BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028549
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 44  IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
           +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  RA  
Sbjct: 154 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 212

Query: 104 ESEKS 108
           E+EKS
Sbjct: 213 EAEKS 217


>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 44  IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
           +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  RA  
Sbjct: 154 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 212

Query: 104 ESEKS 108
           E+EKS
Sbjct: 213 EAEKS 217


>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 27.3 bits (59), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 44  IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
           +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  RA  
Sbjct: 154 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 212

Query: 104 ESEKS 108
           E+EKS
Sbjct: 213 EAEKS 217


>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 27.3 bits (59), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 44  IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
           +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  RA  
Sbjct: 154 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 212

Query: 104 ESEKS 108
           E+EKS
Sbjct: 213 EAEKS 217


>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
          Length = 1150

 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 44  IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
           +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  RA  
Sbjct: 131 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 189

Query: 104 ESEKS 108
           E+EKS
Sbjct: 190 EAEKS 194


>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
          Length = 1150

 Score = 27.3 bits (59), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 44  IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
           +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  RA  
Sbjct: 131 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 189

Query: 104 ESEKS 108
           E+EKS
Sbjct: 190 EAEKS 194


>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
          Length = 1150

 Score = 27.3 bits (59), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 44  IPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
           +P  P  D P +S  LA  + A EA  P   K+T G   +   + R E+E   +  RA  
Sbjct: 131 LPVIPGTDGPIKSYELAK-EFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS 189

Query: 104 ESEKS 108
           E+EKS
Sbjct: 190 EAEKS 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.121    0.322 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,235,360
Number of Sequences: 62578
Number of extensions: 131391
Number of successful extensions: 247
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 12
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 49 (23.5 bits)