BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028549
         (207 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1
          Length = 198

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 171/212 (80%), Gaps = 21/212 (9%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDV-ADDKTVI-PS--PPAEDK--PE 54
           MAE E KK+E     +P PP      AP   E PK+V AD+K ++ P+  PPAE+K  P+
Sbjct: 1   MAELEAKKVEI---VDPAPP------APGPVEAPKEVVADEKAIVAPALPPPAEEKEKPD 51

Query: 55  ESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENN 113
           +SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AEN 
Sbjct: 52  DSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAEN- 106

Query: 114 RAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMI 173
           +A KK+S+I +WENS+KA +EAELKK+EEQLEKKKAEY EKMKNK+AL+HKEAEEKRAMI
Sbjct: 107 KAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMI 166

Query: 174 EAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           EAKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct: 167 EAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198


>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana
           GN=At3g61260 PE=1 SV=1
          Length = 212

 Score =  194 bits (493), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 133/171 (77%), Gaps = 5/171 (2%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EK
Sbjct: 47  KDVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEK 102

Query: 95  RISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEK 154
           R+S +RAWEESEKS+AEN +A KK++ + +WENS+KAAVEA+LKKIEEQLEKKKAEY E+
Sbjct: 103 RLSFVRAWEESEKSKAEN-KAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAER 161

Query: 155 MKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 205
           MKNK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK    CF
Sbjct: 162 MKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212


>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1
          Length = 190

 Score =  177 bits (450), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 149/206 (72%), Gaps = 17/206 (8%)

Query: 1   MAEEE-PKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKAL 59
           MAEE+   K++ E+P    P     PA       P +VAD+K  I +PP    P ESKAL
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPA-------PVEVADEK--IHNPP----PVESKAL 47

Query: 60  AVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKL 119
           AVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN RA KK+
Sbjct: 48  AVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAEN-RAQKKI 104

Query: 120 SSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGE 179
           S + +WENS+KAAVEA+L+KIEE+LEKKKA+Y EKMKNK+A IHK AEEKRAM+EAK+GE
Sbjct: 105 SDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGE 164

Query: 180 DLLKAEELAAKYRATGSAPKKLLSCF 205
           +LLKAEE+ AKYRATG  PK    CF
Sbjct: 165 ELLKAEEMGAKYRATGVVPKATCGCF 190


>sp|A0R006|WAG31_MYCS2 Cell wall synthesis protein Wag31 OS=Mycobacterium smegmatis
           (strain ATCC 700084 / mc(2)155) GN=wag31 PE=1 SV=1
          Length = 272

 Score = 34.7 bits (78), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 16/153 (10%)

Query: 12  ETPTEPPPPPSTEPAAPAA--AEPPKDVADDKTVIPSPPAEDKPEESKALA---VVDKAP 66
           E P +P  P S + A  AA      +D AD  T      A+    +++A A   V D   
Sbjct: 96  EAPAQPAAPQSEDTAVRAARVLSLAQDTADRLTSTAKAEADKLLSDARAQAEAMVSDARQ 155

Query: 67  EAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWE 126
            AE    E         DA+LA  +T     L +A E+++  QA+  R H   S I+   
Sbjct: 156 TAETTVSEARQRA----DAMLADAQTRSEAQLRQAQEKADALQADAERKH---SEIMGTI 208

Query: 127 NSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKM 159
           N ++  +E  L    EQL   + EY  ++K  +
Sbjct: 209 NQQRTVLEGRL----EQLRTFEREYRTRLKTYL 237


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.301    0.119    0.319 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,024,427
Number of Sequences: 539616
Number of extensions: 3660817
Number of successful extensions: 52648
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 2667
Number of HSP's that attempted gapping in prelim test: 34852
Number of HSP's gapped (non-prelim): 13806
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 58 (26.9 bits)