Query 028549
Match_columns 207
No_of_seqs 135 out of 216
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 22:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 77.0 32 0.0011 28.8 12.9 7 200-206 200-206 (256)
2 3mq7_A Bone marrow stromal ant 32.1 1.8E+02 0.0063 22.8 10.4 58 123-180 36-101 (121)
3 3ljm_A Coil Ser L9C; de novo d 29.1 70 0.0024 19.3 3.5 22 124-145 2-25 (31)
4 3oja_B Anopheles plasmodium-re 25.1 3.8E+02 0.013 24.1 12.2 48 152-199 539-586 (597)
5 3sjd_D Golgi to ER traffic pro 23.9 80 0.0027 21.0 3.3 24 78-101 10-33 (46)
6 3mq9_A Bone marrow stromal ant 22.0 4E+02 0.014 23.3 14.9 39 139-177 429-470 (471)
7 3pzp_A DNA polymerase kappa; D 20.5 2E+02 0.0068 26.7 6.6 16 76-91 15-30 (517)
8 3viq_A SWI5-dependent recombin 19.5 3.1E+02 0.011 21.0 7.9 61 128-188 7-67 (122)
9 3lvh_D LCB, clathrin light cha 16.6 3.6E+02 0.012 22.8 6.7 46 99-145 102-147 (205)
10 2r32_A GCN4-PII/tumor necrosis 14.5 1.7E+02 0.0059 24.0 4.0 35 136-171 8-42 (166)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.97 E-value=32 Score=28.84 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=5.4
Q ss_pred CCcCccC
Q 028549 200 KLLSCFG 206 (207)
Q Consensus 200 ~~~gCF~ 206 (207)
.|.|||-
T Consensus 200 ~C~GC~~ 206 (256)
T 3na7_A 200 ACGGCFI 206 (256)
T ss_dssp BCTTTCC
T ss_pred ccCCCCe
Confidence 4889983
No 2
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.12 E-value=1.8e+02 Score=22.76 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=40.0
Q ss_pred HhHHhhHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028549 123 VSWENSRKAAVEAE-----LKKIEEQLEKKKAE---YVEKMKNKMALIHKEAEEKRAMIEAKRGED 180 (207)
Q Consensus 123 ~aWEn~qKAKAEA~-----mrKiE~KLEkkRA~---a~EKm~NKiA~a~kkAEekRA~aEakr~ee 180 (207)
++|+.+..+.+.+. +..+-.-|+++++. -+++++++|.....+-++.-+.++..|.+-
T Consensus 36 qAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 36 EAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56777777766654 34455556666655 477788899999888888887777765543
No 3
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=29.06 E-value=70 Score=19.32 Aligned_cols=22 Identities=45% Similarity=0.810 Sum_probs=13.4
Q ss_pred hHHhhHH--HHHHHHHHHHHHHHH
Q 028549 124 SWENSRK--AAVEAELKKIEEQLE 145 (207)
Q Consensus 124 aWEn~qK--AKAEA~mrKiE~KLE 145 (207)
.||.+.| +..+.+|+-+|.+||
T Consensus 2 ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4766554 455666666666665
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.06 E-value=3.8e+02 Score=24.06 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCCCC
Q 028549 152 VEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPK 199 (207)
Q Consensus 152 ~EKm~NKiA~a~kkAEekRA~aEakr~ee~~Ka~EkA~k~R~TGk~P~ 199 (207)
.+.+++++..+.+.-++++.....-+.+-.....+.-..+..+..-|.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 345557777777777777777666655544444555555666665553
No 5
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=23.94 E-value=80 Score=20.97 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=14.7
Q ss_pred CCCchhHHHHHHHHHHHHHHhHHH
Q 028549 78 EGSVNRDAVLARVETEKRISLIRA 101 (207)
Q Consensus 78 ~gs~~rd~~l~~v~~Ekr~s~a~A 101 (207)
-||.-++..-+|+-.|.|.+++.+
T Consensus 10 ~~~~lsa~EkaRLrRERR~aKi~~ 33 (46)
T 3sjd_D 10 MGSELTEAEKRRLLRERRQKKFSN 33 (46)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHc
Confidence 466667778888888888876643
No 6
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.04 E-value=4e+02 Score=23.32 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028549 139 KIEEQLEKKKAEYV---EKMKNKMALIHKEAEEKRAMIEAKR 177 (207)
Q Consensus 139 KiE~KLEkkRA~a~---EKm~NKiA~a~kkAEekRA~aEakr 177 (207)
-+..-||++.+... +.+-+.|...+++-++.||.++.+|
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466777776654 3345677777777888888777665
No 7
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=20.55 E-value=2e+02 Score=26.68 Aligned_cols=16 Identities=0% Similarity=0.106 Sum_probs=9.7
Q ss_pred CCCCCchhHHHHHHHH
Q 028549 76 STEGSVNRDAVLARVE 91 (207)
Q Consensus 76 ~~~gs~~rd~~l~~v~ 91 (207)
.|-.++|++.+-.-|.
T Consensus 15 ag~~~~d~~~i~~ii~ 30 (517)
T 3pzp_A 15 AGMEGLDKEKINKIIM 30 (517)
T ss_dssp CSCCSCCHHHHHHHHH
T ss_pred ccccccCHHHHHHHHH
Confidence 4556677776655553
No 8
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=19.52 E-value=3.1e+02 Score=21.03 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 028549 128 SRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELA 188 (207)
Q Consensus 128 ~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aEakr~ee~~Ka~EkA 188 (207)
.++.....+|+.++.+|+..+....=.-.|+...+...-..+|.....--.+=...+.++.
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv 67 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERI 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999888877777888888888888888776554444444444443
No 9
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=16.60 E-value=3.6e+02 Score=22.81 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhhHHHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHH
Q 028549 99 IRAWEESEKSQAENNRAHKKLSSIVSWENSRKAAVEAELKKIEEQLE 145 (207)
Q Consensus 99 a~AWEeaEkaK~~n~R~qreeakI~aWEn~qKAKAEA~mrKiE~KLE 145 (207)
|..|-+..+..+.. |-...+.+-..|...-+.-.+-+.+....+|+
T Consensus 102 IRkWREEq~kRLee-kDa~sekkk~E~rekAkKeLddwY~~yneqlE 147 (205)
T 3lvh_D 102 IRKWREEQRKRLQE-LDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 147 (205)
T ss_dssp HHHHHHHHTTTSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444444444 44444444444444333333333333333333
No 10
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=14.48 E-value=1.7e+02 Score=23.97 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 136 ELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRA 171 (207)
Q Consensus 136 ~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA 171 (207)
.|+++|.++|..-++. =++-|+|++|.+.-.+...
T Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t 42 (166)
T 2r32_A 8 RMKQIEDKIEEILSKI-YHIENEIARIKKLIGERET 42 (166)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccc
Confidence 5889999999887764 4688999999887665543
Done!