Query 028549
Match_columns 207
No_of_seqs 135 out of 216
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 13:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03763 Remorin_C: Remorin, C 100.0 7.7E-38 1.7E-42 246.2 15.0 110 92-202 2-111 (111)
2 PF03766 Remorin_N: Remorin, N 99.3 4.2E-12 9.1E-17 90.4 3.8 52 35-90 5-57 (57)
3 PF03763 Remorin_C: Remorin, C 96.7 0.045 9.8E-07 43.5 11.7 82 90-172 22-103 (111)
4 KOG4661 Hsp27-ERE-TATA-binding 69.9 31 0.00068 35.4 9.1 84 90-174 609-705 (940)
5 PRK09174 F0F1 ATP synthase sub 65.8 89 0.0019 27.0 12.4 73 107-180 78-150 (204)
6 PRK13454 F0F1 ATP synthase sub 57.8 1.1E+02 0.0025 25.6 10.5 66 107-173 56-121 (181)
7 TIGR01933 hflK HflK protein. H 55.5 1.4E+02 0.003 25.8 9.9 60 133-193 155-214 (261)
8 cd03404 Band_7_HflK Band_7_Hfl 52.0 1.2E+02 0.0026 26.1 8.7 51 143-193 191-241 (266)
9 PF07352 Phage_Mu_Gam: Bacteri 42.6 1.4E+02 0.0029 24.2 7.1 42 101-143 13-54 (149)
10 PRK07353 F0F1 ATP synthase sub 39.4 1.8E+02 0.004 22.6 10.3 18 134-151 56-73 (140)
11 PF10376 Mei5: Double-strand r 39.0 2.8E+02 0.006 24.6 10.2 57 119-176 130-186 (221)
12 PRK14474 F0F1 ATP synthase sub 38.8 2.8E+02 0.0061 24.6 10.3 13 100-112 43-55 (250)
13 PRK13455 F0F1 ATP synthase sub 36.3 2.5E+02 0.0054 23.3 10.5 59 114-173 59-117 (184)
14 PRK13453 F0F1 ATP synthase sub 35.4 2.6E+02 0.0055 23.1 10.3 6 107-112 43-48 (173)
15 PRK14471 F0F1 ATP synthase sub 34.9 2.5E+02 0.0053 22.8 10.3 8 102-109 48-55 (164)
16 PF11559 ADIP: Afadin- and alp 33.4 1.3E+02 0.0029 24.0 5.7 12 116-127 83-94 (151)
17 PRK08475 F0F1 ATP synthase sub 33.3 2.8E+02 0.006 22.9 10.3 7 106-112 46-52 (167)
18 PRK14475 F0F1 ATP synthase sub 33.1 2.7E+02 0.0059 22.8 10.5 16 137-152 64-79 (167)
19 PRK14472 F0F1 ATP synthase sub 31.3 3E+02 0.0064 22.6 10.3 75 122-196 43-120 (175)
20 PRK14475 F0F1 ATP synthase sub 31.1 3E+02 0.0064 22.6 10.2 10 101-110 49-58 (167)
21 KOG3654 Uncharacterized CH dom 30.0 1.7E+02 0.0036 29.9 6.6 41 125-176 397-439 (708)
22 PRK13460 F0F1 ATP synthase sub 28.6 3.3E+02 0.0072 22.4 10.3 19 137-155 70-88 (173)
23 PRK07352 F0F1 ATP synthase sub 27.6 3.5E+02 0.0075 22.2 10.3 12 137-148 73-84 (174)
24 COG5269 ZUO1 Ribosome-associat 27.5 4.7E+02 0.01 24.9 8.8 56 114-169 237-292 (379)
25 CHL00118 atpG ATP synthase CF0 27.2 3.4E+02 0.0073 22.0 10.2 75 122-196 47-124 (156)
26 KOG1103 Predicted coiled-coil 26.8 6.3E+02 0.014 24.9 10.3 47 123-169 155-211 (561)
27 PRK13665 hypothetical protein; 26.6 1.7E+02 0.0037 27.5 5.7 25 128-152 234-258 (316)
28 PRK06231 F0F1 ATP synthase sub 26.3 4.2E+02 0.0091 22.7 10.3 31 133-163 98-128 (205)
29 PRK10930 FtsH protease regulat 26.2 4.3E+02 0.0093 25.5 8.6 57 136-192 253-309 (419)
30 PF12127 YdfA_immunity: SigmaW 26.0 1.7E+02 0.0036 27.6 5.6 24 128-151 229-252 (316)
31 PF00430 ATP-synt_B: ATP synth 23.7 3.3E+02 0.007 20.6 9.2 42 133-174 49-90 (132)
32 PF11875 DUF3395: Domain of un 23.4 3.9E+02 0.0085 22.0 6.9 39 142-180 9-47 (151)
33 KOG4055 Uncharacterized conser 23.4 4.9E+02 0.011 23.2 7.7 32 151-182 108-139 (213)
34 TIGR03321 alt_F1F0_F0_B altern 22.8 5.1E+02 0.011 22.5 11.1 7 102-108 45-51 (246)
35 KOG0577 Serine/threonine prote 22.4 7.6E+02 0.016 26.3 9.8 81 100-181 816-900 (948)
36 PF12856 Apc9: Anaphase-promot 21.7 69 0.0015 25.3 2.0 23 94-117 44-66 (100)
37 PRK06569 F0F1 ATP synthase sub 21.6 5E+02 0.011 21.9 12.3 62 114-176 42-103 (155)
38 PF04888 SseC: Secretion syste 21.2 2.2E+02 0.0048 25.3 5.3 55 136-197 4-58 (306)
39 KOG2129 Uncharacterized conser 21.1 4.7E+02 0.01 26.2 7.8 31 139-169 147-177 (552)
No 1
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=100.00 E-value=7.7e-38 Score=246.18 Aligned_cols=110 Identities=55% Similarity=0.752 Sum_probs=106.6
Q ss_pred HHHHHHhHHHHHHHHHhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 92 TEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRA 171 (207)
Q Consensus 92 ~Ekr~s~a~AWEeaEkaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA 171 (207)
.+.+++++++||+++++|+++ ||+|++++|++|||+||++|+++|+++|++||++|++++|||+|+|++||++|+++|+
T Consensus 2 ~~~~~a~a~aWe~ae~aK~~~-r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra 80 (111)
T PF03763_consen 2 KEEVEAKADAWEEAEKAKINN-RYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRA 80 (111)
T ss_pred cHHHHhHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhcCCCCCCCc
Q 028549 172 MIEAKRGEDLLKAEELAAKYRATGSAPKKLL 202 (207)
Q Consensus 172 ~aEakr~ee~~Ka~EkA~k~R~TGk~P~~~~ 202 (207)
+++++|+++++++.++|++||+||++|++||
T Consensus 81 ~aea~r~~~~~k~~ekA~~~R~tG~~P~~~f 111 (111)
T PF03763_consen 81 AAEARRGEEIAKAEEKAAKIRATGKVPSKCF 111 (111)
T ss_pred HHHHHHhhHHHhHHHHHHHHHhCCCCCcccC
Confidence 9999999999999999999999999998643
No 2
>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=99.26 E-value=4.2e-12 Score=90.36 Aligned_cols=52 Identities=67% Similarity=1.069 Sum_probs=44.6
Q ss_pred CCccccCCCCCCCCCCCCCccccceeeecCC-CCCCCCCCCCCCCCCchhHHHHHHH
Q 028549 35 KDVADDKTVIPSPPAEDKPEESKALAVVDKA-PEAEPPAGEKSTEGSVNRDAVLARV 90 (207)
Q Consensus 35 ~~~~~~~~~~p~p~~~~~~~~sk~l~~v~~~-~~~~~~~~~~~~~gs~~rd~~l~~v 90 (207)
+|++++++++|||. +.+.||||||+||++. ++ +..+++++||+|||++|++|
T Consensus 5 ~dva~ek~~~PpP~-~~k~ddSKAl~vVek~~~e---pa~eK~s~GS~dRDa~LA~v 57 (57)
T PF03766_consen 5 KDVAEEKSVIPPPA-EEKPDDSKALVVVEKKVPE---PAEEKPSEGSIDRDAALARV 57 (57)
T ss_pred hhhccccCCCCCCC-CCCCCccceEEEeeccCCC---ccccccCCCcchhhhhhhcC
Confidence 78999999988775 6778999999999985 45 46678889999999999985
No 3
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=96.71 E-value=0.045 Score=43.45 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=64.8
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 90 VETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEK 169 (207)
Q Consensus 90 v~~Ekr~s~a~AWEeaEkaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEek 169 (207)
-..++.++.|.+||...++|+.. ..++.+.++.-=-..---+..-.|..+..+.|.+|+.+..+-.+.+..+..+|.-.
T Consensus 22 ~r~~ree~~I~aWEn~qkaKaea-~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~ 100 (111)
T PF03763_consen 22 NRYEREEAKIQAWENLQKAKAEA-EMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKI 100 (111)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 34567799999999999999999 88888877543222222344556677889999999999999999999999999888
Q ss_pred HHH
Q 028549 170 RAM 172 (207)
Q Consensus 170 RA~ 172 (207)
|..
T Consensus 101 R~t 103 (111)
T PF03763_consen 101 RAT 103 (111)
T ss_pred HhC
Confidence 753
No 4
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=69.94 E-value=31 Score=35.45 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=53.5
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Q 028549 90 VETEKRISLIRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIE-------------EQLEKKKAEYVEKMK 156 (207)
Q Consensus 90 v~~Ekr~s~a~AWEeaEkaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE-------------~KLEkkRA~a~EKm~ 156 (207)
+.++++.-.-..-+-.+...+.. +-.+++..-.+||...+...++++-+|| +.||++|.+.++--.
T Consensus 609 ~sfdk~kE~Rr~Re~eer~RirE-~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEreRM~ve~eRr 687 (940)
T KOG4661|consen 609 RSFDKRKEERRRREAEERQRIRE-EREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEEERR 687 (940)
T ss_pred hhHHhhhhHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444443334444457777777 7778888888999999888888777666 345555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028549 157 NKMALIHKEAEEKRAMIE 174 (207)
Q Consensus 157 NKiA~a~kkAEekRA~aE 174 (207)
..-.+||+.-++-|-+-+
T Consensus 688 ~eqeRihreReelRrqqe 705 (940)
T KOG4661|consen 688 DEQERIHREREELRRQQE 705 (940)
T ss_pred chhhhhhhhHHHHhhccc
Confidence 555666666665554444
No 5
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=65.83 E-value=89 Score=27.01 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=42.3
Q ss_pred HhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028549 107 KSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGED 180 (207)
Q Consensus 107 kaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEakr~ee 180 (207)
..++...|.++-...|..=++. +..++..+...|.+|..-|.++.+-+.+-...++..++..+..+++.-...
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~~-k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~ 150 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAARL-KQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKK 150 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443555555555554443 445666677777777777777776666666666665555555555443333
No 6
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=57.82 E-value=1.1e+02 Score=25.58 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=29.6
Q ss_pred HhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 107 KSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMI 173 (207)
Q Consensus 107 kaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~a 173 (207)
..++...|.++-...+..=++. +..++..+...|.+|.+-|.++.+-+.+-...+.+..++.+..+
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~-~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A 121 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEEL-KQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKA 121 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433332 23444555555555555555555544444444444444433333
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=55.53 E-value=1.4e+02 Score=25.81 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 028549 133 VEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRA 193 (207)
Q Consensus 133 AEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEakr~ee~~Ka~EkA~k~R~ 193 (207)
.+..+.- +...++.++++...-...+..+...|+..+..+++.+..+..+++-.|..++.
T Consensus 155 ~~~~~~a-~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~ 214 (261)
T TIGR01933 155 FDDVIIA-REDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTK 214 (261)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3444433 33346677777555555567777788877788887777777777666666543
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=52.02 E-value=1.2e+02 Score=26.13 Aligned_cols=51 Identities=20% Similarity=0.123 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 028549 143 QLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRA 193 (207)
Q Consensus 143 KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEakr~ee~~Ka~EkA~k~R~ 193 (207)
+.++.++++...-...++.++..|+..+..+++.+....++++-.+..|+.
T Consensus 191 ~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~ 241 (266)
T cd03404 191 DRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFES 241 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345555555333344668888888999999999999999998888887764
No 9
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=42.57 E-value=1.4e+02 Score=24.22 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHH
Q 028549 101 AWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQ 143 (207)
Q Consensus 101 AWEeaEkaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE~K 143 (207)
+.-..+...+.+ .++.+.+.|..|-..+.+.....+..++.-
T Consensus 13 ~~l~~~~~~i~~-~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~ 54 (149)
T PF07352_consen 13 AELQREIARIEA-EANDEIARIKEWYEAEIAPLQNRIEYLEGL 54 (149)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666 777777777777776666666666555533
No 10
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=39.40 E-value=1.8e+02 Score=22.64 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028549 134 EAELKKIEEQLEKKKAEY 151 (207)
Q Consensus 134 EA~mrKiE~KLEkkRA~a 151 (207)
+..+...+.+|..-|.++
T Consensus 56 ~~~~~~~e~~L~~a~~ea 73 (140)
T PRK07353 56 EKLEAQYEQQLASARKQA 73 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 11
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=39.02 E-value=2.8e+02 Score=24.58 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=47.7
Q ss_pred hhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 119 LSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAK 176 (207)
Q Consensus 119 eakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEak 176 (207)
+-.++.|+. .|++.+.+++..++.|.+...--+.+++|.+..++..-.+||...+..
T Consensus 130 ~~~~~el~~-ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~ 186 (221)
T PF10376_consen 130 ELKQQELEE-EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEA 186 (221)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 455677776 677889999999999999999999999999999999999999776543
No 12
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=38.78 E-value=2.8e+02 Score=24.57 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhhh
Q 028549 100 RAWEESEKSQAEN 112 (207)
Q Consensus 100 ~AWEeaEkaK~~n 112 (207)
...++++..+...
T Consensus 43 ~~l~~Ae~~~~eA 55 (250)
T PRK14474 43 NRWQDAEQRQQEA 55 (250)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555544433
No 13
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=36.28 E-value=2.5e+02 Score=23.27 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=29.0
Q ss_pred HHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 114 RAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMI 173 (207)
Q Consensus 114 R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~a 173 (207)
|-++-...|..=+. .+..|+..+...+.+|..-|.++.+-+.+-...++...++.+..+
T Consensus 59 R~~~I~~~l~~Ae~-~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a 117 (184)
T PRK13455 59 RAEGIRSELEEARA-LREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADL 117 (184)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444333 234455555555566666655555555544444444444444333
No 14
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=35.42 E-value=2.6e+02 Score=23.13 Aligned_cols=6 Identities=0% Similarity=-0.041 Sum_probs=2.2
Q ss_pred Hhhhhh
Q 028549 107 KSQAEN 112 (207)
Q Consensus 107 kaK~~n 112 (207)
..++..
T Consensus 43 i~~~l~ 48 (173)
T PRK13453 43 LKDVMD 48 (173)
T ss_pred HHHHHH
Confidence 333333
No 15
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=34.89 E-value=2.5e+02 Score=22.77 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 028549 102 WEESEKSQ 109 (207)
Q Consensus 102 WEeaEkaK 109 (207)
.++++..+
T Consensus 48 l~~A~~~~ 55 (164)
T PRK14471 48 LASAEEAR 55 (164)
T ss_pred HHHHHHHH
Confidence 44444333
No 16
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.37 E-value=1.3e+02 Score=24.01 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=4.8
Q ss_pred HHhhhhHHhHHh
Q 028549 116 HKKLSSIVSWEN 127 (207)
Q Consensus 116 qreeakI~aWEn 127 (207)
...+..+.++++
T Consensus 83 ~~~ere~~~~~~ 94 (151)
T PF11559_consen 83 EELERELASAEE 94 (151)
T ss_pred HHHHHHHHHHHH
Confidence 333334444443
No 17
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=33.28 E-value=2.8e+02 Score=22.92 Aligned_cols=7 Identities=0% Similarity=-0.282 Sum_probs=2.9
Q ss_pred HHhhhhh
Q 028549 106 EKSQAEN 112 (207)
Q Consensus 106 EkaK~~n 112 (207)
...++..
T Consensus 46 Pi~~~l~ 52 (167)
T PRK08475 46 PLKNFYK 52 (167)
T ss_pred HHHHHHH
Confidence 3444444
No 18
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=33.10 E-value=2.7e+02 Score=22.77 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 028549 137 LKKIEEQLEKKKAEYV 152 (207)
Q Consensus 137 mrKiE~KLEkkRA~a~ 152 (207)
+...+.+|..-|.++-
T Consensus 64 ~~~~e~~L~~A~~ea~ 79 (167)
T PRK14475 64 LADVKAEREEAERQAA 79 (167)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 19
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=31.26 E-value=3e+02 Score=22.63 Aligned_cols=75 Identities=21% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHhHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCC
Q 028549 122 IVSWENSRKAAVEAELKKIE---EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGS 196 (207)
Q Consensus 122 I~aWEn~qKAKAEA~mrKiE---~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEakr~ee~~Ka~EkA~k~R~TGk 196 (207)
|...=+..+.+....|...+ .+.+.....|..++.+--..++.+-++.+..++..+.+....+.+.+..+....+
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~ 120 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAK 120 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 20
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=31.07 E-value=3e+02 Score=22.56 Aligned_cols=10 Identities=10% Similarity=0.352 Sum_probs=4.2
Q ss_pred HHHHHHHhhh
Q 028549 101 AWEESEKSQA 110 (207)
Q Consensus 101 AWEeaEkaK~ 110 (207)
.-++++..+-
T Consensus 49 ~l~~Ae~~k~ 58 (167)
T PRK14475 49 ELDEAQRLRE 58 (167)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 21
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=29.96 E-value=1.7e+02 Score=29.93 Aligned_cols=41 Identities=34% Similarity=0.442 Sum_probs=22.7
Q ss_pred HHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 125 WENSRKAAVEAELKK--IEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAK 176 (207)
Q Consensus 125 WEn~qKAKAEA~mrK--iE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEak 176 (207)
.|..|+-.-|+.+|| +|.+.|.+|- .++++|+|-|+-.|..
T Consensus 397 lekqqrraeear~rkqqleae~e~kre-----------earrkaeeer~~keee 439 (708)
T KOG3654|consen 397 LEKQQRRAEEARRRKQQLEAEKEQKRE-----------EARRKAEEERAPKEEE 439 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhHhhhcchhhh
Confidence 345555555566655 3445555554 3556667666665544
No 22
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=28.62 E-value=3.3e+02 Score=22.35 Aligned_cols=19 Identities=32% Similarity=0.323 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028549 137 LKKIEEQLEKKKAEYVEKM 155 (207)
Q Consensus 137 mrKiE~KLEkkRA~a~EKm 155 (207)
+...+.+|..-+.++.+-+
T Consensus 70 ~~e~e~~l~~a~~ea~~ii 88 (173)
T PRK13460 70 LKDYEARLNSAKDEANAIV 88 (173)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444333333333
No 23
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=27.61 E-value=3.5e+02 Score=22.22 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 028549 137 LKKIEEQLEKKK 148 (207)
Q Consensus 137 mrKiE~KLEkkR 148 (207)
+...+.+|..-|
T Consensus 73 ~~~~~~~L~~a~ 84 (174)
T PRK07352 73 LAEAQQKLAQAQ 84 (174)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 24
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=4.7e+02 Score=24.87 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 114 RAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEK 169 (207)
Q Consensus 114 R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEek 169 (207)
--.+++.+|..||-.--+.+++.+...-..-++.|+...-.-.--++.+.++|-|-
T Consensus 237 EqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~ 292 (379)
T COG5269 237 EQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEV 292 (379)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHH
Confidence 34577888999998877666555443322223555555555555555555555443
No 25
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=27.20 E-value=3.4e+02 Score=21.97 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHhHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCC
Q 028549 122 IVSWENSRKAAVEAELKKIE---EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGS 196 (207)
Q Consensus 122 I~aWEn~qKAKAEA~mrKiE---~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEakr~ee~~Ka~EkA~k~R~TGk 196 (207)
|...=+..+.+....+...+ .+.+..+..|.+++.+--..++.+-+..+..++..+.+-...+.+.+..+...++
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~ 124 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEAT 124 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 26
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=26.76 E-value=6.3e+02 Score=24.93 Aligned_cols=47 Identities=32% Similarity=0.273 Sum_probs=37.4
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 028549 123 VSWENSRKAAVEAELKKIEEQLEKKKAEYV----------EKMKNKMALIHKEAEEK 169 (207)
Q Consensus 123 ~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~----------EKm~NKiA~a~kkAEek 169 (207)
..+|-.++-|+|-.-+|+++.|+..|.+-. .++.||++....+|++-
T Consensus 155 iEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei 211 (561)
T KOG1103|consen 155 IEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEI 211 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 468889999999999999999987765532 46778888888888764
No 27
>PRK13665 hypothetical protein; Provisional
Probab=26.55 E-value=1.7e+02 Score=27.47 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 128 SRKAAVEAELKKIEEQLEKKKAEYV 152 (207)
Q Consensus 128 ~qKAKAEA~mrKiE~KLEkkRA~a~ 152 (207)
+|--+||+.++-.+.|.|.+|+-+.
T Consensus 234 Lq~dQAEADk~iAqAkAEeRRAmAv 258 (316)
T PRK13665 234 LQTDQAEADKRIAQAKAEERRAMAV 258 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677776666666666665544
No 28
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=26.26 E-value=4.2e+02 Score=22.74 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 133 VEAELKKIEEQLEKKKAEYVEKMKNKMALIH 163 (207)
Q Consensus 133 AEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~ 163 (207)
|+..+...+.+|+.-|.++.+-+.+-...+.
T Consensus 98 A~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe 128 (205)
T PRK06231 98 AQQLLENAKQRHENALAQAKEIIDQANYEAL 128 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544444443333333
No 29
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=26.18 E-value=4.3e+02 Score=25.50 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 028549 136 ELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYR 192 (207)
Q Consensus 136 ~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEakr~ee~~Ka~EkA~k~R 192 (207)
.+...+...++.+.++...-..-+..++..|+.....+++.+...+++++-.|+.|.
T Consensus 253 ~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~ 309 (419)
T PRK10930 253 DAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFA 309 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344444555566676666556666789999999999999999999999887776543
No 30
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=26.03 E-value=1.7e+02 Score=27.60 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 128 SRKAAVEAELKKIEEQLEKKKAEY 151 (207)
Q Consensus 128 ~qKAKAEA~mrKiE~KLEkkRA~a 151 (207)
+|--+||+.++-.+.|.|.+|+-+
T Consensus 229 Lq~dQAeADk~iAqAkAEeRRA~A 252 (316)
T PF12127_consen 229 LQTDQAEADKRIAQAKAEERRAMA 252 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666655555555555433
No 31
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=23.75 E-value=3.3e+02 Score=20.59 Aligned_cols=42 Identities=31% Similarity=0.275 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 133 VEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIE 174 (207)
Q Consensus 133 AEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aE 174 (207)
++..+...+.+|...|..+.+-+.+-...+....+..+..++
T Consensus 49 a~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~ 90 (132)
T PF00430_consen 49 AEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAE 90 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433333
No 32
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=23.39 E-value=3.9e+02 Score=21.98 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028549 142 EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGED 180 (207)
Q Consensus 142 ~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEakr~ee 180 (207)
.++++.|....+.|..+.+.+...-+.|+..++.++..+
T Consensus 9 ~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~r~~~~E 47 (151)
T PF11875_consen 9 REIEEQREKNKEEIAEKRAEAESAIELMKETAERKQRKE 47 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555554444
No 33
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.37 E-value=4.9e+02 Score=23.22 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028549 151 YVEKMKNKMALIHKEAEEKRAMIEAKRGEDLL 182 (207)
Q Consensus 151 a~EKm~NKiA~a~kkAEekRA~aEakr~ee~~ 182 (207)
+.+-|+.++..-++.||++-|.-.++|..+-.
T Consensus 108 ~daefq~r~ek~~kaaEeKTaKKRaKRqk~Kq 139 (213)
T KOG4055|consen 108 LDAEFQIRLEKNQKAAEEKTAKKRAKRQKKKQ 139 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666665555544433
No 34
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=22.83 E-value=5.1e+02 Score=22.54 Aligned_cols=7 Identities=0% Similarity=0.288 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 028549 102 WEESEKS 108 (207)
Q Consensus 102 WEeaEka 108 (207)
.++++..
T Consensus 45 l~~Ae~~ 51 (246)
T TIGR03321 45 LADADTK 51 (246)
T ss_pred HHHHHHH
Confidence 3444333
No 35
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.42 E-value=7.6e+02 Score=26.30 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 100 RAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLE----KKKAEYVEKMKNKMALIHKEAEEKRAMIEA 175 (207)
Q Consensus 100 ~AWEeaEkaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE~KLE----kkRA~a~EKm~NKiA~a~kkAEekRA~aEa 175 (207)
+.|.++|---... ..+.+..-+.++.+.-|+.++.+..+.=.+|| -.|+-+.+||-..++.++..--+.--+...
T Consensus 816 de~qe~E~q~l~~-ql~qEle~l~ayq~k~k~~~e~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rserir~l~e 894 (948)
T KOG0577|consen 816 DEAQEAECQVLRE-QLEQELELLNAYQSKIKMQAEEQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSERIRSLLE 894 (948)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHHHHHHhh
Confidence 6788888888888 89999999999999999988877655544444 567888888888887776554444335555
Q ss_pred HhhhhH
Q 028549 176 KRGEDL 181 (207)
Q Consensus 176 kr~ee~ 181 (207)
++..++
T Consensus 895 r~~~e~ 900 (948)
T KOG0577|consen 895 RHAREI 900 (948)
T ss_pred hhHHHH
Confidence 544443
No 36
>PF12856 Apc9: Anaphase-promoting complex subunit 9; InterPro: IPR024274 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. All APC subunits are members of the cullin family proteins, which bind to a ring-finger subunit via a conserved cullin domain [].The APC can be divided in four parts, the third of which is a tetratricopeptide repeat arm (TPR) that contains multiple subunits, including Apc9 []. This entry represents Apc9, one of the subunits of the anaphase-promoting complex.
Probab=21.72 E-value=69 Score=25.30 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=17.2
Q ss_pred HHHHhHHHHHHHHHhhhhhHHHHH
Q 028549 94 KRISLIRAWEESEKSQAENNRAHK 117 (207)
Q Consensus 94 kr~s~a~AWEeaEkaK~~n~R~qr 117 (207)
-++|+|.+|+.+|++=.+- =|++
T Consensus 44 l~eSkI~~~l~sEra~h~l-iFhk 66 (100)
T PF12856_consen 44 LRESKIKAWLSSERAAHCL-IFHK 66 (100)
T ss_pred HHHHHHHHHHHHHHHhcce-eccc
Confidence 5899999999999865443 3443
No 37
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=21.59 E-value=5e+02 Score=21.91 Aligned_cols=62 Identities=21% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 114 RAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAK 176 (207)
Q Consensus 114 R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEak 176 (207)
|.++-...|..=++ .+..++..+...|..|..-|.++.+--......+...++..|+.+++.
T Consensus 42 R~~~I~~~L~~Ae~-~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 42 RQTNIQDNITQADT-LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444 344555566666666666666666655555666666666666666665
No 38
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=21.22 E-value=2.2e+02 Score=25.32 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCC
Q 028549 136 ELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSA 197 (207)
Q Consensus 136 ~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEakr~ee~~Ka~EkA~k~R~TGk~ 197 (207)
.|..|-.++.....+......+++...+. .--....++..+..+++++.+++|-+
T Consensus 4 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~~~~~~e~~~kaeeaqK~Gi~ 58 (306)
T PF04888_consen 4 LLAELISKSSEESLKSKKEQIERASEAQE-------KKAEEKAEEIEEAQEKAEEAQKAGIF 58 (306)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 34444444444444444444444444433 22222334556666777777776543
No 39
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=21.11 E-value=4.7e+02 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 139 KIEEQLEKKKAEYVEKMKNKMALIHKEAEEK 169 (207)
Q Consensus 139 KiE~KLEkkRA~a~EKm~NKiA~a~kkAEek 169 (207)
++|.-||+-+-=...|++|+|...+-+---+
T Consensus 147 ~lEq~leqeqef~vnKlm~ki~Klen~t~~k 177 (552)
T KOG2129|consen 147 PLEQLLEQEQEFFVNKLMNKIRKLENKTLLK 177 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 4566677777777778888877665544333
Done!