BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028548
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J82|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
From Thermosynechococcus Elongatus
pdb|2J86|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
Of Thermosynechococcus Elongatus
pdb|2J86|B Chain B, Structural Analysis Of The Pp2c Family Phosphatase Tppha
Of Thermosynechococcus Elongatus
Length = 240
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 68 VERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQ 127
+ + +DAF++ + VADG+ G A L + +ED++ +DP
Sbjct: 12 IRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQ--HDPV 69
Query: 128 ILMRKA-----HA---------ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQ 173
L+R+A HA A + +G+ V++ + E+ A VGD + RK Q
Sbjct: 70 TLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQ 129
Query: 174 I 174
+
Sbjct: 130 L 130
>pdb|2XZV|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
Three Metals In The Catalytic Center For Efficient
Catalysis
Length = 240
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 68 VERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQ 127
+ + +DAF++ + VADG+ G A L + +ED++ +DP
Sbjct: 12 IRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQ--HDPV 69
Query: 128 ILMRKA-----HA---------ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQ 173
L+R+A HA A + +G+ V++ + E+ A VGD + RK Q
Sbjct: 70 TLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQ 129
Query: 174 I 174
+
Sbjct: 130 L 130
>pdb|2Y09|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
Three Metals In The Catalytic Center For Efficient
Catalysis
Length = 240
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 68 VERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQ 127
+ + +DAF++ + VADG+ G A L + +ED++ +DP
Sbjct: 12 IRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQ--HDPV 69
Query: 128 ILMRKA-----HA---------ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQ 173
L+R+A HA A + +G+ V++ + E+ A VG + RK Q
Sbjct: 70 TLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGASRIYRWRKDQ 129
Query: 174 I 174
+
Sbjct: 130 L 130
>pdb|3RNR|A Chain A, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
pdb|3RNR|B Chain B, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
Length = 211
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 141 GSATVIVAMLERNGILKVASVGDCGLRIIRKGQIT 175
G+ + A+ R+G L+ ASVGDC + + + G+++
Sbjct: 71 GATXAVAAVNLRDGTLEWASVGDCRVYLFKGGRLS 105
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 136 ATSSVGSATVIVAMLERNGI-LKVASVGDCGLRIIRKG---QITFSSSPQ-----EHYFD 186
AT T VA+L R+GI L VASVGD + RKG ++T +P+ E
Sbjct: 96 ATLLTSGTTATVALL-RDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKK 154
Query: 187 CPYQLSSEAVGQTYLD---AMQR 206
C ++ ++GQ +++ AM R
Sbjct: 155 CGGFVAWNSLGQPHVNGRLAMTR 177
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 136 ATSSVGSATVIVAMLERNGI-LKVASVGDCGLRIIRKG---QITFSSSPQ-----EHYFD 186
AT T VA+L R+GI L VASVGD + RKG ++T +P+ E
Sbjct: 210 ATLLTSGTTATVALL-RDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKK 268
Query: 187 CPYQLSSEAVGQTYLD---AMQR 206
C ++ ++GQ +++ AM R
Sbjct: 269 CGGFVAWNSLGQPHVNGRLAMTR 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,894,790
Number of Sequences: 62578
Number of extensions: 225574
Number of successful extensions: 489
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 7
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)