Query 028548
Match_columns 207
No_of_seqs 234 out of 1176
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 13:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1379 Serine/threonine prote 100.0 2.6E-34 5.6E-39 249.1 15.4 154 53-206 72-239 (330)
2 COG0631 PTC1 Serine/threonine 99.9 5.9E-26 1.3E-30 195.8 11.8 127 55-182 6-148 (262)
3 PRK14559 putative protein seri 99.9 2.7E-23 5.9E-28 197.8 12.8 125 55-182 373-525 (645)
4 PLN03145 Protein phosphatase 2 99.9 2.6E-21 5.6E-26 174.1 14.8 118 57-182 65-206 (365)
5 cd00143 PP2Cc Serine/threonine 99.8 4E-19 8.6E-24 148.7 12.3 122 61-184 4-141 (254)
6 PTZ00224 protein phosphatase 2 99.8 5.8E-19 1.3E-23 159.6 13.2 124 57-188 22-149 (381)
7 smart00332 PP2Cc Serine/threon 99.8 3.8E-18 8.1E-23 143.5 12.4 117 63-183 11-143 (255)
8 PF13672 PP2C_2: Protein phosp 99.7 1.8E-16 3.9E-21 130.8 9.4 123 62-185 3-141 (212)
9 PF00481 PP2C: Protein phospha 99.7 1.3E-16 2.8E-21 136.1 8.2 116 66-188 8-144 (254)
10 KOG0698 Serine/threonine prote 99.5 8.7E-14 1.9E-18 123.8 13.1 112 66-181 48-181 (330)
11 KOG0697 Protein phosphatase 1B 99.3 4.5E-12 9.7E-17 109.4 9.1 124 55-188 22-169 (379)
12 KOG0700 Protein phosphatase 2C 99.2 1.4E-10 3.1E-15 104.2 9.4 41 142-182 201-247 (390)
13 smart00331 PP2C_SIG Sigma fact 99.1 1.7E-09 3.7E-14 87.9 13.7 111 61-180 8-126 (193)
14 KOG1323 Serine/threonine phosp 98.9 6.6E-09 1.4E-13 91.9 7.9 99 82-181 143-285 (493)
15 TIGR02865 spore_II_E stage II 98.4 3.2E-06 7E-11 83.1 12.0 121 51-180 548-675 (764)
16 PF07228 SpoIIE: Stage II spor 98.1 4.1E-05 8.9E-10 61.7 10.6 88 83-177 4-99 (193)
17 KOG0699 Serine/threonine prote 97.9 1.7E-05 3.6E-10 71.3 5.0 41 142-182 330-370 (542)
18 KOG0699 Serine/threonine prote 96.2 0.0071 1.5E-07 54.8 4.8 44 51-98 19-65 (542)
19 PRK10693 response regulator of 83.0 23 0.00049 30.9 11.3 102 72-174 150-259 (303)
20 KOG0618 Serine/threonine phosp 50.1 10 0.00022 38.7 2.0 31 154-184 629-659 (1081)
21 COG2208 RsbU Serine phosphatas 34.6 3.3E+02 0.0072 24.2 11.6 109 55-173 149-264 (367)
22 PF14133 DUF4300: Domain of un 27.4 1.5E+02 0.0033 25.7 5.3 43 144-193 170-215 (250)
23 COG3787 Uncharacterized protei 23.5 1.5E+02 0.0032 23.4 4.1 45 147-195 16-66 (145)
24 PF07883 Cupin_2: Cupin domain 22.5 2E+02 0.0043 18.4 4.2 36 147-185 22-57 (71)
25 cd00028 B_lectin Bulb-type man 22.3 2.1E+02 0.0045 20.9 4.7 28 161-188 86-116 (116)
26 TIGR02276 beta_rpt_yvtn 40-res 21.6 1.6E+02 0.0034 16.8 3.3 19 153-171 3-21 (42)
No 1
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-34 Score=249.06 Aligned_cols=154 Identities=44% Similarity=0.713 Sum_probs=134.8
Q ss_pred eeEEEEEEEecCCCCCCCCCCceEEEecc-CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccC-cccHHHHH
Q 028548 53 LSFCVGTHLIPHPNKVERGGEDAFFVSCY-NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEV-NYDPQILM 130 (207)
Q Consensus 53 ~~~~~~~~~~~~~g~~R~~nEDa~~~~~~-~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~-~~~~~~~l 130 (207)
+....+.+..+++.++-+.+||++|+..+ ...++|||||||||+.-|+++++|+++||+++.+....... ..+|..+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~GEDa~Fvss~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL 151 (330)
T KOG1379|consen 72 LCGFSKDFIRPHPSKVGKGGEDAWFVSSNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLL 151 (330)
T ss_pred hccccccccCCccccCCCCCCcceeeccCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHH
Confidence 34445667788888888999999999875 45799999999999999999999999999999988765433 34899999
Q ss_pred HHHHHccCCC-----CCcceEEEEEEe-CCeEEEEEeCCCCeEEEECCeEEEeCcceeecCCCceecccCC------CCC
Q 028548 131 RKAHAATSSV-----GSATVIVAMLER-NGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEA------VGQ 198 (207)
Q Consensus 131 ~~A~~~~~~~-----g~~Tt~va~l~~-~~~l~vanVGDSR~yllR~g~l~~lT~dq~h~f~~p~Ql~~~~------~~~ 198 (207)
.+||.+.... |++|+|++.+.. +++||++|+|||.+.++|+|++++.|.+|+|+||+||||+..+ ..|
T Consensus 152 ~~ay~~l~~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d 231 (330)
T KOG1379|consen 152 EKAYAELKSQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISD 231 (330)
T ss_pred HHHHHHHhhcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccC
Confidence 9999876544 999999999985 5689999999999999999999999999999999999999987 388
Q ss_pred Cccccccc
Q 028548 199 TYLDAMQR 206 (207)
Q Consensus 199 ~~~~~~~~ 206 (207)
.|+.|+++
T Consensus 232 ~p~~ad~~ 239 (330)
T KOG1379|consen 232 VPDSADVT 239 (330)
T ss_pred CccccceE
Confidence 88888876
No 2
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=5.9e-26 Score=195.85 Aligned_cols=127 Identities=24% Similarity=0.301 Sum_probs=99.1
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEeccCC----eEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCcccHHHHH
Q 028548 55 FCVGTHLIPHPNKVERGGEDAFFVSCYNG----GVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILM 130 (207)
Q Consensus 55 ~~~~~~~~~~~g~~R~~nEDa~~~~~~~~----~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~l 130 (207)
+....++.+++|.+|..|||++++..+.. .+++||||||||++|++||+++++.|.+.+.+..... ......+.|
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~-~~~~~~~~l 84 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNS-LNESLEELL 84 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccc-cchhHHHHH
Confidence 44566788999999999999999986422 3999999999999999999999999988875532210 000022222
Q ss_pred HH------------HHHccCCCCCcceEEEEEEeCCeEEEEEeCCCCeEEEECCeEEEeCccee
Q 028548 131 RK------------AHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQE 182 (207)
Q Consensus 131 ~~------------A~~~~~~~g~~Tt~va~l~~~~~l~vanVGDSR~yllR~g~l~~lT~dq~ 182 (207)
.+ +..+....+|+||+++++..++++|++||||||+|++|+|++.|+|+||.
T Consensus 85 ~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~ 148 (262)
T COG0631 85 KEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHS 148 (262)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCc
Confidence 22 22234568899999999998889999999999999999999999999964
No 3
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.90 E-value=2.7e-23 Score=197.76 Aligned_cols=125 Identities=22% Similarity=0.249 Sum_probs=93.7
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEecc-------------CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhccc
Q 028548 55 FCVGTHLIPHPNKVERGGEDAFFVSCY-------------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVE 121 (207)
Q Consensus 55 ~~~~~~~~~~~g~~R~~nEDa~~~~~~-------------~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~ 121 (207)
+.+..++.+|+|++|+.|||++.+... ...+|+||||||||.+|++||.++++.+.+.+.+....
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~-- 450 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQD-- 450 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcc--
Confidence 456678899999999999999876531 13589999999999999999999999987766533221
Q ss_pred CcccHHHHHHHHH------------Hcc--CCCCCcceEEEEEEeCCeEEEEEeCCCCeEEE-ECCeEEEeCccee
Q 028548 122 VNYDPQILMRKAH------------AAT--SSVGSATVIVAMLERNGILKVASVGDCGLRII-RKGQITFSSSPQE 182 (207)
Q Consensus 122 ~~~~~~~~l~~A~------------~~~--~~~g~~Tt~va~l~~~~~l~vanVGDSR~yll-R~g~l~~lT~dq~ 182 (207)
.....+.+++++ +.. ...+||||+++++..++++|++||||||+|++ |+|++.|+|+||.
T Consensus 451 -~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs 525 (645)
T PRK14559 451 -ELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHE 525 (645)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCC
Confidence 111222222221 111 34468888888888888999999999999998 5789999999964
No 4
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.87 E-value=2.6e-21 Score=174.10 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=84.9
Q ss_pred EEEEEecCCCCCCCCCCceEEEecc-------------CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCc
Q 028548 57 VGTHLIPHPNKVERGGEDAFFVSCY-------------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVN 123 (207)
Q Consensus 57 ~~~~~~~~~g~~R~~nEDa~~~~~~-------------~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~ 123 (207)
+.+.+.+++|. |++|||++++..+ ...+|+|||||||+..|++++..+.+.+.+... ..
T Consensus 65 ~~~~~~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~-------~~ 136 (365)
T PLN03145 65 VRSGAWADIGS-RSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED-------FP 136 (365)
T ss_pred eEEEEEccccC-CCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc-------cc
Confidence 56678889996 9999999886542 136899999999999988888887777654210 11
Q ss_pred ccHHHHHHHHHHc-----------cCCCCCcceEEEEEEeCCeEEEEEeCCCCeEEEECCeEEEeCccee
Q 028548 124 YDPQILMRKAHAA-----------TSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQE 182 (207)
Q Consensus 124 ~~~~~~l~~A~~~-----------~~~~g~~Tt~va~l~~~~~l~vanVGDSR~yllR~g~l~~lT~dq~ 182 (207)
.+..+.|.+++.. .....||||+++++..++.+|++||||||+|++|+|+++++|+||.
T Consensus 137 ~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~ 206 (365)
T PLN03145 137 REIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHK 206 (365)
T ss_pred hhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCC
Confidence 1223333333221 1223366666666666678999999999999999999999999954
No 5
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.80 E-value=4e-19 Score=148.72 Aligned_cols=122 Identities=25% Similarity=0.295 Sum_probs=86.4
Q ss_pred EecCCCCCCCCCCceEEEecc----CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCcccHHHHHHHHH--
Q 028548 61 LIPHPNKVERGGEDAFFVSCY----NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAH-- 134 (207)
Q Consensus 61 ~~~~~g~~R~~nEDa~~~~~~----~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~-- 134 (207)
+.++.+..|+.|||++++... +..+++|||||||+..++.+|..+++.+.+.+..... .....+...|++++
T Consensus 4 ~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~ 81 (254)
T cd00143 4 GVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT--LSEEDIEEALRKAFLR 81 (254)
T ss_pred eeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHH
Confidence 345566668899999998764 3479999999999999899999999888776543311 00112222232222
Q ss_pred --Hc--------cCCCCCcceEEEEEEeCCeEEEEEeCCCCeEEEECCeEEEeCcceeec
Q 028548 135 --AA--------TSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHY 184 (207)
Q Consensus 135 --~~--------~~~~g~~Tt~va~l~~~~~l~vanVGDSR~yllR~g~l~~lT~dq~h~ 184 (207)
+. .....++||+++++..+++++++|+||||+|++|++++.++|+||.+.
T Consensus 82 ~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~ 141 (254)
T cd00143 82 ADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPV 141 (254)
T ss_pred HHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCc
Confidence 11 122445666666666667999999999999999999999999996554
No 6
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.80 E-value=5.8e-19 Score=159.62 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=79.7
Q ss_pred EEEEEecCCCCCCCCCCceEEEecc-CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCcccHHHHHHHH--
Q 028548 57 VGTHLIPHPNKVERGGEDAFFVSCY-NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKA-- 133 (207)
Q Consensus 57 ~~~~~~~~~g~~R~~nEDa~~~~~~-~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A-- 133 (207)
+.+.+.+++|+ |++|||++++... +..+|+|||||||.. +|..+++.+.+.+.+.... ........++..+
T Consensus 22 ~~~g~~s~~G~-R~~nED~~~v~~~~~~~lfgVfDGHgG~~----~S~~~~~~l~~~l~~~~~~-~~~~~l~~a~~~~d~ 95 (381)
T PTZ00224 22 FRCASACVNGY-RESMEDAHLLYLTDDWGFFGVFDGHVNDE----CSQYLARAWPQALEKEPEP-MTDERMEELCLEIDE 95 (381)
T ss_pred EEEEEEeCCCC-CCCCCCeeEeccCCCceEEEEEeCCCcHH----HHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHH
Confidence 34556677888 8999999876432 346999999998653 4666666555443221100 0000111222221
Q ss_pred -HHccCCCCCcceEEEEEEeCCeEEEEEeCCCCeEEEECCeEEEeCcceeecCCCc
Q 028548 134 -HAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCP 188 (207)
Q Consensus 134 -~~~~~~~g~~Tt~va~l~~~~~l~vanVGDSR~yllR~g~l~~lT~dq~h~f~~p 188 (207)
+.+....+++|++++++..+.+++|+||||||+|++|+|+++++|+| |.+..+
T Consensus 96 ~i~~~~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~D--H~~~~~ 149 (381)
T PTZ00224 96 EWMDSGREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATED--HKPNNP 149 (381)
T ss_pred HHHhcccCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccC--CCCCCH
Confidence 22222345677777777766689999999999999999999999999 555443
No 7
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.77 E-value=3.8e-18 Score=143.52 Aligned_cols=117 Identities=23% Similarity=0.233 Sum_probs=79.1
Q ss_pred cCCCCCCCCCCceEEEecc---CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccC-cccHHHHHHHHHHc--
Q 028548 63 PHPNKVERGGEDAFFVSCY---NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEV-NYDPQILMRKAHAA-- 136 (207)
Q Consensus 63 ~~~g~~R~~nEDa~~~~~~---~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~A~~~-- 136 (207)
++.+..|..|||++++... +..+++|||||||... |..+++.+.+.+.+....... ...+.++|++++..
T Consensus 11 ~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (255)
T smart00332 11 SSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEA----AKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTD 86 (255)
T ss_pred ecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHH----HHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHH
Confidence 5567789999999988763 4569999999996554 555555555444332221100 01244444443321
Q ss_pred ----------cCCCCCcceEEEEEEeCCeEEEEEeCCCCeEEEECCeEEEeCcceee
Q 028548 137 ----------TSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEH 183 (207)
Q Consensus 137 ----------~~~~g~~Tt~va~l~~~~~l~vanVGDSR~yllR~g~l~~lT~dq~h 183 (207)
.....++||+++++...++++++|+||||+|++|++++.++|+||..
T Consensus 87 ~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~ 143 (255)
T smart00332 87 EEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKP 143 (255)
T ss_pred HHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCC
Confidence 11235667776666666789999999999999999999999999887
No 8
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.68 E-value=1.8e-16 Score=130.83 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=76.4
Q ss_pred ecCCCCCCCCCCceEEEecc-CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCc---ccHHHHHHHHH---
Q 028548 62 IPHPNKVERGGEDAFFVSCY-NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVN---YDPQILMRKAH--- 134 (207)
Q Consensus 62 ~~~~g~~R~~nEDa~~~~~~-~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~A~--- 134 (207)
.+|.++ +..|||++.+... +..+++|||||||+..++.+|.++++.+.+.+.+........ .....+.++.+
T Consensus 3 ~sh~~~-~~~nqD~~~~~~~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T PF13672_consen 3 RSHRGR-GAPNQDAFGIRTDDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIV 81 (212)
T ss_dssp ----TT-SSS--EEEEEE-TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC-CCCCCCCEEeeeCCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 356665 7899999986653 457889999999999999999999999988776554321110 00111222221
Q ss_pred --------HccCCCCCcceEEEEEEeCCeEEEEEeCCCCeEE-EECCeEEEeCcceeecC
Q 028548 135 --------AATSSVGSATVIVAMLERNGILKVASVGDCGLRI-IRKGQITFSSSPQEHYF 185 (207)
Q Consensus 135 --------~~~~~~g~~Tt~va~l~~~~~l~vanVGDSR~yl-lR~g~l~~lT~dq~h~f 185 (207)
.......++||+++++..++.++++||||||+|+ .++|++..+|.++...+
T Consensus 82 ~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~ 141 (212)
T PF13672_consen 82 RAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEY 141 (212)
T ss_dssp ----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHH
T ss_pred hhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchh
Confidence 1233455677777777777799999999999965 58999999999976444
No 9
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.67 E-value=1.3e-16 Score=136.07 Aligned_cols=116 Identities=25% Similarity=0.235 Sum_probs=69.9
Q ss_pred CCCCCCCCceEEEecc--------CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCcccHHHHHHHHHHc-
Q 028548 66 NKVERGGEDAFFVSCY--------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAA- 136 (207)
Q Consensus 66 g~~R~~nEDa~~~~~~--------~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~~- 136 (207)
...|+.|||.+++..+ +..+|+|+|||||+..+..++..+...+....... ......+.|.+++..
T Consensus 8 ~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~-----~~~~~~~al~~a~~~~ 82 (254)
T PF00481_consen 8 QGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFN-----DGNDIEEALRQAFLAF 82 (254)
T ss_dssp ECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHH
T ss_pred CCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccc-----cccchhhcccceeeec
Confidence 3458999999988762 34699999999988765555444443322221111 010233333333222
Q ss_pred ---------c--CCCCCcceEEEEEEeCCeEEEEEeCCCCeEEEECCeEE-EeCcceeecCCCc
Q 028548 137 ---------T--SSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQIT-FSSSPQEHYFDCP 188 (207)
Q Consensus 137 ---------~--~~~g~~Tt~va~l~~~~~l~vanVGDSR~yllR~g~l~-~lT~dq~h~f~~p 188 (207)
. ....+|||+++++..+.++|++||||||+|+++++... +||+| |..+.|
T Consensus 83 ~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~d--H~~~~~ 144 (254)
T PF00481_consen 83 TDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRD--HKPSNP 144 (254)
T ss_dssp HHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS-----STTSH
T ss_pred ccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccc--cccchh
Confidence 0 22344555555555566899999999999999999998 99999 554443
No 10
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.54 E-value=8.7e-14 Score=123.80 Aligned_cols=112 Identities=24% Similarity=0.218 Sum_probs=75.7
Q ss_pred CCCCCCCCceEEEecc----------CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCcccHHHHHHHHHH
Q 028548 66 NKVERGGEDAFFVSCY----------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHA 135 (207)
Q Consensus 66 g~~R~~nEDa~~~~~~----------~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~ 135 (207)
+..|..|||.+..... ...+|||+|||||+.. |..+.+.|...+.+............+.+.+++.
T Consensus 48 ~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~----A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~F~ 123 (330)
T KOG0698|consen 48 RGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLA----AKFAAKHLHKNLLEQLAFPKDRQDVKDALRRAFL 123 (330)
T ss_pred CCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHH----HHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Confidence 3447889999877653 2469999999997654 3333334544444332221111234555666655
Q ss_pred -cc----------CCCCCcceEEEEEEeCCeEEEEEeCCCCeEEEECC-eEEEeCcce
Q 028548 136 -AT----------SSVGSATVIVAMLERNGILKVASVGDCGLRIIRKG-QITFSSSPQ 181 (207)
Q Consensus 136 -~~----------~~~g~~Tt~va~l~~~~~l~vanVGDSR~yllR~g-~l~~lT~dq 181 (207)
.+ ...+++|++++++..+.+||++|+||||+++++.| +.++||.||
T Consensus 124 ~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DH 181 (330)
T KOG0698|consen 124 TKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDH 181 (330)
T ss_pred HHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCC
Confidence 21 25677888888888666899999999999999865 899999994
No 11
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.34 E-value=4.5e-12 Score=109.36 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=75.5
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEecc------CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhh--hcc--cC--
Q 028548 55 FCVGTHLIPHPNKVERGGEDAFFVSCY------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFV--EDV--EV-- 122 (207)
Q Consensus 55 ~~~~~~~~~~~g~~R~~nEDa~~~~~~------~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~--~~~--~~-- 122 (207)
+.+|-.++ .|. |-.|||++.+... +..+|||+|||.|+.. |...+..|++.+...- ... ..
T Consensus 22 lryg~SSM--QGW-R~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~v----a~~c~~hLlehi~sse~F~~~~k~gsv 94 (379)
T KOG0697|consen 22 LRYGVSSM--QGW-RVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQV----ANHCAEHLLEHIISSEEFRGMTKNGSV 94 (379)
T ss_pred eeeeeccc--cch-hhhhhhhhhhhhcCCCCccCceEEEEEcCccchHH----HHHHHHHHHHHhhhhHHHhhhccCCcH
Confidence 33443344 344 7899999987541 4579999999998765 4445555665543211 000 00
Q ss_pred ----------cccHHHHHHHHHH--ccCCCCCcceEEEEEEeCCeEEEEEeCCCCeEEEECCeEEEeCcceeecCCCc
Q 028548 123 ----------NYDPQILMRKAHA--ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCP 188 (207)
Q Consensus 123 ----------~~~~~~~l~~A~~--~~~~~g~~Tt~va~l~~~~~l~vanVGDSR~yllR~g~l~~lT~dq~h~f~~p 188 (207)
-....++++.... +....+++|++.+++... ++|++|+||||++++|+|+.++-|+| |....|
T Consensus 95 ~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~-h~y~~NcGDSRavl~rng~~~f~TqD--HKP~~p 169 (379)
T KOG0697|consen 95 ENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPT-HIYIINCGDSRAVLCRNGEVVFSTQD--HKPYLP 169 (379)
T ss_pred HHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCc-eEEEEecCcchhheecCCceEEeccC--CCCCCh
Confidence 0112222222221 112345566666655554 79999999999999999999999988 554444
No 12
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.16 E-value=1.4e-10 Score=104.17 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=29.7
Q ss_pred CcceEEEEEEeCCeEEEEEeCCCCeEEEE---CC---eEEEeCccee
Q 028548 142 SATVIVAMLERNGILKVASVGDCGLRIIR---KG---QITFSSSPQE 182 (207)
Q Consensus 142 ~~Tt~va~l~~~~~l~vanVGDSR~yllR---~g---~l~~lT~dq~ 182 (207)
+|++|+..+..+..|||+|+||||++|-+ +| ..+|||+||.
T Consensus 201 ~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn 247 (390)
T KOG0700|consen 201 VGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHN 247 (390)
T ss_pred hcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhc
Confidence 44444444555668999999999999965 33 4688888854
No 13
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.13 E-value=1.7e-09 Score=87.88 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=68.7
Q ss_pred EecCCCCCCCCCCceEEEecc--CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCcccHHHHHHHHHH---
Q 028548 61 LIPHPNKVERGGEDAFFVSCY--NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHA--- 135 (207)
Q Consensus 61 ~~~~~g~~R~~nEDa~~~~~~--~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~--- 135 (207)
.+..|+ ...+.|.+.+... +..+++|+||||+. ..|++++..+...+.+.... ...+.++++...+
T Consensus 8 ~~~~p~--~~~~GD~~~~~~~~~~~~~~~v~Dg~G~G----~~aa~~s~~~~~~~~~~~~~---~~~~~~~l~~~n~~l~ 78 (193)
T smart00331 8 QYYEDA--TQVGGDFYDVVKLPEGRLLIAIADVMGKG----LAAALAMSMARSALRTLLSE---GISLSQILERLNRAIY 78 (193)
T ss_pred EEEcch--HhcCccEEEEEEeCCCeEEEEEEecCCCC----hHHHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHH
Confidence 334454 3567898866553 35788999999964 44555555555544433322 2346665544432
Q ss_pred ccCCCC-CcceEEEEEE-eCCeEEEEEeCCCCeEEEE-CCeEEEeCcc
Q 028548 136 ATSSVG-SATVIVAMLE-RNGILKVASVGDCGLRIIR-KGQITFSSSP 180 (207)
Q Consensus 136 ~~~~~g-~~Tt~va~l~-~~~~l~vanVGDSR~yllR-~g~l~~lT~d 180 (207)
...... ++|++++.+. .+++++++|+||+|+|++| ++..++.+++
T Consensus 79 ~~~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~ 126 (193)
T smart00331 79 ENGEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDD 126 (193)
T ss_pred hcCCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCC
Confidence 222233 4455455552 4668999999999999999 6777777766
No 14
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=98.87 E-value=6.6e-09 Score=91.95 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=66.9
Q ss_pred CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhc-------c---------c-------------CcccHHH----
Q 028548 82 NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-------V---------E-------------VNYDPQI---- 128 (207)
Q Consensus 82 ~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~-------~---------~-------------~~~~~~~---- 128 (207)
++.+|-++|||.|.+..-+|+.+.-+.+.+.+.+.+.. + + -....+.
T Consensus 143 ~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViG 222 (493)
T KOG1323|consen 143 DGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIG 222 (493)
T ss_pred cceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHH
Confidence 46799999999988766667776666655444322211 0 0 0001111
Q ss_pred HHHHHHHc-----------cCCCCCcceEEEEEEeCCeEEEEEeCCCCeEEEECCeEEEeCcce
Q 028548 129 LMRKAHAA-----------TSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQ 181 (207)
Q Consensus 129 ~l~~A~~~-----------~~~~g~~Tt~va~l~~~~~l~vanVGDSR~yllR~g~l~~lT~dq 181 (207)
.|+.|+.. -...|+||+++++..-+ +||++|.||||++++|+++++.+++|-
T Consensus 223 AlEsAFqemDeqiarer~~~~~~GGCtalvvi~llG-KlYvaNAGDsRAIlVrndeirplS~ef 285 (493)
T KOG1323|consen 223 ALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLG-KLYVANAGDSRAILVRNDEIRPLSKEF 285 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeecc-ceEEccCCCceEEEEecCCeeeccccc
Confidence 24444432 24578899988887765 799999999999999999999998873
No 15
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.39 E-value=3.2e-06 Score=83.09 Aligned_cols=121 Identities=16% Similarity=0.255 Sum_probs=74.2
Q ss_pred CceeEEEEEEEecCCCCCCCCCCceEEEecc--CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCcccHHH
Q 028548 51 PELSFCVGTHLIPHPNKVERGGEDAFFVSCY--NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQI 128 (207)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~R~~nEDa~~~~~~--~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~~~~~ 128 (207)
..+++.+|.+..+.+| +..+.|.+.+... +..+++|+||||....+..+|.. ..+.+.+.... ..++.+
T Consensus 548 ~~~~~~~g~a~~~k~g--~~vsGD~y~~~~l~~g~~~~~laDGmGhG~~Aa~~S~~----~~~ll~~~~~~---g~~~~~ 618 (764)
T TIGR02865 548 PKYHVSTGVARAAKDG--ELVSGDSYSFGKLSAGKYAVAISDGMGSGPEAAQESSA----CVRLLEKFLES---GFDREV 618 (764)
T ss_pred CceeehhhHHHhcCCC--CcccCceEEEEEECCCEEEEEEEcccCCCHHHHHHHHH----HHHHHHHHHHc---CCCHHH
Confidence 3456666766677666 5789999876542 34578999999954443333333 33333322221 234555
Q ss_pred HHHHHHH---ccCCCCCcceE-EEEEE-eCCeEEEEEeCCCCeEEEECCeEEEeCcc
Q 028548 129 LMRKAHA---ATSSVGSATVI-VAMLE-RNGILKVASVGDCGLRIIRKGQITFSSSP 180 (207)
Q Consensus 129 ~l~~A~~---~~~~~g~~Tt~-va~l~-~~~~l~vanVGDSR~yllR~g~l~~lT~d 180 (207)
+++.... ......+.+|+ +++++ .++++.++|+|+++.|+.|++++.+++..
T Consensus 619 ai~~lN~~L~~~~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~ 675 (764)
T TIGR02865 619 AIKTVNSILSLRSTDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSS 675 (764)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCC
Confidence 5544322 22222344454 44554 35689999999999999999998877643
No 16
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=98.09 E-value=4.1e-05 Score=61.75 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=59.2
Q ss_pred CeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCcccHHHHHHHHHHc----cCCC-CCcceEEEEEE-eCCeE
Q 028548 83 GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAA----TSSV-GSATVIVAMLE-RNGIL 156 (207)
Q Consensus 83 ~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~~----~~~~-g~~Tt~va~l~-~~~~l 156 (207)
..+++|+|++| .|+.|++++..+...+...... ..+|.++++...+. .... ...|++++.+. .++++
T Consensus 4 ~~~~~v~D~~G----hG~~aa~~~~~~~~~~~~~~~~---~~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 4 RYFIIVGDVSG----HGVSAALLSAALASAIRELLDE---GLDPEELLEALNRRLYRDLKGDNRYATACYAIIDPETGTL 76 (193)
T ss_dssp EEEEEEEEESS----SSHHHHHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTTTEE
T ss_pred EEEEEEEEecC----CCHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhhhccccceEEEEEecccceEE
Confidence 46789999998 3677777777776666554432 33477776655433 2333 34566666665 45689
Q ss_pred EEEEeCCCCeEEEEC--CeEEEe
Q 028548 157 KVASVGDCGLRIIRK--GQITFS 177 (207)
Q Consensus 157 ~vanVGDSR~yllR~--g~l~~l 177 (207)
+++|+|+++++++|+ ++...+
T Consensus 77 ~~~~aG~~~~l~~~~~~~~~~~~ 99 (193)
T PF07228_consen 77 TYANAGHPPPLLLRPGGREIEQL 99 (193)
T ss_dssp EEEEESSSEEEEEETTCTEEEEE
T ss_pred EEeCCCCCCEEEEeccccceeec
Confidence 999999999999999 444444
No 17
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=97.88 E-value=1.7e-05 Score=71.35 Aligned_cols=41 Identities=29% Similarity=0.269 Sum_probs=33.0
Q ss_pred CcceEEEEEEeCCeEEEEEeCCCCeEEEECCeEEEeCccee
Q 028548 142 SATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQE 182 (207)
Q Consensus 142 ~~Tt~va~l~~~~~l~vanVGDSR~yllR~g~l~~lT~dq~ 182 (207)
++||.+..|..+.+|+|+|.|||||++.|+|+.+-++-||.
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHK 370 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHK 370 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCC
Confidence 44444444455568999999999999999999999999953
No 18
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=96.20 E-value=0.0071 Score=54.80 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=31.9
Q ss_pred CceeEEEEEEEecCCCCCCCCCCceEEEecc---CCeEEEEeeCCCCcccc
Q 028548 51 PELSFCVGTHLIPHPNKVERGGEDAFFVSCY---NGGVIAVADGVSGWAEQ 98 (207)
Q Consensus 51 ~~~~~~~~~~~~~~~g~~R~~nEDa~~~~~~---~~~l~aVADGvGG~~~g 98 (207)
.++ +.+|+.++..+ |-++|||+-+..+ +..+|+|.|||||....
T Consensus 19 g~l-L~yg~s~MQGW---RvsqEDAHNci~~ld~~t~mF~VYDGHGG~EVa 65 (542)
T KOG0699|consen 19 GNL-LSYGCSTMQGW---RVSQEDAHNCIVDLDTDTHMFGVYDGHGGTEVA 65 (542)
T ss_pred Ccc-chhchhhhhcc---ccchhhhhcccccccCcceEEEEecCCCcHHHH
Confidence 444 66676666443 7889999966543 56899999999987653
No 19
>PRK10693 response regulator of RpoS; Provisional
Probab=82.99 E-value=23 Score=30.89 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=56.5
Q ss_pred CCceEEEec-c-CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhh--hcccCcccHHHHHHHH---HHccCCCCCcc
Q 028548 72 GEDAFFVSC-Y-NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFV--EDVEVNYDPQILMRKA---HAATSSVGSAT 144 (207)
Q Consensus 72 nEDa~~~~~-~-~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~A---~~~~~~~g~~T 144 (207)
+-|.+-+.. . +...|-++| +.||...++.+++....++..+.+.. .......+|.++++.. .......+.-|
T Consensus 150 ~GD~~d~~~l~~~~~~~~~~D-vsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~~~t 228 (303)
T PRK10693 150 PGLVLDIAALSDNDLAFYCLD-VTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFP 228 (303)
T ss_pred CccEEeeeecCCCcEEEEEEe-cCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCceee
Confidence 456553332 1 344667777 44443446677777766555333321 1111223577776544 33333333457
Q ss_pred eEEEEEEe-CCeEEEEEeCCCCeEEEECCeE
Q 028548 145 VIVAMLER-NGILKVASVGDCGLRIIRKGQI 174 (207)
Q Consensus 145 t~va~l~~-~~~l~vanVGDSR~yllR~g~l 174 (207)
.+.+++.. .+++.++|-|-...++..+++.
T Consensus 229 ~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 229 LLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred EEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 77777764 3579999999999885444433
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=50.13 E-value=10 Score=38.73 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=27.3
Q ss_pred CeEEEEEeCCCCeEEEECCeEEEeCcceeec
Q 028548 154 GILKVASVGDCGLRIIRKGQITFSSSPQEHY 184 (207)
Q Consensus 154 ~~l~vanVGDSR~yllR~g~l~~lT~dq~h~ 184 (207)
.++.+||+|+|.++++|+|+-.++|+-+.+.
T Consensus 629 ~~l~~Anvg~c~avls~ng~~~p~t~~~~~~ 659 (1081)
T KOG0618|consen 629 KTLFAANVGTCMAVLSRNGKPLPTTRSPMLE 659 (1081)
T ss_pred hhhhHhhhccchhhhhhcCCcCccccccccc
Confidence 4689999999999999999988888887555
No 21
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=34.61 E-value=3.3e+02 Score=24.21 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=62.5
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEecc--CCeEEEEeeCCCCccccCccHHHHHHHHHHHHhhhhhcccCcccHHHHHHH
Q 028548 55 FCVGTHLIPHPNKVERGGEDAFFVSCY--NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRK 132 (207)
Q Consensus 55 ~~~~~~~~~~~g~~R~~nEDa~~~~~~--~~~l~aVADGvGG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (207)
+.+++...+... -+-|.|-+... +...++|+|.+| .|+.|++.. .......+.+.. ....+|.++|+.
T Consensus 149 ~~i~~~~~~a~~----vGGD~yd~~~~~~~~~~i~I~DvsG----~Gv~aal~m-~~~~~~~~~~~~-~~~~~p~~~l~~ 218 (367)
T COG2208 149 IDIEAILVPASE----VGGDYYDFIQLGEKRLRIGIGDVSG----KGVPAALLM-LMPKLALRLLLE-SGPLDPADVLET 218 (367)
T ss_pred ccceeeEeEHHH----cCCceEEEEEECCcEEEEEEEeccC----CCHHHHHHH-HHHHHHHHHhhh-cccCCHHHHHHH
Confidence 334444444332 46776644332 346789999987 356666652 222222222222 124677777655
Q ss_pred H---HHccCCC-CCcceEEEEEEe-CCeEEEEEeCCCCeEEEECCe
Q 028548 133 A---HAATSSV-GSATVIVAMLER-NGILKVASVGDCGLRIIRKGQ 173 (207)
Q Consensus 133 A---~~~~~~~-g~~Tt~va~l~~-~~~l~vanVGDSR~yllR~g~ 173 (207)
. +...... .-.|.+.++++. .+++..+|+|=--.++++.++
T Consensus 219 ~n~~~~~~~~~~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~ 264 (367)
T COG2208 219 LNRVLKQNLEEDMFVTLFLGVYDLDSGELTYSNAGHEPALILSADG 264 (367)
T ss_pred HHHHHHhcccCCcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCC
Confidence 3 3333333 335666666654 568999999999999998754
No 22
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=27.37 E-value=1.5e+02 Score=25.65 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=27.9
Q ss_pred ceEEEEEEe--CCeEEEEEeCCCCeEEEE-CCeEEEeCcceeecCCCceeccc
Q 028548 144 TVIVAMLER--NGILKVASVGDCGLRIIR-KGQITFSSSPQEHYFDCPYQLSS 193 (207)
Q Consensus 144 Tt~va~l~~--~~~l~vanVGDSR~yllR-~g~l~~lT~dq~h~f~~p~Ql~~ 193 (207)
..+...+.. ++.++|+|+| +|+. ++.+.++=+ ..|.-|||+..
T Consensus 170 slISV~~h~~d~~~lFvGH~G----VLv~~~dg~LFiEK---laf~ePYQa~k 215 (250)
T PF14133_consen 170 SLISVFLHDPDDNSLFVGHTG----VLVPTKDGYLFIEK---LAFEEPYQATK 215 (250)
T ss_pred EEEEEEEEcCCCCeEEeeeEE----EEEEcCCcEEEEEe---eCCCCCceeEE
Confidence 334444443 5689999999 5554 344555543 67889999865
No 23
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.50 E-value=1.5e+02 Score=23.41 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=29.4
Q ss_pred EEEEEeCCeEEEEEeCCCCeEEEEC--CeEEEeCcceeec----CCCceecccCC
Q 028548 147 VAMLERNGILKVASVGDCGLRIIRK--GQITFSSSPQEHY----FDCPYQLSSEA 195 (207)
Q Consensus 147 va~l~~~~~l~vanVGDSR~yllR~--g~l~~lT~dq~h~----f~~p~Ql~~~~ 195 (207)
+.+...++.+|+++ -.|++.. -.++.+|.||+|. -+++--.|+-.
T Consensus 16 Tw~~~~e~~~w~as----afYvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~ 66 (145)
T COG3787 16 TWCVQQEGELWCAS----AFYVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVA 66 (145)
T ss_pred eeeeecCCceeeee----eEEEEcccceEEEEEeccchhHHHhhCCCCceeeEec
Confidence 33444555678775 4899964 4589999999986 34555555443
No 24
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=22.48 E-value=2e+02 Score=18.38 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=25.2
Q ss_pred EEEEEeCCeEEEEEeCCCCeEEEECCeEEEeCcceeecC
Q 028548 147 VAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYF 185 (207)
Q Consensus 147 va~l~~~~~l~vanVGDSR~yllR~g~l~~lT~dq~h~f 185 (207)
+..+..+ ++.+. ++|. .+.++.|..+++-..+.|.+
T Consensus 22 ~~~vl~G-~~~~~-~~~~-~~~l~~Gd~~~i~~~~~H~~ 57 (71)
T PF07883_consen 22 FFYVLSG-EGTLT-VDGE-RVELKPGDAIYIPPGVPHQV 57 (71)
T ss_dssp EEEEEES-EEEEE-ETTE-EEEEETTEEEEEETTSEEEE
T ss_pred EEEEEEC-CEEEE-EccE-EeEccCCEEEEECCCCeEEE
Confidence 3344444 67766 7766 78889999999988866654
No 25
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=22.26 E-value=2.1e+02 Score=20.93 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=17.6
Q ss_pred eCCCCeEEEECCeEEEeC---cceeecCCCc
Q 028548 161 VGDCGLRIIRKGQITFSS---SPQEHYFDCP 188 (207)
Q Consensus 161 VGDSR~yllR~g~l~~lT---~dq~h~f~~p 188 (207)
.|..++.+..+|.++... +.-|.+|+.|
T Consensus 86 ~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~P 116 (116)
T cd00028 86 NGNYVLVLLDDGNLVLYDSDGNFLWQSFDYP 116 (116)
T ss_pred CCceEEEEeCCCCEEEECCCCCEEEcCCCCC
Confidence 355666666777777666 4455666665
No 26
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=21.65 E-value=1.6e+02 Score=16.81 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.7
Q ss_pred CCeEEEEEeCCCCeEEEEC
Q 028548 153 NGILKVASVGDCGLRIIRK 171 (207)
Q Consensus 153 ~~~l~vanVGDSR~yllR~ 171 (207)
+++||++|-|+..+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 4579999999999998864
Done!