fD~ 116 (207)
.+.+++||+||||.|..+..+++.. ..+++.+|+++.+++.+++.+.. .++++++.+|+.+... .+.++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3445699999999999999998874 35899999999999999997652 3689999999877522 23568999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
|++...-.. +....-....+++.+.+.|+|||+++..
T Consensus 169 Ii~D~~dp~---~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPV---GPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCC---CchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 998532211 1111224578899999999999999763
No 130
>PRK01581 speE spermidine synthase; Validated
Probab=99.31 E-value=2.3e-11 Score=96.62 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHc--c-------CCCCceEEEeccccccccCCCCe
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
..++++||++|||+|..+..+++.. ..+++++|+++++++.|++.. . ..++++++.+|+.+......+.|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 4445599999999999998888864 369999999999999999721 1 23689999999998644456789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+|++... +.. ...........+++.+.+.|+|||++++..
T Consensus 228 DVIIvDl~-DP~-~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFP-DPA-TELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCC-Ccc-ccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99998732 111 000122355789999999999999998764
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=2.6e-11 Score=100.70 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=84.6
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... .++.+++.|+.+....-.++||+|++..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 344599999999999999998852 359999999999999999987643 4689999999876211126899999876
Q ss_pred chhhhccCC--------CChh-------hHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 122 TLDSLLCGS--------NSRQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 122 ~l~~~~~~~--------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+........ .... ....+++.+.++|+|||.+++++++-
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 543221000 0111 23568999999999999999887643
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=3e-11 Score=100.00 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=86.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc---cCCCCeeEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE---FQTGSFDSV 117 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~---~~~~~fD~v 117 (207)
.+++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .++.+++.|+.+... ...++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 3444599999999999999988862 248999999999999999987643 578999999987621 335789999
Q ss_pred EeCcchhhhcc-CCCC-------hh-------hHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLC-GSNS-------RQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~-~~~~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+...... ...+ .. ....+++++.+.|||||.+++++++-
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 98655332210 0000 11 25788999999999999999988644
No 133
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.31 E-value=1.6e-12 Score=95.65 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=86.2
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc-cCCCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-FQTGS 113 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 113 (207)
.+.++|.......-+++||+|||||.....+-..- ..++|+|+|+.|++.+.++-.- -...+.++..+.+ ..++.
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~Y---D~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLY---DTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccch---HHHHHHHHHHHhhhccCCc
Confidence 34455544433333599999999999998888774 4999999999999999886321 1334445554422 45789
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||+|.+..++.++ -..+.++-.+...|+|||.|.+++
T Consensus 189 ~DLi~AaDVl~Yl-------G~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 189 FDLIVAADVLPYL-------GALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred ccchhhhhHHHhh-------cchhhHHHHHHHhcCCCceEEEEe
Confidence 9999999999999 788999999999999999999976
No 134
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.30 E-value=1.4e-11 Score=91.87 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=80.8
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~ 110 (207)
....+++.+..+++.+|||||||+|+.+..++.. +. ..|+++|..+...+.|++++.. ..|+.++++|.....+ .
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~ 138 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-E 138 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-G
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-c
Confidence 3455666555555569999999999999999886 32 3699999999999999999873 3589999999887643 4
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+||.|++......+ -..+.+.|++||.+++..
T Consensus 139 ~apfD~I~v~~a~~~i-------------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEI-------------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEE
T ss_pred CCCcCEEEEeeccchH-------------HHHHHHhcCCCcEEEEEE
Confidence 5789999987665533 234677899999999866
No 135
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=4.5e-11 Score=99.31 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=84.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... .++.+++.|+.+.. +.++||.|++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 344599999999999888887642 248999999999999999887643 46889999998763 456899999764
Q ss_pred chhhhcc-CC-------CChh-------hHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLC-GS-------NSRQ-------NATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~-~~-------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+...... .. ...+ ....++..+.+.|+|||.+++.+++-.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 4322110 00 0111 245789999999999999999997553
No 136
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.29 E-value=5.4e-11 Score=91.21 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=82.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
....+|+|||+|.|.++..+++..+ .+++.+|. |..++.+++ ..+++++.+|+.+ ++|. +|+++...++|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~--~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFD--PLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTT--CCSS--ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHh--hhcc--ccceeeehhhh
Confidence 3445999999999999999999865 48999997 778888887 3689999999994 4565 99999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCC--cEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDK--GVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pg--G~~~~~~~ 158 (207)
.+ +.++...+|+++++.|+|| |.+++...
T Consensus 170 ~~-----~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DW-----SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS------HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hc-----chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 87 7889999999999999999 99999874
No 137
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=2.8e-11 Score=89.77 Aligned_cols=104 Identities=14% Similarity=0.228 Sum_probs=80.3
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-------C--------------------------
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-------P-------------------------- 94 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-------~-------------------------- 94 (207)
+.+|||||.+|.++..+++.. +..+.|+||++..|+.|++.++.- .
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~ 139 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTT 139 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccc
Confidence 489999999999999999974 468999999999999999876421 0
Q ss_pred ----Cce-------EEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 95 ----QLK-------YIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 95 ----~~~-------~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
++. +...|+.+ +....||+|+|-.+--|+ .-+++.+.+..++++++++|.|||+|++.
T Consensus 140 ~~p~n~~f~~~n~vle~~dfl~---~~~~~fDiIlcLSiTkWI-HLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 140 DFPDNVWFQKENYVLESDDFLD---MIQPEFDIILCLSITKWI-HLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cCCcchhcccccEEEecchhhh---hccccccEEEEEEeeeeE-ecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 111 11122221 346689999997766655 45667789999999999999999999985
No 138
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.28 E-value=4.8e-11 Score=88.04 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-------ccCCCCeeEEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSVV 118 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~v~ 118 (207)
+.+|||+|||+|.++..++.... .+++++|+++.+ ...++.+++.|+.+.. ..+.++||+|+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 34999999999999998887642 479999999854 1246788888887641 13466899999
Q ss_pred eCcchhhhc----cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 119 DKGTLDSLL----CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 119 ~~~~l~~~~----~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+....+... .+.........+++.++++|+|||.+++..+.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 865422100 00001123578999999999999999987644
No 139
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.25 E-value=1.8e-11 Score=94.36 Aligned_cols=117 Identities=24% Similarity=0.338 Sum_probs=91.8
Q ss_pred HhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----C----CceEEEeccccc-----c
Q 028547 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----P----QLKYIKMDVRQM-----D 107 (207)
Q Consensus 41 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~----~~~~~~~d~~~~-----~ 107 (207)
..+.++.. .++++|||.|..+....+.|...++|+||++-.|+.|+++..+. . ...|+.+|.... .
T Consensus 112 ~~y~~~~~-~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 112 NLYTKRGD-DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred HHHhcccc-ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 34444444 89999999999999888888889999999999999999987632 1 367888887763 2
Q ss_pred ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 108 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++.+.+||+|-|-.++|+- + .+++....++.++++.|+|||+|+.+.....
T Consensus 191 e~~dp~fDivScQF~~HYa-F--etee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYA-F--ETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred cCCCCCcceeeeeeeEeee-e--ccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 2234459999998888864 1 2557889999999999999999999875444
No 140
>PLN02672 methionine S-methyltransferase
Probab=99.25 E-value=5.3e-11 Score=106.29 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=96.8
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCC---CCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHH
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPS---HHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~ 88 (207)
++||.-.+.-.+.-+.-......+.+.+... +. .+.+|||+|||+|.++..+++... .+++++|+|+.+++.+++
T Consensus 82 ~~F~~l~~~V~p~VLIPRpeTE~lve~L~~~-~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPEDWSFTFYEGLNRH-PDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EEecCCceeeCCCcccCchhHHHHHHHHHhc-ccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 4555555544444433333333333333221 11 124899999999999999998754 599999999999999998
Q ss_pred HccCC------------------CCceEEEeccccccccCCCCeeEEEeCcchhh------hc-----------------
Q 028547 89 KYSNR------------------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS------LL----------------- 127 (207)
Q Consensus 89 ~~~~~------------------~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~------~~----------------- 127 (207)
|.... .++.|++.|+.+...-....||+|+++.++-. +.
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 87531 36899999998763111236999999976421 00
Q ss_pred ----c----CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 128 ----C----GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 128 ----~----~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. +.++......++.++.++|+|||.+++..
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 0 13344566888888999999999998865
No 141
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.25 E-value=1.3e-10 Score=96.08 Aligned_cols=118 Identities=15% Similarity=0.242 Sum_probs=82.6
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCceE--EEeccccccc-cCCCCeeEE
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKY--IKMDVRQMDE-FQTGSFDSV 117 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~--~~~d~~~~~~-~~~~~fD~v 117 (207)
+.+.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... -.+.+ ..+|..+... ...++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 334444599999999999999988753 259999999999999999987643 12333 5556554421 145689999
Q ss_pred EeCcchhhhcc-CCCC-------h-------hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLC-GSNS-------R-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~-~~~~-------~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+...... ...+ . .....+++++.++|||||.+++++++-
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 97655443211 0001 1 125789999999999999999998754
No 142
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.24 E-value=9.4e-11 Score=97.38 Aligned_cols=99 Identities=16% Similarity=0.276 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccc---ccCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMD---EFQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~---~~~~~~fD~v~~~ 120 (207)
.++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.+++++.. ..++.|+++|+.+.. ++...+||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 333599999999999999999886 4999999999999999998753 257999999997642 1345679999987
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.+... ....++.+.+ ++|++++|++
T Consensus 375 PPr~g----------~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 375 PPRAG----------AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred cCCcC----------hHHHHHHHHh-cCCCeEEEEE
Confidence 65432 2345555555 6888877764
No 143
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.24 E-value=5.7e-11 Score=90.46 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc-----CCCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF-----QTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~-----~~~~fD~v 117 (207)
+++|||+|||+|.-+..++.. . ..+++++|++++.++.+++++... .+++++.+|+.+..+. +.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 349999999999988888764 2 259999999999999999987643 4689999999875221 14689999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.... ......+++.+.+.|+|||++++..
T Consensus 149 fiDa~----------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 149 FVDAD----------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EECCC----------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 96532 1345678899999999999988744
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.23 E-value=4.5e-11 Score=88.46 Aligned_cols=108 Identities=20% Similarity=0.292 Sum_probs=80.1
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEecccccc--ccCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~--~~~~~~fD~v~~~~~l~ 124 (207)
.+||||||.|.++..++...+ ..++|+|+....+..+.++.. ...|+.++++|+.... -++++++|.|+...+=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 899999999999999999865 599999999999988887765 4479999999999842 14568999999754333
Q ss_pred hhc-cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLL-CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.. .+....--...+++.++++|+|||.+.+.|
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 321 111112256789999999999999999988
No 145
>PRK03612 spermidine synthase; Provisional
Probab=99.23 E-value=7.7e-11 Score=99.52 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=83.2
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHc--c-------CCCCceEEEeccccccccCCCCee
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+++++|||+|||+|..+..+++... .+++++|+++++++.++++. . +.++++++..|..+......++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4445999999999999999988754 69999999999999999842 1 126789999999986333457899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+++..-... . ....-....+++.+.+.|+|||.+++..
T Consensus 376 vIi~D~~~~~~-~-~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSN-P-ALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCC-c-chhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99987432210 0 0012244678999999999999998865
No 146
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.22 E-value=1.1e-10 Score=86.19 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=81.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+.||.|+|-|+.+..++..-+.+|..+|..+..++.|++.+.. .....+.+..++++.| ...+||+|++--++.|+
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P-~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP-EEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-GGGS
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC-CCCcEeEEEehHhhccC
Confidence 49999999999999987666577999999999999999988765 2346788889998853 34799999999899988
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.++...+|+++.+.|+|+|++++-.
T Consensus 136 -----TD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 136 -----TDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp ------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 78899999999999999999999854
No 147
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.20 E-value=1.5e-10 Score=92.01 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=61.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++.... .+++|+++|+.+......+.||+|+++.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 4999999999999999999864 9999999999999999887532 57999999998763223457999998755
No 148
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.20 E-value=1.2e-10 Score=94.01 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=97.2
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEecccccccc-
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDEF- 109 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~~- 109 (207)
.....+..... +++||++-|-||.++...+..|.++|++||+|..+++.+++++.-+ ..+.|+++|+.++...
T Consensus 207 ~~R~~l~~~~~--GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 207 DNRRALGELAA--GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred HHHHHHhhhcc--CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHH
Confidence 34455555544 4599999999999999999999889999999999999999998722 4578999999997322
Q ss_pred --CCCCeeEEEeCcchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccc
Q 028547 110 --QTGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYR 164 (207)
Q Consensus 110 --~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~ 164 (207)
...+||+|+..++-..-... -+-..+...++..+.++|+|||++++.+++.....
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~ 343 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS 343 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence 34599999977543221000 01135788899999999999999999987665443
No 149
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.16 E-value=3.8e-10 Score=85.25 Aligned_cols=93 Identities=22% Similarity=0.351 Sum_probs=76.8
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
.++||||+|.|..+..++.. +.+|++.|+|+.|....+++ ..+++ +..+.. ..+.+||+|.|-++++.-
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k-----g~~vl--~~~~w~-~~~~~fDvIscLNvLDRc-- 164 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK-----GFTVL--DIDDWQ-QTDFKFDVISCLNVLDRC-- 164 (265)
T ss_pred CceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC-----CCeEE--ehhhhh-ccCCceEEEeehhhhhcc--
Confidence 48999999999999999887 45999999999998888775 33333 434432 235689999999999975
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+..+++.+++.|+|+|.++++.
T Consensus 165 -----~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 165 -----DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred -----CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 889999999999999999999876
No 150
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.16 E-value=3.6e-10 Score=82.98 Aligned_cols=119 Identities=16% Similarity=0.197 Sum_probs=89.8
Q ss_pred cCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCc-eEEEeccccc-cc
Q 028547 34 PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQL-KYIKMDVRQM-DE 108 (207)
Q Consensus 34 ~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~-~~~~~d~~~~-~~ 108 (207)
..+.++|+.+++....+|||||||||..+.++++..+ -...-.|.++..+......... .+|+ .-+..|+... ++
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 3577888888887773499999999999999999865 3777889888776555543321 1232 2334566654 22
Q ss_pred c------CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 F------QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ..++||.|++.+++|-. ++.....+++.+.++|++||.|++-.
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~-----p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHIS-----PWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred cccccccCCCCcceeeehhHHHhc-----CHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 2 35689999999999976 78899999999999999999998854
No 151
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.16 E-value=2e-09 Score=75.66 Aligned_cols=110 Identities=20% Similarity=0.324 Sum_probs=92.9
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc----ccCCCCee
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFD 115 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD 115 (207)
...+..+..|||+|.|+|-++..+...|. ..++++|.+++......+.+. .+.++.+|+.++. ......||
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---~~~ii~gda~~l~~~l~e~~gq~~D 119 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---GVNIINGDAFDLRTTLGEHKGQFFD 119 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---CccccccchhhHHHHHhhcCCCeee
Confidence 33445556999999999999999999985 699999999999999998874 4568889888763 35677899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.|+|.-++-.+ +.+...++++.+...|.+||.++-.+|+
T Consensus 120 ~viS~lPll~~-----P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 120 SVISGLPLLNF-----PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eEEeccccccC-----cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 99998777666 6678899999999999999999999887
No 152
>PLN02823 spermine synthase
Probab=99.16 E-value=4.4e-10 Score=89.55 Aligned_cols=112 Identities=20% Similarity=0.273 Sum_probs=83.6
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.+.+++||.+|+|.|..+.++++.. ..+++.+|+++..++.+++.+.. .++++++..|+.+......++||+|
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3445699999999999999888864 46899999999999999998752 3689999999999744456789999
Q ss_pred EeCcchhhhccCCCChhhHHHHHH-HHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLK-EVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~~~~~~ 157 (207)
++.. .+....+....-....+++ .+.+.|+|||++++..
T Consensus 181 i~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9763 1211001111123567787 8899999999987653
No 153
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.16 E-value=3.1e-10 Score=83.80 Aligned_cols=103 Identities=18% Similarity=0.324 Sum_probs=70.9
Q ss_pred CcEEEEcCCCc----hhhHHHHhc-----CC-CcEEEEeCCHHHHHHHHHHc-------------------c--C-C---
Q 028547 49 QRILIVGCGNS----AFSEGMVDD-----GY-EDVVNVDISSVVIEAMMKKY-------------------S--N-R--- 93 (207)
Q Consensus 49 ~~vLdiG~G~G----~~~~~l~~~-----~~-~~v~~~D~s~~~i~~~~~~~-------------------~--~-~--- 93 (207)
-+|+-.||++| .+++.+.+. +. -+++|.|+++.+++.|++-. . + .
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v 112 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRV 112 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeE
Confidence 49999999999 344444441 11 29999999999999987521 0 0 0
Q ss_pred -----CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 94 -----PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 94 -----~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+.|.+.|+.+. +.+.+.||+|+|.+++-++ +.+....+++.+++.|+|||.|++-.
T Consensus 113 ~~~lr~~V~F~~~NL~~~-~~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 113 KPELRKMVRFRRHNLLDP-DPPFGRFDLIFCRNVLIYF-----DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred ChHHcCceEEEecccCCC-CcccCCccEEEecCEEEEe-----CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 2689999999993 3467899999999999998 77889999999999999999999854
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.15 E-value=2.9e-10 Score=85.56 Aligned_cols=108 Identities=20% Similarity=0.215 Sum_probs=85.4
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc--cCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~ 124 (207)
.+||||||.|.++..+|+..+ ..++|+|+....+..+.+++... .|+++++.|+..... .++++.|-|+.+.+=-
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDP 130 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDP 130 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCC
Confidence 899999999999999999876 59999999999999988877643 499999999998632 3455999998764333
Q ss_pred hhc-cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLL-CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.. -+....--...+++.+.++|+|||.+.+.|
T Consensus 131 WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 131 WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 321 111222356889999999999999999988
No 155
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.15 E-value=1.9e-10 Score=89.94 Aligned_cols=102 Identities=24% Similarity=0.251 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
++.|||+|||+|.++.+.++.|..+|+++|.|..+ +.+.+.+..+ ..+.++++.+.+. .+|.+++|+|++--+=+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhhhH
Confidence 35999999999999999999998899999988755 7777765532 3488899988887 46778999999864444
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
+++ -+.-+...+-.--++|+|||.++=
T Consensus 139 ~Ll----~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 139 FLL----YESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHH----HhhhhhhhhhhhhhccCCCceEcc
Confidence 431 123445555555789999999764
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.15 E-value=4.6e-10 Score=87.42 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=79.6
Q ss_pred CcEEEEcCCCc----hhhHHHHhcC-----CCcEEEEeCCHHHHHHHHHHc------------------cC---------
Q 028547 49 QRILIVGCGNS----AFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKY------------------SN--------- 92 (207)
Q Consensus 49 ~~vLdiG~G~G----~~~~~l~~~~-----~~~v~~~D~s~~~i~~~~~~~------------------~~--------- 92 (207)
-+|+..||.+| .++..+.+.. .-+|+|.|+++.+++.|++-. ..
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 49999999999 3444444421 127999999999999987631 00
Q ss_pred ------CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 93 ------RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 93 ------~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...+.|.+.|+.+....+.+.||+|+|.+++.++ +.+....+++++++.|+|||.|++-.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-----DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0357899999988521236789999999999888 66889999999999999999887644
No 157
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=5.9e-11 Score=87.50 Aligned_cols=107 Identities=19% Similarity=0.283 Sum_probs=89.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
..+ .++||||+-|+....+...+..+++-+|.|-.|++.++..-...-.......|=..+ ++.+.++|+|+++..+||
T Consensus 72 ~fp-~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~L-df~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 72 SFP-TAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFL-DFKENSVDLIISSLSLHW 149 (325)
T ss_pred hCc-ceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcc-cccccchhhhhhhhhhhh
Confidence 344 899999999999999999988899999999999999876422112234455665555 588999999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
. .+++..+.++...|||+|.|+..-+++.
T Consensus 150 ~-------NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 150 T-------NDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred h-------ccCchHHHHHHHhcCCCccchhHHhccc
Confidence 9 8999999999999999999998766654
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.13 E-value=7e-10 Score=80.68 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccC-----CCCceEEEeccccc---cccCCCCeeEEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQM---DEFQTGSFDSVV 118 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~-----~~~~~~~~~d~~~~---~~~~~~~fD~v~ 118 (207)
+++|||+|||+|..+..++.. +..+|+..|..+ .++.++.++.. ..++.+...|+.+. ......+||+|+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il 124 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL 124 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence 359999999999999999998 556999999998 88888887653 25678888877652 112456899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+..+++.- +....+++.+.++|+++|.+++...
T Consensus 125 asDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 125 ASDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EecccchH-------HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99998865 8899999999999999999666653
No 159
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=1.5e-09 Score=82.18 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=81.8
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccc----ccccCCCCeeEEEeCc
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQ----MDEFQTGSFDSVVDKG 121 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~----~~~~~~~~fD~v~~~~ 121 (207)
.+||+|||+|..+..++..-. ..++++|.|+.++..+.+|.... ..+.+++.+... ..+...+++|+++++.
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 799999999999999988643 69999999999999999987632 456666443333 2234568999999997
Q ss_pred chhh-------------------hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDS-------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~-------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++-. +--+..+.+....++.-+.|+|+|||.+.+..-
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 6521 112223456778888888999999999998764
No 160
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.13 E-value=4.6e-10 Score=82.16 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=65.7
Q ss_pred HHHHHHhhCCCCC-CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
+..+++.+...+. ..|.|+|||.+.++..+. .+. +|..+|+.. .+-.+..+|+.+. |+++++.
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva-------------~n~~Vtacdia~v-PL~~~sv 123 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA-------------PNPRVTACDIANV-PLEDESV 123 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S----EEEEESS--------------SSTTEEES-TTS--S--TT-E
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC-------------CCCCEEEecCccC-cCCCCce
Confidence 4445554443332 499999999999986654 334 899999865 2456888999888 8899999
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+++....|.. .++..+++++.|+|||||.+.|.....+
T Consensus 124 Dv~VfcLSLMG--------Tn~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 124 DVAVFCLSLMG--------TNWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp EEEEEES---S--------S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred eEEEEEhhhhC--------CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence 99998766654 6899999999999999999999885444
No 161
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.12 E-value=1.6e-10 Score=84.57 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=79.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc---cCCCCeeEEEeCc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE---FQTGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~---~~~~~fD~v~~~~ 121 (207)
+.+|||+-||+|.++.+.+.+|..+++.||.++.++...++++... ..+.+++.|+..... .....||+|++.+
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 4499999999999999999999999999999999999999987632 247888888776421 1468999999998
Q ss_pred chhhhccCCCChhhHHHHHHHHH--HhcCCCcEEEEEEeCC
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTYGA 160 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~~~ 160 (207)
++..- .....+++.+. .+|+++|++++.....
T Consensus 123 PY~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 123 PYAKG-------LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp STTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred Ccccc-------hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 87742 22477888887 7999999998877444
No 162
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=7e-10 Score=83.40 Aligned_cols=114 Identities=19% Similarity=0.174 Sum_probs=90.0
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~ 110 (207)
...++....-.++.+|+|.|.|+|.++..++.. +. .+|+.+|+-++..+.|++|+... .++.+...|+.+.. .+
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~~ 161 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-DE 161 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-cc
Confidence 455555554555669999999999999999963 33 59999999999999999998753 34889999999973 33
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
+.||.|+.. + .++-..++++.+.|+|||.+.+-.......
T Consensus 162 -~~vDav~LD-----m-------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv 201 (256)
T COG2519 162 -EDVDAVFLD-----L-------PDPWNVLEHVSDALKPGGVVVVYSPTVEQV 201 (256)
T ss_pred -cccCEEEEc-----C-------CChHHHHHHHHHHhCCCcEEEEEcCCHHHH
Confidence 499999954 2 577889999999999999998766544433
No 163
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.11 E-value=8.2e-10 Score=81.41 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=76.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-c-C-CCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-F-Q-TGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~-~-~~~fD~v~~~~~ 122 (207)
.+|||++||+|.++..++.+|...++++|.++.+++.+++++... .++.+++.|+.+... . . ...||+|+...+
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP 130 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP 130 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence 499999999999999999998779999999999999999887632 367899999966421 1 1 224799998776
Q ss_pred hhhhccCCCChhhHHHHHHHHH--HhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~ 158 (207)
+.. .....+++.+. .+|+++|++++...
T Consensus 131 y~~--------~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 131 FFN--------GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CCC--------CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 652 23445555553 46888888777653
No 164
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.10 E-value=5.9e-10 Score=83.05 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=82.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC---CCceEEE-eccccccc-cCCCCeeEEEe
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR---PQLKYIK-MDVRQMDE-FQTGSFDSVVD 119 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~-~d~~~~~~-~~~~~fD~v~~ 119 (207)
++++|||||.+.|.-+.+|+..-. .+++.+|.+++..+.|++++... ..+..+. +|..+... ...++||+||.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 446999999999999999988643 58999999999999999998743 3477777 57777532 35689999995
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
. + ...+.+.+++.+.++|+|||++++-..
T Consensus 139 D----a------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 139 D----A------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred e----C------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 4 3 235778999999999999999998653
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.09 E-value=1.9e-09 Score=84.01 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=66.4
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..+++.....++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. .++.++++|+.+. +++.-.++.
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~-~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKV-DLSELQPLK 108 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcC-CHHHcCcce
Confidence 3444444334445999999999999999999876 999999999999999988754 6899999999987 343222588
Q ss_pred EEeCcchh
Q 028547 117 VVDKGTLD 124 (207)
Q Consensus 117 v~~~~~l~ 124 (207)
|+++.++.
T Consensus 109 vv~NlPY~ 116 (272)
T PRK00274 109 VVANLPYN 116 (272)
T ss_pred EEEeCCcc
Confidence 88886644
No 166
>PLN02476 O-methyltransferase
Probab=99.09 E-value=1.3e-09 Score=84.32 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=80.4
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc-----CCCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF-----QTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~-----~~~~fD~v 117 (207)
+++|||+|+++|..+.+++..- ...++++|.+++..+.|++++... .+++++.+|+.+..+. ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 4599999999999999998742 237999999999999999988643 4799999999875321 13689999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.... ......+++.+.+.|+|||++++-.
T Consensus 199 FIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 199 FVDAD----------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EECCC----------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 96532 3567888999999999999998854
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.09 E-value=8.6e-10 Score=85.34 Aligned_cols=84 Identities=13% Similarity=0.264 Sum_probs=67.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..+++.....++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++....++.++++|+.+. +++ .||.
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~-~~~--~~d~ 94 (258)
T PRK14896 19 DRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV-DLP--EFNK 94 (258)
T ss_pred HHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC-Cch--hceE
Confidence 3444444333445999999999999999999854 99999999999999998876556899999999987 333 5899
Q ss_pred EEeCcchh
Q 028547 117 VVDKGTLD 124 (207)
Q Consensus 117 v~~~~~l~ 124 (207)
|+++.+++
T Consensus 95 Vv~NlPy~ 102 (258)
T PRK14896 95 VVSNLPYQ 102 (258)
T ss_pred EEEcCCcc
Confidence 99987765
No 168
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.09 E-value=5.9e-10 Score=82.94 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-c----CCCCeeE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-F----QTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~----~~~~fD~ 116 (207)
++++||||||++|.-+.++++.-. ++++.+|++++..+.|++.+... .+++++.+|+.+..+ + ..++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 334999999999999999998532 59999999999999999987632 479999999987522 1 1358999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||.... .......++.+.++|+|||++++-.
T Consensus 125 VFiDa~----------K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDAD----------KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEST----------GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEccc----------ccchhhHHHHHhhhccCCeEEEEcc
Confidence 996532 3566788999999999999999865
No 169
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.07 E-value=1.2e-09 Score=88.72 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=80.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++.... .++.|.++|+.+.......+||+|+++.+-..+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 499999999999999999876 49999999999999999987633 478999999987532122469999988664322
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccccCCCCceE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNI 176 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (207)
...+++.+. .++|++++|++- .+....+-+....+|.+
T Consensus 314 ---------~~~~l~~l~-~~~p~~ivyvsc--~p~TlaRDl~~L~gy~l 351 (374)
T TIGR02085 314 ---------GKELCDYLS-QMAPKFILYSSC--NAQTMAKDIAELSGYQI 351 (374)
T ss_pred ---------cHHHHHHHH-hcCCCeEEEEEe--CHHHHHHHHHHhcCceE
Confidence 234445554 478988777653 33333333322244555
No 170
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.07 E-value=1.2e-09 Score=85.02 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=80.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCe
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (207)
.++.+...-.++.|||+|||+|.++.+.++.|.++|++++.|+ |.+.|++....+ .++.++.+-+.+.. .+++.
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPEk~ 244 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE--LPEKV 244 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc--Cchhc
Confidence 3444444444569999999999999999999989999999766 778888776643 57889999998883 45789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
|+|++-.+ .+++. +++-++..+ ...++|+|.|.++-.
T Consensus 245 DviISEPM-G~mL~---NERMLEsYl-~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 245 DVIISEPM-GYMLV---NERMLESYL-HARKWLKPNGKMFPT 281 (517)
T ss_pred cEEEeccc-hhhhh---hHHHHHHHH-HHHhhcCCCCcccCc
Confidence 99998643 33311 223333333 345999999998753
No 171
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.07 E-value=7.9e-10 Score=85.92 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=90.3
Q ss_pred ecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-C---CCCceEEEecccc
Q 028547 30 YQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-N---RPQLKYIKMDVRQ 105 (207)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-~---~~~~~~~~~d~~~ 105 (207)
+...+..+..+..+.. +++|||+-|-+|.++...+..|..+|+.||.|..+++.+++++. + ...++|++.|+.+
T Consensus 108 FlDqR~nR~~v~~~~~--gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~ 185 (286)
T PF10672_consen 108 FLDQRENRKWVRKYAK--GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK 185 (286)
T ss_dssp -GGGHHHHHHHHHHCT--TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH
T ss_pred cHHHHhhHHHHHHHcC--CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence 3333445556655532 34999999999999999999887799999999999999999876 2 2478999999988
Q ss_pred ccc--cCCCCeeEEEeCcchhhhccCC-CChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccc
Q 028547 106 MDE--FQTGSFDSVVDKGTLDSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYR 164 (207)
Q Consensus 106 ~~~--~~~~~fD~v~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~ 164 (207)
... ...++||+|++..+-.. .+. .-..+...++..+.++|+|||.+++.+++.....
T Consensus 186 ~l~~~~~~~~fD~IIlDPPsF~--k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~ 245 (286)
T PF10672_consen 186 FLKRLKKGGRFDLIILDPPSFA--KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISP 245 (286)
T ss_dssp HHHHHHHTT-EEEEEE--SSEE--SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-H
T ss_pred HHHHHhcCCCCCEEEECCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCH
Confidence 522 13569999998765332 111 1124677889999999999999988887665443
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.06 E-value=3.5e-09 Score=81.74 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=66.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+..+++.....++.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++....++.++++|+.+. +++ .+|
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~-~~~--~~d 93 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV-DLP--DFP 93 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC-Chh--HcC
Confidence 34455544334445999999999999999999875 89999999999999998875446889999999987 333 466
Q ss_pred ---EEEeCcchh
Q 028547 116 ---SVVDKGTLD 124 (207)
Q Consensus 116 ---~v~~~~~l~ 124 (207)
.|+++.+++
T Consensus 94 ~~~~vvsNlPy~ 105 (253)
T TIGR00755 94 KQLKVVSNLPYN 105 (253)
T ss_pred CcceEEEcCChh
Confidence 788776544
No 173
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.04 E-value=2.3e-09 Score=83.30 Aligned_cols=110 Identities=21% Similarity=0.310 Sum_probs=87.5
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeE
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
.++.+++||-||.|.|..+.++.+... .+++.||++++.++.+++.++. .+++.++..|..++......+||+
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 344556999999999999999999874 7999999999999999998762 267899999999974333448999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
|++...=. . ++...-....+++.+++.|+++|+++..
T Consensus 153 Ii~D~tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99763211 1 2223335689999999999999999987
No 174
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.04 E-value=1.4e-09 Score=90.13 Aligned_cols=97 Identities=11% Similarity=0.203 Sum_probs=72.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc---cCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l 123 (207)
.+|||+|||+|.++..+++... +|+++|+++.+++.+++++.. ..+++|+.+|+.+..+ ....+||+|++..+-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 4999999999999999998754 999999999999999998763 2589999999976421 234579999976542
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.. -...+++.+.+ ++|++++|++
T Consensus 373 ~G---------~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 373 KG---------CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CC---------CCHHHHHHHHh-cCCCEEEEEc
Confidence 21 12445555544 7888876653
No 175
>PRK04148 hypothetical protein; Provisional
Probab=99.04 E-value=5.8e-09 Score=71.72 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=79.2
Q ss_pred HHHHHHhhCCC-CCCcEEEEcCCCch-hhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 36 LAPLIKLYVPS-HHQRILIVGCGNSA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~-~~~~vLdiG~G~G~-~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
+.+.+....+. ++.+|+|+|||+|. ++..+++.|+ +|+++|+++.+++.++++ .+.+++.|+.+...-.-+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y~~ 77 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIYKN 77 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHHhc
Confidence 34444443332 33589999999995 8888998888 999999999999999876 4689999999975334578
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+|+|.+..+ ..+....+.++++.+. .-+++..++.+.
T Consensus 78 a~liysirp----------p~el~~~~~~la~~~~--~~~~i~~l~~e~ 114 (134)
T PRK04148 78 AKLIYSIRP----------PRDLQPFILELAKKIN--VPLIIKPLSGEE 114 (134)
T ss_pred CCEEEEeCC----------CHHHHHHHHHHHHHcC--CCEEEEcCCCCC
Confidence 999997533 3455666666666554 567776766554
No 176
>PRK00536 speE spermidine synthase; Provisional
Probab=99.01 E-value=6.7e-09 Score=79.79 Aligned_cols=99 Identities=14% Similarity=0.234 Sum_probs=76.4
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCee
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
...++++++||-+|.|.|..+.++++... +|+.||++++.++.+++.++. .++++++.. +.+ ...++||
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~---~~~~~fD 141 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD---LDIKKYD 141 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh---ccCCcCC
Confidence 44556667999999999999999999854 999999999999999996652 256666541 111 1246899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+.... ....+++.+.+.|+|||+++...
T Consensus 142 VIIvDs~------------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 142 LIICLQE------------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEEcCC------------CChHHHHHHHHhcCCCcEEEECC
Confidence 9997643 22677899999999999999854
No 177
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.99 E-value=2.9e-09 Score=79.95 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=71.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
..|.|+|||.+.++. .. ...|+.+|+.+ .+-+++.+|+.+. |..+++.|+++....+..
T Consensus 182 ~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-------------~~~~V~~cDm~~v-Pl~d~svDvaV~CLSLMg--- 240 (325)
T KOG3045|consen 182 IVIADFGCGEAKIAS---SE-RHKVHSFDLVA-------------VNERVIACDMRNV-PLEDESVDVAVFCLSLMG--- 240 (325)
T ss_pred eEEEecccchhhhhh---cc-ccceeeeeeec-------------CCCceeeccccCC-cCccCcccEEEeeHhhhc---
Confidence 399999999988765 22 24899999855 3678999999997 889999999987655443
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.++..++++++|+|++||.++|......
T Consensus 241 -----tn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 241 -----TNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred -----ccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 6889999999999999999999875433
No 178
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=9.4e-09 Score=80.99 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=89.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEe-ccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKM-DVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~-d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+..|||.-||||.++.++.-.|. .++|+|++..+++-++.|+... ....+... |+.+. |+++.++|.|++..+
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-pl~~~~vdaIatDPP 273 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-PLRDNSVDAIATDPP 273 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-CCCCCccceEEecCC
Confidence 3334999999999999999999988 9999999999999999998743 45555665 99998 688778999999877
Q ss_pred hhhhccCCCC--hhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNS--RQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.--...... .+-...+++.+.++|++||.+++...
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 6543211111 24578899999999999999998775
No 179
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.96 E-value=3.7e-09 Score=82.99 Aligned_cols=85 Identities=19% Similarity=0.364 Sum_probs=67.2
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~ 112 (207)
+..+++.....++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++.. ..+++++++|+.+.. + .
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~--~ 100 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-F--P 100 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-c--c
Confidence 34455544444445999999999999999998865 899999999999999988753 257999999998863 3 3
Q ss_pred CeeEEEeCcchh
Q 028547 113 SFDSVVDKGTLD 124 (207)
Q Consensus 113 ~fD~v~~~~~l~ 124 (207)
.||.|+++.+++
T Consensus 101 ~~d~VvaNlPY~ 112 (294)
T PTZ00338 101 YFDVCVANVPYQ 112 (294)
T ss_pred ccCEEEecCCcc
Confidence 689999986665
No 180
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.95 E-value=3.9e-08 Score=71.29 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=88.0
Q ss_pred CccCHHHHHHhhCCC---CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccc
Q 028547 32 KYPSLAPLIKLYVPS---HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQ 105 (207)
Q Consensus 32 ~~~~~~~~l~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~ 105 (207)
....+++.+-+.+.. .+.++||+-+|+|.++.+.+.+|...++.+|.+..++...+++.... .+.+++..|+..
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 334555555555543 23599999999999999999999889999999999999999987632 578888888885
Q ss_pred ccccCCC--CeeEEEeCcchhhhccCCCChhhHHHHHHH--HHHhcCCCcEEEEEEe
Q 028547 106 MDEFQTG--SFDSVVDKGTLDSLLCGSNSRQNATQMLKE--VWRVLKDKGVYILVTY 158 (207)
Q Consensus 106 ~~~~~~~--~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~--~~~~L~pgG~~~~~~~ 158 (207)
..+.... +||+|+...+++. +.-+....+.. -..+|+|+|.+++..-
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAK------GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHhcCCCCcccEEEeCCCCcc------chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 4222223 4999999988773 11222333333 4578999999998763
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.95 E-value=3.4e-09 Score=87.64 Aligned_cols=100 Identities=22% Similarity=0.293 Sum_probs=71.7
Q ss_pred CcEEEEcCCCchhhHHHHhcC-----CCcEEEEeCCHHHHHHHHHHcc--CC-CCceEEEeccccccccCCCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-----~~~v~~~D~s~~~i~~~~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.|+|+|||+|.++...++.+ ..+|+++|.++.++...+++.. .. ..++++++|+.+.. ...++|+|++-
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~--lpekvDIIVSE 265 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE--LPEKVDIIVSE 265 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC--HSS-EEEEEE-
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC--CCCceeEEEEe
Confidence 489999999999998877764 3599999999998887765522 22 57999999999984 45699999985
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+..++. .+-....+....+.|+|||+++=
T Consensus 266 -lLGsfg~----nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 266 -LLGSFGD----NELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp ---BTTBT----TTSHHHHHHHGGGGEEEEEEEES
T ss_pred -ccCCccc----cccCHHHHHHHHhhcCCCCEEeC
Confidence 2333322 23555678888999999998763
No 182
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.94 E-value=1.1e-08 Score=78.86 Aligned_cols=104 Identities=15% Similarity=0.259 Sum_probs=81.7
Q ss_pred CCcEEEEcCCCc----hhhHHHHhcC-----C-CcEEEEeCCHHHHHHHHHHcc-------------------CC-----
Q 028547 48 HQRILIVGCGNS----AFSEGMVDDG-----Y-EDVVNVDISSVVIEAMMKKYS-------------------NR----- 93 (207)
Q Consensus 48 ~~~vLdiG~G~G----~~~~~l~~~~-----~-~~v~~~D~s~~~i~~~~~~~~-------------------~~----- 93 (207)
.-+|+-.||++| .++..+.+.+ + -+|++.|++..+++.|+.-.- ..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 349999999999 3444444432 2 389999999999999874110 00
Q ss_pred -------CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 94 -------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 94 -------~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..|.|...|+....+ ..+.||+|+|.+++-++ +......+++..+..|+|||.|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYF-----d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYF-----DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEee-----CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 257889999988743 56789999999999998 77899999999999999999998844
No 183
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.93 E-value=1.5e-08 Score=77.33 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=81.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~ 110 (207)
+..++..+.-.++.+|||.|.|+|.++..++.. +. .+|+.+|+.++..+.|++++... .++.+.+.|+.+. .+.
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~-g~~ 107 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE-GFD 107 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG---S
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc-ccc
Confidence 455555555566669999999999999999874 33 59999999999999999998743 5799999999864 232
Q ss_pred ---CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhc-CCCcEEEEEEeCCc
Q 028547 111 ---TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTYGAP 161 (207)
Q Consensus 111 ---~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~~~~~ 161 (207)
...+|.|+... .++-..+..+.+.| ++||.+.+-..+-.
T Consensus 108 ~~~~~~~DavfLDl------------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 108 EELESDFDAVFLDL------------PDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp TT-TTSEEEEEEES------------SSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred ccccCcccEEEEeC------------CCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 36899999653 34455788889999 89999887654433
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.93 E-value=1e-08 Score=78.31 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=79.4
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc------CCCCeeE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF------QTGSFDS 116 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~------~~~~fD~ 116 (207)
+++|||||+++|.-+.+++..- -.+++++|.+++..+.|++++... .+++++.+++.+..+. ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 4599999999999999888752 248999999999999999987633 5799999998885321 1368999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||...- .......++.+.+.|+|||++++-.
T Consensus 160 iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 160 IFVDAD----------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEecCC----------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 996532 3566788888999999999988743
No 185
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.92 E-value=3.3e-09 Score=81.30 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=83.2
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCC-Ce
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTG-SF 114 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~-~f 114 (207)
...+++++||-||.|.|..+.++.+.. ..+++.+|+++..++.+++.++. .++++++..|.........+ +|
T Consensus 72 ~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 72 LLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp HHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred hcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 334455699999999999999999875 36999999999999999987652 36899999999986433445 89
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+|+....- .. +....-....+++.+.+.|+|||++++..
T Consensus 152 DvIi~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTD-PD--GPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEESSS-TT--SCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEeCCC-CC--CCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999975321 11 11111356889999999999999999865
No 186
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.92 E-value=4.6e-09 Score=76.76 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-Cc---------EEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-ED---------VVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~---------v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+++..|||.-||+|.+.++.+..+. .. ++|+|+++++++.+++++... ..+.+.+.|+.++ ++..+
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-PLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-GGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-ccccC
Confidence 3445999999999999998877643 13 789999999999999987632 3578999999998 46778
Q ss_pred CeeEEEeCcchhhhccC-CCChhhHHHHHHHHHHhcCC
Q 028547 113 SFDSVVDKGTLDSLLCG-SNSRQNATQMLKEVWRVLKD 149 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~L~p 149 (207)
++|.|+++.++..-... .....-...+++++.+++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999887642110 01123456678888889998
No 187
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.90 E-value=3.3e-09 Score=78.54 Aligned_cols=109 Identities=21% Similarity=0.275 Sum_probs=88.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccc-cccCCCCeeEEEe
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQM-DEFQTGSFDSVVD 119 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~-~~~~~~~fD~v~~ 119 (207)
.+.+.+|||.+.|-|+.++..++.|...|+.+|.++..++.|+-|.=+. ..++++.+|+.+. ..+.+++||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 3445599999999999999999999889999999999999988764321 4689999999985 4478899999997
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+=..+ .++-....+.++++++|+|||.++--+
T Consensus 212 DPPRfS~----AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 212 DPPRFSL----AGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CCCccch----hhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 6543332 235688999999999999999987543
No 188
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.89 E-value=4.8e-09 Score=80.17 Aligned_cols=147 Identities=20% Similarity=0.237 Sum_probs=90.8
Q ss_pred CCCChhchhhhhcccCCceeeecCcc-CHHHHHHhhCC--CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQKYP-SLAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
.|+.+.|.+.+|........-..-.. .+..+.+.+.. .++.++||+|||+-.+...-+...+.+++..|.++..++.
T Consensus 15 ~FdP~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~e 94 (256)
T PF01234_consen 15 EFDPRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREE 94 (256)
T ss_dssp HB-HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHH
T ss_pred cCCHHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHH
Confidence 46677788878865543321000000 01111112211 2224899999999766554454545799999999998887
Q ss_pred HHHHccCCC------------------------------C-ceEEEeccccccccCC-----CCeeEEEeCcchhhhccC
Q 028547 86 MMKKYSNRP------------------------------Q-LKYIKMDVRQMDEFQT-----GSFDSVVDKGTLDSLLCG 129 (207)
Q Consensus 86 ~~~~~~~~~------------------------------~-~~~~~~d~~~~~~~~~-----~~fD~v~~~~~l~~~~~~ 129 (207)
.++.+.+.. . -+++.+|+.+..|+.. ..||+|++..++...
T Consensus 95 l~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a--- 171 (256)
T PF01234_consen 95 LEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA--- 171 (256)
T ss_dssp HHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH---
T ss_pred HHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHH---
Confidence 766443210 1 2477889998755543 359999999888866
Q ss_pred CCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 130 SNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+.+.....++++.++|||||.|++...
T Consensus 172 ~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 172 CKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp -SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 34567899999999999999999999764
No 189
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.89 E-value=2.2e-08 Score=75.66 Aligned_cols=104 Identities=16% Similarity=0.271 Sum_probs=66.2
Q ss_pred CHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCce-EEEecccccc--cc-
Q 028547 35 SLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLK-YIKMDVRQMD--EF- 109 (207)
Q Consensus 35 ~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~-~~~~d~~~~~--~~- 109 (207)
.+..++..+.. ..+++|||+|||+|.++..+++.|..+|+++|+++.++....+.- +++. +...|+.... .+
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~ 138 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIF 138 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcC
Confidence 34555555432 244489999999999999999998779999999998777622221 1221 2233333221 01
Q ss_pred -CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 110 -QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 110 -~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.-..+|+++++. ...+..+.+.|++ |.+++..
T Consensus 139 ~d~~~~DvsfiS~---------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 139 PDFATFDVSFISL---------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCceeeeEEEeeh---------------HhHHHHHHHHhCc-CeEEEEc
Confidence 223677777541 2258888999999 7766544
No 190
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=2.7e-09 Score=73.28 Aligned_cols=79 Identities=19% Similarity=0.360 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
-.+++++|+|||.|.++...+-.+...+.|+|+.+++++.+.++.... .++.++++|+.++. +..+.||.++.+.++.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-LKGGIFDTAVINPPFG 125 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-ccCCeEeeEEecCCCC
Confidence 344699999999999996666666679999999999999999988755 57899999999984 5668999999998876
Q ss_pred h
Q 028547 125 S 125 (207)
Q Consensus 125 ~ 125 (207)
.
T Consensus 126 T 126 (185)
T KOG3420|consen 126 T 126 (185)
T ss_pred c
Confidence 4
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.88 E-value=1.1e-08 Score=86.30 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=83.9
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccc-cccCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~ 125 (207)
.+||||||.|.++..++...+ ..++|+|+....+..+.++.. +..|+.+++.|+..+ ..++++++|.|+.+.+=-|
T Consensus 350 ~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW 429 (506)
T PRK01544 350 VFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW 429 (506)
T ss_pred eEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC
Confidence 999999999999999999865 599999999988888777654 236888888887643 2367788999997654443
Q ss_pred hc-cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LL-CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.. .+....--...+++.++++|+|||.+.+.|
T Consensus 430 pKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 430 IKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 32 122233357889999999999999999988
No 192
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.86 E-value=9.1e-09 Score=76.11 Aligned_cols=101 Identities=23% Similarity=0.296 Sum_probs=70.7
Q ss_pred HHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCee
Q 028547 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 40 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+.....+.. +|+|+.||-|.++..+++.+ .+.|+++|++|.+++.++++...+ ..+..+++|..+.. +...||
T Consensus 95 i~~~v~~~e-~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~~~d 171 (200)
T PF02475_consen 95 IANLVKPGE-VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEGKFD 171 (200)
T ss_dssp HHTC--TT--EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EE
T ss_pred HHhcCCcce-EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--CccccC
Confidence 333444454 99999999999999999833 358999999999999999987622 45788999999984 378999
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.|+++.+-.. ..++..+.+++++||++-
T Consensus 172 rvim~lp~~~-----------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 172 RVIMNLPESS-----------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEE--TSSG-----------GGGHHHHHHHEEEEEEEE
T ss_pred EEEECChHHH-----------HHHHHHHHHHhcCCcEEE
Confidence 9998755333 346777889999998763
No 193
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.85 E-value=4.2e-08 Score=81.55 Aligned_cols=114 Identities=12% Similarity=0.158 Sum_probs=85.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+++.+|||+++|+|.=+..++... ...+++.|+++.-++.+++++... .++.+...|...+.......||.|+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 444599999999999998888753 248999999999999998887743 5778888888876333346799999765
Q ss_pred chhhhccCCCC--------h-------hhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 122 TLDSLLCGSNS--------R-------QNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 122 ~l~~~~~~~~~--------~-------~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+.....--... . .....+|..+.+.|||||.++.+|++
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 55432211111 1 23578899999999999999999875
No 194
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=8.7e-08 Score=70.01 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=81.5
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC--CcEEEEeCCHHHHHHHHHHccCC------------CCceEE
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY--EDVVNVDISSVVIEAMMKKYSNR------------PQLKYI 99 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~--~~v~~~D~s~~~i~~~~~~~~~~------------~~~~~~ 99 (207)
.+.+.|+..+.+.. +.||+|+|+|+++.-++.. +. ....|+|.-++.++.+++++... .++.++
T Consensus 71 ~~le~L~~~L~pG~-s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 71 TALEYLDDHLQPGA-SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHhhccCc-ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 34455554455555 9999999999999877753 22 24599999999999999876521 367899
Q ss_pred EeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 100 KMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 100 ~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+|..... -...+||.|.+.. ......+++.+.|++||.+++..
T Consensus 150 vGDgr~g~-~e~a~YDaIhvGA-------------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 150 VGDGRKGY-AEQAPYDAIHVGA-------------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eCCccccC-CccCCcceEEEcc-------------CccccHHHHHHhhccCCeEEEee
Confidence 99999974 3678999999763 33445677788999999998865
No 195
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.81 E-value=3.3e-08 Score=80.10 Aligned_cols=94 Identities=16% Similarity=0.300 Sum_probs=67.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc-cC--------------C
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-FQ--------------T 111 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~-~~--------------~ 111 (207)
.+|||++||+|.++..+++. ..+|+++|+++.+++.++++.... .++.|+++|+.+..+ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 37999999999999988876 459999999999999999987532 579999999987421 11 1
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
..||+|+...+-.. ....+++.+.+ |++++|+
T Consensus 287 ~~~D~v~lDPPR~G---------~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 287 YNFSTIFVDPPRAG---------LDDETLKLVQA---YERILYI 318 (362)
T ss_pred CCCCEEEECCCCCC---------CcHHHHHHHHc---cCCEEEE
Confidence 25899998765321 22444444444 5666554
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=4.3e-08 Score=74.84 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=71.8
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCC-C
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG-S 113 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~ 113 (207)
.+..+++.....++..|||||+|.|.++..+++.+. .|+++|+++.++...++++....++.++.+|+.+.+ ++.- .
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d-~~~l~~ 95 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD-FPSLAQ 95 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc-chhhcC
Confidence 355666655444445999999999999999999977 899999999999999999875579999999999983 4432 6
Q ss_pred eeEEEeCcchh
Q 028547 114 FDSVVDKGTLD 124 (207)
Q Consensus 114 fD~v~~~~~l~ 124 (207)
++.|+++-+++
T Consensus 96 ~~~vVaNlPY~ 106 (259)
T COG0030 96 PYKVVANLPYN 106 (259)
T ss_pred CCEEEEcCCCc
Confidence 78999986654
No 197
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.77 E-value=6.2e-08 Score=78.43 Aligned_cols=97 Identities=9% Similarity=0.178 Sum_probs=79.5
Q ss_pred CcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+.||+|..++.++.. |..+|+++|+++.+++.+++++... .++.+.+.|+..........||+|+... +.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 38999999999999999987 5579999999999999999988632 4678999999987433346799999754 22
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
....+++.+.+.++++|+++++
T Consensus 125 ----------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 ----------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ----------CcHHHHHHHHHhcccCCEEEEE
Confidence 2346888899999999999986
No 198
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.75 E-value=1e-08 Score=75.12 Aligned_cols=119 Identities=17% Similarity=0.250 Sum_probs=70.9
Q ss_pred HHHHHHhhC--CC-CCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----
Q 028547 36 LAPLIKLYV--PS-HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---- 106 (207)
Q Consensus 36 ~~~~l~~~~--~~-~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~---- 106 (207)
+.++.+.+. .. ...+|||+||++|.++..+.+.+ ...|+|+|+.+. ...+++.++++|+.+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIK 79 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHH
Confidence 345555443 22 23599999999999999999997 359999999875 1113455555555542
Q ss_pred --cc-c--CCCCeeEEEeCcchhhhccCC-C---ChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 107 --DE-F--QTGSFDSVVDKGTLDSLLCGS-N---SRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 107 --~~-~--~~~~fD~v~~~~~l~~~~~~~-~---~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
.. . ..+.+|+|++......-.... + ...-....+.-+.+.|+|||.+++..+.....
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp HGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred hhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 11 1 126899999987332210000 0 01334445555567899999999988776554
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.75 E-value=6.6e-08 Score=78.06 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=67.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccccc----------C-----CC
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEF----------Q-----TG 112 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~----------~-----~~ 112 (207)
+|||++||+|.++..+++.. .+|+++|+++.+++.++++.... .+++|++.|+.+..+- . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 79999999999999888774 49999999999999999987633 5789999999875321 0 12
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.||+|+...+-. -....+++.+.+ |++++|++
T Consensus 279 ~~d~v~lDPPR~---------G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 279 NCSTIFVDPPRA---------GLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred CCCEEEECCCCC---------CCcHHHHHHHHc---CCcEEEEE
Confidence 379999765521 112344444443 66666653
No 200
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.75 E-value=5.3e-08 Score=79.20 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=75.6
Q ss_pred CcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+|||++||+|..+..++.. +..+|+++|+++.+++.+++++.. ..++.+.+.|+...... .+.||+|++... .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP~-G- 135 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDPF-G- 135 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECCC-C-
Confidence 38999999999999999775 335899999999999999998763 24567899999775311 467999997642 2
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
....+++.+.+.+++||+++++
T Consensus 136 ---------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ---------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---------CcHHHHHHHHHHhcCCCEEEEE
Confidence 2256777777888999999997
No 201
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.74 E-value=1.6e-07 Score=72.34 Aligned_cols=114 Identities=21% Similarity=0.265 Sum_probs=82.6
Q ss_pred HHHHHHhhCCC-----CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------------------
Q 028547 36 LAPLIKLYVPS-----HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS------------------- 91 (207)
Q Consensus 36 ~~~~l~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~------------------- 91 (207)
+...|....+. ...+||-.|||.|+++.+++..|+ .+.|.|.|--|+-...-.+.
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence 44455554441 223999999999999999999999 99999999987554332100
Q ss_pred -----------------------CCCCceEEEeccccccccC--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHh
Q 028547 92 -----------------------NRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRV 146 (207)
Q Consensus 92 -----------------------~~~~~~~~~~d~~~~~~~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 146 (207)
...+.....+|+.+.-+-. .++||+|+....++.. .+.-..++.|.++
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA-------~Ni~~Yi~tI~~l 191 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA-------ENIIEYIETIEHL 191 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech-------HHHHHHHHHHHHH
Confidence 0014566667777762112 3699999988777765 8999999999999
Q ss_pred cCCCcEEEEEE
Q 028547 147 LKDKGVYILVT 157 (207)
Q Consensus 147 L~pgG~~~~~~ 157 (207)
|||||.++=..
T Consensus 192 LkpgG~WIN~G 202 (270)
T PF07942_consen 192 LKPGGYWINFG 202 (270)
T ss_pred hccCCEEEecC
Confidence 99999877543
No 202
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.73 E-value=4.4e-08 Score=77.53 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=56.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC----CCceEEE-eccccc-cc--cCCCCeeEEEe
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR----PQLKYIK-MDVRQM-DE--FQTGSFDSVVD 119 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~-~d~~~~-~~--~~~~~fD~v~~ 119 (207)
.++||||||+|.+...++...+ .+++++|+++.+++.|++++... .++.+.. .+.... .. .+.+.||+|+|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 4999999999987777766522 38999999999999999988743 2455543 233222 11 24578999999
Q ss_pred Ccchhh
Q 028547 120 KGTLDS 125 (207)
Q Consensus 120 ~~~l~~ 125 (207)
+.+++.
T Consensus 196 NPPf~~ 201 (321)
T PRK11727 196 NPPFHA 201 (321)
T ss_pred CCCCcC
Confidence 998874
No 203
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.72 E-value=9.7e-08 Score=72.43 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=68.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+.++++....+++..|||+|.|||.++..+.+.+. +|+++|+++.++...++++.+. ...+++.+|+...+ .-
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d---~P 122 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD---LP 122 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---Cc
Confidence 44455544445555999999999999999999977 9999999999999999998754 46889999999873 23
Q ss_pred CeeEEEeCcchh
Q 028547 113 SFDSVVDKGTLD 124 (207)
Q Consensus 113 ~fD~v~~~~~l~ 124 (207)
.||.|+++-++.
T Consensus 123 ~fd~cVsNlPyq 134 (315)
T KOG0820|consen 123 RFDGCVSNLPYQ 134 (315)
T ss_pred ccceeeccCCcc
Confidence 689999975544
No 204
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.72 E-value=3.3e-07 Score=70.49 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=83.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCC---CcEEEEeCCHHHHHHHHHHccC--CCCc-eEEEeccccccccC--CCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAMMKKYSN--RPQL-KYIKMDVRQMDEFQ--TGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~i~~~~~~~~~--~~~~-~~~~~d~~~~~~~~--~~~fD~v~~~ 120 (207)
-+||||.||.|++......... .++...|+++..++..++.... ..++ +|.+.|+.+...+. .-..++++.+
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVs 216 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVS 216 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEe
Confidence 3999999999999888877632 5899999999999999887764 2555 99999999863222 3456999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.++.+ .+.+-....+..+++.+.|||.++...
T Consensus 217 GL~ElF----~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 217 GLYELF----PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred cchhhC----CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 998877 122346778999999999999999865
No 205
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.72 E-value=4.8e-09 Score=85.83 Aligned_cols=95 Identities=22% Similarity=0.317 Sum_probs=67.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEE-----eCCHHHHHHHHHHccCCCCceEEEec--cccccccCCCCeeEEEeCc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNV-----DISSVVIEAMMKKYSNRPQLKYIKMD--VRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~-----D~s~~~i~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~fD~v~~~~ 121 (207)
..+||+|||+|.++..|.+.+. +.+ |..+..++.|.++- +.-..+- ...+ ||+.+.||+|.|..
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~~qvqfaleRG-----vpa~~~~~~s~rL-Pfp~~~fDmvHcsr 189 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV---TTMSFAPNDEHEAQVQFALERG-----VPAMIGVLGSQRL-PFPSNAFDMVHCSR 189 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc---eEEEcccccCCchhhhhhhhcC-----cchhhhhhccccc-cCCccchhhhhccc
Confidence 4889999999999999999865 333 34444566665542 2222222 2334 89999999999988
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++..+ . .+-..++-++.|+|+|||.|+.+..
T Consensus 190 c~i~W-----~-~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 190 CLIPW-----H-PNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccccc-----h-hcccceeehhhhhhccCceEEecCC
Confidence 77654 1 2235688899999999999988663
No 206
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.68 E-value=8.9e-08 Score=74.94 Aligned_cols=85 Identities=11% Similarity=0.147 Sum_probs=67.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCC--
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT-- 111 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 111 (207)
+.++++.+...++..+||.+||.|..+..+++... .+|+|+|.++.+++.+++++....++.+++.|+.++.....
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcC
Confidence 45667766555555999999999999999998752 58999999999999999887544579999999998632222
Q ss_pred -CCeeEEEeC
Q 028547 112 -GSFDSVVDK 120 (207)
Q Consensus 112 -~~fD~v~~~ 120 (207)
.++|.|++.
T Consensus 88 ~~~vDgIl~D 97 (296)
T PRK00050 88 LGKVDGILLD 97 (296)
T ss_pred CCccCEEEEC
Confidence 279999876
No 207
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.4e-07 Score=68.15 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=78.4
Q ss_pred HHHHHHhh-CCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-----
Q 028547 36 LAPLIKLY-VPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----- 107 (207)
Q Consensus 36 ~~~~l~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~----- 107 (207)
+.++.+.+ +-++..+|+|||+.+|.+++.+++... ..|+++|+.| ....+++.++++|+....
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~~V~~iq~d~~~~~~~~~l 103 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIPGVIFLQGDITDEDTLEKL 103 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCCCceEEeeeccCccHHHHH
Confidence 34444433 223345999999999999999998743 2599999987 233357999999999852
Q ss_pred --ccCCCCeeEEEeCcchhhhccCCC------ChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 108 --EFQTGSFDSVVDKGTLDSLLCGSN------SRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 108 --~~~~~~fD~v~~~~~l~~~~~~~~------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
.+....+|+|++.+.-.. .+.. ...-....++-+..+|+|||.|++-.|-+...
T Consensus 104 ~~~l~~~~~DvV~sD~ap~~--~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 104 LEALGGAPVDVVLSDMAPNT--SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred HHHcCCCCcceEEecCCCCc--CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 124556799998755411 1111 11234445566678999999999988765543
No 208
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=3.6e-08 Score=75.26 Aligned_cols=131 Identities=19% Similarity=0.330 Sum_probs=92.6
Q ss_pred hhchhhhhcccCCcee--eecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc
Q 028547 13 PWYWDNRYAHESGPFD--WYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~ 90 (207)
.+|....|......|. -...+....++++.. +... .++|+|||.|.++..- ....++|+|++...+..+++.
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~-~~gs-v~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~- 84 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQ-PTGS-VGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS- 84 (293)
T ss_pred HHHhHHHHHHhhhhccccccCccHHHHHHHhcc-CCcc-eeeecccCCcccCcCC---CcceeeecchhhhhccccccC-
Confidence 3455555555544332 122233444555443 2333 8999999999765321 123789999999887777654
Q ss_pred cCCCCc-eEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 91 SNRPQL-KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 91 ~~~~~~-~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+. ....+|+.+. |++..+||.+++..++||+. .......+++++.++|+|||...+...
T Consensus 85 ----~~~~~~~ad~l~~-p~~~~s~d~~lsiavihhls----T~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 85 ----GGDNVCRADALKL-PFREESFDAALSIAVIHHLS----TRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred ----CCceeehhhhhcC-CCCCCccccchhhhhhhhhh----hHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34 6888999999 78999999999999999983 346788999999999999999777654
No 209
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.60 E-value=5.9e-07 Score=71.35 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=87.3
Q ss_pred HHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeE
Q 028547 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 40 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
+........ +|+|+-+|-|.++..+++.+...|+++|++|.+++.+++++.-+ ..+..+++|..+..+ ....+|.
T Consensus 182 va~~v~~GE-~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-~~~~aDr 259 (341)
T COG2520 182 VAELVKEGE-TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-ELGVADR 259 (341)
T ss_pred HHhhhcCCC-EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh-ccccCCE
Confidence 333334444 99999999999999999998756999999999999999998732 348899999999842 2388999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
|+++.+. ....++..+.+.+++||++.+..+.....
T Consensus 260 Iim~~p~-----------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 260 IIMGLPK-----------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred EEeCCCC-----------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 9987543 34567777788888899998877665544
No 210
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.56 E-value=1.2e-06 Score=64.35 Aligned_cols=115 Identities=13% Similarity=0.188 Sum_probs=87.0
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-CCCCceEEEeccccc-cccCCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQM-DEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~ 113 (207)
+.+.+...+..++.+||++|.|-|....++.+..+.+-+.++..++.++..+.... ...|+..+.+-..+. ...+++.
T Consensus 90 iMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~ 169 (271)
T KOG1709|consen 90 IMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKH 169 (271)
T ss_pred HHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccC
Confidence 34444444445555999999999999999988877788899999999999988654 336788888777664 2357888
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||-|+-.-.-.+. ++...+.+.+.++|||+|+|-+..
T Consensus 170 FDGI~yDTy~e~y-------Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 170 FDGIYYDTYSELY-------EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cceeEeechhhHH-------HHHHHHHHHHhhhcCCCceEEEec
Confidence 9999954222333 788999999999999999986543
No 211
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.53 E-value=7.1e-07 Score=65.31 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=73.3
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+++|+|+|.|-=++-++-..+ .+++.+|....-+...+.... +..|+.+++..+.+. ....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~--~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP--EYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT--TTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc--ccCCCccEEEeehh----
Confidence 899999999977776666544 489999999987777666544 336899999999982 35689999998865
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+++-+...+++||.++..-
T Consensus 125 -------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 455788899999999999988754
No 212
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.52 E-value=1.7e-07 Score=66.81 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=62.5
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEecccccccc-CCCC-eeEEEeCcchh
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF-QTGS-FDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~-~~~~-fD~v~~~~~l~ 124 (207)
.|+|+.||.|..+..+++... .|+++|+++..++.++.++.- ..++.|+++|+.+..+. .... +|+|+++.+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 699999999999999999854 999999999999999998762 25899999999997422 2222 89999987664
Q ss_pred hhcc------C---CCChhhHHHHHHHHHHhc
Q 028547 125 SLLC------G---SNSRQNATQMLKEVWRVL 147 (207)
Q Consensus 125 ~~~~------~---~~~~~~~~~~l~~~~~~L 147 (207)
.... . .-..-+...+++...++.
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 3210 0 011225666666666554
No 213
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2.3e-06 Score=69.18 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=85.6
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCC---CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc-cCC-CCeeE
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-FQT-GSFDS 116 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~-~~~-~~fD~ 116 (207)
.++++.+|||++++.|.=+.++++... ..|+++|.++.-++..++++... .|+...+.|...... ... ++||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 345556999999999988888877643 24699999999999888887743 567788888765421 122 35999
Q ss_pred EEeCcchhhhccCCCC---------------hhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSNS---------------RQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~---------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+...+....+..... ...+..+|..+.+.|||||.++++|++-.
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 9987666544311110 12577889999999999999999997543
No 214
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.51 E-value=1.2e-06 Score=69.15 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=83.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
...+|+|.|.|+.+..+... +.++.+++.+...+..+...+. +.+..+-+|..+.. | .-|+|++.-++|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~~--P--~~daI~mkWiLhdw-- 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQDT--P--KGDAIWMKWILHDW-- 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc--CCcceecccccccC--C--CcCeEEEEeecccC--
Confidence 48899999999999999994 5589999999988888877764 34778888888764 3 23699998888887
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.++..++|+++++.|+|+|.+++...
T Consensus 250 ---tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 ---TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ---ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 889999999999999999999999875
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.50 E-value=4.4e-07 Score=72.21 Aligned_cols=129 Identities=12% Similarity=0.202 Sum_probs=78.9
Q ss_pred ecCccCHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhc--------CCCcEEEEeCCHHHHHHHHHHcc--CC--CCc
Q 028547 30 YQKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDD--------GYEDVVNVDISSVVIEAMMKKYS--NR--PQL 96 (207)
Q Consensus 30 ~~~~~~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--------~~~~v~~~D~s~~~i~~~~~~~~--~~--~~~ 96 (207)
+.....+..++..++. ....+|+|.+||+|.++..+.+. ...+++|+|+++.++..++.++. .. .+.
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~ 107 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI 107 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence 3344445555544443 33348999999999999887762 23499999999999998887643 11 234
Q ss_pred eEEEeccccccccC-CCCeeEEEeCcchhhhccCC--------------CChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 97 KYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSLLCGS--------------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 97 ~~~~~d~~~~~~~~-~~~fD~v~~~~~l~~~~~~~--------------~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+...|........ ...||+|+++.++....... ........++..+.+.|++||.+.++..
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 57788877653233 57999999998876541000 1112334588999999999999777653
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.49 E-value=3.1e-06 Score=65.70 Aligned_cols=87 Identities=17% Similarity=0.307 Sum_probs=67.9
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC--CCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ--TGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~ 113 (207)
+..+++.....++..|||+|+|.|.++..+++.+ .+++++|+++...+..++++...+++.++..|+.++.... ...
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~ 97 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ 97 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence 4455555544444599999999999999999997 5999999999999999998886689999999999984221 235
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
...|+++-++
T Consensus 98 ~~~vv~NlPy 107 (262)
T PF00398_consen 98 PLLVVGNLPY 107 (262)
T ss_dssp EEEEEEEETG
T ss_pred ceEEEEEecc
Confidence 5677777554
No 217
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.3e-06 Score=71.99 Aligned_cols=97 Identities=23% Similarity=0.270 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccC--CCCeeEEEeCcc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQ--TGSFDSVVDKGT 122 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~--~~~fD~v~~~~~ 122 (207)
+..+|||+=||.|.++..+++... +|+|+|+++++++.|+++.+.+ .|+.|..+++.+..+.. ...+|.|+...+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 434899999999999999997754 9999999999999999998743 67999999999974322 357899996543
Q ss_pred hhhhccCCCChhhHH-HHHHHHHHhcCCCcEEEE
Q 028547 123 LDSLLCGSNSRQNAT-QMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 123 l~~~~~~~~~~~~~~-~~l~~~~~~L~pgG~~~~ 155 (207)
= .... .+++.+.+ ++|..++|+
T Consensus 372 R----------~G~~~~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 372 R----------AGADREVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred C----------CCCCHHHHHHHHh-cCCCcEEEE
Confidence 2 3334 44444444 466666665
No 218
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.47 E-value=3.7e-06 Score=66.72 Aligned_cols=107 Identities=12% Similarity=0.208 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHh----cC-CCcEEEEeCCHHHHHHHHHHcc-CC-CCceE--EEeccccccc-cC---
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVD----DG-YEDVVNVDISSVVIEAMMKKYS-NR-PQLKY--IKMDVRQMDE-FQ--- 110 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~----~~-~~~v~~~D~s~~~i~~~~~~~~-~~-~~~~~--~~~d~~~~~~-~~--- 110 (207)
++... .++|+|||+|.=+..+.+ .+ ...++++|+|.++++.+.+++. .. +.+.+ +++|..+... .+
T Consensus 74 i~~~~-~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 74 IPSGS-MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred cCCCC-EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccc
Confidence 44444 899999999966554433 22 2489999999999999999887 33 56665 6777766411 11
Q ss_pred -CCCeeEEEe-CcchhhhccCCCChhhHHHHHHHHHH-hcCCCcEEEEE
Q 028547 111 -TGSFDSVVD-KGTLDSLLCGSNSRQNATQMLKEVWR-VLKDKGVYILV 156 (207)
Q Consensus 111 -~~~fD~v~~-~~~l~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~~~~~ 156 (207)
.....+++. ...+..+ .......+|+++++ .|+|||.|++-
T Consensus 153 ~~~~~r~~~flGSsiGNf-----~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNF-----SRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred ccCCccEEEEeCccccCC-----CHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 223455554 2344444 67888999999999 99999988774
No 219
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.40 E-value=5.3e-06 Score=66.56 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC---------------------------------C-------cEEEEeCCHHHHHH
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY---------------------------------E-------DVVNVDISSVVIEA 85 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~---------------------------------~-------~v~~~D~s~~~i~~ 85 (207)
++...++|.-||+|.++++.+..+. + .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 3335899999999999998887652 0 27799999999999
Q ss_pred HHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhh----HHHHHHHHHHhcCCCcEEEEEE
Q 028547 86 MMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQN----ATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 86 ~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~----~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.|.... .-|.|.++|+..+.+ +.+.+|+|+++.++.-- ...... ...+.+.+.+.++.-+.+++++
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPYGeR---lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE-PLEEYGVVISNPPYGER---LGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC-CCCcCCEEEeCCCcchh---cCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99997743 469999999999842 22789999999887532 112222 3334444456666666777665
No 220
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=3.9e-06 Score=62.44 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccc-----ccCCCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD-----EFQTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~-----~~~~~~fD~v 117 (207)
++++||+|.=+|+-+..++..-+ .+|+++|++++..+...+..+.. ..+.++++.+.+.. ....++||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 35999999999987777766532 49999999999999887655422 46889998877741 1246799999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|. ++. ........+++.+++|+||++++-.
T Consensus 154 Fv----Dad------K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FV----DAD------KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----ccc------hHHHHHHHHHHHhhcccccEEEEec
Confidence 94 443 2344588999999999999999854
No 221
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.39 E-value=7.4e-06 Score=57.85 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=71.9
Q ss_pred EEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCC--ceEEEecccc-ccccCC-CCeeEEEeCcchh
Q 028547 51 ILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQ--LKYIKMDVRQ-MDEFQT-GSFDSVVDKGTLD 124 (207)
Q Consensus 51 vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~--~~~~~~d~~~-~~~~~~-~~fD~v~~~~~l~ 124 (207)
++|+|||+|... .+..... ..++++|+++.++..++........ +.+...+... ..++.. ..||++......+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999965 3333322 2788999999998885554422111 5788888776 234555 4899995444444
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+. . ....+.++.+.++|+|.+++......
T Consensus 131 ~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LL-------P-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cC-------C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 33 2 78899999999999999999875443
No 222
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.38 E-value=2.3e-06 Score=72.91 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=55.6
Q ss_pred CcEEEEcCCCchhhHHHHhcC--------C-CcEEEEeCCHHHHHHHHHHccCCC--CceEEEecccccc----ccCCCC
Q 028547 49 QRILIVGCGNSAFSEGMVDDG--------Y-EDVVNVDISSVVIEAMMKKYSNRP--QLKYIKMDVRQMD----EFQTGS 113 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~--------~-~~v~~~D~s~~~i~~~~~~~~~~~--~~~~~~~d~~~~~----~~~~~~ 113 (207)
.+|||.|||+|.++..++... . .+++|+|+++.++..++.++.... .+.+.+.|..... ....+.
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~ 112 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLDL 112 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccCc
Confidence 389999999999998887642 1 378999999999999988765432 3444544433210 112358
Q ss_pred eeEEEeCcchhhh
Q 028547 114 FDSVVDKGTLDSL 126 (207)
Q Consensus 114 fD~v~~~~~l~~~ 126 (207)
||+|+++.++..+
T Consensus 113 fD~IIgNPPy~~~ 125 (524)
T TIGR02987 113 FDIVITNPPYGRL 125 (524)
T ss_pred ccEEEeCCCcccc
Confidence 9999999988754
No 223
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.36 E-value=2.6e-06 Score=63.40 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=66.4
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHcc-----------CCCCceEEEec
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-----------NRPQLKYIKMD 102 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~-----------~~~~~~~~~~d 102 (207)
.+..+++.....+...++|||||.|......+.. ++...+|+|+.+...+.++.... ....+.+..+|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 3556666554444459999999999988776654 55569999999987766654221 12457788888
Q ss_pred ccccccc--CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 103 VRQMDEF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 103 ~~~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
+.+.... .-...|+|++++.... ++....+.+....||+|..++-
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F~--------~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCFD--------PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccHhHhhhhcCCCEEEEeccccC--------HHHHHHHHHHHhcCCCCCEEEE
Confidence 8764210 1135799999876542 4666677888888888766654
No 224
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.36 E-value=4.7e-06 Score=65.07 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCCCCceE---EEeccccccccCCCCeeEEEeCc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKY---IKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.+.+|||+|||+|.-+-.+.+. ...+++++|.|+.+++.++..+....+... ......+.. +....|+|++..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL--PFPPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc--cCCCCcEEEEeh
Confidence 3459999999999755443332 235999999999999998886654322111 111111111 222349999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+|..+ +......+++++.+.+++ .++++..+.+
T Consensus 111 ~L~EL-----~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 111 VLNEL-----PSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred hhhcC-----CchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 98887 226677888888887765 7777765544
No 225
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.35 E-value=2.2e-06 Score=59.36 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=63.2
Q ss_pred cEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC-CeeEEEeCcchhhhccCC----CChhhHHHHHHHH
Q 028547 72 DVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG-SFDSVVDKGTLDSLLCGS----NSRQNATQMLKEV 143 (207)
Q Consensus 72 ~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~-~fD~v~~~~~l~~~~~~~----~~~~~~~~~l~~~ 143 (207)
+|+++|+.+++++..++++.+. .++.++..+-.++..+-+. ++|+++.+ +.++..+. ...+.....++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999998743 4699999888887544444 89999987 66663222 2345788899999
Q ss_pred HHhcCCCcEEEEEEeCCc
Q 028547 144 WRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 144 ~~~L~pgG~~~~~~~~~~ 161 (207)
.+.|+|||.+.++.|.+.
T Consensus 79 l~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHEEEEEEEEEEE--ST
T ss_pred HHhhccCCEEEEEEeCCC
Confidence 999999999999998654
No 226
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.34 E-value=1.3e-06 Score=70.26 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=83.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.++|+|||.|.....++..+.+.++|+|.++..+..+....... ....++..|+.+. ++++..||.+.+.....|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-~fedn~fd~v~~ld~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-PFEDNTFDGVRFLEVVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-CCCccccCcEEEEeecccC
Confidence 79999999999999998887679999999998777665543321 2344577888888 7899999999998888887
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+....+++++++++|||.++...
T Consensus 192 -------~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 192 -------PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred -------CcHHHHHHHHhcccCCCceEEeHH
Confidence 889999999999999999999865
No 227
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.33 E-value=1.5e-06 Score=62.65 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=75.9
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+.|+|+|+|.++...++. ..+|++++.+|...+.+.+++. ...|+.++.+|+.+.. | +..|+|+|-. ++..+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEm-lDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEM-LDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHH-hhHHh
Confidence 8999999999999988887 5599999999999999999854 4478999999999984 5 5679999763 33321
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
- .+.....+..+...||.++.++-
T Consensus 110 i----~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 I----EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred h----cccccHHHHHHHHHhhcCCcccc
Confidence 1 13455667777778888887764
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.32 E-value=9.6e-06 Score=71.30 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-------------------------------------------CCcEEEEeCCHHHHH
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-------------------------------------------YEDVVNVDISSVVIE 84 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-------------------------------------------~~~v~~~D~s~~~i~ 84 (207)
+..++|.+||+|.++++.+... ..+++|+|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 3499999999999998876520 025899999999999
Q ss_pred HHHHHccCC---CCceEEEeccccccc-cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcC---CCcEEEEEE
Q 028547 85 AMMKKYSNR---PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK---DKGVYILVT 157 (207)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~---pgG~~~~~~ 157 (207)
.|++++... ..+.|.++|+.+... ...++||+|+++.++..-. ....+...+.+.+.+.++ +|+.+++.+
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~---~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERL---GEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCcc---CchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 999997743 357899999988731 2235799999998875321 112344445455444444 888887766
No 229
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.30 E-value=6.4e-06 Score=65.26 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
++.++||+||++|.++..+.+.|. .|++||..+- ...+...+++.....|.....| +.+.+|.++|..+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l-----~~~L~~~~~V~h~~~d~fr~~p-~~~~vDwvVcDmv---- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM-----AQSLMDTGQVEHLRADGFKFRP-PRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc-----CHhhhCCCCEEEEeccCcccCC-CCCCCCEEEEecc----
Confidence 445999999999999999999988 9999996551 2223344688888888887743 2678999998744
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCC
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDK 150 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pg 150 (207)
..+....+-+.++|..|
T Consensus 280 -------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -------EKPARVAELMAQWLVNG 296 (357)
T ss_pred -------cCHHHHHHHHHHHHhcC
Confidence 44567777788888765
No 230
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.29 E-value=1.8e-05 Score=58.93 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=81.6
Q ss_pred eeecCccCHHHHHHhhC----CCCCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEe
Q 028547 28 DWYQKYPSLAPLIKLYV----PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM 101 (207)
Q Consensus 28 ~~~~~~~~~~~~l~~~~----~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~ 101 (207)
.|.+..+.+...+..-+ -+++.+||-+|+++|....+++.- + -..|++||.|+...+..-.-....+|+--+..
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~ 129 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE 129 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec
Confidence 46666666776664322 233449999999999888887774 3 24899999999765555444444478888999
Q ss_pred ccccccccC--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 102 DVRQMDEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 102 d~~~~~~~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.....+. -+.+|+|++. +.. +....-++.++...||+||.++++.
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~D--VaQ-------p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQD--VAQ-------PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE---SS-------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEec--CCC-------hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999863332 3589999975 211 2677788888899999999999875
No 231
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.29 E-value=2.4e-07 Score=67.68 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+.++||+|+|.|..+..++.. +.+|++.+.|..|+...+++- .. +....+.. ..+-+||+|.|.+.++.-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~-----yn--Vl~~~ew~-~t~~k~dli~clNlLDRc- 182 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN-----YN--VLTEIEWL-QTDVKLDLILCLNLLDRC- 182 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC-----Cc--eeeehhhh-hcCceeehHHHHHHHHhh-
Confidence 359999999999999988876 459999999999999988752 22 22233331 234579999998888854
Q ss_pred cCCCChhhHHHHHHHHHHhcCC-CcEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKD-KGVYILV 156 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~p-gG~~~~~ 156 (207)
.++-.+++.++.+|+| +|.+++.
T Consensus 183 ------~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 183 ------FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ------cChHHHHHHHHHHhccCCCcEEEE
Confidence 6788999999999999 7887764
No 232
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.28 E-value=3.9e-06 Score=65.82 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=85.6
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc-cCCCCeeEE
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-FQTGSFDSV 117 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~-~~~~~fD~v 117 (207)
+.+.++.+|||++++.|.=+..+++... ..++++|+++.-+...+.+.... .++.....|..+..+ .....||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 3445556999999999988888887632 59999999999998888876633 577777788887632 234469999
Q ss_pred EeCcchhhhccCC-CC--------------hhhHHHHHHHHHHhc----CCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGS-NS--------------RQNATQMLKEVWRVL----KDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~-~~--------------~~~~~~~l~~~~~~L----~pgG~~~~~~~ 158 (207)
+...+......-. .+ ......+|+.+.+.+ +|||.++++|+
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 9876655442111 11 124778899999999 99999999996
No 233
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.28 E-value=3.5e-06 Score=62.36 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=70.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---CCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~v~~~~~l~~ 125 (207)
.++|||||=+....+.- .+.-.|+.+|+.+ ....+.+.|+.+. |. ..+.||+|.++.++.+
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns-------------~~~~I~qqDFm~r-plp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNS-------------QHPGILQQDFMER-PLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCC-------------CCCCceeeccccC-CCCCCcccceeEEEEEEEEee
Confidence 49999999766554432 2333799999977 2456788899986 44 4679999999999998
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcE-----EEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGV-----YILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~-----~~~~~~ 158 (207)
+ ++.......++++++.|+|+|. ++++..
T Consensus 117 V----P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 117 V----PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred C----CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 7 3457889999999999999999 887763
No 234
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.23 E-value=4e-06 Score=67.78 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=54.9
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc-----------
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE----------- 108 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 108 (207)
..+...+..|||+-||.|.++..+++... +|+|+|+++.+++.|++++.. ..|+.|+.+++.+...
T Consensus 191 ~~l~~~~~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~ 269 (352)
T PF05958_consen 191 EWLDLSKGDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRL 269 (352)
T ss_dssp HHCTT-TTEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTG
T ss_pred HHhhcCCCcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhh
Confidence 33443333899999999999999998854 999999999999999998873 3789999887654310
Q ss_pred ----cCCCCeeEEEeCcchh
Q 028547 109 ----FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 109 ----~~~~~fD~v~~~~~l~ 124 (207)
.....+|+|+..++=.
T Consensus 270 ~~~~~~~~~~d~vilDPPR~ 289 (352)
T PF05958_consen 270 KGIDLKSFKFDAVILDPPRA 289 (352)
T ss_dssp GGS-GGCTTESEEEE---TT
T ss_pred hhhhhhhcCCCEEEEcCCCC
Confidence 1123689998664433
No 235
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.21 E-value=1.6e-06 Score=63.88 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=60.0
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--C-CCceEEEeccccc---cccCCCCeeEEEeCcch
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQM---DEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~-~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~l 123 (207)
.|+|.-||.|..+...+..++ .|+++|+++.-|..|+.+++- . .++.|+++|+.+. +.+....+|+|+.+++.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCCC
Confidence 899999999988888888877 999999999999999999872 1 4899999999985 22344557788876554
Q ss_pred h
Q 028547 124 D 124 (207)
Q Consensus 124 ~ 124 (207)
.
T Consensus 176 g 176 (263)
T KOG2730|consen 176 G 176 (263)
T ss_pred C
Confidence 4
No 236
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.21 E-value=2.7e-05 Score=61.84 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=80.4
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHc--c-------CCCCceEEEeccccccccCCCCeeEEE
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
.+||-+|.|.|.-+.++.+.. ..+++-+|.+|++++.++++. . ..++++++..|+.++..-..+.||+||
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 499999999999999999985 579999999999999998431 1 126889999999997444567999999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.... +.- ......-.-..+..-+.+.|+++|.+++..
T Consensus 371 VDl~-DP~-tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 371 VDLP-DPS-TPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EeCC-CCC-CcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 6421 100 000122356778888899999999999854
No 237
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=9.3e-06 Score=60.61 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCC-eeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGS-FDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~-fD~v~~~~~l 123 (207)
+.+++|||+|.|-=+.-++-..+ .+++.+|....-+.+.+.-.. +.+|+++++..+.+... ... ||+|.+..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~--~~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ--EKKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc--ccccCcEEEeehc-
Confidence 35999999999977777664332 379999998877777666544 33689999999999842 223 999998854
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+.+-+..++++||.++..-
T Consensus 145 ----------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 145 ----------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ----------cchHHHHHHHHHhcccCCcchhhh
Confidence 556788888999999998876433
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2.7e-05 Score=58.39 Aligned_cols=109 Identities=19% Similarity=0.292 Sum_probs=75.5
Q ss_pred HHHHHHhh-CCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCc-eEEEecccccccc-CCC
Q 028547 36 LAPLIKLY-VPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQL-KYIKMDVRQMDEF-QTG 112 (207)
Q Consensus 36 ~~~~l~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~-~~~~~d~~~~~~~-~~~ 112 (207)
+..+++.+ +...++.+||+|+-||.++..+.+.|.+.|+++|.....++.--+. .+++ .+...|+..+.+. -.+
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---DPRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---CCcEEEEecCChhhCCHHHccc
Confidence 34444443 2334459999999999999999999999999999988766654333 2232 3334566654221 123
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..|++++.-.+-. ...++..+..+++++|-++...
T Consensus 144 ~~d~~v~DvSFIS----------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 144 KPDLIVIDVSFIS----------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CCCeEEEEeehhh----------HHHHHHHHHHhcCCCceEEEEe
Confidence 6788998754443 4888999999999998887754
No 239
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=1.4e-05 Score=58.13 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=73.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
++|||+|+|+|.-++..+..|...|...|+.+..++...-|...+ .++.+...|..- .+..||+++...++..-
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlfy~~- 155 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLFYNH- 155 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeeceecCc-
Confidence 599999999999999999998889999999998888877776643 567777777665 35689999998877642
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.....++. ..+.|+..|.-+++
T Consensus 156 ------~~a~~l~~-~~~~l~~~g~~vlv 177 (218)
T COG3897 156 ------TEADRLIP-WKDRLAEAGAAVLV 177 (218)
T ss_pred ------hHHHHHHH-HHHHHHhCCCEEEE
Confidence 56666666 55556665665553
No 240
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.12 E-value=3.4e-05 Score=57.51 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=73.1
Q ss_pred EEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 51 ILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 51 vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
|.|+||.-|.+...+.+.+. ..++++|+++..++.|++++... ..+.+..+|..+..+ +.+..|.|+..++=.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG-- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG-- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCH--
Confidence 68999999999999999986 58999999999999999987632 578999999877521 333478888766533
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
.-...++++....++....|++..........+++
T Consensus 78 -------~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L 112 (205)
T PF04816_consen 78 -------ELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWL 112 (205)
T ss_dssp -------HHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHH
T ss_pred -------HHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHH
Confidence 56777787777777665566665544433333333
No 241
>PRK10742 putative methyltransferase; Provisional
Probab=98.10 E-value=1.6e-05 Score=60.39 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=59.9
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-----------CCceEEEeccccccccCCCCeeEEE
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-----------PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+|||+-+|+|..+..++..|+ +|+++|-++......+..+... .++++++.|..++......+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 899999999999999999998 6999999998777666554321 3578888888886433345799999
Q ss_pred eCcchhh
Q 028547 119 DKGTLDS 125 (207)
Q Consensus 119 ~~~~l~~ 125 (207)
...++.+
T Consensus 170 lDPMfp~ 176 (250)
T PRK10742 170 LDPMFPH 176 (250)
T ss_pred ECCCCCC
Confidence 8877755
No 242
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=8.4e-05 Score=56.77 Aligned_cols=108 Identities=14% Similarity=0.198 Sum_probs=79.3
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF 109 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~ 109 (207)
.+..++..+.-.++.+|+|-|.|+|.++..+++. ++ .+++.+|+-+.-.+.+.+.++.. .++.+.+-|++..- |
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G-F 171 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG-F 171 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC-c
Confidence 3555565555566669999999999999999886 33 59999999988888888777642 68999999999862 3
Q ss_pred C--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 110 Q--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 110 ~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
. ...+|.|+...+- +-.++..++++|+.+|.-++
T Consensus 172 ~~ks~~aDaVFLDlPa------------Pw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLPA------------PWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccccceEEEcCCC------------hhhhhhhhHHHhhhcCceEE
Confidence 3 5689999965433 33355556778888775333
No 243
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=5.8e-05 Score=54.52 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=66.1
Q ss_pred CcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccccc-------cccCCCCeeEEE
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQM-------DEFQTGSFDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~~~-------~~~~~~~fD~v~ 118 (207)
.+|||+||.+|.+++...+.- + .-|.|+|+.. +...+...++++ |+.+. ...++...|+|+
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVl 141 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVL 141 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEE
Confidence 499999999999999888863 3 5899999855 222234455554 66663 224778999999
Q ss_pred eCcchhhhccCCCChhhHHHHH-------HHHHHhcCCCcEEEEEEeCCcc
Q 028547 119 DKGTLDSLLCGSNSRQNATQML-------KEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l-------~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+.+.-..-+.. ..|....+ .-....++|+|.|++-.+.+..
T Consensus 142 SDMapnaTGvr---~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 142 SDMAPNATGVR---IRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred eccCCCCcCcc---hhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 87543322111 12333333 3335667899999998875543
No 244
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=3.9e-05 Score=59.66 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=75.5
Q ss_pred cCHHHHHHhhCCCC-----CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc---c--C-----------
Q 028547 34 PSLAPLIKLYVPSH-----HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY---S--N----------- 92 (207)
Q Consensus 34 ~~~~~~l~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~---~--~----------- 92 (207)
+.+.+.|..+.+.. .-+||-.|||.|+++..++..|+ ...|-|.|--|+-...=.+ . +
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence 34555555554442 12999999999999999999988 6677677665433221000 0 0
Q ss_pred --------------C------------CCceEEEeccccccc--cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHH
Q 028547 93 --------------R------------PQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVW 144 (207)
Q Consensus 93 --------------~------------~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~ 144 (207)
. .+.....+|+.+.-+ -..+.||+|+....++.- .+.-..++.+.
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa-------~NileYi~tI~ 283 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA-------HNILEYIDTIY 283 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech-------HHHHHHHHHHH
Confidence 0 012224456666411 123479999987666654 88999999999
Q ss_pred HhcCCCcEEEEEE
Q 028547 145 RVLKDKGVYILVT 157 (207)
Q Consensus 145 ~~L~pgG~~~~~~ 157 (207)
++|+|||+++-..
T Consensus 284 ~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 284 KILKPGGVWINLG 296 (369)
T ss_pred HhccCCcEEEecc
Confidence 9999999987643
No 245
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00027 Score=51.81 Aligned_cols=123 Identities=16% Similarity=0.251 Sum_probs=88.0
Q ss_pred ceeeecCccCHHHHHHhhC----CCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE
Q 028547 26 PFDWYQKYPSLAPLIKLYV----PSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK 100 (207)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~----~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~ 100 (207)
.-.|....+.+...+..-+ -+++.+||-+|+.+|....+++.- +...+++++.|+......-..+.+.+|+.-+.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL 130 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPIL 130 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeee
Confidence 3356666666666554322 234459999999999888888775 22489999999988777666666667888888
Q ss_pred ecccccccc--CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 101 MDVRQMDEF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 101 ~d~~~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+.....+ --+..|+|+.. +. .+....-+..++...|++||.++++.
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~D--VA-------Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQD--VA-------QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cccCCcHHhhhhcccccEEEEe--cC-------CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 999886332 23568999864 11 23677888899999999999766643
No 246
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.90 E-value=3.8e-05 Score=53.84 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=46.8
Q ss_pred cEEEEcCCCchhhHHHHhcCCC-cEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQM 106 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~-~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~ 106 (207)
+|||+|||.|.++..+++.+.. +++++|+++.+.+.+++++... .++.+++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 4899999999999999988763 7999999999999999987632 4677777666653
No 247
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.89 E-value=0.0001 Score=56.73 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=70.6
Q ss_pred CcEEEEcCCC--chhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCCCC--ceEEEeccccccccC-----CCCee--
Q 028547 49 QRILIVGCGN--SAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQ--LKYIKMDVRQMDEFQ-----TGSFD-- 115 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~~~--~~~~~~d~~~~~~~~-----~~~fD-- 115 (207)
..+||||||- ....-++++. .+ ++|.-+|.++..+..++..+...++ ..++.+|+.+....- .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5899999994 2344455543 22 5999999999999999998887666 889999999852111 12233
Q ss_pred ---EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 116 ---SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 116 ---~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.+++..++|++ .+.++...++..+...|.||..+.++.....
T Consensus 150 rPVavll~~vLh~v----~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 150 RPVAVLLVAVLHFV----PDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp S--EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCeeeeeeeeeccC----CCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 56677788887 3446899999999999999999999886554
No 248
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.89 E-value=0.00021 Score=50.10 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=51.4
Q ss_pred CCcEEEEcCCCchhhHHHHh-----cCCCcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccccccCCCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVD-----DGYEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~-----~~~~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
...|+|+|||.|+++..++. ....+|+++|.++..++.+.++.... .+..+...++.+.. .....+++
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 103 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPDIL 103 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCeEE
Confidence 34999999999999999998 42249999999999988887765421 35666666655542 24556777
Q ss_pred Ee
Q 028547 118 VD 119 (207)
Q Consensus 118 ~~ 119 (207)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 75
No 249
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.87 E-value=0.00016 Score=58.45 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=83.7
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccc--cccCCCCeeE
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQM--DEFQTGSFDS 116 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~--~~~~~~~fD~ 116 (207)
+.++++.+|||+++..|.=+.+++.. +-..|++.|.+..-+...+.++... .|..+.+.|..++ ..++. +||.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 34555569999999998666666553 1248999999999888888877643 5777778888765 12344 8999
Q ss_pred EEeCcchhhhccCCC---------------ChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSN---------------SRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~---------------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+...+......... -..-+.++|..+.+++++||+++.+|++-.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 997766554211110 112467788888999999999999997543
No 250
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.84 E-value=0.00028 Score=54.80 Aligned_cols=103 Identities=15% Similarity=0.275 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCchhh-HHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC----CCCceEEEeccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFS-EGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~-~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.+|+=||||.=-++ ..+++. +. ..++++|+++++++.+++-... ..++.|+.+|..+. ......||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~-~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV-TYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc-ccccccCCEEEEh
Confidence 349999999975444 444433 32 4799999999999999886552 25789999999877 3445789999976
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..... ..+....+++++.+.++||..+++-.
T Consensus 200 alVg~------~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGM------DAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhccc------ccchHHHHHHHHHhhCCCCcEEEEec
Confidence 54431 33578899999999999999988875
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.83 E-value=1.5e-05 Score=53.05 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=44.2
Q ss_pred EEEcCCCchhhHHHHhcC---C-CcEEEEeCCHH---HHHHHHHHccCCCCceEEEeccccccc-cCCCCeeEEEeCcch
Q 028547 52 LIVGCGNSAFSEGMVDDG---Y-EDVVNVDISSV---VIEAMMKKYSNRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (207)
Q Consensus 52 LdiG~G~G~~~~~l~~~~---~-~~v~~~D~s~~---~i~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l 123 (207)
||+|+..|..+..+++.- . .+++++|..+. ..+..++ ..-..+++++.++..+..+ ++.+++|+|+..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 689999998888877642 1 37999999984 3233322 1112479999999877522 33579999997642
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
| ........++.+.+.|+|||++++-+
T Consensus 79 H-------~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 H-------SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-------CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 12567778889999999999988754
No 252
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.0011 Score=51.75 Aligned_cols=85 Identities=12% Similarity=0.220 Sum_probs=66.0
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccc----c
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMD----E 108 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~----~ 108 (207)
+.+.+..+..++....+|.--|.|..+..+++... +.++++|-++.+++.+++++... .++.+++.++.++. .
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~ 91 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKE 91 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHh
Confidence 45667766666666999999999999999998864 57999999999999999988753 68999998877752 1
Q ss_pred cCCCCeeEEEeC
Q 028547 109 FQTGSFDSVVDK 120 (207)
Q Consensus 109 ~~~~~fD~v~~~ 120 (207)
...+.+|-|+..
T Consensus 92 ~~i~~vDGiL~D 103 (314)
T COG0275 92 LGIGKVDGILLD 103 (314)
T ss_pred cCCCceeEEEEe
Confidence 223566666644
No 253
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.71 E-value=0.00056 Score=50.87 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=77.0
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCe
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (207)
.+..+.+... ++.|+||.-|++...+.+.+. ..+++.|+++..++.|.+++... ..++...+|..... ..++.+
T Consensus 9 ~va~~V~~~~-~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~d~~ 86 (226)
T COG2384 9 TVANLVKQGA-RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELEDEI 86 (226)
T ss_pred HHHHHHHcCC-ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-CccCCc
Confidence 3445555665 799999999999999999875 58999999999999999988754 45666677775542 244589
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
|.|+..++=. .-+..++++-.+.|+.--.+++
T Consensus 87 d~ivIAGMGG---------~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 87 DVIVIAGMGG---------TLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CEEEEeCCcH---------HHHHHHHHHhhhhhcCcceEEE
Confidence 9888765533 4567777777777763323443
No 254
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.70 E-value=0.00011 Score=53.86 Aligned_cols=107 Identities=14% Similarity=0.224 Sum_probs=68.4
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc-------C--CCCceEEEeccccccc--cCCCCee-E
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS-------N--RPQLKYIKMDVRQMDE--FQTGSFD-S 116 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~-------~--~~~~~~~~~d~~~~~~--~~~~~fD-~ 116 (207)
.+.|||||-|.++..++...+ +-+.|++|--..-+..+.+.. . ..|+.+...+.....| +..+... .
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 789999999999999999876 588899987777666666543 1 2578888888877633 2222222 1
Q ss_pred EEeCcchhhhccCC-CChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.++..--|.. ... ...--...++.+..-+|++||.++.++
T Consensus 143 ff~fpdpHfk-~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFPDPHFK-ARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecCChhHh-hhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 2222111111 000 011134556777888999999999877
No 255
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.63 E-value=0.00038 Score=54.89 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=65.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccc----c
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE----F 109 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~----~ 109 (207)
+.+.++.+..+++..++|.-+|.|..+..+++.. ..+|+|+|.++.+++.+++++... .++.+++.++.++.. .
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 4466666655555599999999999999998863 259999999999999999887643 578999998887521 1
Q ss_pred CCCCeeEEEeC
Q 028547 110 QTGSFDSVVDK 120 (207)
Q Consensus 110 ~~~~fD~v~~~ 120 (207)
...++|.|+..
T Consensus 89 ~~~~vDgIl~D 99 (305)
T TIGR00006 89 LVTKIDGILVD 99 (305)
T ss_pred CCCcccEEEEe
Confidence 33568888866
No 256
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.62 E-value=0.00022 Score=55.93 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=42.9
Q ss_pred cEEEEcCCCchhhHHH-Hh-cCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEec----cccccccCCCCeeEEEe
Q 028547 50 RILIVGCGNSAFSEGM-VD-DGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMD----VRQMDEFQTGSFDSVVD 119 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l-~~-~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d----~~~~~~~~~~~fD~v~~ 119 (207)
++||||+|....-..+ ++ .++ +++|.|+++..++.|++++... .+|.++... +........+.||+++|
T Consensus 105 ~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred EeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 8999999986443333 32 366 9999999999999999987643 356666543 22211123568999999
Q ss_pred Ccchhh
Q 028547 120 KGTLDS 125 (207)
Q Consensus 120 ~~~l~~ 125 (207)
+.+++.
T Consensus 184 NPPFy~ 189 (299)
T PF05971_consen 184 NPPFYS 189 (299)
T ss_dssp -----S
T ss_pred CCcccc
Confidence 998875
No 257
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00032 Score=58.18 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=57.5
Q ss_pred eecCccCHHHHHHhh----C-CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEe
Q 028547 29 WYQKYPSLAPLIKLY----V-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKM 101 (207)
Q Consensus 29 ~~~~~~~~~~~l~~~----~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~ 101 (207)
+++......+.+-.+ . -+.++.++|+.||||.++..+++. ...|+|++++++++..|+++.... .|.+|+++
T Consensus 360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeec
Confidence 455544444444322 2 233359999999999999998887 459999999999999999987743 79999999
Q ss_pred ccccc
Q 028547 102 DVRQM 106 (207)
Q Consensus 102 d~~~~ 106 (207)
-+.+.
T Consensus 439 qaE~~ 443 (534)
T KOG2187|consen 439 QAEDL 443 (534)
T ss_pred chhhc
Confidence 66654
No 258
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.55 E-value=0.0006 Score=53.35 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=60.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC-CCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~fD~v~~~~~l~~~~ 127 (207)
+|+|+.||.|.++.-+.+.|+..+.++|+++.+++..+.++.. .+++.|+.+..+.. ...+|+++...+...++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----CCccCccccCchhhcCCCCCEEEeCCCChhhh
Confidence 6899999999999988888887889999999999999998754 26677888874322 45799999998877664
No 259
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=5e-05 Score=53.55 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=71.8
Q ss_pred CcEEEEcCCCchhhHHH-HhcC-CCcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccc-cccCCCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGM-VDDG-YEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQM-DEFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l-~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~-~~~~~~~fD~v~~~ 120 (207)
++|||+|.|--.++-.| +... ...|...|-+++.++..++..-.. .++.....+.... ......+||+|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 49999999965554444 3332 258899999999988887753321 2232222222221 11245689999998
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
.++..- +....+.+.|...|+|.|..++........
T Consensus 111 DClFfd-------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~s 146 (201)
T KOG3201|consen 111 DCLFFD-------EHHESLVDTIKSLLRPSGRALLFSPRRGQS 146 (201)
T ss_pred cchhHH-------HHHHHHHHHHHHHhCcccceeEecCcccch
Confidence 887754 788899999999999999977655433333
No 260
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00064 Score=52.71 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccc-cCCCCeeE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDE-FQTGSFDS 116 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~-~~~~~fD~ 116 (207)
..++++||-+|.|.|......++... .++..+|++...++..++.++. .+++.+..+|...+.. ...++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34455999999999998887777643 6999999999999998887652 2678888998887632 34789999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.... + . -++........+++-+.+.||+||+..+..
T Consensus 199 ii~dss-d-p-vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSS-D-P-VGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecC-C-c-cchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 995310 0 0 111223577888999999999999998864
No 261
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.35 E-value=0.00075 Score=51.34 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+. +|+|||||.=-++.-...... ..|+++|++..+++.....+... .+..+...|+... .+....|+.+..=+
T Consensus 104 ~~p~-sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~--~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 104 PPPD-SVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD--PPKEPADLALLLKT 180 (251)
T ss_dssp ---S-EEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS--HTTSEESEEEEET-
T ss_pred CCCc-hhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc--CCCCCcchhhHHHH
Confidence 3444 999999998777765555432 49999999999999988865522 5777888888876 26778999998777
Q ss_pred hhhh
Q 028547 123 LDSL 126 (207)
Q Consensus 123 l~~~ 126 (207)
++.+
T Consensus 181 lp~l 184 (251)
T PF07091_consen 181 LPCL 184 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.33 E-value=0.0029 Score=46.97 Aligned_cols=110 Identities=18% Similarity=0.103 Sum_probs=64.6
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc--C-CCcEEEEeCCHHHHHHHHHHccCC-----------------------------
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD--G-YEDVVNVDISSVVIEAMMKKYSNR----------------------------- 93 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~--~-~~~v~~~D~s~~~i~~~~~~~~~~----------------------------- 93 (207)
+.+-++.|.+||+|+++-.+.-. . ...|++.|+++++++.|++|+.-.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 33349999999999988766443 1 258999999999999998765210
Q ss_pred ---------------CCceEEEeccccccc----cCCCCeeEEEeCcchhhhc--cCCCChhhHHHHHHHHHHhcCCCcE
Q 028547 94 ---------------PQLKYIKMDVRQMDE----FQTGSFDSVVDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 94 ---------------~~~~~~~~d~~~~~~----~~~~~fD~v~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
......+.|+.+..+ -.....|+|+..-++..+. -++.+..-...++..++++|-++++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 124567778887421 1234469999887766554 1223556788899999999954555
Q ss_pred EEE
Q 028547 153 YIL 155 (207)
Q Consensus 153 ~~~ 155 (207)
+.+
T Consensus 210 V~v 212 (246)
T PF11599_consen 210 VAV 212 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 263
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0022 Score=44.75 Aligned_cols=100 Identities=12% Similarity=0.209 Sum_probs=69.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc---CCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+.+|+|+|.|+.-...++.+...-+|+|+++-.+..++-..- -....+|...|+.+.+ .. .|..|+.++.-
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d-l~--dy~~vviFgae-- 148 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD-LR--DYRNVVIFGAE-- 148 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-cc--ccceEEEeehH--
Confidence 4999999999999999999885588999999998888765432 2257889998988873 33 34444433221
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.-...+-.++..-+..+..++-.-|.-|
T Consensus 149 --------s~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 149 --------SVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred --------HHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 2334555666777777777776554443
No 264
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.30 E-value=0.00029 Score=58.44 Aligned_cols=121 Identities=16% Similarity=0.283 Sum_probs=78.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCH----HHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISS----VVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~----~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.|+|..+|.|.++..|.+.. |..+...+ ..+.....+ .+.=.-.|..+.-+.-+.+||+|.+.+++.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydR-----GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDR-----GLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhc-----ccchhccchhhccCCCCcchhheehhhhhh
Confidence 489999999999999998774 33333332 222222221 122233467764344568999999998877
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccccCCCCceEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (207)
.. ...-....++-++.|+|+|+|.+++-+...-....+.+.....|....+..
T Consensus 439 ~~----~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 439 LY----KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred hh----cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEec
Confidence 65 223467889999999999999999976433333333345566788765544
No 265
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.29 E-value=0.00063 Score=51.46 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=47.2
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHH---HHcc---CC-----CCceEEEeccccccccCCCCeeEEE
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM---KKYS---NR-----PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~---~~~~---~~-----~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+|||.-+|-|..+..++..|+ +|+++|-++-+....+ ++.. .. .++++++.|..++...+..+||+|+
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 899999999999999998887 9999999996544333 2221 11 3689999999997556678999999
Q ss_pred eCcchhh
Q 028547 119 DKGTLDS 125 (207)
Q Consensus 119 ~~~~l~~ 125 (207)
...++.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 8877764
No 266
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=97.28 E-value=0.0001 Score=56.79 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHH-c------c--CCCC---ceEEEe---ccccccccC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK-Y------S--NRPQ---LKYIKM---DVRQMDEFQ 110 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~-~------~--~~~~---~~~~~~---d~~~~~~~~ 110 (207)
-..++|||+|||+|.....+...+...+...|.+.+.++..... . . ...+ ...... |..-.. ..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~-t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH-TE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh-cc
Confidence 34459999999999999988888755888888888776322110 0 0 0011 111122 221110 01
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHH-HHHHHHhcCCCcEEEEEE
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQM-LKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~~~~~~ 157 (207)
...||+|.+..++... .....+ .......++++|+++.+.
T Consensus 194 ~~~ydlIlsSetiy~~-------~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSI-------DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhCc-------chhhhhHhhhhhhcCCccchhhhhh
Confidence 1278999988887765 444444 556667788999988754
No 267
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.25 E-value=0.0084 Score=45.46 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc-CCCCeeEEEeCcchh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF-QTGSFDSVVDKGTLD 124 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~-~~~~fD~v~~~~~l~ 124 (207)
.+++||-+|=..-.-........+++|+.+|+++..++..++...+. -+++....|+.+..|- -.++||+++...+..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 34599999865532222222233569999999999999998876532 3589999999996432 258999999886544
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCc-EEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKG-VYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG-~~~~ 155 (207)
+ +....++.+....|+..| ..++
T Consensus 124 -~-------~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 124 -P-------EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp -H-------HHHHHHHHHHHHTB-STT-EEEE
T ss_pred -H-------HHHHHHHHHHHHHhCCCCceEEE
Confidence 3 788999999999998866 4444
No 268
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.20 E-value=0.0022 Score=49.02 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=69.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------CC-CCceEEEecccccc--ccCCCC-eeEE
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NR-PQLKYIKMDVRQMD--EFQTGS-FDSV 117 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-------~~-~~~~~~~~d~~~~~--~~~~~~-fD~v 117 (207)
..|||+|+|+|.-+..++.....+|...|.... +...+.+.. .. ..+.+...+..+.. .+.... +|+|
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 479999999998888777754448888886543 333322211 10 24555555554431 122334 9999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++..++... .....++..++..|..+|+.++.+.-.+
T Consensus 167 lasDvvy~~-------~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 167 LASDVVYEE-------ESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEeeeeecC-------CcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 999888865 6778888889999999997777664444
No 269
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.20 E-value=0.0015 Score=52.57 Aligned_cols=113 Identities=17% Similarity=0.056 Sum_probs=63.7
Q ss_pred CcEEEEcCCCchhhHHHHhc------------C----C-CcEEEEeCCH-HHHHH------HHHHccCCCCc--eEEEec
Q 028547 49 QRILIVGCGNSAFSEGMVDD------------G----Y-EDVVNVDISS-VVIEA------MMKKYSNRPQL--KYIKMD 102 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~------------~----~-~~v~~~D~s~-~~i~~------~~~~~~~~~~~--~~~~~d 102 (207)
-+|+|+||.+|..+..+... + + -+|+--|.-. +.-.. ..+......++ .-+.+.
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpgS 97 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPGS 97 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES-
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCch
Confidence 49999999999888766552 1 0 1666667533 21111 11111111222 223355
Q ss_pred cccccccCCCCeeEEEeCcchhhhccCC---CC-----------------------------hhhHHHHHHHHHHhcCCC
Q 028547 103 VRQMDEFQTGSFDSVVDKGTLDSLLCGS---NS-----------------------------RQNATQMLKEVWRVLKDK 150 (207)
Q Consensus 103 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~---~~-----------------------------~~~~~~~l~~~~~~L~pg 150 (207)
+.+-. +|.++.|++++...+||+...+ .+ ..|...+|+.-++-|+||
T Consensus 98 Fy~rL-fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G 176 (334)
T PF03492_consen 98 FYGRL-FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG 176 (334)
T ss_dssp TTS---S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhcc-CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 55543 7999999999999999986322 11 136777888889999999
Q ss_pred cEEEEEEeCCcc
Q 028547 151 GVYILVTYGAPI 162 (207)
Q Consensus 151 G~~~~~~~~~~~ 162 (207)
|.+++...+.+.
T Consensus 177 G~mvl~~~gr~~ 188 (334)
T PF03492_consen 177 GRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEE-ST
T ss_pred cEEEEEEeeccc
Confidence 999998876655
No 270
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.00013 Score=51.10 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=45.9
Q ss_pred ccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 102 DVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 102 d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++....+|.+++.|+|++.+++.|+ ..+.-..+++.+++.|||||.+-++....
T Consensus 36 ~As~e~~F~dns~d~iyaeHvlEHl-----t~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 36 RASNESMFEDNSVDAIYAEHVLEHL-----TYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhhhhccCCCcchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 4444447899999999999999999 66788899999999999999999987433
No 271
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.0011 Score=49.52 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=70.8
Q ss_pred CcEEEEcCCCchhhHHHHhcCC----------CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-------ccCC
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY----------EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQT 111 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~----------~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~ 111 (207)
++|+|+.+..|.+++.+.+.-+ ..+++||+.+ ....+.+..+++|+.+.. -|..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---------MaPI~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---------MAPIEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc---------CCccCceEEeecccCCHhHHHHHHHHhCC
Confidence 5999999999999999988521 1399999866 223357788889998852 2456
Q ss_pred CCeeEEEeCcchhhhccCCCCh----hhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSR----QNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++.|+|+|.+..+--.-+.-++ .-+...|.-...+|+|||.|+.-.|.+.
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 7899999987765321111111 1234445555689999999998655444
No 272
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0048 Score=49.46 Aligned_cols=138 Identities=13% Similarity=0.068 Sum_probs=83.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC---C--cEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccc--------ccCCC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY---E--DVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMD--------EFQTG 112 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~---~--~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~--------~~~~~ 112 (207)
+.+|||+++..|.=+..+.+..+ . .+++=|.++.-+.......... +++.+...|+.... +....
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~ 235 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQL 235 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhh
Confidence 34999999999988877777543 1 6888899987666665544322 34444444444331 12345
Q ss_pred CeeEEEeCcchhhhccCC----------------CChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccc-----cc---
Q 028547 113 SFDSVVDKGTLDSLLCGS----------------NSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG-----ML--- 168 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~----------------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-----~~--- 168 (207)
.||.|++.-+..+=+... +=..-...++.+-.+.||+||.++.+|++-...+.. .+
T Consensus 236 ~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~ 315 (375)
T KOG2198|consen 236 KFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKV 315 (375)
T ss_pred hcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHh
Confidence 799999864332211000 011245678888899999999999999755433222 22
Q ss_pred cCCCCceEEEEEEeeee
Q 028547 169 RDSCSWNIKLHVIEKLV 185 (207)
Q Consensus 169 ~~~~~~~~~~~~~~~~~ 185 (207)
...+.|-...+..+...
T Consensus 316 ~~~~~lv~~~~~lp~l~ 332 (375)
T KOG2198|consen 316 GGAVELVDVSGDLPGLK 332 (375)
T ss_pred cCcccceeeccccccce
Confidence 44455555444444444
No 273
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.01 E-value=0.0053 Score=50.06 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=41.3
Q ss_pred cCCCCeeEEEeCcchhhhccCCCC-------------------------------hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNS-------------------------------RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~-------------------------------~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|.++.+++++...+||++-.+.. ..|...+|+.-++-|.|||.+++..
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 789999999999999998622210 1256777777889999999999988
Q ss_pred eCCc
Q 028547 158 YGAP 161 (207)
Q Consensus 158 ~~~~ 161 (207)
.+.+
T Consensus 238 ~Gr~ 241 (386)
T PLN02668 238 LGRT 241 (386)
T ss_pred ecCC
Confidence 7654
No 274
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0051 Score=49.01 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccc-ccc-CCCCeeEEEeCc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQM-DEF-QTGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~-~~~-~~~~fD~v~~~~ 121 (207)
+++|||+|.|.|.-+..+-...+ ..++.++.|+..-+.......+. ........|+..- .++ ..+.|++++.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~-- 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV-- 191 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh--
Confidence 35899999999876554444332 47788888885433332221110 0111111222211 112 2456777774
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
++.+ .....+..+...++.+..+++|||.++++..+.+-
T Consensus 192 -~~eL-l~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 192 -LDEL-LPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred -hhhh-ccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 4443 22234456667999999999999999999876663
No 275
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.96 E-value=0.011 Score=50.03 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=79.4
Q ss_pred ecCccCHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcC-----CCcEEEEeCCHHHHHHHHHHcc--CCC-CceEEE
Q 028547 30 YQKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKYS--NRP-QLKYIK 100 (207)
Q Consensus 30 ~~~~~~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~~D~s~~~i~~~~~~~~--~~~-~~~~~~ 100 (207)
+...+.+..++...+. +...+|+|..||+|.+.....+.- ...++|.|+++.....++.+.. +.. ++....
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~ 247 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH 247 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence 3344445555444443 333499999999998877665531 1369999999999999888754 211 233444
Q ss_pred ecccccccc----CCCCeeEEEeCcchhhhccC------------------CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 101 MDVRQMDEF----QTGSFDSVVDKGTLDSLLCG------------------SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 101 ~d~~~~~~~----~~~~fD~v~~~~~l~~~~~~------------------~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|-..-... ..+.||+|+++.++...... .........+++.+...|+|+|..-++.
T Consensus 248 ~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 248 GDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred cccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 433332112 34679999999888511111 1122234789999999999988555444
No 276
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.95 E-value=0.0022 Score=52.39 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=72.5
Q ss_pred CcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC---C-CceEEEeccccccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR---P-QLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~---~-~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.+|||.=+|+|.=++..+.. +..+|+.-|+++++++..++++.-+ . .+.+.+.|+..+.......||+|=.
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl--- 127 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL--- 127 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE---
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe---
Confidence 38999999999888777776 3369999999999999999987622 2 4778888998873336789999984
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.+ -.+..+++.+.+.++.||.+.++.
T Consensus 128 -DPf-------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 -DPF-------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ---S-------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCC-------CCccHhHHHHHHHhhcCCEEEEec
Confidence 333 445788999999999999999864
No 277
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.91 E-value=0.0059 Score=46.16 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc--CCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~v~~~~ 121 (207)
++..+||-+|+++|..-.+.... +. ..|+++|.|+..=.....-..+.+|+.-+.-|+.....+ .-.-.|+||+.-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv 234 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV 234 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence 44459999999999877777664 33 489999999865444333333336888888898876322 233678887641
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...+....+.-++...|++||.|++..
T Consensus 235 ---------aqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 235 ---------AQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ---------CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 123556666778889999999999865
No 278
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.90 E-value=0.0064 Score=48.08 Aligned_cols=86 Identities=12% Similarity=0.218 Sum_probs=61.5
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccc----c
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMD----E 108 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~----~ 108 (207)
.+.+.++.+.++++..++|.-.|.|..+..+++.. ...++|+|-++.+++.+++++... .++.+++.++.++. .
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 35667777766666699999999999999999863 269999999999999999988744 68999999988862 1
Q ss_pred c-CCCCeeEEEeC
Q 028547 109 F-QTGSFDSVVDK 120 (207)
Q Consensus 109 ~-~~~~fD~v~~~ 120 (207)
. ...++|.|+..
T Consensus 88 ~~~~~~~dgiL~D 100 (310)
T PF01795_consen 88 LNGINKVDGILFD 100 (310)
T ss_dssp TTTTS-EEEEEEE
T ss_pred ccCCCccCEEEEc
Confidence 2 33578888865
No 279
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.87 E-value=0.0015 Score=46.15 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=69.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHH-HHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM-MKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
++++-+|+..-..-....+.|.+++..+|.++--++.- +.+. ..+...|+..-.....++||++.+...++|..
T Consensus 3 ~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-----ssi~p~df~~~~~~y~~~fD~~as~~siEh~G 77 (177)
T PF03269_consen 3 KSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-----SSILPVDFAKNWQKYAGSFDFAASFSSIEHFG 77 (177)
T ss_pred ceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-----ccccHHHHHHHHHHhhccchhhheechhcccc
Confidence 36788888766666666677777899999876322211 1111 12333344432222457899999999998876
Q ss_pred cCC----CChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGS----NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~----~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
-+. -++......+.++.++|||||.+++....+.
T Consensus 78 LGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 78 LGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 432 2233556677888999999999999875443
No 280
>PHA01634 hypothetical protein
Probab=96.85 E-value=0.0078 Score=40.93 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=40.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
.++|+|+|++-|.-++.++-.|.+.|+++++++...+..+++...
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 349999999999999999999999999999999999999887653
No 281
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.81 E-value=0.0059 Score=44.69 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHH----------HHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVI----------EAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i----------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
+++.+|+|+=.|.|.++.-++.. +. ..|+++-..+... ..+++. ...|...+-.+...+ . +.+.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A~-~-~pq~ 122 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVAL-G-APQK 122 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCccccc-C-CCCc
Confidence 34459999999999999988875 22 3677664433211 111111 113555555555555 2 5566
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.|+++.....|-+....-...........+++.|||||++.+.+.
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 777776555544432222346788899999999999999999874
No 282
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.77 E-value=0.00046 Score=45.60 Aligned_cols=44 Identities=11% Similarity=0.291 Sum_probs=34.1
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.||+|+|..+.-|+ .-+.+.+.+..+++++++.|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWI-HLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWI-HLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEE-EecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999998888776 223345678999999999999999999854
No 283
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.76 E-value=0.017 Score=46.27 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=66.3
Q ss_pred CCCcEEEEcCC-CchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-cccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCG-NSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-VRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G-~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~fD~v~~~~~l 123 (207)
++.+|+-.|+| .|.++..+++ .+ .+|+++|.+++-.+.+++.-.. .++... ...... -.+.||+|+..-.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----~~i~~~~~~~~~~-~~~~~d~ii~tv~- 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----HVINSSDSDALEA-VKEIADAIIDTVG- 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----EEEEcCCchhhHH-hHhhCcEEEECCC-
Confidence 33488888886 4688888888 56 5999999999999999886433 344432 111111 1234999997532
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
...+....+.|+++|.++++....
T Consensus 239 -------------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 -------------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -------------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 456778899999999999988653
No 284
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.70 E-value=0.0033 Score=51.48 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=46.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM 106 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~ 106 (207)
.|||||.|+|.++...+..|...+++++.-..|.+.|++...+. .++.++.-...+.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 78999999999999999998779999999999999998876543 4566666555554
No 285
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.55 E-value=0.016 Score=46.96 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=66.9
Q ss_pred cEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccc-ccccc-CCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVR-QMDEF-QTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~-~~~~~-~~~~fD~v~~~~~l~ 124 (207)
+|+-+|||+ |.++..+++. |.++|+.+|.++.-++.|++..... .+..... +.. ..... ....+|+++-..-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-VVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-EeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 899999998 8887777665 5579999999999999999865421 0000001 111 11111 2247999996422
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
....+..+.+.++|+|.+.+.......
T Consensus 248 -----------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -----------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -----------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 245788999999999999988765443
No 286
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.55 E-value=0.0092 Score=47.60 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=57.0
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--cCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~ 127 (207)
+++|+-||.|.+..-+.+.|+..+.++|+++.+.+..+.++. .....|+.+... ++. .+|+++...+...++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccCCceEe
Confidence 689999999999999999998789999999999999999884 788889998742 343 599999988877764
No 287
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.019 Score=46.19 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=78.4
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCee
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD 115 (207)
.+..+.+..+.+|+|.=+|+|.=++.++.... .+++.-|+++++++.+++|+.-+ .+...++.|+..+.-.....||
T Consensus 44 ~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd 123 (380)
T COG1867 44 VLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFD 123 (380)
T ss_pred HHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCcc
Confidence 33344333255999999999988888877754 38999999999999999998743 4666777788876322347889
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
+|=. +.+ -.+..+++.+.+.++.+|++-++
T Consensus 124 ~IDi----DPF-------GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 124 VIDI----DPF-------GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred EEec----CCC-------CCCchHHHHHHHHhhcCCEEEEE
Confidence 8863 322 34466788888888999998874
No 288
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.50 E-value=0.0025 Score=41.91 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCH
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISS 80 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~ 80 (207)
..+|+|||+|.+.--+...|+ .-.|+|.-.
T Consensus 61 ~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred ceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 899999999999999999998 888988644
No 289
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.011 Score=47.52 Aligned_cols=114 Identities=13% Similarity=0.161 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC---------CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~---------~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
+.+..++|+|.|.|.++..++... ..++..+|+|++..+.-++++.... -.+......+. .+..-.-+
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~-~~~~~~~~~e~--~p~~~~~i 152 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE-DLIRWVEWVED--LPKKFPGI 152 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc-cchhHHHHHHh--ccccCceE
Confidence 334489999999999998887641 3589999999998888777776432 11112222221 22222345
Q ss_pred EEeCcchhhhccCC------------------------------------CC-------------hhhHHHHHHHHHHhc
Q 028547 117 VVDKGTLDSLLCGS------------------------------------NS-------------RQNATQMLKEVWRVL 147 (207)
Q Consensus 117 v~~~~~l~~~~~~~------------------------------------~~-------------~~~~~~~l~~~~~~L 147 (207)
|++|..++++.+.. +. ......+++.++..|
T Consensus 153 ~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~~~~~~~~~~~ll~l~~~~~~~g~~~E~~~a~~~~l~~ia~~L 232 (370)
T COG1565 153 VVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFSHAINELIDEALLPLDAPEAEDGYILEVSPAREALLKAIAERL 232 (370)
T ss_pred EEechhhccccceeEeccCceEEEEeeccCcccceeeccccccchhhhccCcccccccCCceeeeCHHHHHHHHHHHHHH
Confidence 55555555443221 00 013557888888888
Q ss_pred CCCcEEEEEEeCCccc
Q 028547 148 KDKGVYILVTYGAPIY 163 (207)
Q Consensus 148 ~pgG~~~~~~~~~~~~ 163 (207)
+. |++++.+|+.+..
T Consensus 233 ~~-G~~l~iDYG~~~~ 247 (370)
T COG1565 233 ER-GVFLFIDYGYPAE 247 (370)
T ss_pred hh-CeEEEEecCCccc
Confidence 88 8888888877533
No 290
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.47 E-value=0.019 Score=42.69 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCchhhHHHHhc-----CCCcEEEEeCCHHHHHH-HHHHccCCCCceEEEecccccccc-------CCCCe
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-----GYEDVVNVDISSVVIEA-MMKKYSNRPQLKYIKMDVRQMDEF-------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-----~~~~v~~~D~s~~~i~~-~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~f 114 (207)
+..|+|+|.-.|.-+.+++.. +.++|+|+|++-..... +.+..+-.++++++++|..+.... .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 349999999988766666542 23599999995433221 111111226899999998875211 12234
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+|+... +| ..+.....|+....++++|+.+++.+
T Consensus 113 vlVilDs--~H------~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDS--SH------THEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECC--Cc------cHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 4666432 11 12556778888999999999998854
No 291
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.44 E-value=0.023 Score=44.94 Aligned_cols=105 Identities=17% Similarity=0.298 Sum_probs=70.2
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-----eccccc--cccCCCCeeEEEe
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-----MDVRQM--DEFQTGSFDSVVD 119 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-----~d~~~~--~~~~~~~fD~v~~ 119 (207)
.+||-+|+|+ |.++...++. |.++|..+|+++..++.|++ +... .+.... .++.+. ..+....+|+.+.
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~-~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT-VTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe-EEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 4999999998 6666666664 56799999999999999998 4321 111111 111111 1123345898886
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
.. .....++.....++.+|.++++.++.+....+++
T Consensus 249 Cs-------------G~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~ 284 (354)
T KOG0024|consen 249 CS-------------GAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPII 284 (354)
T ss_pred cc-------------CchHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence 53 3345677778999999998888887776655544
No 292
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.40 E-value=0.014 Score=46.57 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=57.5
Q ss_pred EEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 51 ILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 51 vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
|+|+-||.|.++.-+.+.|+.-+.++|+++.+.+..+.+++. .+...|+.+..+.....+|+++...+...++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN----KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC----CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 689999999999999888885677899999999999988754 4456788876422234689999987777664
No 293
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.39 E-value=0.011 Score=44.38 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
+..+++....++. .|||.-||+|..+....+.+- +.+|+|+++...+.|++
T Consensus 181 ~~~lI~~~t~~gd-iVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 181 IERLIKASTNPGD-IVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHS-TT--EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHhhhccce-eeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4455555555555 999999999999988888865 89999999999988864
No 294
>PRK11524 putative methyltransferase; Provisional
Probab=96.38 E-value=0.014 Score=45.89 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=42.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~ 91 (207)
.++...-.+.. .|||.-||+|..+....+.+- +++|+|++++.++.+++++.
T Consensus 200 rlI~~~S~~GD-~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 200 RIILASSNPGD-IVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHhCCCCC-EEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 34444434444 999999999999988888765 99999999999999999975
No 295
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.15 E-value=0.073 Score=45.27 Aligned_cols=99 Identities=16% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-----------cc------
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----------MD------ 107 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-----------~~------ 107 (207)
.+.+|+-+|||. |..+...++. |. .|+++|.+++.++.+++. . .++...|..+ ..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl-G----A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM-G----AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-C----CeEEEeccccccccccchhhhcchhHHHH
Confidence 345999999997 6677666665 55 899999999999988773 2 2332222211 00
Q ss_pred ---ccC--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 108 ---EFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 108 ---~~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+. ...+|+|+....... ...+..+.+++.+.+||||+++.+..
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 001 146899997532211 12233335999999999999887765
No 296
>PRK13699 putative methylase; Provisional
Probab=96.08 E-value=0.028 Score=42.75 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
.+++.+..+.. .|||.-||+|..+....+.+- +++|+|+++...+.+.+++..
T Consensus 155 ~~i~~~s~~g~-~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 155 PLIESFTHPNA-IVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHhCCCCC-EEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 34444444444 999999999999988888766 999999999999999888653
No 297
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.06 E-value=0.016 Score=51.16 Aligned_cols=103 Identities=10% Similarity=0.038 Sum_probs=65.5
Q ss_pred CcEEEEcCCCchhhHHHHhc-------C----C--CcEEEEeCCH---HHHHHHHHHcc------------------CC-
Q 028547 49 QRILIVGCGNSAFSEGMVDD-------G----Y--EDVVNVDISS---VVIEAMMKKYS------------------NR- 93 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~-------~----~--~~v~~~D~s~---~~i~~~~~~~~------------------~~- 93 (207)
-+|+|+|.|+|.......+. . . -+++++|..+ +.+..+.+.++ ..
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 39999999999765544321 1 1 2788999643 32322221110 00
Q ss_pred --------CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 94 --------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 94 --------~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
-.+.+..+|+.+..+.....+|+++ ++.+....+++--...+++.++++++|||.+.-
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~----lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWF----LDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEE----eCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1344666787765332235699999 555555556667789999999999999999874
No 298
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.97 E-value=0.063 Score=43.26 Aligned_cols=93 Identities=19% Similarity=0.344 Sum_probs=58.5
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---eccccccccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+||-.|||. |.++..+++. |..+++++|.+++.++.+++. ... .++. .++.+.. ...+.+|+|+..-
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~---~vi~~~~~~~~~~~-~~~g~~D~vid~~- 243 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD---KLVNPQNDDLDHYK-AEKGYFDVSFEVS- 243 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc---EEecCCcccHHHHh-ccCCCCCEEEECC-
Confidence 34888888864 6677777665 444799999999988888763 211 1111 1222221 1123589888531
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++...+.|+++|.++....
T Consensus 244 ------------G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 ------------GHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ------------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 112356778889999999988764
No 299
>PRK11524 putative methyltransferase; Provisional
Probab=95.77 E-value=0.024 Score=44.62 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=44.2
Q ss_pred CCceEEEeccccc-cccCCCCeeEEEeCcchhhhc-c-C-CC--Ch----hhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 94 PQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLL-C-G-SN--SR----QNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 94 ~~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~-~-~-~~--~~----~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+.+++++|..+. ..+++++||+|+++.++.--. . . .. .. ......+..+.++|+|||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3567889999985 335778999999988764210 0 0 00 00 224578899999999999998853
No 300
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.69 E-value=0.0099 Score=48.53 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=52.8
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccc
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQM 106 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~ 106 (207)
+.+..+.+.+. .|.|+-||-|-++.-+++.++ .|++-|.++++++..+.+++-+ .++....+|+..+
T Consensus 241 erlsg~fk~ge-vv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 241 ERLSGLFKPGE-VVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred HHHhhccCCcc-hhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 33444434444 999999999999999999986 9999999999999999988732 3477777777664
No 301
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.66 E-value=0.05 Score=42.02 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=34.1
Q ss_pred CcEEEEcCCCchhhHHHHhcC---------CCcEEEEeCCHHHHHHHHHHccC
Q 028547 49 QRILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~---------~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
-+|+|+|+|+|.++..++..- ..+++.+|+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 499999999999998887731 13899999999888888877764
No 302
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.63 E-value=0.0052 Score=47.88 Aligned_cols=90 Identities=19% Similarity=0.118 Sum_probs=64.3
Q ss_pred CcEEEEcCCCchhhH-HHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~-~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
..|+|+=+|-|+++. ++...|.+.|+++|.++.+++..++++... .+.....+|-+.. .+....|.|.......
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~--~~~~~AdrVnLGLlPS 273 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP--KPRLRADRVNLGLLPS 273 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc--Cccccchheeeccccc
Confidence 389999999999999 888888889999999999999999887643 2344455555554 3567788888543222
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG 151 (207)
++..+. .+.++|+|.|
T Consensus 274 -------se~~W~----~A~k~Lk~eg 289 (351)
T KOG1227|consen 274 -------SEQGWP----TAIKALKPEG 289 (351)
T ss_pred -------cccchH----HHHHHhhhcC
Confidence 223333 3467777743
No 303
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.61 E-value=0.17 Score=42.64 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=58.6
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc----------------CCCC
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----------------QTGS 113 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~----------------~~~~ 113 (207)
+++|+-||.|.+..-+...|+..+.++|+++.+.+.-+.++...+....+..|+.+.... ....
T Consensus 90 ~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p~ 169 (467)
T PRK10458 90 RFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIPD 169 (467)
T ss_pred eEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCCC
Confidence 999999999999999888888778899999999999888874333345555666665210 1125
Q ss_pred eeEEEeCcchhhhc
Q 028547 114 FDSVVDKGTLDSLL 127 (207)
Q Consensus 114 fD~v~~~~~l~~~~ 127 (207)
.|+++...+...++
T Consensus 170 ~DvL~gGpPCQ~FS 183 (467)
T PRK10458 170 HDVLLAGFPCQPFS 183 (467)
T ss_pred CCEEEEcCCCCccc
Confidence 79999887777664
No 304
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=95.51 E-value=0.16 Score=34.67 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=52.8
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
... +|+|+|-|. -..+..+.+.|+ .|+++|+.+. +.+ ..+.++..|+.+....--...|+|.+..+-
T Consensus 13 ~~~-kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRPP- 80 (127)
T PF03686_consen 13 NYG-KIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRPP- 80 (127)
T ss_dssp -SS-EEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-------------STTEE---SSS--HHHHTTEEEEEEES---
T ss_pred CCC-cEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc--cCcceeeecccCCCHHHhcCCcEEEEeCCC-
Confidence 344 999999987 356667777787 9999999986 111 368899999999742123478999975432
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
.+....+.++++.+. .-+++..++.+.
T Consensus 81 ---------~El~~~il~lA~~v~--adlii~pL~~e~ 107 (127)
T PF03686_consen 81 ---------PELQPPILELAKKVG--ADLIIRPLGGES 107 (127)
T ss_dssp ---------TTSHHHHHHHHHHHT---EEEEE-BTTB-
T ss_pred ---------hHHhHHHHHHHHHhC--CCEEEECCCCCC
Confidence 344555666665544 567777776654
No 305
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.18 Score=40.56 Aligned_cols=75 Identities=15% Similarity=0.268 Sum_probs=60.6
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC--CCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~fD~v~~~~~l~~~~ 127 (207)
+++|+-||.|.+..-+...|+.-+.++|+++.+++.-+.+++. ..+...|+.+..... ...+|+++...+.+.++
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---GDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---CceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 8999999999999888888887888999999999999988753 466777777653222 11789999998887775
No 306
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.17 E-value=0.65 Score=36.10 Aligned_cols=117 Identities=12% Similarity=0.090 Sum_probs=72.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHH-HHHHHHHHccC-----CCCceEEEecccccc--
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSV-VIEAMMKKYSN-----RPQLKYIKMDVRQMD-- 107 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~-~i~~~~~~~~~-----~~~~~~~~~d~~~~~-- 107 (207)
+.+.+...+......|+.+|||-=.-...+... . .+..+|++.. .++.-++.+.. ..+.+++..|+.+.+
T Consensus 70 ~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~ 147 (260)
T TIGR00027 70 FDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPA 147 (260)
T ss_pred HHHHHHHHHhcCCcEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHH
Confidence 334444554444458999999874444444322 2 3455555444 44444444432 257888888886321
Q ss_pred -----ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 108 -----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 108 -----~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.+....--++++-+++.++ +.+....+++.+.+...||+.+++....
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL-----~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYL-----TEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcC-----CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 1112234478888888888 7788999999999998898888876543
No 307
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=0.065 Score=45.18 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=73.1
Q ss_pred cEEEEcCCCchhhHHHHh------cCCCcEEEEeCCHHHHHHHHHHcc-CC-CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 50 RILIVGCGNSAFSEGMVD------DGYEDVVNVDISSVVIEAMMKKYS-NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~------~~~~~v~~~D~s~~~i~~~~~~~~-~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+|.-+|+|-|-+.....+ +.. +++++|.+|.++...+.+-- .. .+++++..|++.+. -+.++.|++++-
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~-ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWN-APREQADIIVSE- 446 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccC-CchhhccchHHH-
Confidence 778899999966543333 223 89999999999988877422 22 57899999999984 235789998864
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+..++ +.+--+..|..+.+.|||+|+.+=..
T Consensus 447 LLGSFG----DNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 447 LLGSFG----DNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhcccc----CccCCHHHHHHHHhhcCCCceEccch
Confidence 344331 23455778899999999999987643
No 308
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.96 E-value=0.082 Score=39.95 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=49.3
Q ss_pred cEEEEcCCCchhhHHHHh--cCCCcEEEEeCCHHHHHHHHHHccCCC----CceEEEe-ccccc---cccCCCCeeEEEe
Q 028547 50 RILIVGCGNSAFSEGMVD--DGYEDVVNVDISSVVIEAMMKKYSNRP----QLKYIKM-DVRQM---DEFQTGSFDSVVD 119 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~--~~~~~v~~~D~s~~~i~~~~~~~~~~~----~~~~~~~-d~~~~---~~~~~~~fD~v~~ 119 (207)
++||||.|.-..-..+.. .|+ .++|.|+++..++.|+.....++ .++.... |-... .--.++.||+++|
T Consensus 81 ~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlC 159 (292)
T COG3129 81 RILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLC 159 (292)
T ss_pred EEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEec
Confidence 889998876544333333 356 99999999999999998766432 2343332 11111 0012678999999
Q ss_pred Ccchhh
Q 028547 120 KGTLDS 125 (207)
Q Consensus 120 ~~~l~~ 125 (207)
+.++|.
T Consensus 160 NPPFh~ 165 (292)
T COG3129 160 NPPFHD 165 (292)
T ss_pred CCCcch
Confidence 999875
No 309
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.85 E-value=0.096 Score=41.38 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=70.3
Q ss_pred CcEEEEcCCCchhhHHHHhcC-------C--------------CcEEEEeCCHH--HHHHHHHHccCC------------
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-------Y--------------EDVVNVDISSV--VIEAMMKKYSNR------------ 93 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-------~--------------~~v~~~D~s~~--~i~~~~~~~~~~------------ 93 (207)
.+||-||.|.|.-...++... . -.++.+|+.+- .+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 499999999985554443321 0 17999998763 444443332211
Q ss_pred -------CCceEEEecccccccc------CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 94 -------PQLKYIKMDVRQMDEF------QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 94 -------~~~~~~~~d~~~~~~~------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
-++.|.+.|+..+..- .....++|-...++.-+++. +.....++|.++-..++||..+++++..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~--s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST--SISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc--ChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 2578999999987320 11235666655555544222 2567889999999999999999998743
No 310
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.73 E-value=0.023 Score=47.35 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=73.0
Q ss_pred CcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccc---ccCCCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD---EFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~---~~~~~~fD~v~~~ 120 (207)
.+|||.=|++|.-++..++.- ..++++-|.+++++...+++..-. ..+.-...|+.... +.....||+|=.
T Consensus 111 l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL- 189 (525)
T KOG1253|consen 111 LRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL- 189 (525)
T ss_pred chHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec-
Confidence 399999999998888887763 369999999999999999887633 23455556666641 223478999983
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
+.. -....+|+.+.+.++.||++.+.
T Consensus 190 ---DPy-------Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 190 ---DPY-------GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ---CCC-------CCccHHHHHHHHHhhcCCEEEEE
Confidence 333 34467888889999999999885
No 311
>PRK13699 putative methylase; Provisional
Probab=94.66 E-value=0.076 Score=40.37 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=42.1
Q ss_pred ceEEEeccccc-cccCCCCeeEEEeCcchhh-hcc--C-----CCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 96 LKYIKMDVRQM-DEFQTGSFDSVVDKGTLDS-LLC--G-----SNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 96 ~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~-~~~--~-----~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.+++++|..+. ..++++++|+|+...++.- ... + ....+.....+.+++++|||||.+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 35778888774 3468899999999977741 000 0 011134568889999999999988763
No 312
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.41 E-value=0.64 Score=33.36 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=65.5
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC---CCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ---TGS 113 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~ 113 (207)
...+........ +|+-|||=+-.....-......+++.+|++...-. +. .+ .|..-|..+...++ .++
T Consensus 16 ~~~l~~~~~~~~-~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~-----~~--~~-~F~fyD~~~p~~~~~~l~~~ 86 (162)
T PF10237_consen 16 ARELLDGALDDT-RIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ-----FG--GD-EFVFYDYNEPEELPEELKGK 86 (162)
T ss_pred HHHHHHhcCCCC-EEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh-----cC--Cc-ceEECCCCChhhhhhhcCCC
Confidence 333333333344 99999987744333221111248999999885322 11 12 56777777653222 579
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||+|++..++- .++-.....+.+..++++++.+++.+
T Consensus 87 ~d~vv~DPPFl-------~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 87 FDVVVIDPPFL-------SEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred ceEEEECCCCC-------CHHHHHHHHHHHHHHhCccceEEEec
Confidence 99999998873 34566677777777778888888777
No 313
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.25 E-value=0.94 Score=30.37 Aligned_cols=90 Identities=13% Similarity=0.219 Sum_probs=59.2
Q ss_pred cEEEEcCCCc-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 50 RILIVGCGNS-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 50 ~vLdiG~G~G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
+|+|+|-|-= ..+..+++.|+ .++++|+.+. +.+ ..+++...|+.+..----...|+|.+--
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR------- 78 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP--EGLRFVVDDITNPNISIYEGADLIYSIR------- 78 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc--ccceEEEccCCCccHHHhhCccceeecC-------
Confidence 9999998863 55667788887 9999999885 222 4789999999997311234678888632
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+..+....+-.+++.++ ..+++....+.
T Consensus 79 ---pppEl~~~ildva~aVg--a~l~I~pL~Ge 106 (129)
T COG1255 79 ---PPPELQSAILDVAKAVG--APLYIKPLTGE 106 (129)
T ss_pred ---CCHHHHHHHHHHHHhhC--CCEEEEecCCC
Confidence 22444555555555443 45666554443
No 314
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.09 E-value=0.22 Score=40.90 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCceEEEecccccc-ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 94 PQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 94 ~~~~~~~~d~~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
.++++...++.+.. ..+.+++|.++....++|+ +.......++++.+.++|||.+++-+...+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-----~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-----DPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-----CHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 57899999999863 2468999999999999998 6789999999999999999999998865543
No 315
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.90 E-value=0.043 Score=37.54 Aligned_cols=68 Identities=24% Similarity=0.212 Sum_probs=43.5
Q ss_pred CceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 95 QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 95 ~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
.+.+..+|+.+..+.-...||+|+ ++.++...+++--...+++.++++++|||.+. +|+......+-+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~y----lDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~--Tys~a~~Vr~~L 99 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWY----LDGFSPAKNPELWSEELFKKLARLSKPGGTLA--TYSSAGAVRRAL 99 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEE----E-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE--ES--BHHHHHHH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEE----ecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE--EeechHHHHHHH
Confidence 467778888775333347899999 55554555666677899999999999999776 555544444433
No 316
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.75 E-value=0.4 Score=39.33 Aligned_cols=108 Identities=15% Similarity=0.249 Sum_probs=63.3
Q ss_pred CcEEEEcCCC-chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEec-ccc-cccc-CCCCeeEEEeCcch
Q 028547 49 QRILIVGCGN-SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-VRQ-MDEF-QTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-~~~-~~~~-~~~~fD~v~~~~~l 123 (207)
.+||..|||. |..+..+++... ..+++++.+++..+.+++.... ..+.....+ +.+ .... ....+|+|+..-.-
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~ 264 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-ETINFEEVDDVVEALRELTGGRGPDVCIDAVGM 264 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EEEcCCcchHHHHHHHHHcCCCCCCEEEECCCC
Confidence 4899999987 888888877643 3699999999988888875321 111111111 111 1111 23468998864210
Q ss_pred h-------hhccC-CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 D-------SLLCG-SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~-------~~~~~-~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. .+.-+ ..+..+....++.+.+.|+++|.++...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 265 EAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 0 00000 0011223557888899999999998765
No 317
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.75 E-value=0.68 Score=36.72 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=54.3
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+||-+|||. |.++..+++. |...+.++|.+++.++.+... .+ .|..+. ....+|+|+..-
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~-------~~--i~~~~~---~~~g~Dvvid~~----- 208 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY-------EV--LDPEKD---PRRDYRAIYDAS----- 208 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc-------cc--cChhhc---cCCCCCEEEECC-----
Confidence 4888889875 7777777765 554577888888766655432 11 111111 234689888541
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.-...++.+.+.|+++|.+++...
T Consensus 209 --------G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 209 --------GDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --------CCHHHHHHHHHhhhcCcEEEEEee
Confidence 113456778899999999987664
No 318
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.68 E-value=0.08 Score=42.32 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHH-------HHHccC---C-CCceEEEeccccccccCCCCee
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM-------MKKYSN---R-PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~-------~~~~~~---~-~~~~~~~~d~~~~~~~~~~~fD 115 (207)
++..|+|.--|||.++...+..|. -|+|.||+-.++... +.+++. . .-+.++.+|..+..-..+..||
T Consensus 208 pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 344999999999999999999887 999999998887732 223321 1 2467788888886213567899
Q ss_pred EEEeCcchhhhccCC--------C--------------C----hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGS--------N--------------S----RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~--------~--------------~----~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+|..++.--.... . . ..-...++.-.++.|..||.+++..
T Consensus 287 aIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 287 AIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred EEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 999987663110000 0 0 0124456666789999999988743
No 319
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.53 E-value=1.4 Score=34.98 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=57.3
Q ss_pred CcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-----cccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-----DEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~fD~v~~~~~ 122 (207)
.+||..|+|. |..+..+++....++++++.+++..+.+++. . +..+..+-... .......+|+|+...
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~-g----~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~- 240 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL-G----ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV- 240 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh-C----CCEEEcCCCcCHHHHHHHhcCCCceEEEECC-
Confidence 3888888763 7777777775333799999999888877553 1 11111111100 012345789888531
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++.+.+.|+++|.++....
T Consensus 241 ------------g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 ------------GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------------CCHHHHHHHHHHhhcCCEEEEECC
Confidence 113467788999999999987653
No 320
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.44 E-value=0.36 Score=38.28 Aligned_cols=99 Identities=11% Similarity=0.158 Sum_probs=70.4
Q ss_pred cEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 50 ~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
+|.-+|.|. |..+..++-...++|+.+|.+.+-++.....+.. ++.++..+..++. ..-...|+++..=.+.
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~--rv~~~~st~~~ie-e~v~~aDlvIgaVLIp---- 242 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG--RVHTLYSTPSNIE-EAVKKADLVIGAVLIP---- 242 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc--eeEEEEcCHHHHH-HHhhhccEEEEEEEec----
Confidence 788888886 7777777665445999999999888877766543 4566666655552 2345789988642222
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.+.+....+++.+.++||++++=+..
T Consensus 243 ---gakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 243 ---GAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred ---CCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 346778888999999999998875543
No 321
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.91 Score=34.90 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=68.3
Q ss_pred CcEEEEcCCCchhh----HHHHhcCC-CcEEEEeCCHHHHHHHHHHcc-CCCC--ceEEEeccccccc-cCCCC-eeEEE
Q 028547 49 QRILIVGCGNSAFS----EGMVDDGY-EDVVNVDISSVVIEAMMKKYS-NRPQ--LKYIKMDVRQMDE-FQTGS-FDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~G~~~----~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~-~~~~--~~~~~~d~~~~~~-~~~~~-fD~v~ 118 (207)
...+|+|+|+..=+ ..+++.+. ..++.+|++...+....+.+. ..+. +.-+++|...... .+..+ -=+++
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~f 159 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVF 159 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEE
Confidence 49999999987444 34444554 599999999998877655433 2233 3445566655321 22222 22333
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE-EEeCCc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL-VTYGAP 161 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~-~~~~~~ 161 (207)
....+..+ ++.....++.++...|+||-.|++ ++..++
T Consensus 160 lGStlGN~-----tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 160 LGSTLGNL-----TPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred ecccccCC-----ChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 34444444 678899999999999999988777 334444
No 322
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.31 E-value=0.2 Score=40.72 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=32.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
..|+|+|.|.|+++.++.-...-.|.++|-+....+.+++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4899999999999999976533499999999877666543
No 323
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.19 E-value=1.1 Score=36.17 Aligned_cols=92 Identities=11% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCcEEEEcCCC-chhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+||-+|||. |.++..+++. +..+++++|.+++-++.+++ +.. .. ..+ +.. ....+|+|+..--
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----~~-~~~--~~~--~~~g~d~viD~~G-- 231 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----TY-LID--DIP--EDLAVDHAFECVG-- 231 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----ee-ehh--hhh--hccCCcEEEECCC--
Confidence 34999999875 6666666653 44589999999888777764 211 11 111 111 1124898885311
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
. ......+....+.|+++|.+++....
T Consensus 232 ~--------~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 232 G--------RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred C--------CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 0 11245678889999999999877643
No 324
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.15 E-value=0.85 Score=35.59 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-ecc-ccccc-cCCCCeeEEEeCc
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDV-RQMDE-FQTGSFDSVVDKG 121 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-~d~-~~~~~-~~~~~fD~v~~~~ 121 (207)
++.+||-+|+|. |.++..+++. |...++++|.+++-++.+++.-.. .++. .+. ..... .....+|+|+..-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~g~d~vid~~ 195 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT----ALAEPEVLAERQGGLQNGRGVDVALEFS 195 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc----EecCchhhHHHHHHHhCCCCCCEEEECC
Confidence 334888888864 6666666665 443589999998888777663211 1111 010 11100 1234689988531
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++.+.+.|+++|.++....
T Consensus 196 -------------G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 196 -------------GATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred -------------CChHHHHHHHHHhcCCCEEEEecc
Confidence 113457778899999999987663
No 325
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.99 E-value=0.45 Score=32.27 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=56.8
Q ss_pred CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccc---c-ccc-cCCCCeeEEEeCcchhhhccCCCC
Q 028547 58 NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR---Q-MDE-FQTGSFDSVVDKGTLDSLLCGSNS 132 (207)
Q Consensus 58 ~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~---~-~~~-~~~~~fD~v~~~~~l~~~~~~~~~ 132 (207)
-|..+..+++....+++++|.++..++.+++.-.. .++..+-. + ... .+...+|+|+..-
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~----~~~~~~~~~~~~~i~~~~~~~~~d~vid~~----------- 66 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD----HVIDYSDDDFVEQIRELTGGRGVDVVIDCV----------- 66 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES----EEEETTTSSHHHHHHHHTTTSSEEEEEESS-----------
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc----ccccccccccccccccccccccceEEEEec-----------
Confidence 46677777775336999999999999998874311 22222111 1 111 2335899999641
Q ss_pred hhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 133 RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 133 ~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.....++...++|+++|.+++.....
T Consensus 67 --g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 --GSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --SSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --CcHHHHHHHHHHhccCCEEEEEEccC
Confidence 12457888899999999999887544
No 326
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.92 E-value=0.76 Score=39.26 Aligned_cols=97 Identities=16% Similarity=0.330 Sum_probs=61.9
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-----------c---------
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----------M--------- 106 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-----------~--------- 106 (207)
.+|+-+|+|. |..+...++. |. .|+++|.++..++.++. +. ..++..|..+ .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~-lG----a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS-MG----AEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-cC----CeEEeccccccccccccceeecCHHHHHHHH
Confidence 4999999987 5666666654 44 79999999998887776 32 2232333211 0
Q ss_pred cccC--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 107 DEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 107 ~~~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+. -..+|+|+....+.. ...+..+.+++.+.+|||++++=+..
T Consensus 239 ~~~~e~~~~~DIVI~TalipG-------~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPG-------KPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHhCCCCEEEECcccCC-------CCCCeeehHHHHhhCCCCCEEEEeee
Confidence 0011 346899987643332 13445578888999999998775544
No 327
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.45 E-value=2.1 Score=32.21 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=60.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
++||-.|++.| .+...+++.|+ +|++++-+++..+...+......++.++.+|+.+.... .-+..|.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 84 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG 84 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 38888888653 33344555677 89999988876665544433223678888888864211 0134677
Q ss_pred EEeCcchhhhccCCCCh-----------hhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSR-----------QNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~-----------~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++........ ...... .....+++.+.+.++++|.++++..
T Consensus 85 ii~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 85 LVVTVGGYVE-DTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred EEEcCCCcCC-CchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 7755322110 000000 1122345566667777888777653
No 328
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.45 E-value=1.9 Score=33.29 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=63.5
Q ss_pred CcEEEEcCCCchhhHHHHh----cC--CCcEEEEeCCH--------------------------HHHHHHHHHccCC---
Q 028547 49 QRILIVGCGNSAFSEGMVD----DG--YEDVVNVDISS--------------------------VVIEAMMKKYSNR--- 93 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~----~~--~~~v~~~D~s~--------------------------~~i~~~~~~~~~~--- 93 (207)
.-|+|+||--|..+..+.. .+ ..+++++|.-+ ..++..++++...
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence 3999999988876655432 12 13677777421 1345555555532
Q ss_pred -CCceEEEeccccccc-cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccccc
Q 028547 94 -PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRL 165 (207)
Q Consensus 94 -~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~ 165 (207)
.+++++.+.+.+-.| .+.+.+-++... .+.. +.....|+.++..|.|||++++-++..++.+.
T Consensus 156 ~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlY-------esT~~aLe~lyprl~~GGiIi~DDY~~~gcr~ 220 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLY-------ESTKDALEFLYPRLSPGGIIIFDDYGHPGCRK 220 (248)
T ss_dssp STTEEEEES-HHHHCCC-TT--EEEEEE-----SH-------HHHHHHHHHHGGGEEEEEEEEESSTTTHHHHH
T ss_pred cccEEEECCcchhhhccCCCccEEEEEEe--ccch-------HHHHHHHHHHHhhcCCCeEEEEeCCCChHHHH
Confidence 478999999877533 234444444433 2222 67889999999999999999998876654433
No 329
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.40 E-value=3 Score=33.41 Aligned_cols=89 Identities=10% Similarity=0.061 Sum_probs=54.9
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+.+||-.|+|. |.++..+++....++++++.+++..+.+++.-.. .++ +..+. ..+.+|+++....
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~----~vi--~~~~~---~~~~~d~~i~~~~---- 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA----SAG--GAYDT---PPEPLDAAILFAP---- 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc----eec--ccccc---CcccceEEEECCC----
Confidence 34899999753 5555666664323799999998888877664211 111 11111 1235787663211
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
....+....+.|+++|.+++...
T Consensus 233 ---------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 ---------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ---------cHHHHHHHHHhhCCCcEEEEEec
Confidence 12367888899999999987664
No 330
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.39 E-value=0.94 Score=36.64 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=55.5
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeC---CHHHHHHHHHHccCCCCceEEE---eccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDI---SSVVIEAMMKKYSNRPQLKYIK---MDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~---s~~~i~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.+||-+|+|. |.++..+++....++++++. ++..++.+++. .. .++. .+..+. .....+|+|+..
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga----~~v~~~~~~~~~~--~~~~~~d~vid~ 245 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GA----TYVNSSKTPVAEV--KLVGEFDLIIEA 245 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CC----EEecCCccchhhh--hhcCCCCEEEEC
Confidence 34899999875 67777777653238999886 67677766642 21 1211 111111 122468988864
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
- .....+....+.|+++|.+++...
T Consensus 246 ~-------------g~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 246 T-------------GVPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred c-------------CCHHHHHHHHHHccCCcEEEEEec
Confidence 1 112367788899999999887654
No 331
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.98 E-value=3.7 Score=32.29 Aligned_cols=74 Identities=15% Similarity=0.331 Sum_probs=47.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
++||-.|++.| .++..+++.|. +|+.++.+++.++...+.+.....+..+.+|+.+.... ..+..|+
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 88 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGIDV 88 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 47888887665 34445566677 89999998887776655554323445556887764211 1256899
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+...
T Consensus 89 vI~nAG~ 95 (296)
T PRK05872 89 VVANAGI 95 (296)
T ss_pred EEECCCc
Confidence 9987554
No 332
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.69 E-value=2.2 Score=31.14 Aligned_cols=96 Identities=15% Similarity=0.245 Sum_probs=59.2
Q ss_pred EEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--------C-----------CCceEEEecccccccc
Q 028547 51 ILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--------R-----------PQLKYIKMDVRQMDEF 109 (207)
Q Consensus 51 vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--------~-----------~~~~~~~~d~~~~~~~ 109 (207)
|.-+|+|+ | .++..++..|+ +|+.+|.+++.++.+++++.. . .++. ...|+.+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--- 76 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--- 76 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG---
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH---
Confidence 56688876 4 55566666777 999999999988887665432 0 1222 22333333
Q ss_pred CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
...|+|+-. +.. ..+-...+++++.+.+.|+.+|.-.+.+-+
T Consensus 77 --~~adlViEa-i~E-------~l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 77 --VDADLVIEA-IPE-------DLELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp --CTESEEEE--S-S-------SHHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred --hhhheehhh-ccc-------cHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 167888864 233 337788999999999999999887765444
No 333
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.69 E-value=0.7 Score=38.80 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=74.3
Q ss_pred cEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccc----cc--cCCCCeeEEEeC
Q 028547 50 RILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQM----DE--FQTGSFDSVVDK 120 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~----~~--~~~~~fD~v~~~ 120 (207)
.+|-+|-|.|.+..++--. +..+++++++.++++..+...+.-. .+..+...|..+. .. -.+..||+++..
T Consensus 298 ~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~d 377 (482)
T KOG2352|consen 298 KQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVD 377 (482)
T ss_pred cEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEE
Confidence 7888888889888777554 3359999999999999999877522 2334444444432 10 135578988852
Q ss_pred ---cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 121 ---GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 121 ---~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.-.+.+ ..+.+.--...++..+...|.|.|.|++......
T Consensus 378 vds~d~~g~-~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 378 VDSKDSHGM-QCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred CCCCCcccC-cCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 112222 3334445678889999999999999988664444
No 334
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.55 E-value=2.5 Score=33.66 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=57.1
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHH--cc--CCCCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKK--YS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~--~~--~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+|+-+|+|. |.++..|++.|. +|+.++-+.+.++..++. +. .............. +-..+.||+|+..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~--~~~~~~~D~viv~--- 77 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET--ADAAEPIHRLLLA--- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC--cccccccCEEEEE---
Confidence 789999986 566677777776 899999887666655542 11 10111111111111 1123578988842
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ..-+....++.+...+.++..++..-
T Consensus 78 v-------K~~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 78 C-------KAYDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred C-------CHHhHHHHHHHHHhhCCCCCEEEEEe
Confidence 1 11356778888999999988766543
No 335
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.45 E-value=1.3 Score=35.50 Aligned_cols=94 Identities=22% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccccccc-CCCCeeEEEeCc
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQMDEF-QTGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~~~~~-~~~~fD~v~~~~ 121 (207)
+.+||-.|+|. |.++..+++. |...+++++.+++..+.+++.-.. .++. .+....... ....+|+|+...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD----FVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 44888888754 5666666664 443399999998888777553211 1111 111111111 234699998531
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....+....+.|+++|.+++...
T Consensus 240 -------------g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 240 -------------GNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -------------CCHHHHHHHHHHhhcCCEEEEEcC
Confidence 112345667788999999987653
No 336
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.43 E-value=1.8 Score=31.98 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhc----CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc------ccCCC
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDD----GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------EFQTG 112 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~----~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~ 112 (207)
....+..|+|+|...|.-+.+.+.. |. .+|.++|++-..+..+... .+++.|+.++..++. ...++
T Consensus 66 w~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 66 WELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred HhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 3444459999999887666655543 42 3999999987654444332 268999999887751 01122
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.--+.++-..-|+. +....-++-..++|..|-.+++.+
T Consensus 143 y~kIfvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 143 YPKIFVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CCcEEEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEec
Confidence 22222222233333 556667777788999888887755
No 337
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.22 E-value=4.8 Score=30.73 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=48.0
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc----C------CCCeeE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q------TGSFDS 116 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~----~------~~~fD~ 116 (207)
++|-.|++.| .++..+++.|. +|+.++.+++.++....... ..++.++.+|+.+.... . .+++|.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 5777887654 34455666776 89999988877766655443 24678889999874211 0 356798
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 8876543
No 338
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.12 E-value=1.5 Score=35.80 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=56.2
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccc-ccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQ-MDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~-~~~~~~~~fD~v~~~~~ 122 (207)
.+||-.|+|. |.++..+++. |...|+++|.+++.++.+++. .. ..++. .+..+ ......+.+|+|+..-
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga---~~~i~~~~~~~~~~i~~~~~~g~d~vid~~- 267 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GA---TATVNAGDPNAVEQVRELTGGGVDYAFEMA- 267 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CC---ceEeCCCchhHHHHHHHHhCCCCCEEEECC-
Confidence 4788888764 6666666665 444699999999888888653 21 11111 11111 1111223689998531
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....+....+.|+++|.++....
T Consensus 268 ------------G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 268 ------------GSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ------------CChHHHHHHHHHHhcCCEEEEEcc
Confidence 112456777889999999887653
No 339
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.91 E-value=2.2 Score=30.72 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=60.9
Q ss_pred EEcCCCchhhHHHHhc-C-CCcEEEEeCCH--HHHHHHH---HHcc--CCCCceE-EEeccccccc---cCCCCeeEEEe
Q 028547 53 IVGCGNSAFSEGMVDD-G-YEDVVNVDISS--VVIEAMM---KKYS--NRPQLKY-IKMDVRQMDE---FQTGSFDSVVD 119 (207)
Q Consensus 53 diG~G~G~~~~~l~~~-~-~~~v~~~D~s~--~~i~~~~---~~~~--~~~~~~~-~~~d~~~~~~---~~~~~fD~v~~ 119 (207)
-+|=|.-+++..+++. + ...+++.-.+. +..+... .++. ...++.+ ...|+.++.. .....||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 3566666666777665 3 23566554333 3222211 2211 1123333 3457777632 24688999998
Q ss_pred CcchhhhccCC--------CChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 120 KGTLDSLLCGS--------NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 120 ~~~l~~~~~~~--------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+.+-.. .+. ....-...+++.+.++|+++|.+.++.....
T Consensus 82 NFPH~G--~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 82 NFPHVG--GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred eCCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 754332 111 1234578889999999999999999775443
No 340
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.71 E-value=5.2 Score=30.71 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=45.5
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++..+...+... ..+.++.+|+.+.... ..+..|.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 37888887554 44455666777 89999988765555444332 3577888888875211 1246788
Q ss_pred EEeCcc
Q 028547 117 VVDKGT 122 (207)
Q Consensus 117 v~~~~~ 122 (207)
++.+..
T Consensus 84 lv~~ag 89 (261)
T PRK08265 84 LVNLAC 89 (261)
T ss_pred EEECCC
Confidence 887643
No 341
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.47 E-value=1.8 Score=34.01 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=59.5
Q ss_pred cEEEEcCCC--chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+|+-+|.|. |.++..+...|+ ..+++.|.+...++.+... .+.....+.... ......|+|+..=++
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-----gv~d~~~~~~~~--~~~~~aD~VivavPi--- 74 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-----GVIDELTVAGLA--EAAAEADLVIVAVPI--- 74 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-----Ccccccccchhh--hhcccCCEEEEeccH---
Confidence 788888875 667777777776 3688999988777777643 222222111101 123457988865443
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.....+++++...|++|.++.=++..
T Consensus 75 -------~~~~~~l~~l~~~l~~g~iv~Dv~S~ 100 (279)
T COG0287 75 -------EATEEVLKELAPHLKKGAIVTDVGSV 100 (279)
T ss_pred -------HHHHHHHHHhcccCCCCCEEEecccc
Confidence 45588899999989987776544433
No 342
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.45 E-value=2.2 Score=34.52 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=56.4
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccc-ccc-cCCCCeeEEEeC
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQ-MDE-FQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~-~~~-~~~~~fD~v~~~ 120 (207)
+.+||-.|+|. |.++..+++. |...|+++|.+++..+.+++. .. -.++. .+..+ ... .....+|+|+..
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga---~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA---THTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC---ceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 34888888864 6666666665 443599999999888888653 21 11121 11111 100 122468988853
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
- . -...++...+.++++|.+++...
T Consensus 253 ~--g-----------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 V--G-----------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred C--C-----------CHHHHHHHHHHhccCCEEEEECC
Confidence 1 1 12346667889999999887653
No 343
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.44 E-value=3.8 Score=32.58 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=72.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCC-HHHHHHHHHHccCCC-----CceEEEeccccc-cc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYSNRP-----QLKYIKMDVRQM-DE 108 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s-~~~i~~~~~~~~~~~-----~~~~~~~d~~~~-~~ 108 (207)
+.+.+...+......|+.+|||-= +...--.+...+...|++ |+.++.-++.+++.. ..+++..|+.+. ++
T Consensus 81 fD~~~~~~~~~g~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~ 158 (297)
T COG3315 81 FDDFVRAALDAGIRQVVILGAGLD--TRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP 158 (297)
T ss_pred HHHHHHHHHHhcccEEEEeccccc--cceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence 334455555554459999999852 222211122234444444 445555555555433 688999999942 11
Q ss_pred --cC-----CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 --FQ-----TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 --~~-----~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.. ...-=++++-+++.++ +++....++..|.....||-.++...
T Consensus 159 ~~L~~~G~d~~~pt~~iaEGLl~YL-----~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 159 QALAAAGFDRSRPTLWIAEGLLMYL-----PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred HHHHhcCCCcCCCeEEEeccccccC-----CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 22 3334478888899888 88899999999999998877776654
No 344
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.33 E-value=2.8 Score=31.85 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-ccccCCCCeeEEEeCcchh
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~v~~~~~l~ 124 (207)
.+.+||..|+|+ |..+..+++....++++++.++...+.+++.... .-+.....+... ........+|+++....
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~-- 210 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD-HVIDYKEEDLEEELRLTGGGGADVVIDAVG-- 210 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc-eeccCCcCCHHHHHHHhcCCCCCEEEECCC--
Confidence 334999999986 6666666665335999999998877777543211 000000000000 00013457999985411
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
....+..+.+.|+++|.++....
T Consensus 211 -----------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 211 -----------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred -----------CHHHHHHHHHhcccCCEEEEEcc
Confidence 01356777889999999887653
No 345
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.24 E-value=1.5 Score=34.10 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=46.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+...+|+|+..|.++-.+.+++. .|+++|-.+-+ ..+-+.+.+.-...|..++.| ...+.|-.+|.
T Consensus 212 ~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma-----~sL~dtg~v~h~r~DGfk~~P-~r~~idWmVCD 277 (358)
T COG2933 212 GMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMA-----QSLMDTGQVTHLREDGFKFRP-TRSNIDWMVCD 277 (358)
T ss_pred CceeeecccCCCccchhhhhcce-EEEEeccchhh-----hhhhcccceeeeeccCccccc-CCCCCceEEee
Confidence 34889999999999999999987 99999976532 112222456666677777754 34567777665
No 346
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=90.18 E-value=2.7 Score=35.25 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=64.2
Q ss_pred CcEEEEcCCCch--hhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCceEEEec--cc-cccccC-CCCeeEEEeC
Q 028547 49 QRILIVGCGNSA--FSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMD--VR-QMDEFQ-TGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~--~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d--~~-~~~~~~-~~~fD~v~~~ 120 (207)
..+.|+|.|.|. ++....... ...++.||.+..+.........+. .+....... .. ...|.. ...||+|++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 378888887653 333333333 358999999999999988877652 111111111 11 112333 3459999998
Q ss_pred cchhhhccCCCChhhHHHHHHHHH-HhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVW-RVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~-~~L~pgG~~~~~~~~~ 160 (207)
..++.+.+. .......++.+ +..++|+.++++.-+.
T Consensus 282 h~l~~~~s~----~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 282 HKLHELGSK----FSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeccCCc----hhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 888876322 24444444444 5567788888776433
No 347
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=90.13 E-value=0.58 Score=36.03 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=36.3
Q ss_pred ccCHHHHHHhhCCC-CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHH
Q 028547 33 YPSLAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM 87 (207)
Q Consensus 33 ~~~~~~~l~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~ 87 (207)
...+...+...++. ...+++|+-||+|..+..+...+. .++.-|+++..+...+
T Consensus 5 K~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 5 KRKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK-RVIINDINPDLINFWK 59 (260)
T ss_dssp SGGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS-EEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc-ceeeeechHHHHHHHH
Confidence 34456666667775 445999999999999988876544 8999999998766665
No 348
>PRK09072 short chain dehydrogenase; Provisional
Probab=89.90 E-value=5.6 Score=30.47 Aligned_cols=73 Identities=15% Similarity=0.346 Sum_probs=48.0
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc--------CCCCeeEEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--------QTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~fD~v~ 118 (207)
++|-.|++.| .++..+++.|+ +|++++.++..++...+......++.++.+|+.+.... ..+..|.++
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv 85 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLI 85 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 7788887654 34555666777 89999998877766655443224678888888875211 024678888
Q ss_pred eCcch
Q 028547 119 DKGTL 123 (207)
Q Consensus 119 ~~~~l 123 (207)
.+...
T Consensus 86 ~~ag~ 90 (263)
T PRK09072 86 NNAGV 90 (263)
T ss_pred ECCCC
Confidence 76443
No 349
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.73 E-value=3 Score=32.66 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=52.6
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|.-+|+|. |.++..+.+.|. +|+++|.+++.++.+.+.- .+.....+. + .....|+|+..-+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g----~~~~~~~~~-~----~~~~aDlVilavp~---- 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG----LVDEASTDL-S----LLKDCDLVILALPI---- 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC----CcccccCCH-h----HhcCCCEEEEcCCH----
Confidence 466788875 566667777776 8999999998887776531 111111111 1 12357988865333
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVY 153 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~ 153 (207)
......++++...++++.++
T Consensus 68 ------~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 68 ------GLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ------HHHHHHHHHHHHhCCCCcEE
Confidence 34466778888888876544
No 350
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.41 E-value=4.2 Score=32.16 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=56.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+.||-=|.|+| .++.+++++|. .+...|++++......+...+...+....+|+.+.+.. .-+..|+
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~I 117 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVDI 117 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCceE
Confidence 48888888887 56778888887 88999999988777766665434688899999885321 3467899
Q ss_pred EEeCcchhh
Q 028547 117 VVDKGTLDS 125 (207)
Q Consensus 117 v~~~~~l~~ 125 (207)
++.+..+.+
T Consensus 118 LVNNAGI~~ 126 (300)
T KOG1201|consen 118 LVNNAGIVT 126 (300)
T ss_pred EEecccccc
Confidence 998765543
No 351
>PLN02740 Alcohol dehydrogenase-like
Probab=88.83 E-value=6.8 Score=32.09 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=56.4
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-----ccc-ccccCCCCeeEEEe
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~v~~ 119 (207)
+.+||-+|+|. |..+..+++. |...|+++|.+++.++.+++. .. -.++... +.+ ......+.+|+|+.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga---~~~i~~~~~~~~~~~~v~~~~~~g~dvvid 274 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI---TDFINPKDSDKPVHERIREMTGGGVDYSFE 274 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC---cEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 34899999865 6666666665 444699999999888888653 21 1122211 111 11112236899985
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.. .....+....+.++++ |.+++...
T Consensus 275 ~~-------------G~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 275 CA-------------GNVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CC-------------CChHHHHHHHHhhhcCCCEEEEEcc
Confidence 31 1124566777888886 88877553
No 352
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.77 E-value=2.7 Score=35.05 Aligned_cols=87 Identities=9% Similarity=0.160 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+++|+-+|+|. |......++. |. +|+.+|.++.-...++.. ..... +..+. -...|+|+..-
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~-----G~~~~--~~~e~----v~~aDVVI~at--- 265 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME-----GYEVM--TMEEA----VKEGDIFVTTT--- 265 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc-----CCEEc--cHHHH----HcCCCEEEECC---
Confidence 345999999997 6666655554 55 899999998776666542 11211 22221 13579998531
Q ss_pred hhccCCCChhhHHHHHHH-HHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKE-VWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~-~~~~L~pgG~~~~~~~ 158 (207)
.....+.. ..+.+++||.++.+..
T Consensus 266 ----------G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 266 ----------GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ----------CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 11234444 4889999999987663
No 353
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=88.70 E-value=0.4 Score=41.38 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=61.5
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---c----cCCCCe
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---E----FQTGSF 114 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~----~~~~~f 114 (207)
+.+.. .|||+||.+|.+++..++.-+ +-|+|+|+.|. ...+++..++.|+..-. + ...-+.
T Consensus 42 l~~a~-~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi---------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 42 LEKAH-VVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI---------KPIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccccc-hheeeccCCcHHHHHHHHhCCCCceEEEeeeeec---------ccCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 34444 999999999999998888632 48999999772 22245666666655420 0 123345
Q ss_pred eEEEeCcchhhhccCCCCh------hhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 115 DSVVDKGTLDSLLCGSNSR------QNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|+|+..+.-. + .+.+-. .-....++-+...|+.||.|+--.|.
T Consensus 112 dvVLhDgapn-V-g~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr 160 (780)
T KOG1098|consen 112 DVVLHDGAPN-V-GGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR 160 (780)
T ss_pred cEEeecCCCc-c-chhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence 8888654321 1 111000 12233444456788999997654443
No 354
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=88.44 E-value=4.4 Score=31.80 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccccc-CCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEF-QTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~-~~~~fD~v~~~~~l 123 (207)
++.|+-+| -.-..+..++-.+ +.++..+|+++..+....+..... .|+..+..|+.+..|. -...||+.+...+
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp- 230 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP- 230 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-
Confidence 34689898 3333344444444 469999999999999988766532 5789999999996431 2578999886533
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCC---cEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDK---GVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pg---G~~~~~~~ 158 (207)
..+ .....++.+=...|+.- |.|.+...
T Consensus 231 eTi-------~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 231 ETI-------KALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred hhH-------HHHHHHHhccHHHhcCCCccceEeeeec
Confidence 333 45566666555666654 66766553
No 355
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.26 E-value=5.2 Score=31.53 Aligned_cols=97 Identities=20% Similarity=0.315 Sum_probs=61.8
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-------CC------------CceEEEeccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (207)
+|--||+|+ +.++..++..|+ +|+.+|.+++.++.+.+++.. .. +++ ...|...
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~--- 81 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD--- 81 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH---
Confidence 788889985 455666677787 999999999998886654321 00 111 1222211
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhc-CCCcEEEEEEeCCc
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTYGAP 161 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~~~~~ 161 (207)
-...|+|+.. +.+ +.+-...++..+.+.+ +|+.++.-.+.+.+
T Consensus 82 --~~~~d~ViEa-v~E-------~~~~K~~l~~~l~~~~~~~~~il~snTS~~~ 125 (286)
T PRK07819 82 --FADRQLVIEA-VVE-------DEAVKTEIFAELDKVVTDPDAVLASNTSSIP 125 (286)
T ss_pred --hCCCCEEEEe-ccc-------CHHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 2356888864 233 3366778888888888 77777766554434
No 356
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.92 E-value=2.8 Score=34.54 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~ 90 (207)
++.+||-|++|....+. ++..++++|++||+++..+...+-+.
T Consensus 35 ~~d~vl~ItSaG~N~L~-yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALD-YLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCeEEEEccCCchHHH-HHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 33489999876554444 45555779999999998877766543
No 357
>PLN02827 Alcohol dehydrogenase-like
Probab=87.75 E-value=6.8 Score=32.09 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=54.8
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-----cccc-ccccCCCCeeEEEe
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-----DVRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-----d~~~-~~~~~~~~fD~v~~ 119 (207)
+.+||-.|+|. |.++..+++. |...++++|.+++..+.+++. .. -.++.. +..+ ......+.+|+|+.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga---~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GV---TDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC---cEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 34888888765 6666666664 444688999888888777553 21 111111 1111 11111236898885
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~ 157 (207)
.- .....+....+.++++ |.+++..
T Consensus 270 ~~-------------G~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 270 CV-------------GDTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CC-------------CChHHHHHHHHhhccCCCEEEEEC
Confidence 31 1123466778889998 9998754
No 358
>PTZ00357 methyltransferase; Provisional
Probab=87.59 E-value=4 Score=36.29 Aligned_cols=98 Identities=18% Similarity=0.330 Sum_probs=60.4
Q ss_pred cEEEEcCCCchhhHHHHhc----CC-CcEEEEeCCHHHHHHHHHHc---cCCC--------CceEEEecccccccc----
Q 028547 50 RILIVGCGNSAFSEGMVDD----GY-EDVVNVDISSVVIEAMMKKY---SNRP--------QLKYIKMDVRQMDEF---- 109 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~----~~-~~v~~~D~s~~~i~~~~~~~---~~~~--------~~~~~~~d~~~~~~~---- 109 (207)
.|+-+|+|=|-+.....+. +. -+++++|.++..+.....+. ..+. .++++..|+.++..-
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999776554442 32 28999999966443333332 2222 489999999997311
Q ss_pred ------CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCC----CcE
Q 028547 110 ------QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD----KGV 152 (207)
Q Consensus 110 ------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p----gG~ 152 (207)
.-+++|+||+- .|..+++. +--+..|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSE-LLGSFGDN----ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE-LLGSLGDN----ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHh-hhcccccc----cCCHHHHHHHHHhhhhhcccccc
Confidence 01368999964 34444222 3345566666666665 675
No 359
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.31 E-value=4.9 Score=32.04 Aligned_cols=92 Identities=20% Similarity=0.354 Sum_probs=55.3
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec---cccccccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+||-.|||. |..+..+++. |...+++++.+++..+.+++. .. -.++..+ +.... .....+|+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~---~~vi~~~~~~~~~~~-~~~~~vd~vld~~g 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA---DETVNLARDPLAAYA-ADKGDFDVVFEASG 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC---CEEEcCCchhhhhhh-ccCCCccEEEECCC
Confidence 34888888765 6666666664 444789999888877766553 21 1122111 11221 12245899985311
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....++.+.+.|+++|.++...
T Consensus 241 -------------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 -------------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1234677889999999988754
No 360
>PRK08324 short chain dehydrogenase; Validated
Probab=86.64 E-value=7.2 Score=34.82 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=62.2
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
++||-.|++.| .++..+++.|. +|+++|.++...+.+.+.+....++.++.+|+.+.... ..+.+|+
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDv 501 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDI 501 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 47888886444 33344555676 89999999877766655443224677888888764211 1246899
Q ss_pred EEeCcchhhhcc-CCCChh-----------hHHHHHHHHHHhcCC---CcEEEEEE
Q 028547 117 VVDKGTLDSLLC-GSNSRQ-----------NATQMLKEVWRVLKD---KGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~-~~~~~~-----------~~~~~l~~~~~~L~p---gG~~~~~~ 157 (207)
|+.+........ ...+.+ ....+++.+.+.+++ +|.+++..
T Consensus 502 vI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 502 VVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 887654321100 000111 134456666776665 57777654
No 361
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.51 E-value=13 Score=28.53 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=42.1
Q ss_pred CcEEEEcCCC--c---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIVGCGN--S---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+.+|-.|+++ | ..+..+++.|+ +|+.++.+.+..+..++.........++.+|+.+.... .-+..
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~l 89 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRL 89 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCC
Confidence 4788888765 3 34455666677 78888877543222222111112345677887764211 12568
Q ss_pred eEEEeCcch
Q 028547 115 DSVVDKGTL 123 (207)
Q Consensus 115 D~v~~~~~l 123 (207)
|+++.+..+
T Consensus 90 d~lv~nAg~ 98 (258)
T PRK07533 90 DFLLHSIAF 98 (258)
T ss_pred CEEEEcCcc
Confidence 998877543
No 362
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=86.41 E-value=7.3 Score=31.65 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=51.7
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-eccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.+||-.|+|. |.++..+++....++++++.+++....+.+.+.. ..++. .+........ +.+|+|+..-
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga---~~vi~~~~~~~~~~~~-~~~D~vid~~---- 255 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA---DSFLVSTDPEKMKAAI-GTMDYIIDTV---- 255 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC---cEEEcCCCHHHHHhhc-CCCCEEEECC----
Confidence 34788888865 6676777665333788887776543333222221 11111 1111111111 2588888531
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++...+.|+++|.++....
T Consensus 256 ---------g~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 256 ---------SAVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ---------CCHHHHHHHHHHhcCCcEEEEeCC
Confidence 112356778899999999887653
No 363
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.14 E-value=6.9 Score=31.63 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCcEEEEcC-C-CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe----cccc-ccccCCCCeeEEEeC
Q 028547 48 HQRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQ-MDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~-G-~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~----d~~~-~~~~~~~~fD~v~~~ 120 (207)
+.+||-.|+ | .|.++..+++....++++++.+++..+.+++.+... .++.. +..+ ......+.+|+|+..
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD---EAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC---EEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 348888887 3 577877777763337999998888777776433221 12211 1111 111122468988853
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. . ...+....+.|+++|.+++..
T Consensus 236 -----v--------G-~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 -----V--------G-GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -----C--------C-HHHHHHHHHHhccCCEEEEEC
Confidence 1 1 135677889999999988754
No 364
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.10 E-value=5.8 Score=32.78 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=49.6
Q ss_pred cEEEEcCCC-chhhHHH-HhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc--CCCCeeEEEeCcch
Q 028547 50 RILIVGCGN-SAFSEGM-VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~-G~~~~~l-~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~v~~~~~l 123 (207)
+||-||||. |+-.... ++.+-.+|+..|-+.+..+.+...... ++++.+.|+.+.... --..+|+|+...+.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~--~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG--KVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc--cceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 789999975 5555444 555535999999998877777665332 788999998886211 12345999876443
No 365
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.07 E-value=6.7 Score=30.83 Aligned_cols=94 Identities=17% Similarity=0.290 Sum_probs=56.7
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--------C------------CCceEEEecccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--------R------------PQLKYIKMDVRQMD 107 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--------~------------~~~~~~~~d~~~~~ 107 (207)
+|.-+|+|. +.++..++..|. +|+.+|.+++.++.++++... . .++. ...|..+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH-
Confidence 678888885 345556666676 999999999888877654210 0 0111 11222221
Q ss_pred ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 108 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-...|+|+..-+ . ..+....+++++...++++.++...+
T Consensus 82 ---~~~aDlVieavp-e-------~~~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 82 ---VKDADLVIEAVP-E-------DPEIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred ---hcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCCEEEECc
Confidence 235688886422 1 12456778888888888777654433
No 366
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.95 E-value=4.7 Score=32.42 Aligned_cols=93 Identities=15% Similarity=0.254 Sum_probs=54.2
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccccc-ccCCCCee-EEEeCc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQMD-EFQTGSFD-SVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~~~-~~~~~~fD-~v~~~~ 121 (207)
.+||-.|+|. |.++..+++. |...+++++.+++..+.+++. .. -.++.. +..+.. ......+| +|+..
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga---~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~- 236 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GA---MQTFNSREMSAPQIQSVLRELRFDQLILET- 236 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC---ceEecCcccCHHHHHHHhcCCCCCeEEEEC-
Confidence 4888888865 6666666664 443478999999888877542 21 011111 111110 01234577 55532
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
. .-...+....+.|+++|.+++...
T Consensus 237 ----~--------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 237 ----A--------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ----C--------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 1 113467778899999999887753
No 367
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.93 E-value=7.8 Score=30.49 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=55.1
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----------C------------CceEEEecccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----------P------------QLKYIKMDVRQ 105 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----------~------------~~~~~~~d~~~ 105 (207)
+|.-+|+|. +.++..++..|+ +|+.+|.+++.++.++++.... . ++.+. .|. +
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 81 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-E 81 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-H
Confidence 688899985 356666677777 9999999999887665432210 0 11111 111 1
Q ss_pred ccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 106 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.....|+|+..- .. .......+++++.+.++++.++.
T Consensus 82 ----~~~~aDlVieav-~e-------~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 ----SLSDADFIVEAV-PE-------KLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ----HhCCCCEEEEcC-cC-------cHHHHHHHHHHHHhhCCCCeEEE
Confidence 113468888642 11 12346778888888888877654
No 368
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=85.92 E-value=6.6 Score=30.41 Aligned_cols=77 Identities=18% Similarity=0.152 Sum_probs=46.2
Q ss_pred hHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHH
Q 028547 62 SEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQML 140 (207)
Q Consensus 62 ~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l 140 (207)
+..+.+.++ .+|+++|.++..++.+.+.- -+.-...+.... ..+|+|+..-++. ....++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g----~~~~~~~~~~~~-----~~~DlvvlavP~~----------~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELG----IIDEASTDIEAV-----EDADLVVLAVPVS----------AIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTT----SSSEEESHHHHG-----GCCSEEEE-S-HH----------HHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCC----CeeeccCCHhHh-----cCCCEEEEcCCHH----------HHHHHH
Confidence 345566663 49999999999988886641 122222221111 2469998765444 458899
Q ss_pred HHHHHhcCCCcEEEEEE
Q 028547 141 KEVWRVLKDKGVYILVT 157 (207)
Q Consensus 141 ~~~~~~L~pgG~~~~~~ 157 (207)
+++...+++|+++.=+.
T Consensus 63 ~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 63 EEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHHHCGS-TTSEEEE--
T ss_pred HHhhhhcCCCcEEEEeC
Confidence 99999998887665444
No 369
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=85.79 E-value=18 Score=30.04 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=55.7
Q ss_pred CcEEEEc-CC-CchhhHHHHhc---CCCcEEEEeCCHHHHHHHHHHccCCC---Cce--EEEe----cccc-ccc-cCCC
Q 028547 49 QRILIVG-CG-NSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSNRP---QLK--YIKM----DVRQ-MDE-FQTG 112 (207)
Q Consensus 49 ~~vLdiG-~G-~G~~~~~l~~~---~~~~v~~~D~s~~~i~~~~~~~~~~~---~~~--~~~~----d~~~-~~~-~~~~ 112 (207)
.+|+-+| +| -|..+..+++. |..+++++|.+++.++.+++...... ... ++.. ++.+ ... ....
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 4788886 44 47777777775 23479999999999888877532100 111 1211 1111 100 1234
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.+|+|+... .....+....+.++++|.+++.
T Consensus 257 g~D~vid~~-------------g~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 257 GFDDVFVFV-------------PVPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCEEEEcC-------------CCHHHHHHHHHHhccCCeEEEE
Confidence 689888531 1134567788999988876554
No 370
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=85.77 E-value=2.9 Score=30.70 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=58.3
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--C-----------CceEEE-eccccccccCCCC
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--P-----------QLKYIK-MDVRQMDEFQTGS 113 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~-----------~~~~~~-~d~~~~~~~~~~~ 113 (207)
+|--+|.|- | .++..+++.|+ +|+|+|++++.++..++-.... + .-++.. .|.... ...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~a----i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEA----IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHH----HHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhh----hhc
Confidence 455566664 3 45566777888 9999999999888776532110 0 112222 222221 123
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccccc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRL 165 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~ 165 (207)
.|+++..-....-.-+..+.......++.+.+.++++-++++.+-..++...
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 5666643111110011123356899999999999997777776555554444
No 371
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.69 E-value=8.3 Score=30.62 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=53.0
Q ss_pred cEEEEcCCC--chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+|.-||+|. +.++..+.+.+. .+|+++|.+++..+.+++.- .......+..+. ....|+|+..-...
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g----~~~~~~~~~~~~----~~~aDvViiavp~~-- 77 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG----LGDRVTTSAAEA----VKGADLVILCVPVG-- 77 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC----CCceecCCHHHH----hcCCCEEEECCCHH--
Confidence 788899886 344555555554 38999999998777665421 011111122111 23579888653322
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
....+++.+...++++.+++.+
T Consensus 78 --------~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 78 --------ASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred --------HHHHHHHHHHhhCCCCCEEEeC
Confidence 3356677777888888765543
No 372
>PRK12939 short chain dehydrogenase; Provisional
Probab=85.46 E-value=10 Score=28.51 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=43.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc----C-----CCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~fD 115 (207)
+++|-.|++.| .++..+++.|+ ++++++.+++.+....+.+.. ..++.++.+|+.+.... . -+..|
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 86 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLD 86 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 37787776433 23334455666 888888887766555444332 24678888898875211 0 14678
Q ss_pred EEEeCc
Q 028547 116 SVVDKG 121 (207)
Q Consensus 116 ~v~~~~ 121 (207)
.|+...
T Consensus 87 ~vi~~a 92 (250)
T PRK12939 87 GLVNNA 92 (250)
T ss_pred EEEECC
Confidence 887653
No 373
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.44 E-value=13 Score=31.83 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=66.3
Q ss_pred CcEEEEcCCCchhhHHHHhc---C--CCcEEEEeCCHHHHHHHHHHcc--CC--CCceEEEecccc-ccccCCCCeeEEE
Q 028547 49 QRILIVGCGNSAFSEGMVDD---G--YEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQ-MDEFQTGSFDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~---~--~~~v~~~D~s~~~i~~~~~~~~--~~--~~~~~~~~d~~~-~~~~~~~~fD~v~ 118 (207)
..|.|..||+|.++....+. + ...++|.+..+.+...++.+.. .. ........|-.. ..-....+||.|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 48999999999988754431 2 1368999999999888887632 11 122333333322 2111245699999
Q ss_pred eCcchhhhc-cC-----------------CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLL-CG-----------------SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~-~~-----------------~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++.++.... .+ ......-..++..+...|++||...++-
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 887664311 01 0011234567777888999999755543
No 374
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.27 E-value=5.6 Score=32.00 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=54.7
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccc-cCCCCeeEEEeCc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDE-FQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~-~~~~~fD~v~~~~ 121 (207)
.+||-.|+|. |..+..+++. |...++++|.+++..+.+++. .. ..++.. +..+ ... .....+|+|+...
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~---~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA---TDIVDYKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC---ceEecCCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 4888888763 5666666665 444689999988877777652 21 111111 1111 101 1234689888531
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+..+.+.|+++|.++...
T Consensus 244 -------------g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 244 -------------GGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred -------------CCHHHHHHHHHHhhcCCEEEEec
Confidence 11245778899999999988654
No 375
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.20 E-value=3.5 Score=33.85 Aligned_cols=102 Identities=12% Similarity=0.178 Sum_probs=55.7
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|+-+|+|. |..+...+.. |. +|+.+|.+++..+.+...+.. .+.....+..++.. .-..+|+|+..-.+..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~l~~-~l~~aDvVI~a~~~~g- 242 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--RIHTRYSNAYEIED-AVKRADLLIGAVLIPG- 242 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--eeEeccCCHHHHHH-HHccCCEEEEccccCC-
Confidence 4799999984 5555555554 55 899999998776666554422 11111111111111 1246899996421110
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
...+..+-++..+.++|+++++-+.+...
T Consensus 243 ------~~~p~lit~~~l~~mk~g~vIvDva~d~G 271 (370)
T TIGR00518 243 ------AKAPKLVSNSLVAQMKPGAVIVDVAIDQG 271 (370)
T ss_pred ------CCCCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence 01111233556677899988776655433
No 376
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.18 E-value=5.3 Score=31.41 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=56.5
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-------CC------------CceEEEeccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (207)
+|.-||+|. +.++..+++.|+ +|+.+|.+++.++.+.++... .. ++. ...+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~-- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAA-- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHh--
Confidence 678888874 345566667777 999999999988887653211 00 111 11122111
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-...|+|+..-+ . +......++.++.+.++++.++...+
T Consensus 79 --~~~aD~Vi~avp-e-------~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 79 --VADADLVIEAVP-E-------KLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred --hcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 234688885421 1 22345677788888888877665544
No 377
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.74 E-value=9 Score=25.23 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=54.3
Q ss_pred CCCchhhHHHHhc---CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEeCcchhhhccC
Q 028547 56 CGNSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLDSLLCG 129 (207)
Q Consensus 56 ~G~G~~~~~l~~~---~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~~~~l~~~~~~ 129 (207)
||.|.++..+++. +...++.+|.+++.++.+++. .+.++.+|..+.. ...-...+.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEVLERAGIEKADAVVILTD------- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHHHHHTTGGCESEEEEESS-------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhHHhhcCccccCEEEEccC-------
Confidence 3445566555543 223899999999998888765 4679999998852 123457887775311
Q ss_pred CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 130 SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+.....+-...+.+.|...++...
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1333444445567777777776655
No 378
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.60 E-value=14 Score=28.95 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=53.1
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEE-Ee-ccccccccCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYI-KM-DVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~-~~-d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+|+-+|+|. | .++..+++.|. +|+.++.+++.++..++.-.....-... .. -..+.. ....+|+|+..-.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~d~vila~k--- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA--ELGPQDLVILAVK--- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh--HcCCCCEEEEecc---
Confidence 578899886 3 45555666666 8999998776666555431100000000 00 011111 1257898885411
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
......+++.+...+.++..++...
T Consensus 76 -------~~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 76 -------AYQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred -------cccHHHHHHHHhhhcCCCCEEEEec
Confidence 1345778888888888776665543
No 379
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=84.41 E-value=14 Score=29.99 Aligned_cols=94 Identities=12% Similarity=0.173 Sum_probs=56.2
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-e----cccc-ccccCCCCeeEEEe
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-M----DVRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-~----d~~~-~~~~~~~~fD~v~~ 119 (207)
+.+||-.|+|. |..+..+++. |..+|+++|.+++.++.+++.-.. .++. . ++.+ ......+.+|+|+.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~----~~i~~~~~~~~~~~~v~~~~~~g~d~vid 261 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT----DCVNPNDYDKPIQEVIVEITDGGVDYSFE 261 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC----eEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 34888888864 6666667665 444799999999888888653211 1111 0 1111 10112236898885
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.- .-...+....+.++++ |.+++...
T Consensus 262 ~~-------------G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 262 CI-------------GNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CC-------------CCHHHHHHHHHHhhcCCCeEEEEec
Confidence 31 1133567778889886 98887664
No 380
>PRK05693 short chain dehydrogenase; Provisional
Probab=84.37 E-value=15 Score=28.25 Aligned_cols=68 Identities=21% Similarity=0.464 Sum_probs=41.8
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~v 117 (207)
++|-.|++.| .++..+++.|+ +|++++.+++.++.... .++.++.+|+.+.... ..+..|++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 76 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAA-----AGFTAVQLDVNDGAALARLAEELEAEHGGLDVL 76 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 5677776543 33444555676 89999988766554432 2456777887764211 12468988
Q ss_pred EeCcch
Q 028547 118 VDKGTL 123 (207)
Q Consensus 118 ~~~~~l 123 (207)
+.+...
T Consensus 77 i~~ag~ 82 (274)
T PRK05693 77 INNAGY 82 (274)
T ss_pred EECCCC
Confidence 876543
No 381
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.37 E-value=17 Score=29.58 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=62.7
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe----ccccc-cccCCCCeeEEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQM-DEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~----d~~~~-~~~~~~~fD~v~ 118 (207)
+.+.+|.-+|||. |...+.-++. +...++++|+++..++.|++.-. ..++.. |+.+. ....+...|.++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA----T~~vn~~~~~~vv~~i~~~T~gG~d~~~ 259 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA----THFVNPKEVDDVVEAIVELTDGGADYAF 259 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC----ceeecchhhhhHHHHHHHhcCCCCCEEE
Confidence 4445788888865 5555555543 45799999999999999987532 223322 22221 112334567665
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYR 164 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~ 164 (207)
-. . .....++.....+.++|..+++-...+..+
T Consensus 260 e~--~-----------G~~~~~~~al~~~~~~G~~v~iGv~~~~~~ 292 (366)
T COG1062 260 EC--V-----------GNVEVMRQALEATHRGGTSVIIGVAGAGQE 292 (366)
T ss_pred Ec--c-----------CCHHHHHHHHHHHhcCCeEEEEecCCCCce
Confidence 32 1 123367777778888999999887666543
No 382
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=84.19 E-value=5.8 Score=30.09 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=46.0
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHH-HccCCCCceEEEeccccc---cccCCCCeeEEEeC
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMK-KYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDK 120 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~-~~~~~~~~~~~~~d~~~~---~~~~~~~fD~v~~~ 120 (207)
+++-+|||. +.++..|.+.|. +|+.+|.+++.+..... . .....+++|..+. ....-..+|.+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~----~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE----LDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh----cceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 678889885 355556666777 99999999987776333 2 2567888888875 22345678888753
No 383
>PRK12829 short chain dehydrogenase; Provisional
Probab=84.00 E-value=6.8 Score=29.85 Aligned_cols=72 Identities=21% Similarity=0.362 Sum_probs=45.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+++|-.|+..| .++..+++.|+ +|++++-++...+...+..... ++.++..|+.+.... ...+.|.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 89 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAVERFGGLDV 89 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 48888887543 33344555677 8999998877666555444332 567788888875211 0146898
Q ss_pred EEeCcc
Q 028547 117 VVDKGT 122 (207)
Q Consensus 117 v~~~~~ 122 (207)
|+....
T Consensus 90 vi~~ag 95 (264)
T PRK12829 90 LVNNAG 95 (264)
T ss_pred EEECCC
Confidence 886543
No 384
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=83.90 E-value=6.5 Score=29.86 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=40.1
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQ 105 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~ 105 (207)
-|++||.|.|..+..+...+.+....+++++..+.-.+-..+.. ....+...|+..
T Consensus 53 ~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 53 YVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred eeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 78999999999999999988789999999987665554433221 234444455443
No 385
>PRK07576 short chain dehydrogenase; Provisional
Probab=83.75 E-value=14 Score=28.36 Aligned_cols=72 Identities=18% Similarity=0.325 Sum_probs=43.1
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|.+.| .+...++..|+ +|++++.+++.+....+.+.. ..++.++.+|+.+.... .....|
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD 88 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPID 88 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 37777776443 23344555676 899999887766554433322 13457778888764211 124679
Q ss_pred EEEeCc
Q 028547 116 SVVDKG 121 (207)
Q Consensus 116 ~v~~~~ 121 (207)
.++.+.
T Consensus 89 ~vi~~a 94 (264)
T PRK07576 89 VLVSGA 94 (264)
T ss_pred EEEECC
Confidence 988654
No 386
>PRK10083 putative oxidoreductase; Provisional
Probab=83.71 E-value=10 Score=30.23 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=54.0
Q ss_pred CCcEEEEcCCC-chhhHHHHh-c-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGN-SAFSEGMVD-D-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~-~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+||-.|+|. |..+..+++ . |...+++++.+++..+.+++.-... -+.....++.+...-....+|+|+...
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~-~i~~~~~~~~~~~~~~g~~~d~vid~~--- 236 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW-VINNAQEPLGEALEEKGIKPTLIIDAA--- 236 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE-EecCccccHHHHHhcCCCCCCEEEECC---
Confidence 34888888754 566666666 3 6656888998888887776532110 001111111111000112345666421
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....+....+.|+++|.++....
T Consensus 237 ----------g~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 237 ----------CHPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ----------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 112357778899999999987654
No 387
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=83.57 E-value=15 Score=30.21 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=61.9
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCch----hhHHHHhc--CC-C-cEEEEeC----CHHHHHHHHHHccCC---CC--ceEE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSA----FSEGMVDD--GY-E-DVVNVDI----SSVVIEAMMKKYSNR---PQ--LKYI 99 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~----~~~~l~~~--~~-~-~v~~~D~----s~~~i~~~~~~~~~~---~~--~~~~ 99 (207)
..+++.......-+|+|+|.|.|. +...++.+ |+ . ++|+++. +...++.+.+++... -+ .+|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 455555544444499999999993 44444443 22 2 8999998 777777777765421 12 3333
Q ss_pred Ee---cccccc--cc--CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 100 KM---DVRQMD--EF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 100 ~~---d~~~~~--~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.. ++.++. .+ ..+..=+|-+...+|++.........+...+-...+.|+|.-+.++
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 32 222221 11 1222223334445576642222223333444455567899744444
No 388
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=83.47 E-value=11 Score=30.58 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=54.5
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe--cccc-ccccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVRQ-MDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~--d~~~-~~~~~~~~fD~v~~~~~ 122 (207)
+.+||-.|+|. |..+..+++. |...|++++.++...+.+++. ....-+..... ++.+ ........+|+|+..-
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~- 262 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GATDFINPKDSDKPVSEVIREMTGGGVDYSFECT- 262 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCCcEeccccccchHHHHHHHHhCCCCCEEEECC-
Confidence 34888888754 5555556654 444799999998888887552 21000011110 0111 1111224689988531
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.....+....+.++++ |.++....
T Consensus 263 ------------g~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 263 ------------GNADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ------------CChHHHHHHHHhcccCCCEEEEEcC
Confidence 1123567778889885 99887654
No 389
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=83.41 E-value=23 Score=29.64 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=57.5
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCce-----EEEeccccccccCCCCeeEEEeC
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLK-----YIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~-----~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+|.-+|.|. +.++..+++.|+ +|+++|.+++.++..+...... +.+. .......... ...+..|+|+..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~~~~~aDvvii~ 82 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-TTPEPADAFLIA 82 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-cccccCCEEEEE
Confidence 677788875 355566677787 9999999998887643211000 0000 0000000000 011246777753
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
-.-..-..+..........++.+.+.+++|.+++..+-..++
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 221100000112246667778889999988777665544443
No 390
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=83.41 E-value=13 Score=29.86 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=30.8
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
+.+||-.|+|. |..+..+++....+++++|.+++.++.+++
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34899999965 666666666532379999999988888865
No 391
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.15 E-value=4.7 Score=33.16 Aligned_cols=113 Identities=10% Similarity=0.035 Sum_probs=69.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHH----------ccCC-CCceEEEecc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKK----------YSNR-PQLKYIKMDV 103 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~----------~~~~-~~~~~~~~d~ 103 (207)
+..+++.+-..+.....|+|+|-|.+..+.+..+ ...-.|+++....-+.+..+ +... ..+.++++++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 4445554433333489999999999999888764 34667777665433333221 2221 3466777776
Q ss_pred ccccc--cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 104 RQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 104 ~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
....- .-....++|+++++... .+...-++++..-+++|-.++-.
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~Fd--------p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAFD--------PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccCC--------HHHHHhhHHHHhhCCCcceEecc
Confidence 66410 12345688888876553 44555556888888888777653
No 392
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.15 E-value=15 Score=28.78 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=56.8
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCH-HHHHHHHHHccC-CCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISS-VVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~-~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+++|-.|++.| .++..+++.|. +|+.++.++ ...+.....+.. ..++.++.+|+.+.... .....
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 37888887654 44455666777 888887654 222222222221 23577888888764211 01357
Q ss_pred eEEEeCcchhhhc--cCCCCh-----------hhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLL--CGSNSR-----------QNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~--~~~~~~-----------~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.++.+....... ....+. ...-.+++.+.+.++++|.+++++
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 8888654322110 001111 123344455566667777777655
No 393
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.14 E-value=15 Score=28.96 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=50.8
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceE-EEeccc-cccccCCCCeeEEEeCcch
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKY-IKMDVR-QMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~-~~~d~~-~~~~~~~~~fD~v~~~~~l 123 (207)
+|+-+|+|. | .++..+++.|. +|+.++. ++.++..++.-.. ...... ...... +.. .....+|+|+..-.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vilavk- 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPE-ELTGPFDLVILAVK- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHH-HccCCCCEEEEEec-
Confidence 578888886 3 45556666666 8999988 6555555432100 000000 011111 111 11256898775311
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
......+++.+...+.++..++..
T Consensus 78 ---------~~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 78 ---------AYQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred ---------ccCHHHHHHHHHhhcCCCCEEEEe
Confidence 134577788888888887665544
No 394
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.09 E-value=21 Score=28.22 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=53.9
Q ss_pred CcEEEEcCC-CchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCG-NSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+||-.|+| .|..+..+++. |. ++++++.+++..+.+++. .. . .++...-........+.+|+++....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~-g~--~-~~~~~~~~~~~~~~~~~~d~vi~~~~---- 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL-GA--D-EVVDSGAELDEQAAAGGADVILVTVV---- 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh-CC--c-EEeccCCcchHHhccCCCCEEEECCC----
Confidence 378888886 46666666665 44 899999999888777542 21 0 11111100000001246898885311
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....+..+.+.|+++|.++...
T Consensus 235 ---------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ---------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ---------cHHHHHHHHHhcccCCEEEEEC
Confidence 1235677789999999988764
No 395
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=82.93 E-value=11 Score=29.68 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=55.6
Q ss_pred CCcEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEEeCc
Q 028547 48 HQRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~~~~ 121 (207)
+.+||-.|+ +.|..+..+++....++++++.+++..+.+++ +.. -.++.. ++.+ ........+|+|+..
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga---~~vi~~~~~~~~~~v~~~~~~gvd~vld~- 218 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGF---DAVFNYKTVSLEEALKEAAPDGIDCYFDN- 218 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC---CEEEeCCCccHHHHHHHHCCCCcEEEEEC-
Confidence 348888774 45777777777533389999988888888766 321 112211 1111 111123568988853
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. . ...++...+.|+++|.++...
T Consensus 219 ----~--------g-~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 219 ----V--------G-GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred ----C--------C-HHHHHHHHHhhccCCEEEEEc
Confidence 1 1 135678899999999987654
No 396
>PRK07109 short chain dehydrogenase; Provisional
Probab=82.93 E-value=18 Score=29.11 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=47.1
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++||-.|++.| .++..+++.|+ +|+.++-+++.++...+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD 87 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPID 87 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 37788887655 33445566777 899999888776665554432 24577888888775211 124689
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
+++.+..
T Consensus 88 ~lInnAg 94 (334)
T PRK07109 88 TWVNNAM 94 (334)
T ss_pred EEEECCC
Confidence 8887654
No 397
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=82.69 E-value=15 Score=28.22 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=53.3
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+||-.|+|. |..+..+++. |...+++++.+++..+.+++.-.. .. +... .+. ......+|+|+....
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~-~~--~~~~--~~~-~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA-DP--VAAD--TAD-EIGGRGADVVIEASG---- 168 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC-cc--cccc--chh-hhcCCCCCEEEEccC----
Confidence 4788888765 5666666664 442399999888887766653200 01 1110 000 012346898885311
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....+....+.|+++|.++...
T Consensus 169 ---------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ---------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ---------ChHHHHHHHHHhcCCcEEEEEe
Confidence 1235677788999999988654
No 398
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.69 E-value=16 Score=28.60 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=57.1
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------CCC------------CceEEEeccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NRP------------QLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-------~~~------------~~~~~~~d~~~~~~ 108 (207)
+|--+|+|. +.++..++..|+ +|+++|.+++.++.+++++. ... ++.+ ..|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~---- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD---- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH----
Confidence 577788884 566677777777 99999999998865443211 100 1111 12221
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....|+|+..- .. ...-...+++++.+.++++.++...+
T Consensus 79 -~~~~aDlVi~av-~e-------~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 79 -DLKDADLVIEAA-TE-------NMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred -HhccCCeeeecc-cc-------cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 124568888541 11 12445688999999999988774434
No 399
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=82.39 E-value=19 Score=29.12 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=52.7
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-eccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.+||-.|+|. |..+..+++....++++++.+++....+.+.+.. . .++. .+...... ....+|+|+..-
T Consensus 181 g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga--~-~~i~~~~~~~~~~-~~~~~D~vid~~---- 252 (357)
T PLN02514 181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA--D-DYLVSSDAAEMQE-AADSLDYIIDTV---- 252 (357)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC--c-EEecCCChHHHHH-hcCCCcEEEECC----
Confidence 34777777754 6666666665323788888777666555544432 1 1111 11111111 112578888531
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++.+.+.|+++|.++....
T Consensus 253 ---------g~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 253 ---------PVFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---------CchHHHHHHHHHhccCCEEEEECC
Confidence 112356777889999999887653
No 400
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.20 E-value=15 Score=29.13 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=54.4
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc---cccCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~l 123 (207)
.+||-.|+|. |..+..+++. |...+++++.+++..+.+++.-.. .++..+-.+. .......+|+++....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~vd~v~~~~~- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT----ETVDPSREDPEAQKEDNPYGFDVVIEATG- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe----EEecCCCCCHHHHHHhcCCCCcEEEECCC-
Confidence 4888888653 5566666665 342388888888887777543211 1221111110 0113456899985311
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....+..+.+.|+++|.++...
T Consensus 236 ------------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 236 ------------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ------------ChHHHHHHHHHHhcCCEEEEEe
Confidence 1345777789999999988754
No 401
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.08 E-value=14 Score=29.79 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=59.3
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-------C--------CCceEEEeccccccccCC
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------R--------PQLKYIKMDVRQMDEFQT 111 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-------~--------~~~~~~~~d~~~~~~~~~ 111 (207)
++|--||+|+ ..++..++..|+ +|+..|.+++.++.+..++.. . .++.+. .++.+ .-
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~----av 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA----CV 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH----Hh
Confidence 3788899985 456666777788 999999999877765543220 0 111211 12111 12
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...|+|+-. +... .+-...++.++.+.++|+.++.-.+
T Consensus 82 ~~aDlViEa-vpE~-------l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 82 ADADFIQES-APER-------EALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred cCCCEEEEC-CcCC-------HHHHHHHHHHHHHhCCCCeEEEECC
Confidence 356888864 2332 3667788899999999987544444
No 402
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=81.71 E-value=8.2 Score=27.33 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=55.2
Q ss_pred cEEEEcCCCc--hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CC------CceEEEeccccccccCCCCeeEEE
Q 028547 50 RILIVGCGNS--AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RP------QLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G--~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~------~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+|.-+|+|.+ .++..++..+. +|+....+++.++..++.-.. .+ ++.+ ..|+.+. -+..|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a----~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA----LEDADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH----HTT-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH----hCcccEEE
Confidence 3566888875 34445566665 999999999888877765331 11 2222 2333332 13568888
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..-+- .....+++++...++++-.++...
T Consensus 75 iavPs----------~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAVPS----------QAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-G----------GGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ecccH----------HHHHHHHHHHhhccCCCCEEEEec
Confidence 64222 455889999999997766666543
No 403
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.65 E-value=16 Score=28.90 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=56.0
Q ss_pred CCcEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe----ccccc-cccCCCCeeEEEeC
Q 028547 48 HQRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQM-DEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~----d~~~~-~~~~~~~fD~v~~~ 120 (207)
+.+||-.|+ |.|..+..+++....++++++.+++..+.+++ +.. -.++.. +..+. .....+.+|+|+..
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa---~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGF---DVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC---CEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 348888884 45777777777633389999988888777754 321 111111 11111 11123468998853
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
- . ...+....++|+++|.++...
T Consensus 215 ~--G------------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 215 V--G------------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred C--C------------HHHHHHHHHHhCcCcEEEEec
Confidence 1 1 123577889999999998754
No 404
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.63 E-value=17 Score=28.59 Aligned_cols=93 Identities=18% Similarity=0.326 Sum_probs=56.1
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--------CC-----------CCceEEEeccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--------NR-----------PQLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--------~~-----------~~~~~~~~d~~~~~~ 108 (207)
+|.-||+|. +.++..++..|. +|+.+|.+++.++.+.++.. .. .++.+ ..+...
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 80 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED--- 80 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH---
Confidence 688888885 355566677777 99999999988877543221 00 01111 122211
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-...|+|+..- .. .......+++.+...++++.+++..+
T Consensus 81 --~~~aD~Vieav-pe-------~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 81 --LADCDLVIEAA-TE-------DETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred --hcCCCEEEEcC-cC-------CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 23568888641 11 12345677888999999987765433
No 405
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.61 E-value=9.4 Score=26.53 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=52.5
Q ss_pred EEEEcCCC-chh-hHHHHhcCCCcEEEEeCCHHHHHHHHHHcc---CCC-CceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 51 ILIVGCGN-SAF-SEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 51 vLdiG~G~-G~~-~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~---~~~-~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
|+-+|+|. |.+ +..|.+.+. +|+.+.-.+ .++..++.-- ... +..+...............+|+|+..-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v--- 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV--- 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S---
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe---
Confidence 46677775 443 344445556 999999877 5555444311 101 111111111111012457899998641
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...+....++.+.+.+.++..+++..
T Consensus 76 -------Ka~~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 76 -------KAYQLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp -------SGGGHHHHHHHHCTGEETTEEEEEES
T ss_pred -------cccchHHHHHHHhhccCCCcEEEEEe
Confidence 11466778899999999997766544
No 406
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=81.48 E-value=27 Score=28.35 Aligned_cols=94 Identities=13% Similarity=0.247 Sum_probs=55.7
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-----cccc-ccccCCCCeeEEEe
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-----DVRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-----d~~~-~~~~~~~~fD~v~~ 119 (207)
+.+||-.|+|. |.++..+++. |...++++|.+++.++.+++ +.. -.++.. ++.+ ......+.+|+|+.
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-lGa---~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-FGA---TDCVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC---CEEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 34888888754 5666666665 44469999999988887754 321 111211 1111 10112236899885
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.- .-...+....+.|+++ |.++....
T Consensus 263 ~~-------------g~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 263 CI-------------GNVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CC-------------CChHHHHHHHHhhccCCCeEEEEcc
Confidence 31 1123567778899887 98887654
No 407
>PRK07806 short chain dehydrogenase; Provisional
Probab=81.42 E-value=21 Score=26.93 Aligned_cols=108 Identities=11% Similarity=0.123 Sum_probs=55.8
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCH-HHHHHHHHHccC-CCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISS-VVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~-~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+++|-.|+..| .+...+++.|+ +|++++-+. ...+.....+.. ..++.++.+|+.+.... .-+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGL 85 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 47888887544 23344455666 788876543 223322222221 13567788888875211 01357
Q ss_pred eEEEeCcchhhhccC------CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCG------SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~------~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.++.+......... ..+......+++.+.+.++.+|.+++++
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 86 DALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred cEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 887765432110000 0011234566677777776667766654
No 408
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.24 E-value=3.8 Score=28.75 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=24.4
Q ss_pred EEcCCCc--hhhHHHH--hcCC-CcEEEEeCCHHHHHHHHHH
Q 028547 53 IVGCGNS--AFSEGMV--DDGY-EDVVNVDISSVVIEAMMKK 89 (207)
Q Consensus 53 diG~G~G--~~~~~l~--~~~~-~~v~~~D~s~~~i~~~~~~ 89 (207)
|+|++.| .....+. ..+. ..++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555543 3333 4899999999999888888
No 409
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=81.01 E-value=18 Score=30.08 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=63.5
Q ss_pred CcEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc----------c----cccCCC
Q 028547 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----------M----DEFQTG 112 (207)
Q Consensus 49 ~~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~----------~----~~~~~~ 112 (207)
.+|--+|-|- | -++..++..|+ +|+|+|+++..++...+-- .....-+... + ++....
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~-----~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGE-----SYIEEPDLDEVVKEAVESGKLRATTDPEELK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCc-----ceeecCcHHHHHHHHHhcCCceEecChhhcc
Confidence 4777777664 3 34455666777 9999999998887765421 1111111111 0 000111
Q ss_pred CeeEEE-eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccc
Q 028547 113 SFDSVV-DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166 (207)
Q Consensus 113 ~fD~v~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~ 166 (207)
.-|+++ +..+.-.- ....+........+.+.+.|++|-.+++.+-..|+....
T Consensus 84 ~~dv~iI~VPTPl~~-~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~ 137 (436)
T COG0677 84 ECDVFIICVPTPLKK-YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEE 137 (436)
T ss_pred cCCEEEEEecCCcCC-CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHH
Confidence 345433 33222110 233455678899999999999988888876555554444
No 410
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.70 E-value=6.3 Score=29.95 Aligned_cols=73 Identities=15% Similarity=0.290 Sum_probs=47.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++||-.|++.| .++..+++.|+ +|++++.++...+...+.... ..++.++..|+.+.... .-+..|
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d 84 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVD 84 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCcc
Confidence 37888887655 44555666777 899999888766555544332 24578888888764211 114679
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
.|+.+..
T Consensus 85 ~vi~~ag 91 (258)
T PRK07890 85 ALVNNAF 91 (258)
T ss_pred EEEECCc
Confidence 8887653
No 411
>PRK07677 short chain dehydrogenase; Provisional
Probab=80.67 E-value=6.6 Score=29.84 Aligned_cols=72 Identities=19% Similarity=0.383 Sum_probs=45.6
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|++.| .++..+++.|. +|++++-++...+...+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 36787887665 34455566677 899999887666555544332 14677888888764211 124679
Q ss_pred EEEeCc
Q 028547 116 SVVDKG 121 (207)
Q Consensus 116 ~v~~~~ 121 (207)
.++.+.
T Consensus 81 ~lI~~a 86 (252)
T PRK07677 81 ALINNA 86 (252)
T ss_pred EEEECC
Confidence 888654
No 412
>PRK06139 short chain dehydrogenase; Provisional
Probab=79.97 E-value=13 Score=29.98 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=48.2
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++||-.|++.| .++..+++.|+ +|+.++-+++.++...+.+.. ...+.++..|+.+.... ..+.+|
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 86 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRID 86 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 37888887655 34455666777 899999888877766554432 23566778888764211 125689
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
+++.+...
T Consensus 87 ~lVnnAG~ 94 (330)
T PRK06139 87 VWVNNVGV 94 (330)
T ss_pred EEEECCCc
Confidence 98877543
No 413
>PRK05650 short chain dehydrogenase; Provisional
Probab=79.82 E-value=7.6 Score=29.88 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=44.5
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCeeE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+||-.|+.+| .++..+++.|. +|+.++.+.+..+.....+.. ..++.++.+|+.+.... ..+.+|.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5777776554 34445566676 899998887665554443332 24677888888764211 1246898
Q ss_pred EEeCcc
Q 028547 117 VVDKGT 122 (207)
Q Consensus 117 v~~~~~ 122 (207)
++.+..
T Consensus 81 lI~~ag 86 (270)
T PRK05650 81 IVNNAG 86 (270)
T ss_pred EEECCC
Confidence 887644
No 414
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=79.77 E-value=5.4 Score=31.96 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=45.3
Q ss_pred EEEcCCCchhhHHHHh--cCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccc---c---ccCCCCeeEEEeC
Q 028547 52 LIVGCGNSAFSEGMVD--DGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM---D---EFQTGSFDSVVDK 120 (207)
Q Consensus 52 LdiG~G~G~~~~~l~~--~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~---~---~~~~~~fD~v~~~ 120 (207)
+|||.|.-.+-..+.. .++ ...+.|+.......++.+.... ..+.+++....+- + ..++..||+++|+
T Consensus 107 iDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 7888877544333322 234 7889999998889988887643 3344444432221 1 1235579999999
Q ss_pred cchh
Q 028547 121 GTLD 124 (207)
Q Consensus 121 ~~l~ 124 (207)
.++.
T Consensus 186 PPFf 189 (419)
T KOG2912|consen 186 PPFF 189 (419)
T ss_pred Cchh
Confidence 8774
No 415
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.64 E-value=24 Score=28.19 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=56.9
Q ss_pred CCcEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---e-cccc-ccccCCCCeeEEEeC
Q 028547 48 HQRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---M-DVRQ-MDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~-d~~~-~~~~~~~~fD~v~~~ 120 (207)
+.+||-.|+ |.|..+..+++....++++++.+++..+.+++.+... .++. . +..+ ........+|+|+..
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD---DAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc---eeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 348888886 4577777777753337888888888877777644321 1121 1 2111 111112568988853
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. . ...+....+.|+++|.++...
T Consensus 229 -----~-------g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 -----V-------G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred -----C-------C--HHHHHHHHHHhccCcEEEEec
Confidence 1 1 135678889999999988654
No 416
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.63 E-value=13 Score=29.65 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=55.8
Q ss_pred CcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEEeCc
Q 028547 49 QRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~~~~ 121 (207)
.+||-.|+ |.|..+..+++. |..++++++.+++..+.+++.+... .++.. ++.+ ........+|+|+..-
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~---~vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD---AAINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc---EEEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 48888886 457777777775 3337999998888777776644321 12211 1111 1111235689998531
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ...+....+.|+++|.++...
T Consensus 233 --g------------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 --G------------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred --C------------cHHHHHHHHHhccCCEEEEEe
Confidence 1 112567789999999998754
No 417
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=79.42 E-value=9.5 Score=27.77 Aligned_cols=102 Identities=15% Similarity=0.281 Sum_probs=55.8
Q ss_pred HHHHHHhhCC--CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-----CCceEEEecccccc
Q 028547 36 LAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMD 107 (207)
Q Consensus 36 ~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~ 107 (207)
+.+.+..++. +....|+.+|||-=.....+..... ..++-+|. ++.++.-++.++.. .+.+++.+|+.+..
T Consensus 65 iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~ 143 (183)
T PF04072_consen 65 IDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDS 143 (183)
T ss_dssp HHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHH
T ss_pred HHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchh
Confidence 3444555552 2223899999998766666666432 24555553 33444444444322 24678999998631
Q ss_pred --------ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHH
Q 028547 108 --------EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143 (207)
Q Consensus 108 --------~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~ 143 (207)
.+.....-++++-+++.++ +++....+++.+
T Consensus 144 ~~~~L~~~g~~~~~ptl~i~Egvl~Yl-----~~~~~~~ll~~i 182 (183)
T PF04072_consen 144 WIDALPKAGFDPDRPTLFIAEGVLMYL-----SPEQVDALLRAI 182 (183)
T ss_dssp HHHHHHHCTT-TTSEEEEEEESSGGGS------HHHHHHHHHHH
T ss_pred hHHHHHHhCCCCCCCeEEEEcchhhcC-----CHHHHHHHHHHh
Confidence 1224455678888888888 666777776654
No 418
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.34 E-value=27 Score=28.21 Aligned_cols=72 Identities=15% Similarity=0.340 Sum_probs=41.0
Q ss_pred cEEEEcCCCchhhHHHHh----cCCCcEEEEeCCHHHHH-----------------------HHHHHccCCCCceEEEec
Q 028547 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIE-----------------------AMMKKYSNRPQLKYIKMD 102 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~----~~~~~v~~~D~s~~~i~-----------------------~~~~~~~~~~~~~~~~~d 102 (207)
+||-||+|. +++++.+ .|+.++..+|.+..-+. ...++++. -.+.+...+
T Consensus 42 kiLviGAGG--LGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~-~~v~~h~~k 118 (422)
T KOG2015|consen 42 KILVIGAGG--LGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG-CVVVPHRQK 118 (422)
T ss_pred cEEEEccCc--ccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC-cEEeeeecc
Confidence 899998754 4455544 46667777776543221 12222222 134566667
Q ss_pred cccccccCCCCeeEEEeCcchhhh
Q 028547 103 VRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 103 ~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+.+...---..||+|++. ++.+
T Consensus 119 Iqd~~~~FYk~F~~iicG--LDsI 140 (422)
T KOG2015|consen 119 IQDKPISFYKRFDLIICG--LDSI 140 (422)
T ss_pred hhcCCHHHHhhhceEEec--ccch
Confidence 776522123579999986 6655
No 419
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.33 E-value=18 Score=31.82 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=58.1
Q ss_pred cEEEEcCCC-chhhH-HHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN-SAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~-G~~~~-~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l~ 124 (207)
+|+-+|+|. |.... .+.+.+. +++.+|.+++.++.+++. ...++.+|..+..- ..-++.|.+++. .+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vv~~--~~ 473 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRAAGAEKAEAIVIT--CN 473 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHhcCCccCCEEEEE--eC
Confidence 788888775 44333 3344456 999999999999888653 56789999988521 234567877753 11
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+.....+-...+.+.|+..++...
T Consensus 474 --------d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 474 --------EPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred --------CHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 1222223333455567777776644
No 420
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=79.24 E-value=8.6 Score=30.15 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=41.7
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
..+....... ..|||.-+|+|..+......+- .++|+|+++..++.+.+++..
T Consensus 214 r~i~~~s~~~-diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 214 RLIRDYSFPG-DIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHhcCCCC-CEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHh
Confidence 3444433334 4999999999998887777765 899999999999999998764
No 421
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.24 E-value=35 Score=29.69 Aligned_cols=64 Identities=11% Similarity=0.222 Sum_probs=45.1
Q ss_pred cEEEEcCCC-chhhH-HHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEe
Q 028547 50 RILIVGCGN-SAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVD 119 (207)
Q Consensus 50 ~vLdiG~G~-G~~~~-~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~ 119 (207)
+|+-+|||. |.... .+.+.+. +++.+|.+++.++.+++. ....+.+|..+.. ...-++.|.++.
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-----GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 788888876 44333 3344555 999999999988888752 5788999999852 123457786664
No 422
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=79.18 E-value=34 Score=30.30 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=58.5
Q ss_pred cEEEEcCCC-chhhHH-HHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN-SAFSEG-MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~-G~~~~~-l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l~ 124 (207)
+|+-+|||. |..... +.+.+. +++.+|.+++.++.+++. ...++.+|..+.+- ..-+..|.+++. .+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vvv~--~~ 473 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLINA--ID 473 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHHHHhcCCCcCCEEEEE--eC
Confidence 899999886 554443 344456 899999999998888663 46789999998621 234577877753 11
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+.....+-...+.+.|+-.++...
T Consensus 474 --------d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 474 --------DPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred --------CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1233333334455566765555433
No 423
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=79.03 E-value=13 Score=26.66 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=45.9
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhh-HHHHhcCCC-cEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFS-EGMVDDGYE-DVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~-~~l~~~~~~-~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~ 112 (207)
+.+.+.....+. ++|.=.|+|....+ ...+..+.. -.+.+|.++. +... .+....-..+-.++ ...
T Consensus 57 l~~~L~~~~~~g-k~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~-------K~G~~~PGt~ipI~~p~~l---~~~ 125 (160)
T PF08484_consen 57 LREFLEKLKAEG-KRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL-------KQGKYLPGTHIPIVSPEEL---KER 125 (160)
T ss_dssp HHHHHHHHHHTT---EEEE---SHHHHHHHHHT--TTTS--EEES-GG-------GTTEE-TTT--EEEEGGG-----SS
T ss_pred HHHHHHHHHHcC-CEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh-------hcCcccCCCCCeECCHHHH---hhC
Confidence 344444443444 48999999885443 333433332 3457788772 1111 12223333333333 334
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
..|.|+.. . +.....+++++...++.||.|++.
T Consensus 126 ~pd~vivl---a--------w~y~~EI~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 126 KPDYVIVL---A--------WNYKDEIIEKLREYLERGGKFIVP 158 (160)
T ss_dssp --SEEEES------------GGGHHHHHHHTHHHHHTT-EEEE-
T ss_pred CCCEEEEc---C--------hhhHHHHHHHHHHHHhcCCEEEEe
Confidence 56887743 2 256788899999999999999863
No 424
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.94 E-value=26 Score=27.98 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=53.3
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---c----cccc-cccCCCCeeEEE
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---D----VRQM-DEFQTGSFDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d----~~~~-~~~~~~~fD~v~ 118 (207)
.+||-.|+|. |..+..+++. |...+++++.+++..+.+++. .. -.++.. + ..+. .......+|+|+
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~---~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vl 239 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA---THTVNVRTEDTPESAEKIAELLGGKGPDVVI 239 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC---cEEeccccccchhHHHHHHHHhCCCCCCEEE
Confidence 4777777754 6666666665 442388888888777766543 21 011111 1 1111 012345689998
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.... ....+....+.|+++|.++...
T Consensus 240 d~~g-------------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 240 ECTG-------------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred ECCC-------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 5311 1225777889999999988654
No 425
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=78.89 E-value=4.7 Score=31.33 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=35.9
Q ss_pred CcEEEEcCCCchhhHHHHhcC------CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccc
Q 028547 49 QRILIVGCGNSAFSEGMVDDG------YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM 106 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~------~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~ 106 (207)
..++|+|||.|.++.++++.. ...++.+|-...-. .+..+.... ..+.=+..|+.++
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDL 85 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeecc
Confidence 499999999999999988853 24888999754211 222222221 2344455677665
No 426
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=78.87 E-value=13 Score=30.95 Aligned_cols=90 Identities=9% Similarity=0.087 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+++|+-+|+|. |......++....+|+++|.++.....+... ... ..+..+. -...|+|+..-
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~-----G~~--v~~leea----l~~aDVVItaT---- 258 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD-----GFR--VMTMEEA----AKIGDIFITAT---- 258 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc-----CCE--eCCHHHH----HhcCCEEEECC----
Confidence 345999999997 6665555554224899999888543333221 112 2222222 13469887531
Q ss_pred hccCCCChhhHHHHHH-HHHHhcCCCcEEEEEEeCC
Q 028547 126 LLCGSNSRQNATQMLK-EVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~-~~~~~L~pgG~~~~~~~~~ 160 (207)
.....+. .....+++|++++......
T Consensus 259 ---------G~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 ---------GNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred ---------CCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 1133343 4778899999988776543
No 427
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.87 E-value=13 Score=29.52 Aligned_cols=91 Identities=12% Similarity=0.225 Sum_probs=53.1
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC------C--------CceEEEeccccccccCCCC
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR------P--------QLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~------~--------~~~~~~~d~~~~~~~~~~~ 113 (207)
+|.-||+|. +.++..++..|+ +|+++|.+++.++.+++..... . ++.+ ..|..+. ...
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----~~~ 79 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA----VSG 79 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----hcc
Confidence 678889985 455666666777 8999999998888776532100 0 0111 1121111 235
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.|+|+..-. . .......++.++...++++.++.
T Consensus 80 aDlVi~av~-~-------~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 80 ADLVIEAVP-E-------KLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred CCEEEEecc-C-------cHHHHHHHHHHHHHhCCCCcEEE
Confidence 688886411 1 11345677888888777655443
No 428
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=78.82 E-value=21 Score=28.69 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=59.7
Q ss_pred CCcEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cc-cCCCCeeEEEeCcch
Q 028547 48 HQRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DE-FQTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~~fD~v~~~~~l 123 (207)
+.+||-.|+ |-|.++..+++.....++++--+++..+.+++.-.. .-+.+...|+.+. .. .....+|+|+..-
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd-~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v-- 219 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD-HVINYREEDFVEQVRELTGGKGVDVVLDTV-- 219 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC-EEEcCCcccHHHHHHHHcCCCCceEEEECC--
Confidence 348888885 447888888886322666776677666655554322 1122333333332 11 1334799999641
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
-...+.+..+.|+++|.++......
T Consensus 220 ------------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 ------------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ------------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 1345666889999999998876533
No 429
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=78.79 E-value=30 Score=28.56 Aligned_cols=107 Identities=11% Similarity=0.122 Sum_probs=57.6
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccc-ccc-cCCCCeeEEEeCc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQ-MDE-FQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~-~~~-~~~~~fD~v~~~~ 121 (207)
.+||-.|+|. |.++..+++. |...++.+|.+++-++.+++. .. . .+.. .+..+ ... .....+|+|+..-
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga--~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~ 262 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC--E-TVDLSKDATLPEQIEQILGEPEVDCAVDCV 262 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC--e-EEecCCcccHHHHHHHHcCCCCCcEEEECC
Confidence 3776688764 6666666664 454566778888778887763 21 1 1111 11111 111 1234689888531
Q ss_pred chhhh-ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 122 TLDSL-LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 122 ~l~~~-~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
--..- .............++...++++++|.+++....
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 263 GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 11000 000000112235788889999999999987653
No 430
>PRK07024 short chain dehydrogenase; Provisional
Probab=78.69 E-value=11 Score=28.83 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=47.0
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~v 117 (207)
+||-.|+.+| .++..+++.|+ +|+.++.+++.++...+......++.++.+|+.+.... ..+..|++
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~l 82 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVV 82 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 6777777554 44455666677 89999988877766555443323678888998874211 12457988
Q ss_pred EeCcc
Q 028547 118 VDKGT 122 (207)
Q Consensus 118 ~~~~~ 122 (207)
+.+..
T Consensus 83 v~~ag 87 (257)
T PRK07024 83 IANAG 87 (257)
T ss_pred EECCC
Confidence 87654
No 431
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=78.66 E-value=9.5 Score=29.14 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=47.4
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~v 117 (207)
+||-.|++.| .++..+++.|+ +|+.++.+++.++...+.+....++.++.+|+.+.... ..+..|++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 5777787665 34555666777 89999988877766655543324577888888764211 12568988
Q ss_pred EeCcc
Q 028547 118 VDKGT 122 (207)
Q Consensus 118 ~~~~~ 122 (207)
+.+..
T Consensus 81 i~naG 85 (259)
T PRK08340 81 VWNAG 85 (259)
T ss_pred EECCC
Confidence 87643
No 432
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=78.45 E-value=24 Score=28.65 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=53.1
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe--cccc-ccccCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVRQ-MDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~--d~~~-~~~~~~~~fD~v~~~~~l 123 (207)
.+||-.|+|. |..+..+++. |...+++++.+++..+.+++ +....-+..... +..+ ......+.+|+|+...
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~-- 261 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVI-- 261 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCCeecccccccchHHHHHHHHhCCCCcEEEECC--
Confidence 4777787754 5555555554 44458888888887777754 321111111111 1111 1011135689888531
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcC-CCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLK-DKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~~~~~~ 157 (207)
. ....+....+.|+ ++|.++...
T Consensus 262 g-----------~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 262 G-----------SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred C-----------CHHHHHHHHHHhccCCCEEEEEe
Confidence 0 1345677788899 999988764
No 433
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=78.08 E-value=13 Score=29.63 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=54.5
Q ss_pred CcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-cc-ccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MD-EFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~fD~v~~~~~l~~ 125 (207)
.+||..|+|. |..+..+++....+++++..+++..+.+++.-.. .-+.....++.+ +. ......+|+++....
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g--- 236 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD-DTINVGDEDVAARLRELTDGEGADVVIDATG--- 236 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC-EEecCcccCHHHHHHHHhCCCCCCEEEECCC---
Confidence 4888888764 6666666665323888888888877777543211 000111111111 10 113356899985410
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-...+..+.+.|+++|.++...
T Consensus 237 ----------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 ----------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ----------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1235677889999999988654
No 434
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=78.05 E-value=17 Score=29.75 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=52.1
Q ss_pred CCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHH-HHHHHHHccCCCCceEEE-eccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVV-IEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~-i~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
.+.+||-.|+|. |..+..+++....++++++.+++. .+.+++ +.. -.++. .+........ ..+|+|+...
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-lGa---~~~i~~~~~~~v~~~~-~~~D~vid~~-- 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-LGA---DSFLVTTDSQKMKEAV-GTMDFIIDTV-- 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-CCC---cEEEcCcCHHHHHHhh-CCCcEEEECC--
Confidence 334888888864 666666666533378888877544 344432 221 11111 1111111111 2588888531
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....+....+.++++|.++....
T Consensus 251 -----------G~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 -----------SAEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -----------CcHHHHHHHHHhhcCCCEEEEEcc
Confidence 112356777889999999987653
No 435
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=77.71 E-value=12 Score=31.37 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=52.5
Q ss_pred CCCcEEEEcCCC-chhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 47 HHQRILIVGCGN-SAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+++|+-+|+|. |......++ .|. +|+.+|.++.....+... ... ..++.+. ....|+|+..-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~-----G~~--v~~l~ea----l~~aDVVI~aT--- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMD-----GFR--VMTMEEA----AELGDIFVTAT--- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhc-----CCE--ecCHHHH----HhCCCEEEECC---
Confidence 345999999986 544444444 345 899999988654333221 112 1233222 13579998631
Q ss_pred hhccCCCChhhHHHHHH-HHHHhcCCCcEEEEEEeCC
Q 028547 125 SLLCGSNSRQNATQMLK-EVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~-~~~~~L~pgG~~~~~~~~~ 160 (207)
.....+. .....+|+|++++......
T Consensus 276 ----------G~~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 ----------GNKDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred ----------CCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 1123444 5778899999888766433
No 436
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=77.22 E-value=32 Score=27.92 Aligned_cols=94 Identities=17% Similarity=0.306 Sum_probs=54.7
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-----ccc-ccccCCCCeeEEEe
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~v~~ 119 (207)
+.+||-.|+|. |.++..+++. |..++++++.+++.++.+++ +.. ..++... +.+ ......+.+|+++.
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~-~Ga---~~~i~~~~~~~~~~~~v~~~~~~~~d~vid 263 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK-FGV---TEFVNPKDHDKPVQEVIAEMTGGGVDYSFE 263 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC---ceEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 34888888753 5566666665 33479999999988888755 321 1122111 111 11112336888885
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.- .....+....+.++++ |.+++...
T Consensus 264 ~~-------------G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 264 CT-------------GNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CC-------------CChHHHHHHHHHhhcCCCEEEEECc
Confidence 31 1133566678888996 98887654
No 437
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=77.11 E-value=20 Score=28.18 Aligned_cols=92 Identities=15% Similarity=0.249 Sum_probs=55.2
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------CCCC-----------ceEEEecccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NRPQ-----------LKYIKMDVRQMDEF 109 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-------~~~~-----------~~~~~~d~~~~~~~ 109 (207)
+|--||+|. ..++..++..|. +|+++|.+++.++.+++++. .... ......+...
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 80 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE---- 80 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH----
Confidence 678888885 355566666676 99999999988876554321 0000 0111112111
Q ss_pred CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
-..-|+|+.. +. .+......++.++.+.++++.++..
T Consensus 81 -~~~aD~Viea-v~-------e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 81 -LRDADFIIEA-IV-------ESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred -hCCCCEEEEc-Cc-------cCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1346888864 11 2235667788888888888876653
No 438
>PRK06484 short chain dehydrogenase; Validated
Probab=76.75 E-value=44 Score=28.52 Aligned_cols=107 Identities=13% Similarity=0.220 Sum_probs=61.5
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++.+|-.|++.| .++..+++.|+ +|+.++.+++.++...+... .....+..|+.+.... .-+..|
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 345 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQARWGRLD 345 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 347777777665 44556666777 89999988877766655442 2455677888764211 125689
Q ss_pred EEEeCcchhh-hc-cCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDS-LL-CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~-~~-~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+++.+..... .. ....+.++ .-.+.+.+...++.+|.++++.
T Consensus 346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 346 VLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred EEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 8887643321 10 01111122 2223455556666778877655
No 439
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.54 E-value=11 Score=28.50 Aligned_cols=73 Identities=14% Similarity=0.325 Sum_probs=44.7
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|++.| .+...+++.|. .++.++.++..++.+.+.... ..++.++..|+.+.... ..+..|
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 84 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLN 84 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 37888887443 23334555666 899999888766655544432 24567788887663111 114679
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
.|+.+..
T Consensus 85 ~vi~~ag 91 (253)
T PRK08217 85 GLINNAG 91 (253)
T ss_pred EEEECCC
Confidence 8887643
No 440
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=76.43 E-value=25 Score=27.99 Aligned_cols=92 Identities=16% Similarity=0.284 Sum_probs=53.0
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec---cccccc-cCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQMDE-FQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d---~~~~~~-~~~~~fD~v~~~~~ 122 (207)
.+||-.|+|. |..+..+++. |...+++++.++...+.+++. .. ..++... ..++.. .....+|+++...
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~d~vld~~- 235 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GA---DDTINPKEEDVEKVRELTEGRGADLVIEAA- 235 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC---CEEecCccccHHHHHHHhCCCCCCEEEECC-
Confidence 4788888755 6666666665 342388988888777766432 11 1111111 111111 1234589998531
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+..+.+.|+++|.++...
T Consensus 236 ------------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 ------------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ------------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 11335677889999999988764
No 441
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=76.15 E-value=8.6 Score=30.49 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=43.4
Q ss_pred cCCCchhhHHHHhc----CCCcEEEEeCCHHHHHHHHHHcc---CCCCceEE----Eecccccc----ccCCCCeeEEEe
Q 028547 55 GCGNSAFSEGMVDD----GYEDVVNVDISSVVIEAMMKKYS---NRPQLKYI----KMDVRQMD----EFQTGSFDSVVD 119 (207)
Q Consensus 55 G~G~G~~~~~l~~~----~~~~v~~~D~s~~~i~~~~~~~~---~~~~~~~~----~~d~~~~~----~~~~~~fD~v~~ 119 (207)
-.|+|.++..++++ ++++++.+|.++..+...++.+. ...++++. .+|+.+.. -+.....|+|+-
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 35677777766664 55799999999999999888874 22356554 67887741 235568999998
Q ss_pred Ccchhhhc
Q 028547 120 KGTLDSLL 127 (207)
Q Consensus 120 ~~~l~~~~ 127 (207)
...+-|+.
T Consensus 84 aAA~KhVp 91 (293)
T PF02719_consen 84 AAALKHVP 91 (293)
T ss_dssp ------HH
T ss_pred ChhcCCCC
Confidence 88887764
No 442
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=75.84 E-value=24 Score=28.32 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=54.3
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccc-cccc-CCCCeeEEEeC
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQ-MDEF-QTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~-~~~~-~~~~fD~v~~~ 120 (207)
+.+||-.|+|. |..+..+++. |...+++++.+++..+.+++. .. . .++. .++.+ .... ....+|+|+..
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga--~-~~i~~~~~~~~~~l~~~~~~~~~d~vid~ 248 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA--T-IVLDPTEVDVVAEVRKLTGGGGVDVSFDC 248 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC--C-EEECCCccCHHHHHHHHhCCCCCCEEEEC
Confidence 34788787643 5555555555 344788999888887777553 21 1 1111 11111 1011 23458999853
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.. ....++.+.+.|+++|.++....
T Consensus 249 ~g-------------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 249 AG-------------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CC-------------CHHHHHHHHHhccCCCEEEEEcc
Confidence 11 12356778889999999887654
No 443
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=75.83 E-value=12 Score=25.72 Aligned_cols=72 Identities=17% Similarity=0.342 Sum_probs=44.2
Q ss_pred CCcEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
.++||-+|+|. | .....+...|+++++.+.-+.+-.+...+.+.. .++.+. ++.+.. -....+|+|+..-..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~-~~~~~~--~~~~~~-~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG-VNIEAI--PLEDLE-EALQEADIVINATPS 85 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG-CSEEEE--EGGGHC-HHHHTESEEEE-SST
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc-ccccee--eHHHHH-HHHhhCCeEEEecCC
Confidence 34999999975 2 344556667777899999988766666555521 233444 333431 123579999975433
No 444
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=75.83 E-value=25 Score=27.98 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=53.1
Q ss_pred CcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~~~~~l 123 (207)
.+||-.|+|. |..+..+++....+++.++.+++..+.+++ +.. -.++.. +..+ .. ....+|+++...
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~---~~~i~~~~~~~~~~~~--~~~~~d~vi~~~-- 236 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGA---HHYIDTSKEDVAEALQ--ELGGAKLILATA-- 236 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCC---cEEecCCCccHHHHHH--hcCCCCEEEECC--
Confidence 4888888653 555556666532379999988887777754 321 111111 1111 11 113578888521
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+....+.|+++|.++...
T Consensus 237 -----------g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 237 -----------PNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred -----------CchHHHHHHHHHcccCCEEEEEe
Confidence 01335777888999999988765
No 445
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=75.42 E-value=24 Score=26.80 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=45.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++||-.|+++| .+...+++.|. +++.++.+....+........ ..++.++..|+.+.... ..+.+|
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~d 90 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKVD 90 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 48899997665 33445566676 788888777666554443321 13567788888875211 124678
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
.++.+..
T Consensus 91 ~li~~ag 97 (255)
T PRK06113 91 ILVNNAG 97 (255)
T ss_pred EEEECCC
Confidence 8887644
No 446
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.38 E-value=22 Score=27.01 Aligned_cols=73 Identities=19% Similarity=0.363 Sum_probs=44.4
Q ss_pred CCcEEEEcCCCchhhHHHH----hcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc----------ccCCCC
Q 028547 48 HQRILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----------EFQTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~----~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~~ 113 (207)
++.||-.||..|..+-.++ +.|+ .|++.--+-+-.......+ .+.....|+.+.. .+++++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~----gl~~~kLDV~~~~~V~~v~~evr~~~~Gk 81 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQF----GLKPYKLDVSKPEEVVTVSGEVRANPDGK 81 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhh----CCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence 3489999999986655554 4567 8888754443333332222 4566666666531 236788
Q ss_pred eeEEEeCcchhh
Q 028547 114 FDSVVDKGTLDS 125 (207)
Q Consensus 114 fD~v~~~~~l~~ 125 (207)
.|+.+-+.-..+
T Consensus 82 ld~L~NNAG~~C 93 (289)
T KOG1209|consen 82 LDLLYNNAGQSC 93 (289)
T ss_pred eEEEEcCCCCCc
Confidence 888887644433
No 447
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=75.28 E-value=40 Score=27.33 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=54.2
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~~~~~ 122 (207)
.+||-.|+|. |..+..+++. |...+++++.++...+.+++. .. ..++.. +..+ ........+|+|+..-.
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~---~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g 263 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GA---THVINPKEEDLVAAIREITGGGVDYALDTTG 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC---cEEecCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence 4788888754 6666666664 444699999998877766542 11 111111 1111 11111346898885310
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....+..+.+.|+++|.++...
T Consensus 264 -------------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 264 -------------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred -------------CcHHHHHHHHHhccCCEEEEeC
Confidence 1235677889999999988654
No 448
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=75.27 E-value=33 Score=28.34 Aligned_cols=95 Identities=14% Similarity=-0.007 Sum_probs=56.5
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|+-++-..|.+++.++..+.. ...|. --.-...+.++... +.-.+...+.... ..+.+|+|+..-+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~~~~~~---~~~~~d~vl~~~P----- 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SIGDS-YISELATRENLRLNGIDESSVKFLDSTAD---YPQQPGVVLIKVP----- 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--eeehH-HHHHHHHHHHHHHcCCCcccceeeccccc---ccCCCCEEEEEeC-----
Confidence 8999999999999999975442 22342 11222223333321 1001222232322 2355899986422
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.........+..+.+.|.||+.++...-
T Consensus 116 ---K~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 116 ---KTLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred ---CCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 2346778889999999999999876543
No 449
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.12 E-value=14 Score=28.13 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=48.0
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEecccccccc---------CCCC
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++.++...+.+.. ..++.++.+|+.+.... ..+.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 86 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGP 86 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 47888887665 34455666777 899999888777666555432 24577888888775211 1246
Q ss_pred eeEEEeCcc
Q 028547 114 FDSVVDKGT 122 (207)
Q Consensus 114 fD~v~~~~~ 122 (207)
.|.++.+..
T Consensus 87 id~li~~ag 95 (260)
T PRK07063 87 LDVLVNNAG 95 (260)
T ss_pred CcEEEECCC
Confidence 888887643
No 450
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=74.92 E-value=25 Score=31.85 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=65.4
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-------------------CCceEEEecccccc
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-------------------PQLKYIKMDVRQMD 107 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-------------------~~~~~~~~d~~~~~ 107 (207)
++|--||+|+ +.++..++..|+ .|+.+|.+++.++.+.++.... .++++. .|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3788999986 355556667777 9999999999988876544310 012211 12211
Q ss_pred ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 108 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
-...|+|+-. +.+.+ +-...++.++.++++|+.++.-.|.+-+
T Consensus 412 ---~~~aDlViEA-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~ 454 (737)
T TIGR02441 412 ---FKNADMVIEA-VFEDL-------SLKHKVIKEVEAVVPPHCIIASNTSALP 454 (737)
T ss_pred ---hccCCeehhh-ccccH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 2356888754 34444 7788999999999999988877664433
No 451
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=74.81 E-value=30 Score=31.26 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=65.8
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-------C------------CCceEEEecccccc
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------R------------PQLKYIKMDVRQMD 107 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-------~------------~~~~~~~~d~~~~~ 107 (207)
++|--||+|+ +.++..++..|+ .|+.+|.+++.++.+.++... . .++++. .|..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~--- 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYA--- 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH---
Confidence 3788999986 355566677788 999999999998876654321 0 012111 1111
Q ss_pred ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 108 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.-...|+|+-. +.+.+ +-...++.++.++++|+.+|.-.|.+-+
T Consensus 389 --~~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasnTS~l~ 432 (714)
T TIGR02437 389 --GFDNVDIVVEA-VVENP-------KVKAAVLAEVEQHVREDAILASNTSTIS 432 (714)
T ss_pred --HhcCCCEEEEc-CcccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 12457888865 44444 7788999999999999988876664433
No 452
>PRK06500 short chain dehydrogenase; Provisional
Probab=74.39 E-value=34 Score=25.66 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=43.1
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~v 117 (207)
+||-.|++.| .++..+++.|+ ++++++.+++.++...+... .++.++.+|+.+.... ..+..|.+
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 84 (249)
T PRK06500 8 TALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALAEAFGRLDAV 84 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 6777776554 34445566677 89999888766655554442 2466777787664211 12467988
Q ss_pred EeCcc
Q 028547 118 VDKGT 122 (207)
Q Consensus 118 ~~~~~ 122 (207)
+.+..
T Consensus 85 i~~ag 89 (249)
T PRK06500 85 FINAG 89 (249)
T ss_pred EECCC
Confidence 86543
No 453
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.14 E-value=21 Score=29.93 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=44.3
Q ss_pred CcEEEEcCCC-ch-hhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEe
Q 028547 49 QRILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVD 119 (207)
Q Consensus 49 ~~vLdiG~G~-G~-~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~ 119 (207)
++|+-+|+|. |. ++..+.+.+. +++.+|.+++.++.+++.. .++.++.+|..+... ..-..+|.|++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL---PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC---CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 4899998864 22 2233333455 8999999999888877654 246778888876421 23456787775
No 454
>PRK08507 prephenate dehydrogenase; Validated
Probab=73.74 E-value=25 Score=27.35 Aligned_cols=84 Identities=13% Similarity=0.262 Sum_probs=49.6
Q ss_pred cEEEEcCCC--chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+|.-+|+|. |.++..+.+.|+ .+++++|.+++..+.+++. . .+.. ..+..+. . ..|+|+..-..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g---~~~~-~~~~~~~---~--~aD~Vilavp~--- 68 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-G---LVDE-IVSFEEL---K--KCDVIFLAIPV--- 68 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-C---CCcc-cCCHHHH---h--cCCEEEEeCcH---
Confidence 466788775 456666666664 3799999999877776532 1 1111 1122221 2 27988864322
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
......++++.. ++++.+++
T Consensus 69 -------~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 69 -------DAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred -------HHHHHHHHHHhc-cCCCCEEE
Confidence 445667777877 77776444
No 455
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=73.73 E-value=43 Score=26.54 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=52.8
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---C------CceEEEeccccccccCCCCeeEEE
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---P------QLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~------~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+|.-+|+|. +.++..+++.+. +|+.+|.++..++..++..... . ++.. ..+..+ .....|+|+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~D~vi 76 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE----ALADADLIL 76 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH----HHhCCCEEE
Confidence 577788875 345555566666 8999999988777666542110 0 1111 111111 123568888
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
..-. .......++.+...++++.+++..
T Consensus 77 ~~v~----------~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 77 VAVP----------SQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred EeCC----------HHHHHHHHHHHHhhcCCCCEEEEE
Confidence 5421 135577778888888887665544
No 456
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=73.72 E-value=33 Score=27.22 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=51.9
Q ss_pred CCcEEEEcCCC-chhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+++|+-+|+|. |......++ .|. +|+.+|.++...+.++.. ...+.. ..++. ..-..+|+|+..-+.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~-----G~~~~~--~~~l~-~~l~~aDiVI~t~p~-- 220 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEM-----GLSPFH--LSELA-EEVGKIDIIFNTIPA-- 220 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----CCeeec--HHHHH-HHhCCCCEEEECCCh--
Confidence 45999999975 433333333 455 999999998766555432 122221 11221 112468999974211
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
..+-+.+.+.++|+++++-..+.+
T Consensus 221 -----------~~i~~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 221 -----------LVLTKEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred -----------hhhhHHHHHcCCCCcEEEEEccCC
Confidence 112355667889988776555433
No 457
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=73.59 E-value=18 Score=28.85 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=52.7
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccc-ccc-cCCCCeeEEEeCc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQ-MDE-FQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~-~~~-~~~~~fD~v~~~~ 121 (207)
.+||..|+|. |..+..+++. |...+++++.++...+.+++.- . ..++. .++.+ ... .....+|+++...
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~---~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A---TDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C---cEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 4777777653 6666666665 3237888888777766665431 1 11111 11111 100 1335789888531
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ....+....+.|+++|.++...
T Consensus 245 g-------------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 245 G-------------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 0236777889999999987654
No 458
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.56 E-value=27 Score=28.19 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=59.4
Q ss_pred CCCcEEEEcC-CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEE-Eeccccc-cccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGC-GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYI-KMDVRQM-DEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~-G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~-~~d~~~~-~~~~~~~fD~v~~~~~l 123 (207)
++++|--+|. |-|+++..+++.-..+|+++|-+...-+.+-+.+....-+.+. ..|..+. ...-+.-.|-|...
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--- 257 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--- 257 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec---
Confidence 4446666665 4699999998874349999999986667776666432111111 1222221 11122334444421
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
....++.+..+||++|.++++.....
T Consensus 258 ------------a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 258 ------------AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred ------------cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 23346777899999999998875443
No 459
>PLN02494 adenosylhomocysteinase
Probab=73.28 E-value=34 Score=29.20 Aligned_cols=88 Identities=13% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+++|+-+|+|. |......++. |. +|+++|.++.....+... ...+ .++.+. -...|+|+...-
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~-----G~~v--v~leEa----l~~ADVVI~tTG--- 318 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALME-----GYQV--LTLEDV----VSEADIFVTTTG--- 318 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhc-----CCee--ccHHHH----HhhCCEEEECCC---
Confidence 45999999986 6555554443 45 899999988543333221 1111 123222 124698886311
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
....+.....+.+++||+++.+...
T Consensus 319 ---------t~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 319 ---------NKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ---------CccchHHHHHhcCCCCCEEEEcCCC
Confidence 1122346778899999999987753
No 460
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=73.23 E-value=43 Score=26.31 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=52.5
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+||-.|+|. |..+..+++. |. ++++++.+++..+.+++ +.. .. ..+.... .....+|+++...
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~-~g~----~~-~~~~~~~--~~~~~~d~vid~~----- 222 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR-LGV----ET-VLPDEAE--SEGGGFDVVVEAT----- 222 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH-cCC----cE-EeCcccc--ccCCCCCEEEECC-----
Confidence 4888887643 4444444544 45 78999988888888876 321 11 1111111 2345699998531
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.-...++...+.|+++|.++...
T Consensus 223 --------g~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 --------GSPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred --------CChHHHHHHHHHhhcCCEEEEEc
Confidence 11335677788899999998743
No 461
>PRK08339 short chain dehydrogenase; Provisional
Probab=73.05 E-value=17 Score=27.91 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=47.9
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccccc--------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF--------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~--------~~~~fD 115 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++.++...+.+.. ..++.++.+|+.+.... ..+..|
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD 87 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPD 87 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCc
Confidence 37788887765 45556677777 899999888776665554432 23677888888875211 124678
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
+++.+..
T Consensus 88 ~lv~nag 94 (263)
T PRK08339 88 IFFFSTG 94 (263)
T ss_pred EEEECCC
Confidence 8876643
No 462
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.85 E-value=35 Score=30.80 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=65.2
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--------C-----------CCceEEEecccccc
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--------R-----------PQLKYIKMDVRQMD 107 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--------~-----------~~~~~~~~d~~~~~ 107 (207)
++|.-||+|+ ..++..++..|+ +|+.+|.+++.++.+..+... . .++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 3789999997 355566677787 999999999988876554321 0 122221 12211
Q ss_pred ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 108 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
-...|+|+-. +.+-+ +-...++.++.++++|+.++.-.|.+-+
T Consensus 390 ---~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~ 432 (715)
T PRK11730 390 ---FERVDVVVEA-VVENP-------KVKAAVLAEVEQKVREDTILASNTSTIS 432 (715)
T ss_pred ---hcCCCEEEec-ccCcH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 2457888854 34434 7788999999999999988876554433
No 463
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.79 E-value=40 Score=30.43 Aligned_cols=98 Identities=20% Similarity=0.215 Sum_probs=64.7
Q ss_pred CcEEEEcCCC-c-hhhHHHH-hcCCCcEEEEeCCHHHHHHHHHHccC-------C------------CCceEEEeccccc
Q 028547 49 QRILIVGCGN-S-AFSEGMV-DDGYEDVVNVDISSVVIEAMMKKYSN-------R------------PQLKYIKMDVRQM 106 (207)
Q Consensus 49 ~~vLdiG~G~-G-~~~~~l~-~~~~~~v~~~D~s~~~i~~~~~~~~~-------~------------~~~~~~~~d~~~~ 106 (207)
++|.-||+|+ | .++..++ ..|+ +|+.+|.+++.++.+..++.. . .++++. .|..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~-- 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR-- 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH--
Confidence 4789999987 3 4555556 5577 999999999988877554321 0 122222 1211
Q ss_pred cccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 107 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.-...|+|+-. +.+.+ +-...++.++.+.++|+.+|.-.+.+-+
T Consensus 386 ---~~~~aDlViEa-v~E~~-------~~K~~v~~~le~~~~~~~ilasnTS~l~ 429 (708)
T PRK11154 386 ---GFKHADVVIEA-VFEDL-------ALKQQMVAEVEQNCAPHTIFASNTSSLP 429 (708)
T ss_pred ---HhccCCEEeec-ccccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 12457888864 34434 7788999999999999988876664433
No 464
>PLN02253 xanthoxin dehydrogenase
Probab=72.56 E-value=21 Score=27.58 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=45.6
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++..+...+......++.++.+|+.+.... .-+..|.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~ 97 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDI 97 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCCE
Confidence 36777776543 33445556677 89999988766655544443324678888998875211 1146798
Q ss_pred EEeCcc
Q 028547 117 VVDKGT 122 (207)
Q Consensus 117 v~~~~~ 122 (207)
++.+..
T Consensus 98 li~~Ag 103 (280)
T PLN02253 98 MVNNAG 103 (280)
T ss_pred EEECCC
Confidence 887643
No 465
>PRK07985 oxidoreductase; Provisional
Probab=72.10 E-value=46 Score=26.11 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=56.2
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCC--HHHHHHHHHHccC-CCCceEEEecccccccc---------CCCC
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDIS--SVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s--~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+ .+..+...+.... ..++.++.+|+.+.... .-+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 128 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALGG 128 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 47888887654 45556666777 78777643 2233333322221 13567788888774211 1246
Q ss_pred eeEEEeCcchhhh-c-cCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSL-L-CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~-~-~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|.++.+...... . ....+.++ .-.+++.+.+.++.+|.+++++
T Consensus 129 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 129 LDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred CCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 7888765432110 0 00111122 2234555566667778776654
No 466
>PRK08263 short chain dehydrogenase; Provisional
Probab=72.03 E-value=43 Score=25.78 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=42.6
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~v 117 (207)
+||-.|+..| .++..+++.|. +|++++.+++.+....+... ..+.++.+|+.+.... ..+.+|.|
T Consensus 5 ~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 81 (275)
T PRK08263 5 VWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYG--DRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV 81 (275)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcc--CCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 6777776443 33344455666 89999988877665554432 2466778888764211 12467888
Q ss_pred EeCcc
Q 028547 118 VDKGT 122 (207)
Q Consensus 118 ~~~~~ 122 (207)
+.+..
T Consensus 82 i~~ag 86 (275)
T PRK08263 82 VNNAG 86 (275)
T ss_pred EECCC
Confidence 86643
No 467
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=72.01 E-value=12 Score=26.55 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=47.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---CCCCeeEEEeC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDK 120 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~v~~~ 120 (207)
...+ .|||+|-|+|+.--++.+..+ ..++.+|-.-..-..+. -+.-.++.+|+.+..+. -..+.-++.+.
T Consensus 27 ~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~-----P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD 100 (160)
T PF12692_consen 27 GLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST-----PPEEDLILGDIRETLPALARFGAGAALAHAD 100 (160)
T ss_dssp T--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG--------GGGEEES-HHHHHHHHHHH-S-EEEEEE-
T ss_pred CCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC-----CchHheeeccHHHHhHHHHhcCCceEEEEee
Confidence 3444 999999999999888888754 59999996432111100 03457888998885332 12233333332
Q ss_pred cchhhhccCCCCh--hhHHHHHHHHHHhcCCCcEEEE
Q 028547 121 GTLDSLLCGSNSR--QNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 121 ~~l~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.- ++.... ....-+-.-+..+|+|||+++-
T Consensus 101 ~G-----~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 101 IG-----TGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp --------S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cC-----CCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 11 111000 1122222334678899998863
No 468
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.94 E-value=19 Score=27.04 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=45.9
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~v 117 (207)
+||-.|+..| .++..+++.|+ +|++++-++...+..........++.++.+|+.+.... ..+.+|.|
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 85 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDIL 85 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 7787876543 34455566677 79999998876665554443223577888888875211 12367988
Q ss_pred EeCcc
Q 028547 118 VDKGT 122 (207)
Q Consensus 118 ~~~~~ 122 (207)
+....
T Consensus 86 i~~ag 90 (251)
T PRK07231 86 VNNAG 90 (251)
T ss_pred EECCC
Confidence 87643
No 469
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=71.93 E-value=51 Score=26.55 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=53.4
Q ss_pred CCCcEEEEcCCC-chhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEec---cc----cccc-cCCCCeeE
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VR----QMDE-FQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d---~~----~~~~-~~~~~fD~ 116 (207)
.+.+||-.|+|. |..+..+++.. .+++++++.+++..+.+++ +.- ..++..+ .. .... .....+|+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~---~~vi~~~~~~~~~~~~~i~~~~~~~~~d~ 252 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-FGA---DATIDIDELPDPQRRAIVRDITGGRGADV 252 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC---CeEEcCcccccHHHHHHHHHHhCCCCCcE
Confidence 334788787653 55556666653 3489999988877766653 221 0111111 00 1100 12346899
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+... .....+....+.|+++|.++...
T Consensus 253 vid~~-------------g~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 253 VIEAS-------------GHPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EEECC-------------CChHHHHHHHHHhccCCEEEEEc
Confidence 98531 01234667789999999998654
No 470
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=71.91 E-value=5 Score=32.02 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 134 QNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 134 ~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
..+..+|+.+.++|+|||.+.+++|..-..
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLED 246 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLED 246 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 468889999999999999999999866543
No 471
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=71.66 E-value=20 Score=27.23 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCe
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+++||-.|++.| .++..+++.|+ +|+.++-+++.++...+.+.. ..++.++.+|+.+.... .-+..
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 89 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL 89 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 347888887554 34445566677 899999887766555444332 23577888888774211 12457
Q ss_pred eEEEeCcc
Q 028547 115 DSVVDKGT 122 (207)
Q Consensus 115 D~v~~~~~ 122 (207)
|.++.+..
T Consensus 90 d~vi~~ag 97 (256)
T PRK06124 90 DILVNNVG 97 (256)
T ss_pred CEEEECCC
Confidence 88886643
No 472
>PRK05867 short chain dehydrogenase; Provisional
Probab=71.17 E-value=17 Score=27.58 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=48.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++.++...+.+... .++.++.+|+.+.... ..+..|
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 88 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGID 88 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 48888888665 44556666777 8999998887766665544321 3567778888764211 124689
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
.++.+...
T Consensus 89 ~lv~~ag~ 96 (253)
T PRK05867 89 IAVCNAGI 96 (253)
T ss_pred EEEECCCC
Confidence 88876443
No 473
>PRK08655 prephenate dehydrogenase; Provisional
Probab=70.96 E-value=42 Score=28.30 Aligned_cols=87 Identities=20% Similarity=0.292 Sum_probs=48.6
Q ss_pred cEEEEc-CCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVG-CGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG-~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+|.-+| +|. | .++..+.+.|. +|+++|.+++......... .+.+ ..+..+. ....|+|+..-+..
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~----gv~~-~~~~~e~----~~~aDvVIlavp~~-- 69 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKEL----GVEY-ANDNIDA----AKDADIVIISVPIN-- 69 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHc----CCee-ccCHHHH----hccCCEEEEecCHH--
Confidence 567776 553 3 44455555566 8999998876643322221 1221 1122221 23469888653333
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.....++++...++++.+++-+
T Consensus 70 --------~~~~vl~~l~~~l~~~~iViDv 91 (437)
T PRK08655 70 --------VTEDVIKEVAPHVKEGSLLMDV 91 (437)
T ss_pred --------HHHHHHHHHHhhCCCCCEEEEc
Confidence 3467778888888887755433
No 474
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=70.93 E-value=5.4 Score=31.68 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 134 QNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 134 ~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
..+..+|..+.++|+|||.+.+++|..-..
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlED 242 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLED 242 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence 468889999999999999999999866543
No 475
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=70.81 E-value=56 Score=27.21 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=54.1
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---------------CCCceEEEeccccccccCCC
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---------------RPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---------------~~~~~~~~~d~~~~~~~~~~ 112 (207)
+|--+|+|. | .++..+++.|+ +|+++|.+++.++..++.... ..++.+ ..+..+. -.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~-~~~~~~~----~~ 75 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA-TTDYEDA----IR 75 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE-ECCHHHH----Hh
Confidence 456678875 3 45556666777 999999999887765532100 001111 1111111 13
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..|+|+..-.-..-..+..+.......++.+.+.+++|.+++..+
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 468777531111000011112346677788888888877666544
No 476
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.75 E-value=25 Score=26.70 Aligned_cols=74 Identities=9% Similarity=0.289 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCC
Q 028547 47 HHQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 47 ~~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
.+++||-.|++.| .++..+++.|+ +++.++.+. ..+.+.+.... ..++.++.+|+.+.... .-+.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 91 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK 91 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3448888888765 44455666777 788877663 23333332221 13577888888875211 1236
Q ss_pred eeEEEeCcc
Q 028547 114 FDSVVDKGT 122 (207)
Q Consensus 114 fD~v~~~~~ 122 (207)
.|.++.+..
T Consensus 92 id~li~~ag 100 (258)
T PRK06935 92 IDILVNNAG 100 (258)
T ss_pred CCEEEECCC
Confidence 798887543
No 477
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=70.67 E-value=22 Score=30.91 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=55.5
Q ss_pred cEEEEcCCCchhhHHHHh----cCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccc----ccCCCCeeEEE
Q 028547 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD----EFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~----~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~----~~~~~~fD~v~ 118 (207)
+|| +-.|+|+++..+++ .+++++..+|.++..+......+... ..+.+..+|+.+.. .+..-+.|+|+
T Consensus 252 ~vL-VTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 252 TVL-VTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred EEE-EeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEE
Confidence 444 55566766666655 46689999999998877777665542 57889999999852 23556789999
Q ss_pred eCcchhhhc
Q 028547 119 DKGTLDSLL 127 (207)
Q Consensus 119 ~~~~l~~~~ 127 (207)
-...+-|+.
T Consensus 331 HAAA~KHVP 339 (588)
T COG1086 331 HAAALKHVP 339 (588)
T ss_pred EhhhhccCc
Confidence 888887764
No 478
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=70.61 E-value=15 Score=28.36 Aligned_cols=98 Identities=14% Similarity=0.173 Sum_probs=58.5
Q ss_pred EEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cccCCCCeeEEEeCcchhhhc
Q 028547 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 52 LdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+..=.|+-.++..+.... .+.+.+|+-+...+..++++....++++...|..+. .| +...=-+|++..++..-
T Consensus 62 l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~allP-P~~rRglVLIDPpYE~~- 138 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQ-DRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKALLP-PPERRGLVLIDPPYEQK- 138 (245)
T ss_dssp --EEE-HHHHHHHHS-TT-SEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH-S--TTS-EEEEE-----ST-
T ss_pred cCcCCCCHHHHHHhCCcc-ceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhhCC-CCCCCeEEEECCCCCCc-
Confidence 555567777777777653 599999999999999988887767899999998873 22 34456788888777643
Q ss_pred cCCCChhhHHHHHHHHHHhcC--CCcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLK--DKGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~--pgG~~~~~~~ 158 (207)
.+...+.+.+.+.++ +.|++++-..
T Consensus 139 ------~dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 139 ------DDYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp ------THHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ------hHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 566777777766665 5788777654
No 479
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.37 E-value=49 Score=26.30 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=50.3
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc---cC-CCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY---SN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~---~~-~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.+|+-+|+|. |.++..+++.|. +|+.+.-++. +...++- .. ..+..+....+... +-....+|+|+..--
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~vilavK 81 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRS-AEDMPPCDWVLVGLK 81 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcc-hhhcCCCCEEEEEec
Confidence 3899999985 456666677676 8887776552 2222211 00 01111111111111 012357898885311
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
- .....+++.+...+++++.++..
T Consensus 82 ~----------~~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 82 T----------TANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred C----------CChHhHHHHHhhhcCCCCEEEEe
Confidence 1 23456777888889998876654
No 480
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.27 E-value=56 Score=27.35 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=41.5
Q ss_pred cEEEEcCCCchhhHHHHh----cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEeC
Q 028547 50 RILIVGCGNSAFSEGMVD----DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDK 120 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~----~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~~ 120 (207)
+|+-+|+| ..+..+++ .+. +|+.+|.+++.++.+++.. .+.++.+|..+.. ......+|.|++.
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~----~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRL----DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhc----CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 57777775 44444443 455 9999999998877766532 4677778877641 1234578888753
No 481
>PRK07035 short chain dehydrogenase; Provisional
Probab=70.25 E-value=18 Score=27.36 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=46.9
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++||-.|++.| .+...+++.|+ +|++++.++...+...+.+... .++.++..|+.+.... .-++.|
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 87 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRLD 87 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 37888888766 44556666777 8999998877666555544322 3567778888764211 123589
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
+++.+..
T Consensus 88 ~li~~ag 94 (252)
T PRK07035 88 ILVNNAA 94 (252)
T ss_pred EEEECCC
Confidence 8886543
No 482
>PRK07102 short chain dehydrogenase; Provisional
Probab=69.38 E-value=17 Score=27.36 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=43.4
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--CCCCceEEEecccccccc------CCCCeeEEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF------QTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~------~~~~fD~v~ 118 (207)
+|+-.|+..| .++..+++.|+ +|++++.+++..+...+... ...++.++.+|+.+.... -...+|.++
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 6777776543 33445555676 89999988866554433322 124688889998875221 112468888
Q ss_pred eCc
Q 028547 119 DKG 121 (207)
Q Consensus 119 ~~~ 121 (207)
.+.
T Consensus 82 ~~a 84 (243)
T PRK07102 82 IAV 84 (243)
T ss_pred ECC
Confidence 653
No 483
>PRK07454 short chain dehydrogenase; Provisional
Probab=69.36 E-value=22 Score=26.64 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=45.1
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|+..| .++..+++.|. +|++++.+++..+...+.... ..++.++.+|+.+.... .-++.|
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPD 85 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 37788875433 23445555677 899999888766555443332 14677888998875211 013579
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
.++.+..
T Consensus 86 ~lv~~ag 92 (241)
T PRK07454 86 VLINNAG 92 (241)
T ss_pred EEEECCC
Confidence 8887644
No 484
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=69.22 E-value=53 Score=26.24 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=56.4
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc-c--CCCC-ceEEEeccccccccCCCCeeEEEeCcch
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY-S--NRPQ-LKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~-~--~~~~-~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+|+-+|+|. +.++..+++.| ..|+.+--++. ++..++.- . .... ..+...-.. .+.....+|+|+.. .
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~--~~~~~~~~Dlviv~--v 75 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAAT--DAEALGPADLVIVT--V 75 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhCCeEEecCCCcccccccccc--ChhhcCCCCEEEEE--e
Confidence 688899986 56677777777 47777665554 55555531 0 1111 011111111 11234579998853 1
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
- .-+....++.+...+++...+++.-
T Consensus 76 K--------a~q~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 76 K--------AYQLEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred c--------cccHHHHHHHhhhcCCCCcEEEEEe
Confidence 1 1467889999999999998877654
No 485
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=69.22 E-value=9.4 Score=32.30 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=48.9
Q ss_pred CcEEEEcCCC-chhhHHH-HhcCCCcEE------EEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeC
Q 028547 49 QRILIVGCGN-SAFSEGM-VDDGYEDVV------NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l-~~~~~~~v~------~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
++|+-+|||+ |.....- ...|. +|+ ++|......+.|.+. . |...+..+. -...|+|++-
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA~~d-----G--F~v~~~~Ea----~~~ADvVviL 104 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKATEN-----G--FKVGTYEEL----IPQADLVINL 104 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccchHHHHHhc-----C--CccCCHHHH----HHhCCEEEEc
Confidence 4999999997 5421111 11233 444 334334444444332 1 222333333 2357988864
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-+- .....+.+++...|+||..|.++.
T Consensus 105 lPD----------t~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 105 TPD----------KQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred CCh----------HHHHHHHHHHHhhCCCCCEEEecC
Confidence 221 235666799999999999999865
No 486
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=69.01 E-value=60 Score=29.11 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=45.9
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEecccccccc---------CCCC
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++||-.|++.| .++..+++.|. +|++++.+....+...+.+.. ...+.++.+|+.+.... .-+.
T Consensus 415 kvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~ 493 (676)
T TIGR02632 415 RVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGG 493 (676)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 47777777554 33445555676 999999988766655444321 12466788888774211 1246
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
.|+++.+..+
T Consensus 494 iDilV~nAG~ 503 (676)
T TIGR02632 494 VDIVVNNAGI 503 (676)
T ss_pred CcEEEECCCC
Confidence 8988876543
No 487
>PRK05854 short chain dehydrogenase; Provisional
Probab=68.99 E-value=43 Score=26.54 Aligned_cols=74 Identities=11% Similarity=0.240 Sum_probs=46.7
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEecccccccc---------CCCC
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
+++|-.|++.| ..+..+++.|. +|+.+.-+.+..+.+.+.+.. ..++.++.+|+.+.... ..+.
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~ 93 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRP 93 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 47787787665 34455566676 888888877655554443321 13578888998875211 1356
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
.|+++.+...
T Consensus 94 iD~li~nAG~ 103 (313)
T PRK05854 94 IHLLINNAGV 103 (313)
T ss_pred ccEEEECCcc
Confidence 8988877543
No 488
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=68.92 E-value=19 Score=28.68 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHccCCCCceEEEecccccc-ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 78 ISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 78 ~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
..+...+.++.+. .++.+.++|+.+.. ..+.++.|.++...+-+|+ +......++.++.+-+.+|..+++-
T Consensus 294 l~~~~YEsir~n~---~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwm-----td~qln~lws~isrta~~gA~VifR 365 (414)
T COG5379 294 LDEGVYESIRQNL---RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWM-----TDGQLNSLWSEISRTAEAGARVIFR 365 (414)
T ss_pred hchhhHHHHHhhh---hheeeecccHHHHhccCCCCCcceEEEecchhhc-----ccchHHHHHHHHhhccCCCcEEEEe
Confidence 3444555555544 35889999999863 2367899999988888887 5568899999999999999999987
Q ss_pred Ee
Q 028547 157 TY 158 (207)
Q Consensus 157 ~~ 158 (207)
+.
T Consensus 366 ta 367 (414)
T COG5379 366 TA 367 (414)
T ss_pred cc
Confidence 63
No 489
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=68.85 E-value=25 Score=26.92 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=48.6
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|++.| .++..+++.|+ +++.++-+++.++.....+... .++.++.+|+.+.... ..+..|
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 89 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVID 89 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 47888888765 44556677777 7888888887666655554332 3577888998875211 124689
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
.++.+...
T Consensus 90 ~li~~ag~ 97 (265)
T PRK07097 90 ILVNNAGI 97 (265)
T ss_pred EEEECCCC
Confidence 88876543
No 490
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.76 E-value=34 Score=27.32 Aligned_cols=93 Identities=16% Similarity=0.252 Sum_probs=51.1
Q ss_pred CcEEEEcCCC-chhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEecc---ccccccCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGN-SAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV---RQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~fD~v~~~~~l 123 (207)
.+||-.|+|. |..+..+++.. ...+++++-+++....+++. ....-+.....+. .+. ...+.+|+|+..-
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~--~~~~~vd~vld~~-- 239 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GADVVINPREEDVVEVKSV--TDGTGVDVVLEMS-- 239 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CcceeeCcccccHHHHHHH--cCCCCCCEEEECC--
Confidence 3677677653 56666666653 33688887777666655542 1100000111111 111 1345789998531
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+..+.+.|+++|.++...
T Consensus 240 -----------g~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 240 -----------GNPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred -----------CCHHHHHHHHHHhccCCEEEEEc
Confidence 11234667788999999987654
No 491
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=68.71 E-value=51 Score=26.03 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=40.6
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCH---HHHHHHHHHccC-CCCceEEEecccccccc--CCCCeeEEE
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISS---VVIEAMMKKYSN-RPQLKYIKMDVRQMDEF--QTGSFDSVV 118 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~---~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~--~~~~fD~v~ 118 (207)
.+++|-+|+| | ..+..+++.|.++++.++.++ +..+...+.+.. ...+.+...|+.+.... .-..+|+|+
T Consensus 126 ~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilI 204 (289)
T PRK12548 126 GKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILV 204 (289)
T ss_pred CCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEE
Confidence 3489999997 4 222334566776799999875 333333333321 12334455555432111 123569888
Q ss_pred eCcchh
Q 028547 119 DKGTLD 124 (207)
Q Consensus 119 ~~~~l~ 124 (207)
..-++.
T Consensus 205 NaTp~G 210 (289)
T PRK12548 205 NATLVG 210 (289)
T ss_pred EeCCCC
Confidence 765444
No 492
>PRK09291 short chain dehydrogenase; Provisional
Probab=68.62 E-value=19 Score=27.29 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=43.5
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---CCCCeeEEEeCcc
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---QTGSFDSVVDKGT 122 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---~~~~fD~v~~~~~ 122 (207)
+||-.|++.| .++..+++.|+ ++++++-++............ ..++.++.+|+.+.... .....|+++.+..
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ag 82 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNAG 82 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECCC
Confidence 6777777544 23444556676 888888776555444433222 13578888888775211 2347898887643
No 493
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=68.37 E-value=12 Score=32.14 Aligned_cols=93 Identities=11% Similarity=0.199 Sum_probs=57.0
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--------CC-----------CCceEEEeccccccc
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--------NR-----------PQLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--------~~-----------~~~~~~~~d~~~~~~ 108 (207)
+|-=||+|+ | .++..++..|+ +|+..|.+++.++.+.+++. .. .++.. ..|....
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-~~~~~~l-- 82 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP-VTDLHAL-- 82 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE-eCCHHHh--
Confidence 688889885 3 55566677777 99999999999887644322 10 01221 1222211
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...|+|+.. +.+. .+-...++.++.+.++++.++...+
T Consensus 83 ---~~aDlVIEa-v~E~-------~~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 83 ---ADAGLVIEA-IVEN-------LEVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred ---CCCCEEEEc-CcCc-------HHHHHHHHHHHHhhCCCCeEEEECC
Confidence 256888864 2232 2566677888888888876654434
No 494
>PRK06196 oxidoreductase; Provisional
Probab=68.34 E-value=22 Score=28.21 Aligned_cols=71 Identities=8% Similarity=0.213 Sum_probs=45.2
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
++||-.|++.| .++..+++.|+ +|++++-+++..+.....+ ..+.++.+|+.+.... ..+..|+
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~ 102 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRRIDI 102 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCCCCE
Confidence 47888887554 33445555676 8999988877655544433 2367888888875211 1256899
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+...
T Consensus 103 li~nAg~ 109 (315)
T PRK06196 103 LINNAGV 109 (315)
T ss_pred EEECCCC
Confidence 8876543
No 495
>PRK06172 short chain dehydrogenase; Provisional
Probab=68.16 E-value=22 Score=26.84 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=46.0
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++||-.|++.| .++..+++.|. +|+.++-+++.++...+.+.. ..++.++.+|+.+.... ..+..|
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id 86 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRLD 86 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 37888887554 34445566676 899999887765554444332 24678888888764211 114679
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
.++.+..
T Consensus 87 ~li~~ag 93 (253)
T PRK06172 87 YAFNNAG 93 (253)
T ss_pred EEEECCC
Confidence 8887643
No 496
>PRK07326 short chain dehydrogenase; Provisional
Probab=68.12 E-value=28 Score=25.95 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=43.0
Q ss_pred cEEEEcCCCchhh----HHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 50 RILIVGCGNSAFS----EGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 50 ~vLdiG~G~G~~~----~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+||-.|+ +|.++ ..+++.|+ +|++++.++.......+.+.....+.++.+|+.+...+ ..+..|.
T Consensus 8 ~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 85 (237)
T PRK07326 8 VALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDV 85 (237)
T ss_pred EEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 7888885 44333 34445566 79999988876655544443224577888887764211 1136788
Q ss_pred EEeCc
Q 028547 117 VVDKG 121 (207)
Q Consensus 117 v~~~~ 121 (207)
|+...
T Consensus 86 vi~~a 90 (237)
T PRK07326 86 LIANA 90 (237)
T ss_pred EEECC
Confidence 88653
No 497
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=67.99 E-value=18 Score=25.65 Aligned_cols=93 Identities=20% Similarity=0.207 Sum_probs=52.0
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|-=||+|. ..++..+.+.|+ +|++.|.+++..+...+.- -....+..+.. ...|+|+..- .
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g------~~~~~s~~e~~----~~~dvvi~~v--~--- 66 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAG------AEVADSPAEAA----EQADVVILCV--P--- 66 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTT------EEEESSHHHHH----HHBSEEEE-S--S---
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhh------hhhhhhhhhHh----hcccceEeec--c---
Confidence 455677764 244455566677 9999999998777766541 22233333331 2348888641 1
Q ss_pred cCCCChhhHHHHHHH--HHHhcCCCcEEEEEEeCCcc
Q 028547 128 CGSNSRQNATQMLKE--VWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~--~~~~L~pgG~~~~~~~~~~~ 162 (207)
+.......+.. +...|++|.+++-.+-..+.
T Consensus 67 ----~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~ 99 (163)
T PF03446_consen 67 ----DDDAVEAVLFGENILAGLRPGKIIIDMSTISPE 99 (163)
T ss_dssp ----SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HH
T ss_pred ----cchhhhhhhhhhHHhhccccceEEEecCCcchh
Confidence 22556677777 77888887777655544443
No 498
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=67.88 E-value=37 Score=26.89 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=51.7
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|--||+|. +.++..+.+.++ +|++.|.+++.++.+.+.-. . ...+..+.. ......|+|+..-+-
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~-----~-~~~s~~~~~-~~~~~~dvIi~~vp~---- 69 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRT-----T-GVANLRELS-QRLSAPRVVWVMVPH---- 69 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC-----c-ccCCHHHHH-hhcCCCCEEEEEcCc----
Confidence 456678775 345566667777 89999999987777665311 0 012222221 011345888754211
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
......++.+...|++|-+++-
T Consensus 70 ------~~~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 70 ------GIVDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred ------hHHHHHHHHHHhhCCCCCEEEE
Confidence 2456777888888888755443
No 499
>PRK07774 short chain dehydrogenase; Provisional
Probab=67.68 E-value=22 Score=26.78 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=43.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|+..| .++..+++.|. ++++++-++.......+.... ..++.++..|+.+.... ..+..|
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 85 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGID 85 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 37787775433 33344555666 899999887655444443322 13566778888875211 113589
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
+|+.+..
T Consensus 86 ~vi~~ag 92 (250)
T PRK07774 86 YLVNNAA 92 (250)
T ss_pred EEEECCC
Confidence 8887654
No 500
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=67.65 E-value=31 Score=26.28 Aligned_cols=72 Identities=21% Similarity=0.367 Sum_probs=46.6
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+++|-.|++.| .++..+++.|+ +|+.++-+++.++...+... .++.++.+|+.+.... ..+..|+
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 83 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFG--DHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC 83 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 37888887655 34445666677 89999988877666555442 2567788888764211 1246788
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+..+
T Consensus 84 li~~ag~ 90 (263)
T PRK06200 84 FVGNAGI 90 (263)
T ss_pred EEECCCC
Confidence 8876543
Done!