Query 028549
Match_columns 207
No_of_seqs 135 out of 216
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 22:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028549.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028549hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oaoc_ e.26.1.3 (C:) Bifuncti 9.9 36 0.0026 31.4 0.7 10 198-207 591-600 (729)
2 d2d4ca1 a.238.1.1 (A:11-247) E 9.0 3.1E+02 0.022 19.2 8.3 46 114-159 154-199 (237)
3 d1dfup_ b.53.1.1 (P:) Ribosoma 6.5 38 0.0028 22.8 -0.7 17 187-203 16-32 (94)
4 d1t92a_ d.24.1.3 (A:) Pullulan 4.3 5E+02 0.036 17.2 4.4 23 128-150 6-28 (108)
5 d256ba_ a.24.3.1 (A:) Cytochro 4.0 5.4E+02 0.039 16.9 4.3 39 114-156 67-106 (106)
6 d2clyb1 f.53.1.1 (B:4-123) ATP 3.9 4E+02 0.029 18.3 3.6 14 135-148 106-119 (120)
7 d1zl8a1 a.194.1.1 (A:4-53) Lin 3.7 4E+02 0.029 16.2 2.9 21 179-199 4-24 (50)
8 d2c0sa1 a.30.7.1 (A:1-57) Hypo 3.6 3.9E+02 0.028 16.7 2.9 16 136-151 2-17 (57)
9 d1gph11 c.61.1.1 (1:235-465) G 3.4 73 0.0053 25.1 -1.2 7 201-207 203-209 (231)
10 d1ecfa1 c.61.1.1 (A:250-492) G 3.3 84 0.0061 24.8 -0.9 10 56-65 110-119 (243)
No 1
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]}
Probab=9.89 E-value=36 Score=31.43 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=5.4
Q ss_pred CCCCcCccCC
Q 028549 198 PKKLLSCFGS 207 (207)
Q Consensus 198 P~~~~gCF~~ 207 (207)
|-++||||-|
T Consensus 591 PmTSCGCFE~ 600 (729)
T d1oaoc_ 591 PMTSCGCFEA 600 (729)
T ss_dssp CCCCCSCCSE
T ss_pred CCcCchhhhh
Confidence 4445666643
No 2
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.97 E-value=3.1e+02 Score=19.19 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=32.9
Q ss_pred HHHHhhhhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 114 RAHKKLSSIVSWENSRKAAVEAELKKIEEQLEKKKAEYVEKMKNKM 159 (207)
Q Consensus 114 R~qreeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKi 159 (207)
.|........++.+.....++.+|+..+.+++..+..+...|.+=+
T Consensus 154 ~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l~ 199 (237)
T d2d4ca1 154 KLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLL 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666656566678888888999998888888887643
No 3
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=6.49 E-value=38 Score=22.83 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=13.4
Q ss_pred HHHHHhhcCCCCCCCcC
Q 028549 187 LAAKYRATGSAPKKLLS 203 (207)
Q Consensus 187 kA~k~R~TGk~P~~~~g 203 (207)
.+.++|+.|.+|.-.+|
T Consensus 16 ~~r~lRr~G~vPaViYG 32 (94)
T d1dfup_ 16 ASRRLRAANKFPAIIYG 32 (94)
T ss_dssp HHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHcCCccEEEEC
Confidence 47789999999976544
No 4
>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG {Klebsiella pneumoniae [TaxId: 573]}
Probab=4.29 E-value=5e+02 Score=17.25 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028549 128 SRKAAVEAELKKIEEQLEKKKAE 150 (207)
Q Consensus 128 ~qKAKAEA~mrKiE~KLEkkRA~ 150 (207)
.+..++.++|+.|+.-|+.-|..
T Consensus 6 Ak~~~a~~di~~i~~aL~~Y~~d 28 (108)
T d1t92a_ 6 ADRQKVVSDLVALEGALDMYKLD 28 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567778888888777765543
No 5
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=4.02 E-value=5.4e+02 Score=16.93 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHhhhhHHhHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028549 114 RAHKKLSSIVSWENS-RKAAVEAELKKIEEQLEKKKAEYVEKMK 156 (207)
Q Consensus 114 R~qreeakI~aWEn~-qKAKAEA~mrKiE~KLEkkRA~a~EKm~ 156 (207)
..+.+...|..+-+. ....|...|. +|..+|-.|+.||+
T Consensus 67 ~L~~~ld~i~~la~~G~l~eAk~~l~----~l~~~r~~YHkk~k 106 (106)
T d256ba_ 67 ILVGQIDDALKLANEGKVKEAQAAAE----QLKTTRNAYHQKYR 106 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHT----HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHHhhhcC
Confidence 344445555554333 3334444443 45677777877763
No 6
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.89 E-value=4e+02 Score=18.35 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 028549 135 AELKKIEEQLEKKK 148 (207)
Q Consensus 135 A~mrKiE~KLEkkR 148 (207)
+.|..+|..|++++
T Consensus 106 ~rI~~lekeLe~ik 119 (120)
T d2clyb1 106 TRIQEYEKELEKMR 119 (120)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 33444555555443
No 7
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=3.69 E-value=4e+02 Score=16.23 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHhhcCCCCC
Q 028549 179 EDLLKAEELAAKYRATGSAPK 199 (207)
Q Consensus 179 ee~~Ka~EkA~k~R~TGk~P~ 199 (207)
.++.++-|.-.++.++|.+|.
T Consensus 4 rDv~RaieLle~Lq~sgevp~ 24 (50)
T d1zl8a1 4 RDVQRILELMEHVQKTGEVNN 24 (50)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred hHHHHHHHHHHHHHHcCCCCh
Confidence 456777888899999999995
No 8
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=3.61 E-value=3.9e+02 Score=16.66 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028549 136 ELKKIEEQLEKKKAEY 151 (207)
Q Consensus 136 ~mrKiE~KLEkkRA~a 151 (207)
.|++++..+|.+|-+.
T Consensus 2 e~~~L~~~IE~KK~eL 17 (57)
T d2c0sa1 2 NVTKLNDRIEAKKKEL 17 (57)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3677888888777544
No 9
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=3.39 E-value=73 Score=25.10 Aligned_cols=7 Identities=43% Similarity=1.018 Sum_probs=4.6
Q ss_pred CcCccCC
Q 028549 201 LLSCFGS 207 (207)
Q Consensus 201 ~~gCF~~ 207 (207)
|++||++
T Consensus 203 C~aCFtG 209 (231)
T d1gph11 203 CLACFTG 209 (231)
T ss_dssp ECHHHHS
T ss_pred CCeeeCC
Confidence 6677764
No 10
>d1ecfa1 c.61.1.1 (A:250-492) Glutamine PRPP amidotransferase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.31 E-value=84 Score=24.80 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=6.3
Q ss_pred ccceeeecCC
Q 028549 56 SKALAVVDKA 65 (207)
Q Consensus 56 sk~l~~v~~~ 65 (207)
.|-+++|+|.
T Consensus 110 gk~vvlVDDS 119 (243)
T d1ecfa1 110 DKNVLLVDDS 119 (243)
T ss_dssp TCCEEEEESC
T ss_pred cceEEEEhhH
Confidence 4557777664
Done!