BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028552
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5EAR6|CC115_DANRE Coiled-coil domain-containing protein 115 OS=Danio rerio GN=ccdc115
PE=2 SV=1
Length = 206
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 23 DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRING----------ALLD 72
DE LL F++ L+ L+S + +GW +A AR++MG +++ A ++
Sbjct: 10 DEQLLLFMEQLEALEEKRQRLNSLIEEGWFSIAKARYSMGNKQVSALQYASEMQPLAHVE 69
Query: 73 LKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLS 132
+ T+ E+ + E Q T+ D G + +G + + + + +
Sbjct: 70 TSLLEGGTAEFKCERSENKAEEQKTKTI-----EDIGAKETGLRRRVHTKQKEVKEGEQD 124
Query: 133 EEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTML 192
++V T+T +P + + L FG+LV L+ AQ +F+ + VEIA+L +T+L
Sbjct: 125 TDEVKTKTDSPT-----PEHRNPLKWFGILVPQNLKQAQSAFKEVITLSVEIASLQSTIL 179
Query: 193 S 193
+
Sbjct: 180 A 180
>sp|Q8VE99|CC115_MOUSE Coiled-coil domain-containing protein 115 OS=Mus musculus
GN=Ccdc115 PE=2 SV=1
Length = 180
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 21/169 (12%)
Query: 23 DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
D LQ L L+ +L++ + +GWL LA AR+AMGA + G L +A+
Sbjct: 11 DSKCLQLLSDLEELEAKRAALNARVEEGWLSLAKARYAMGAKSV-GPL----QYASRMEP 65
Query: 83 KVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGT 142
+V + ++ + F + K A + E E S LR R ++E G+
Sbjct: 66 QVCVRASEAQDGPQTFRVIK-ADAQTPEEVGPSEAS----LRRRKGPTKTKE-----LGS 115
Query: 143 PLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 191
++ D L+ FG+LV LR AQ SF L+ +IA+L T +
Sbjct: 116 AVVPQD------PLNWFGILVPHSLRQAQASFRDGLQLAADIASLQTRI 158
>sp|Q96NT0|CC115_HUMAN Coiled-coil domain-containing protein 115 OS=Homo sapiens
GN=CCDC115 PE=1 SV=1
Length = 180
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 30/169 (17%)
Query: 26 LLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVS 85
LL L+ L+G T+L++ + +GWL LA AR+AMGA + G L +A+ +V
Sbjct: 17 LLGDLEELEGKRTVLNA---RVEEGWLSLAKARYAMGAKSV-GPL----QYASHMEPQVC 68
Query: 86 EQDVDSMESQPCFTLCK---WASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGT 142
++ E F + + A + G R +G LR R + E S+
Sbjct: 69 LHASEAQEGLQKFKVVRAGVHAPEEVGPREAG--------LRRRKGPTKTPEPESS---- 116
Query: 143 PLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 191
+ Q L+ FG+LV LR AQ SF L+ +IA+L +
Sbjct: 117 -------EAPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIASLQNRI 158
>sp|Q3SZB5|CC115_BOVIN Coiled-coil domain-containing protein 115 OS=Bos taurus GN=CCDC115
PE=2 SV=1
Length = 180
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 21/169 (12%)
Query: 23 DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
D LLQ L L+ +L++ + +GWL L+ AR+AMGA + G L +A+
Sbjct: 11 DFVLLQLLGDLEQLEAKRQALNARVEEGWLSLSKARYAMGAKSV-GPL----QYASHMEP 65
Query: 83 KVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGT 142
+V V + ESQ L K+ G ++ E S LR R + E S+
Sbjct: 66 QVR---VGTSESQDG--LQKFWMVRAGTQTPEEVGSREAALRRRKGLPRTPEPDSSPAP- 119
Query: 143 PLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 191
Q L FG+LV LR AQ SF L+ ++A+L + +
Sbjct: 120 ----------QNPLKWFGILVPHSLRQAQASFREGLQLAADMASLQSRI 158
>sp|Q6LYE5|VATD_METMP V-type ATP synthase subunit D OS=Methanococcus maripaludis (strain
S2 / LL) GN=atpD PE=3 SV=1
Length = 214
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 74/187 (39%), Gaps = 61/187 (32%)
Query: 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGAL 70
AE G KQ +D +++F + LD + D ++ LSQ + +L A+ MG
Sbjct: 21 AEKGHKLLKQKRDALMMEFFEILDQASGIRDKVNDALSQAYKDLIMAQAVMGT------- 73
Query: 71 LDLKVHAAATSLKVSEQDVD-SMES-----QPCFTLCKWASSDNGERSSGEEKSLSPQLR 124
L V A+ + K ++ D+D M + P F + N +R
Sbjct: 74 --LSVKEASFAAKNNDIDLDVDMRNIMGIDVPVFEIS------NVKRD------------ 113
Query: 125 HRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEI 184
+STR +P +G VS KL A +FE ALE + E+
Sbjct: 114 -----------ISTRGYSP---------------YG--VSSKLDEAAKNFEEALELITEL 145
Query: 185 ANLHTTM 191
A + T++
Sbjct: 146 AEIETSI 152
>sp|Q4P782|BST1_USTMA GPI inositol-deacylase OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=BST1 PE=3 SV=1
Length = 1520
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 10 NAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRIN 67
+A+ +G K DE + +LD LD Y ++ S+ S G+L+L A+ +GASR++
Sbjct: 1224 SAQTNLGGDKL--DELIADYLDVLDRYQRARNATSALFSSGYLKLTRAKIELGASRLS 1279
>sp|Q6FU96|RIB7_CANGA 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RIB7 PE=1
SV=1
Length = 244
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 101 CKWASSDNGERSSGEEKS-----LSPQLRHRNNSQLSEEKVSTRTG-TPLILVDQQQRQK 154
CKW +N S EEKS L P+L+ + + EE + G P+++ + + K
Sbjct: 84 CKWIGPNNDPDESMEEKSPRPIILDPKLKWKYSGSKMEELCNQGMGKPPIVITTKTPKVK 143
Query: 155 SLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTML 192
+V +++ P + ++S++ L+TL ++ + M+
Sbjct: 144 EANVEYMIMEPD-ANDRISWKSILDTLRRNYDMKSVMI 180
>sp|O14490|DLGP1_HUMAN Disks large-associated protein 1 OS=Homo sapiens GN=DLGAP1 PE=1
SV=1
Length = 977
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 155 SLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTT--MLSMFEQVHKELEN 204
SL G+L SPK RS S+ RA+ T+ +++ + S+ E V ELE+
Sbjct: 422 SLDPAGLLTSPKFRSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELES 473
>sp|P97836|DLGP1_RAT Disks large-associated protein 1 OS=Rattus norvegicus GN=Dlgap1
PE=1 SV=1
Length = 992
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 155 SLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTT--MLSMFEQVHKELEN 204
SL G+L SPK RS S+ RA+ T+ +++ + S+ E V ELE+
Sbjct: 428 SLDPAGLLTSPKFRSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELES 479
>sp|Q9D415|DLGP1_MOUSE Disks large-associated protein 1 OS=Mus musculus GN=Dlgap1 PE=1
SV=3
Length = 992
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 155 SLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTT--MLSMFEQVHKELEN 204
SL G+L SPK RS S+ RA+ T+ +++ + S+ E V ELE+
Sbjct: 428 SLDPAGLLTSPKFRSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELES 479
>sp|A4FXD2|VATD_METM5 V-type ATP synthase subunit D OS=Methanococcus maripaludis (strain
C5 / ATCC BAA-1333) GN=atpD PE=3 SV=1
Length = 211
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 61/187 (32%)
Query: 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGAL 70
AE G KQ +D +++F + LD + D ++ LSQ + +L A+ MG
Sbjct: 21 AEKGHKLLKQKRDALMMEFFEILDQASGIRDKVNDALSQAYKDLIMAQAVMGT------- 73
Query: 71 LDLKVHAAATSLKVSEQDVD-SMES-----QPCFTLCKWASSDNGERSSGEEKSLSPQLR 124
L V A+ + K + D+D M + P F + N +R
Sbjct: 74 --LSVKEASFAAKNNNIDLDVDMRNIMGIDVPVFEIS------NVKRD------------ 113
Query: 125 HRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEI 184
+S R +P +G VS KL A +FE ALE + E+
Sbjct: 114 -----------ISNRGYSP---------------YG--VSSKLDEAAKNFEEALELIAEL 145
Query: 185 ANLHTTM 191
A + T++
Sbjct: 146 AEIETSI 152
>sp|A6VFZ4|VATD_METM7 V-type ATP synthase subunit D OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=atpD PE=3 SV=1
Length = 214
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMG 62
AE G KQ +D +++F + LD + D ++ LSQ + +L A+ MG
Sbjct: 21 AEKGHKLLKQKRDALMMEFFEILDQASGIRDKVNDALSQAYKDLIMAQAVMG 72
>sp|Q58032|VATD_METJA V-type ATP synthase subunit D OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=atpD PE=3 SV=1
Length = 216
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 63/195 (32%)
Query: 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGAL 70
AE G KQ +D +++F ++ L D + + L++ + +L A+ MG
Sbjct: 21 AEKGHKLLKQKRDALIMEFFQIIEQASDLRDKVEAKLAEAYKDLIMAQTVMGT------- 73
Query: 71 LDLKVHAAATSLKVSEQDVDSMESQ-------PCFTLCKWASSDNGERSSGEEKSLSPQL 123
L V AA + K + +VD M+++ P F + N R GE + SP
Sbjct: 74 --LAVKEAALAAKNDKLEVD-MDTKNIMGVTVPTFEIY------NVRRKVGE-RGYSP-- 121
Query: 124 RHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVE 183
+GV S KL A FE ALE + E
Sbjct: 122 -----------------------------------YGV--SSKLDEAAKKFEEALELITE 144
Query: 184 IANLHTTMLSMFEQV 198
+A + T++ + E++
Sbjct: 145 LAEIETSIKLLAEEI 159
>sp|A9AAQ2|VATD_METM6 V-type ATP synthase subunit D OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=atpD PE=3 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMG 62
AE G KQ +D +++F + LD + D ++ +SQ + +L A+ MG
Sbjct: 21 AEKGHKLLKQKRDALMMEFFEILDQASGIRDKVNDAISQAYKDLIMAQAVMG 72
>sp|Q8YQ59|SYS_NOSS1 Serine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=serS PE=3 SV=1
Length = 426
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 126 RNNSQLSEEKVSTRTGT----PLILVDQQQR---------QKSLSVFGVLVSPKLRSAQL 172
R N QL +E++++R GT P++ +D+QQR Q + G +V K++S
Sbjct: 8 RENPQLIQERLNSRNGTYDIQPILQLDKQQRELEATRSQIQARSNEIGKIVGQKIKSGIN 67
Query: 173 SFERALETLVEIANLHTTMLSMFEQVHKELE 203
+ ++ L + N LS E KEL+
Sbjct: 68 PQDPEIQALRDEGNAIKAQLSELEPREKELK 98
>sp|Q3MCE0|SYS_ANAVT Serine--tRNA ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=serS PE=3 SV=1
Length = 426
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 126 RNNSQLSEEKVSTRTGT----PLILVDQQQR---------QKSLSVFGVLVSPKLRSAQL 172
R N QL +E++++R+GT P++ +D+QQR Q + G +V K++S
Sbjct: 8 RENPQLIQERLNSRSGTYDIQPILQLDKQQRELEATRSQIQARSNEIGKIVGQKIKSGIN 67
Query: 173 SFERALETLVEIANLHTTMLSMFEQVHKELE 203
+ ++ L + N LS E KEL+
Sbjct: 68 PQDPEIQALRDEGNSIKAQLSELEPREKELK 98
>sp|Q9UHL3|F153A_HUMAN Protein FAM153A OS=Homo sapiens GN=FAM153A PE=2 SV=2
Length = 310
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 54 LASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKW--------AS 105
L + HA ++ NG L DL+ H ++ +V +ME P TL ++ S
Sbjct: 97 LLTVAHADAGTQTNGDLEDLEEHGPGQTVSEEATEVHTMEGDP-DTLAEFLIRDVLQELS 155
Query: 106 SDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRT 140
S NGE EE S + R + + EE V +T
Sbjct: 156 SYNGEEEDPEEVKTSLGVPQRGDLEDLEEHVPGQT 190
>sp|A7IAU6|VATD_METB6 V-type ATP synthase subunit D OS=Methanoregula boonei (strain 6A8)
GN=atpD PE=3 SV=1
Length = 209
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 159 FGVL-VSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG 207
+GVL SP + SFE +E ++E A + TTM + +++ K N
Sbjct: 120 YGVLGTSPVIDETASSFEDLVEAIIESAEIETTMKRLLDEIEKTKRRVNA 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.125 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,454,971
Number of Sequences: 539616
Number of extensions: 2430531
Number of successful extensions: 5427
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5398
Number of HSP's gapped (non-prelim): 51
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)