Query 028552
Match_columns 207
No_of_seqs 119 out of 173
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 13:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00373 V-type ATP synthase s 98.2 1.5E-05 3.3E-10 67.1 10.9 139 11-202 23-163 (204)
2 PF01813 ATP-synt_D: ATP synth 98.2 1.1E-05 2.4E-10 67.3 8.9 139 12-202 14-154 (196)
3 TIGR00309 V_ATPase_subD H(+)-t 97.9 0.00015 3.4E-09 61.3 11.1 142 11-202 21-163 (209)
4 COG1394 NtpD Archaeal/vacuolar 97.6 0.0018 3.9E-08 55.1 12.3 136 11-202 22-161 (211)
5 KOG1647 Vacuolar H+-ATPase V1 97.6 0.0035 7.6E-08 53.5 13.8 133 17-202 32-166 (255)
6 PRK02195 V-type ATP synthase s 97.5 0.0036 7.7E-08 52.8 13.0 131 11-202 22-153 (201)
7 PF14038 YqzE: YqzE-like prote 73.3 0.69 1.5E-05 31.1 -1.0 16 152-168 34-51 (54)
8 PF10642 Tom5: Mitochondrial i 69.5 25 0.00053 23.2 5.7 27 158-185 1-32 (49)
9 PHA01750 hypothetical protein 65.8 17 0.00037 25.5 4.6 25 171-195 29-55 (75)
10 PF08287 DASH_Spc19: Spc19; I 49.6 35 0.00076 27.5 4.7 27 156-182 40-66 (153)
11 KOG3478 Prefoldin subunit 6, K 43.9 65 0.0014 25.0 5.0 46 157-202 56-103 (120)
12 PRK12419 riboflavin synthase s 40.7 44 0.00096 27.2 4.0 35 158-192 110-155 (158)
13 PRK00061 ribH 6,7-dimethyl-8-r 38.1 37 0.0008 27.5 3.1 34 158-191 112-153 (154)
14 PF06150 ChaB: ChaB; InterPro 35.4 1.4E+02 0.003 20.0 5.3 22 163-184 1-27 (57)
15 cd00890 Prefoldin Prefoldin is 32.9 1.1E+02 0.0024 22.8 5.0 46 155-200 71-119 (129)
16 PRK11677 hypothetical protein; 32.5 85 0.0018 24.9 4.3 51 7-57 30-80 (134)
17 PF08928 DUF1910: Domain of un 31.8 47 0.001 24.9 2.7 23 42-64 43-65 (117)
18 PF00885 DMRL_synthase: 6,7-di 30.2 30 0.00065 27.6 1.4 37 154-191 100-144 (144)
19 TIGR03504 FimV_Cterm FimV C-te 26.2 42 0.00091 21.3 1.3 14 51-64 2-15 (44)
20 PF04696 Pinin_SDK_memA: pinin 26.2 1E+02 0.0023 24.0 3.8 20 157-177 11-30 (131)
21 PF05338 DUF717: Protein of un 24.9 1.1E+02 0.0023 20.7 3.1 38 162-199 2-40 (55)
22 cd00584 Prefoldin_alpha Prefol 24.5 1.8E+02 0.0039 22.0 4.9 45 156-200 72-119 (129)
23 COG0054 RibH Riboflavin syntha 23.9 74 0.0016 25.8 2.6 35 154-189 109-151 (152)
24 cd02682 MIT_AAA_Arch MIT: doma 21.9 2.9E+02 0.0064 19.6 5.1 20 168-187 23-42 (75)
25 PRK03947 prefoldin subunit alp 21.8 2.2E+02 0.0047 22.0 4.9 46 154-199 77-125 (140)
No 1
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=98.22 E-value=1.5e-05 Score=67.07 Aligned_cols=139 Identities=23% Similarity=0.383 Sum_probs=94.7
Q ss_pred cccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhh-hhhhceeeeecccc
Q 028552 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKV-HAAATSLKVSEQDV 89 (207)
Q Consensus 11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~-~~~~~~v~v~~~~~ 89 (207)
+.++..-++..-|.++.+++.+++++..++..+...+.+.|++|+.|++.+|...+.. ... ......|.+...-+
T Consensus 23 a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~----~~~~~~~~~~v~~~~~ni 98 (204)
T PRK00373 23 AERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEE----AAASPKESLEVDVSSKNI 98 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH----HHhCCCCCceEEEEeEEE
Confidence 3445555667779999999999999999999999999999999999999999754431 000 01112232222100
Q ss_pred ccCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHH
Q 028552 90 DSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLR 168 (207)
Q Consensus 90 ~~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR 168 (207)
-+ -..|.|... . ......+| ||.+ +|+.+.
T Consensus 99 ~G-V~vP~~~~~------~---------------------------------------~~~~~~~~---y~~~~t~~~~d 129 (204)
T PRK00373 99 MG-VVVPVIELS------V---------------------------------------KRTLPERG---YGFLGTSAELD 129 (204)
T ss_pred EE-EEeceEEee------c---------------------------------------ccCCccCC---cCcccCCHHHH
Confidence 00 011111110 0 00000122 5665 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552 169 SAQLSFERALETLVEIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 169 ~AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~ 202 (207)
.|-..|..+++.++++|+++..+..+..+|+++.
T Consensus 130 ~a~~~~~~~l~~li~lA~~e~~~~~L~~ei~kT~ 163 (204)
T PRK00373 130 EAAEKFEELLEKILELAEVEKTIQLLADEIEKTK 163 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 2
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=98.16 E-value=1.1e-05 Score=67.33 Aligned_cols=139 Identities=24% Similarity=0.377 Sum_probs=88.2
Q ss_pred ccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhh-hhceeeeeccccc
Q 028552 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHA-AATSLKVSEQDVD 90 (207)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~-~~~~v~v~~~~~~ 90 (207)
+++..-++...|.++.+++.++++|..++..+...+.+.|+.|+.|++.+|...+.. ..... ....|.+...-+-
T Consensus 14 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~ni~ 89 (196)
T PF01813_consen 14 KRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSS----VAESVPESVEVEVKERNIM 89 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHH----HHTS-S---EEEEEEEEET
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH----HHhcCCCCcEEEEEEEEEE
Confidence 444555667779999999999999999999999999999999999999988654432 11000 0112222221000
Q ss_pred cCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHH
Q 028552 91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRS 169 (207)
Q Consensus 91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~ 169 (207)
+ -..|.|.... .....|..-+|.+ .|+.+-.
T Consensus 90 G-V~vP~~~~~~-----------------------------------------------~~~~~~~~~y~~~~~~~~~d~ 121 (196)
T PF01813_consen 90 G-VRVPVLEVKE-----------------------------------------------VRRPFPSPPYGLLGTPPWLDE 121 (196)
T ss_dssp T-EEEEEEEEE-------------------------------------------------GGTTS------TT--HHHHH
T ss_pred E-EEeceEEeee-----------------------------------------------cccccccccCCcccCCHHHHH
Confidence 0 0011111100 0011222334443 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552 170 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 170 AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~ 202 (207)
|...|..+++.++++|+++..+..+..+|+++.
T Consensus 122 a~~~~~~~l~~~i~lA~~e~~~~~L~~ei~kT~ 154 (196)
T PF01813_consen 122 AREKFEELLELLIELAELETALRRLAEEIRKTQ 154 (196)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988753
No 3
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=97.91 E-value=0.00015 Score=61.25 Aligned_cols=142 Identities=22% Similarity=0.306 Sum_probs=92.9
Q ss_pred cccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhhceeeeeccccc
Q 028552 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVD 90 (207)
Q Consensus 11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~~~v~v~~~~~~ 90 (207)
+.++..-++..-|.++.+++.+++++..++..+...+.+.|++|+.|++..|...+..-. .........|.+...-+-
T Consensus 21 a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~v~~~~~~v~~~~~ni~ 98 (209)
T TIGR00309 21 AKRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAA--LSVVTARFEVDMKSKNIM 98 (209)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH--hcCCcccceEEEEEEEEe
Confidence 344555566777999999999999999999999999999999999999998864321100 000000011212110000
Q ss_pred cCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHH
Q 028552 91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRS 169 (207)
Q Consensus 91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~ 169 (207)
+ -..|.|+.+. . . .. ..+|. +|.+ +|+.+-.
T Consensus 99 G-V~vP~~~~~~-----~-------------------------------~--------~~-~~~~~--y~l~~t~~~~d~ 130 (209)
T TIGR00309 99 G-VVVPVFDSYE-----I-------------------------------R--------RK-VHERG--YGLLFTSYKVDE 130 (209)
T ss_pred e-EEcceeEeec-----c-------------------------------c--------cC-ccccC--cCcccCCHHHHH
Confidence 0 0111121110 0 0 00 00122 5654 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552 170 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 170 AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~ 202 (207)
|=..|..+++.+|++|+++..+..+..+|+++.
T Consensus 131 a~~~~~~~l~~li~lA~~e~~~~~L~~eI~~T~ 163 (209)
T TIGR00309 131 AAEIYEEAVELIVELAEIETTIRLLAEEIEITK 163 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 4
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=97.56 E-value=0.0018 Score=55.09 Aligned_cols=136 Identities=25% Similarity=0.314 Sum_probs=96.0
Q ss_pred cccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhhc-eeeeeccc-
Q 028552 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAAT-SLKVSEQD- 88 (207)
Q Consensus 11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~~-~v~v~~~~- 88 (207)
++.+..-++..=|.++.+|..++++|..++..+.+.+.+.|.+++-|-+.+|...+-. +..... .+.|+...
T Consensus 22 a~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve~------~~~~~~~~~~v~~~~~ 95 (211)
T COG1394 22 ARRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVEE------IALVQKEKLEVDVDVE 95 (211)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH------HHhCCCCCceeeecee
Confidence 3444555666779999999999999999999999999999999999999999765421 111111 11111100
Q ss_pred -cccCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCcccccc-CCCChh
Q 028552 89 -VDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFG-VLVSPK 166 (207)
Q Consensus 89 -~~~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG-~LvP~s 166 (207)
+-+ -..|.|... ....|..-|| +-+|+.
T Consensus 96 nI~G-V~vP~~~~~-------------------------------------------------~~~~~~~~~~~~~t~~~ 125 (211)
T COG1394 96 NIMG-VVVPTFELV-------------------------------------------------ELTPPPYDLGILSTSAW 125 (211)
T ss_pred eeee-eeeeeeeee-------------------------------------------------ccCCCcccccccCCcHH
Confidence 000 001111110 0124556677 339999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552 167 LRSAQLSFERALETLVEIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 167 LR~AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~ 202 (207)
|=.|=..|..+|+.+|++|.++..+.-+.++|+++-
T Consensus 126 ld~a~~~~~elle~li~lae~e~~~~~L~~Ei~~T~ 161 (211)
T COG1394 126 LDEAIEKFEELLEKLIELAELETTLRLLLEEIRKTK 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 5
>KOG1647 consensus Vacuolar H+-ATPase V1 sector, subunit D [Energy production and conversion]
Probab=97.55 E-value=0.0035 Score=53.49 Aligned_cols=133 Identities=18% Similarity=0.226 Sum_probs=86.4
Q ss_pred hhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhh--ceeeeeccccccCCC
Q 028552 17 RQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAA--TSLKVSEQDVDSMES 94 (207)
Q Consensus 17 ~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~--~~v~v~~~~~~~~~~ 94 (207)
-++-..|.+.++|=+++..|..-...+...++..+|+||.|+|.+|+- + .+..... .+|.|-... ++
T Consensus 32 LLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~gn~--~-----~~v~q~v~~a~v~vRsk~----en 100 (255)
T KOG1647|consen 32 LLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGGNF--K-----HQVQQNVKQATVKVRSKK----EN 100 (255)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--c-----HHHHhhhhhheeeeeeec----cc
Confidence 344566999999999999999999999999999999999999998852 2 2222111 123332211 22
Q ss_pred CCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCCCChhHHHHHHHH
Q 028552 95 QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSF 174 (207)
Q Consensus 95 ~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~LvP~sLR~AQ~~F 174 (207)
...+.+....+..+ ....-||.-.|- --+++..|...|
T Consensus 101 v~GV~Lp~fe~~~d-----------------------------------------g~~~~~LtgL~r-gGqqv~~~r~~Y 138 (255)
T KOG1647|consen 101 VSGVKLPTFELYQD-----------------------------------------GIDAFPLTGLGR-GGQQVARLRENY 138 (255)
T ss_pred cceeeechhhhhcc-----------------------------------------cCcccccccccc-chHHHHHHHHHH
Confidence 22222221111000 001134433211 348899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552 175 ERALETLVEIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 175 ~~ale~~velanlq~~i~~~~~~l~~~~ 202 (207)
.+||+.+|++|++|.....+-.-|+.++
T Consensus 139 ~kAve~LVelasLqtsf~~Lde~ik~TN 166 (255)
T KOG1647|consen 139 TKAVELLVELASLQTSFRTLDEAIKVTN 166 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999877766665443
No 6
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=97.48 E-value=0.0036 Score=52.82 Aligned_cols=131 Identities=8% Similarity=0.000 Sum_probs=91.7
Q ss_pred cccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhhceeeeeccccc
Q 028552 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVD 90 (207)
Q Consensus 11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~~~v~v~~~~~~ 90 (207)
++++..-++..-|.++..++++++++..++..+...+...|..|+-|+-.+|..... .. ...|.+...-+=
T Consensus 22 a~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~~~~--------~~-~~~v~~~~~nim 92 (201)
T PRK02195 22 LERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFDEDL--------IK-VKKVEKDYENIA 92 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhc--------CC-cceEEEeeeeEe
Confidence 344455566677899999999999999999999999999999999999888764100 00 012222110000
Q ss_pred cCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHH
Q 028552 91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRS 169 (207)
Q Consensus 91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~ 169 (207)
+ -..|.|... ..+...||.+ +|+.+=.
T Consensus 93 G-V~vP~~~~~---------------------------------------------------~~~~~~Y~~~~t~~~lD~ 120 (201)
T PRK02195 93 G-VEVPILDSI---------------------------------------------------EFEIIEYSLLNTPIWVDT 120 (201)
T ss_pred e-eeeceeeee---------------------------------------------------ecCCCCcCCccCCHHHHH
Confidence 0 001111110 0122337777 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552 170 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 170 AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~ 202 (207)
|=..|..+++.++++|+++..+..+..+|+++-
T Consensus 121 a~~~~~~ll~~~i~lAe~E~~l~~L~~ei~kT~ 153 (201)
T PRK02195 121 GIELLKELVQLKIEAEVLQERLLLLEEELRKTT 153 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 7
>PF14038 YqzE: YqzE-like protein
Probab=73.34 E-value=0.69 Score=31.15 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=11.7
Q ss_pred ccCcc--ccccCCCChhHH
Q 028552 152 RQKSL--SVFGVLVSPKLR 168 (207)
Q Consensus 152 ~~DPL--~wFG~LvP~sLR 168 (207)
.+.|. +|||+ +|.+++
T Consensus 34 ~k~p~~~rWFG~-iP~~~~ 51 (54)
T PF14038_consen 34 EKEPFSYRWFGM-IPYSLS 51 (54)
T ss_pred cCCcHHHHHHhH-HHHHHH
Confidence 34677 99998 676665
No 8
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=69.54 E-value=25 Score=23.20 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=19.7
Q ss_pred cccCCCChh-----HHHHHHHHHHHHHHHHHHH
Q 028552 158 VFGVLVSPK-----LRSAQLSFERALETLVEIA 185 (207)
Q Consensus 158 wFG~LvP~s-----LR~AQ~~F~~ale~~vela 185 (207)
|||+ .|+. +|.+|..-...|..++-.|
T Consensus 1 MFgg-~~~qpS~eE~k~~e~~A~~Tvk~a~~~a 32 (49)
T PF10642_consen 1 MFGG-PPPQPSEEEIKAAEAQANFTVKNAAAAA 32 (49)
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999 4443 8888888888877776443
No 9
>PHA01750 hypothetical protein
Probab=65.83 E-value=17 Score=25.55 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHH
Q 028552 171 QLSFERALETLV--EIANLHTTMLSMF 195 (207)
Q Consensus 171 Q~~F~~ale~~v--elanlq~~i~~~~ 195 (207)
...|+.|++.+| |+-|++.+|..+-
T Consensus 29 Kq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 29 KQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999 9999999987654
No 10
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=49.63 E-value=35 Score=27.53 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.1
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHHH
Q 028552 156 LSVFGVLVSPKLRSAQLSFERALETLV 182 (207)
Q Consensus 156 L~wFG~LvP~sLR~AQ~~F~~ale~~v 182 (207)
=+.|+.++=+.|+.||.+|..=|+-.|
T Consensus 40 ~R~FeLvpe~dl~~Aq~~l~~EI~P~I 66 (153)
T PF08287_consen 40 TRHFELVPEPDLQAAQQSLRDEIEPQI 66 (153)
T ss_pred cCcccccCHHHHHHHHHHHHHhccHHH
Confidence 378999999999999999998776655
No 11
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=43.90 E-value=65 Score=24.96 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=38.2
Q ss_pred cccc-CCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 028552 157 SVFG-VLVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 157 ~wFG-~LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~l~~~~ 202 (207)
+.|| +||++.|-.|.++-..-|+.|- |+..+.+.|.....+..+.-
T Consensus 56 KliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R 103 (120)
T KOG3478|consen 56 KLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQR 103 (120)
T ss_pred HHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 4899999999999999999998 99999888877776665543
No 12
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=40.66 E-value=44 Score=27.24 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=23.5
Q ss_pred cccCCCChhHHHHHHH--H---------HHHHHHHHHHHHHHHHHH
Q 028552 158 VFGVLVSPKLRSAQLS--F---------ERALETLVEIANLHTTML 192 (207)
Q Consensus 158 wFG~LvP~sLR~AQ~~--F---------~~ale~~velanlq~~i~ 192 (207)
-||+|+|..+-||... + ..|...+++++++..+|.
T Consensus 110 ~fGVLT~~~~eqA~~rqa~~Ra~~~nKG~eaA~aalem~~l~~~l~ 155 (158)
T PRK12419 110 FSVVLTPHHFHESEEHHDFFRAHFVVKGAEAAHACADTLLSRERLR 155 (158)
T ss_pred EEEecCCCcHHHHHHHHHHhhcCccccHHHHHHHHHHHHHHHHHhc
Confidence 5999999999976552 1 235555667776666553
No 13
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=38.09 E-value=37 Score=27.45 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=24.0
Q ss_pred cccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028552 158 VFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 191 (207)
Q Consensus 158 wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 191 (207)
-||+|+|....||..... .|...+++++++..+|
T Consensus 112 ~~GVLt~~~~eQa~~R~~~~~~nkG~eaa~aal~m~~l~~~l 153 (154)
T PRK00061 112 GFGVLTTDTIEQAIERAGTKAGNKGAEAALAALEMANLLKQL 153 (154)
T ss_pred EEEecCCCCHHHHHHHhCccccccHHHHHHHHHHHHHHHHhc
Confidence 599999999999985542 3555556666665544
No 14
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=35.41 E-value=1.4e+02 Score=20.05 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=17.2
Q ss_pred CChhHH-----HHHHHHHHHHHHHHHH
Q 028552 163 VSPKLR-----SAQLSFERALETLVEI 184 (207)
Q Consensus 163 vP~sLR-----~AQ~~F~~ale~~vel 184 (207)
.|+++| .||..|..+-..+.+.
T Consensus 1 LP~~vr~~LP~~Aq~if~~afn~a~~~ 27 (57)
T PF06150_consen 1 LPSSVREHLPEHAQRIFRKAFNSAWEE 27 (57)
T ss_dssp S-HHHHTT--SHHHHHHHHHHHHHHHH
T ss_pred CchHHHhHCCHHHHHHHHHHHHHHHHh
Confidence 377777 8999999999888843
No 15
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.93 E-value=1.1e+02 Score=22.78 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=36.0
Q ss_pred cccccc--CCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 028552 155 SLSVFG--VLVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVHK 200 (207)
Q Consensus 155 PL~wFG--~LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~l~~ 200 (207)
-+.|.| ++|..++-.|...+.+-++.+- ++..+...+..+..++.+
T Consensus 71 v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 119 (129)
T cd00890 71 VLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITE 119 (129)
T ss_pred EEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666 5799999999999999998887 777777777776666553
No 16
>PRK11677 hypothetical protein; Provisional
Probab=32.53 E-value=85 Score=24.89 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=43.4
Q ss_pred hhcccccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552 7 EKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASA 57 (207)
Q Consensus 7 ~~~~~~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArA 57 (207)
+....+++++..+..++..=-++-+-+++--.|.+.|....++-|.+||+.
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~ 80 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKS 80 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888888888888888888888888889999999999999999983
No 17
>PF08928 DUF1910: Domain of unknown function (DUF1910); InterPro: IPR015024 This domain is found in hypothetical bacterial proteins.
Probab=31.76 E-value=47 Score=24.87 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCc
Q 028552 42 SLSSTLSQGWLELASARHAMGAS 64 (207)
Q Consensus 42 ~L~~~~~~G~~~LArArys~G~~ 64 (207)
.....+....+++..|+||+|.+
T Consensus 43 ~~~~~~~~~~~~~l~~~YS~G~~ 65 (117)
T PF08928_consen 43 NYYWSIFDYYLELLIAKYSAGDS 65 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666777888999999999974
No 18
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=30.23 E-value=30 Score=27.55 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=28.8
Q ss_pred CccccccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028552 154 KSLSVFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 191 (207)
Q Consensus 154 DPL~wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 191 (207)
-|+ -||+|+|.+.-||..... .|...+++++++..+|
T Consensus 100 ~PV-~~gvlt~~~~eqa~~R~~~~~~nkG~eaA~aal~m~~l~~~l 144 (144)
T PF00885_consen 100 IPV-IFGVLTPDTEEQALERAGGKAGNKGREAAEAALEMAKLLRQL 144 (144)
T ss_dssp SEE-EEEEEEESSHHHHHHHCEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred ccE-EEEecCCCCHHHHHHHhcchhhhhHHHHHHHHHHHHHHHhcC
Confidence 444 599999999999998774 5667777888877765
No 19
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=26.20 E-value=42 Score=21.34 Aligned_cols=14 Identities=43% Similarity=0.389 Sum_probs=11.7
Q ss_pred HHHHHHhhhhcCCc
Q 028552 51 WLELASARHAMGAS 64 (207)
Q Consensus 51 ~~~LArArys~G~~ 64 (207)
-|+||||.+.||..
T Consensus 2 kLdLA~ayie~Gd~ 15 (44)
T TIGR03504 2 KLDLARAYIEMGDL 15 (44)
T ss_pred chHHHHHHHHcCCh
Confidence 37999999999963
No 20
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=26.19 E-value=1e+02 Score=24.01 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.0
Q ss_pred ccccCCCChhHHHHHHHHHHH
Q 028552 157 SVFGVLVSPKLRSAQLSFERA 177 (207)
Q Consensus 157 ~wFG~LvP~sLR~AQ~~F~~a 177 (207)
+|||+|. -.|.+++..-...
T Consensus 11 RmFG~Ll-GTL~kf~~e~~k~ 30 (131)
T PF04696_consen 11 RMFGGLL-GTLQKFKKEEEKK 30 (131)
T ss_pred hHHHHHH-HHHHHHHHhHHhc
Confidence 6999987 5898888854333
No 21
>PF05338 DUF717: Protein of unknown function (DUF717); InterPro: IPR008002 This entry is represented by the Human herpesvirus 8, Orf30 protein; it is a family of uncharacterised viral proteins.
Probab=24.91 E-value=1.1e+02 Score=20.74 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=27.7
Q ss_pred CCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028552 162 LVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVH 199 (207)
Q Consensus 162 LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~l~ 199 (207)
+.+..+-.|++.|.+-++.+| ++++-=+.+.-+....+
T Consensus 2 lse~Df~eC~~FF~rPlp~li~~~a~sl~~l~~~~s~~Q 40 (55)
T PF05338_consen 2 LSENDFEECLKFFSRPLPELIDECAKSLSDLRLVDSQTQ 40 (55)
T ss_pred CcHHHHHHHHHHHcCcHHHHHHHHHHHHhhhhhhcchHH
Confidence 456778899999999999988 77766666655444433
No 22
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.51 E-value=1.8e+02 Score=21.97 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=34.3
Q ss_pred cccc--cCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 028552 156 LSVF--GVLVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVHK 200 (207)
Q Consensus 156 L~wF--G~LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~l~~ 200 (207)
+-|. |++|-.++..|...|.+-++.+- .+.+++..+..+..++..
T Consensus 72 ~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 72 LVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred EEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 45799999999999999988887 667777777766666554
No 23
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=23.90 E-value=74 Score=25.83 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=26.8
Q ss_pred CccccccCCCChhHHHHHHHH--H------HHHHHHHHHHHHHH
Q 028552 154 KSLSVFGVLVSPKLRSAQLSF--E------RALETLVEIANLHT 189 (207)
Q Consensus 154 DPL~wFG~LvP~sLR~AQ~~F--~------~ale~~velanlq~ 189 (207)
-|+ -||+|.|...-||...- + .|...+++++|+..
T Consensus 109 ~PV-~~GVLt~~~~eqA~~rag~~~gnkG~~Aa~aAlem~~l~~ 151 (152)
T COG0054 109 VPV-TFGVLTTDNIEQAIERAGTKAGNKGAEAAEAALEMANLLK 151 (152)
T ss_pred CCe-EeeecCCCcHHHHHHHhCccccccHHHHHHHHHHHHHHhc
Confidence 454 59999999999887653 2 68888889888754
No 24
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=21.89 E-value=2.9e+02 Score=19.58 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028552 168 RSAQLSFERALETLVEIANL 187 (207)
Q Consensus 168 R~AQ~~F~~ale~~velanl 187 (207)
..|..+++.|++.++++...
T Consensus 23 ~eAi~~Y~~aIe~L~q~~~~ 42 (75)
T cd02682 23 EDAITNYKKAIEVLSQIVKN 42 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999988877
No 25
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.83 E-value=2.2e+02 Score=21.95 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=33.4
Q ss_pred Cccccc--cCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028552 154 KSLSVF--GVLVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVH 199 (207)
Q Consensus 154 DPL~wF--G~LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~l~ 199 (207)
+-+-|- |++|..++-.|-..|.+-++.+- .+..++..+..+..++.
T Consensus 77 kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~ 125 (140)
T PRK03947 77 KVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIA 125 (140)
T ss_pred eEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666 45799999999999999888777 55666666655555444
Done!