Query 028552
Match_columns 207
No_of_seqs 119 out of 173
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 22:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aon_A V-type sodium ATPase su 98.1 1.6E-05 5.5E-10 66.4 9.8 139 13-202 31-171 (217)
2 3a5c_G V-type ATP synthase sub 97.8 1.5E-05 5.2E-10 66.9 5.1 135 13-202 23-158 (223)
3 2zrr_A Mundticin KS immunity p 42.1 24 0.00081 26.4 3.5 44 153-204 21-70 (118)
4 2k19_A Putative piscicolin 126 33.3 18 0.00061 26.2 1.6 43 154-204 2-50 (98)
5 1c2y_A Protein (lumazine synth 32.8 31 0.0011 26.9 3.1 34 158-191 112-153 (156)
6 1rh4_A Right-handed coiled coi 28.7 85 0.0029 17.8 4.0 21 182-202 13-33 (35)
7 3nq4_A 6,7-dimethyl-8-ribityll 24.0 33 0.0011 26.7 1.8 34 158-191 113-154 (156)
8 2i0f_A 6,7-dimethyl-8-ribityll 21.8 54 0.0018 25.5 2.6 34 158-191 114-155 (157)
9 1hqk_A 6,7-dimethyl-8-ribityll 20.2 52 0.0018 25.5 2.2 34 158-191 112-153 (154)
10 3ghg_A Fibrinogen alpha chain; 19.0 2.2E+02 0.0074 26.5 6.3 38 163-200 111-149 (562)
No 1
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=98.10 E-value=1.6e-05 Score=66.44 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=92.1
Q ss_pred cccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhh-hhhhceeeeecccccc
Q 028552 13 NGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKV-HAAATSLKVSEQDVDS 91 (207)
Q Consensus 13 ~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~-~~~~~~v~v~~~~~~~ 91 (207)
++..=++..-|.|+.+|+++++++..++..+...+...|++|+.|++.+|...+.. ... ......|.+...-+-+
T Consensus 31 rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~nImG 106 (217)
T 3aon_A 31 RGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDE----LLALPAENVSISVVEKNIMS 106 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH----HHTSCSCCCEEEEEEEEETT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH----HHhCCCCceEEEEEEEEEEE
Confidence 34444566679999999999999999999999999999999999999998643321 000 0001123222210000
Q ss_pred CCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHHH
Q 028552 92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRSA 170 (207)
Q Consensus 92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~A 170 (207)
-..|.|.... . .......| -||.+ .|+.+-.|
T Consensus 107 -V~vP~~~~~~-----~---------------------------------------~~~~~~~~--~ygl~~t~~~ld~a 139 (217)
T 3aon_A 107 -VKVPLMNFQY-----D---------------------------------------ETLNETPL--EYGYLHSNAELDRS 139 (217)
T ss_dssp -EEEEEEEEEC-----C---------------------------------------GGGTTSCC--CCCCTTCCHHHHHH
T ss_pred -EEeceEEEEe-----c---------------------------------------ccccCCcC--CcCcccCCHHHHHH
Confidence 0111221110 0 00000011 25665 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552 171 QLSFERALETLVEIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 171 Q~~F~~ale~~velanlq~~i~~~~~~l~~~~ 202 (207)
-..|..+++.+|++|+++..+..+-.+|+++.
T Consensus 140 ~~~~~~~l~~lvelA~le~~~~~L~~eIkkT~ 171 (217)
T 3aon_A 140 IDGFTQLLPKLLKLAEVEKTCQLMAEEIEKTR 171 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
No 2
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=97.84 E-value=1.5e-05 Score=66.90 Aligned_cols=135 Identities=18% Similarity=0.239 Sum_probs=53.0
Q ss_pred cccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhhceeeeeccccccC
Q 028552 13 NGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSM 92 (207)
Q Consensus 13 ~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~~~v~v~~~~~~~~ 92 (207)
++..=++..-|.|+.+|+++++++..++..+...+...|++|+.|++.+|...+..-. .... ....|.+...
T Consensus 23 rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~~~-~~~~v~~~~~----- 94 (223)
T 3a5c_G 23 KGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAA--LGVP-PLEGVEAEVE----- 94 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH--hcCC-CCeEEEEEEE-----
Confidence 3444456667999999999999999999999999999999999999999975443200 0000 0011111110
Q ss_pred CCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHHHH
Q 028552 93 ESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRSAQ 171 (207)
Q Consensus 93 ~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ 171 (207)
+.-.+.+ |.+.. ......| ||.+ .|+.+-.|-
T Consensus 95 -nImGV~v--------------------P~~~~-----------------------~~~~~~~---ygl~~t~~~ld~a~ 127 (223)
T 3a5c_G 95 -NVWGSKV--------------------PRLKA-----------------------TFPDGAL---LSPVGTPAYTLEAS 127 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -EEEEEEe--------------------ceEEe-----------------------ccCCCCC---cCcccCCHHHHHHH
Confidence 0000000 00000 0000012 5665 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552 172 LSFERALETLVEIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 172 ~~F~~ale~~velanlq~~i~~~~~~l~~~~ 202 (207)
..|..+++.+|++|+++..+..+-.+|+++.
T Consensus 128 ~~~~~~l~~lvelA~le~~~~~L~~eIkkT~ 158 (223)
T 3a5c_G 128 RAFRRYAEALIRVANTETRLKKIGEEIKKTT 158 (223)
T ss_dssp ----CHHHHHHTHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988764
No 3
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=42.12 E-value=24 Score=26.41 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=19.6
Q ss_pred cCccccccCCCChhHHHHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHhhc
Q 028552 153 QKSLSVFGVLVSPKLRSAQLSFERALETLVEIA-NLH-----TTMLSMFEQVHKELEN 204 (207)
Q Consensus 153 ~DPL~wFG~LvP~sLR~AQ~~F~~ale~~vela-nlq-----~~i~~~~~~l~~~~~~ 204 (207)
--+|+||.+- +..-++|+.++-+|. +++ ..+..++..+++|++.
T Consensus 21 M~~LKWFsGG--------kER~~~Ai~II~~Ll~~l~~~~~~~~Lk~vL~~Y~~ELk~ 70 (118)
T 2zrr_A 21 MSNLKWFSGG--------DDRRKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLKN 70 (118)
T ss_dssp ---------C--------CCHHHHHHHHHHHHHHHHCSCSSSHHHHHHHHHHHHHHHH
T ss_pred cccceeccCC--------HHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 3589999442 334456666666543 222 3466677777777653
No 4
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=33.28 E-value=18 Score=26.24 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=23.3
Q ss_pred CccccccCCCChhHHHHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHhhc
Q 028552 154 KSLSVFGVLVSPKLRSAQLSFERALETLVEIA-NLH-----TTMLSMFEQVHKELEN 204 (207)
Q Consensus 154 DPL~wFG~LvP~sLR~AQ~~F~~ale~~vela-nlq-----~~i~~~~~~l~~~~~~ 204 (207)
-+|+||.+- +..-++|+.++-+|. +++ ..+..++..++.|++.
T Consensus 2 ~~lKWfsGG--------~ER~~~Ai~iI~~Ll~~l~~~~~~~~Lk~vL~~Y~~EL~~ 50 (98)
T 2k19_A 2 GKLKWFSGG--------KERSNQAENIITDLLDDLKTDLDNESLKKVLENYLEELKQ 50 (98)
T ss_dssp CSCCCCSCC--------SCHHHHHHHHHHHHHHHHTTCSSCSSTHHHHHHHHHHHHS
T ss_pred CCceeccCC--------HHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 378999442 334455666666443 222 1245566666666643
No 5
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=32.76 E-value=31 Score=26.85 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=25.6
Q ss_pred cccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028552 158 VFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 191 (207)
Q Consensus 158 wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 191 (207)
-||+|+|.+.-||-... ..|-..+++++++..+|
T Consensus 112 ~~GVLT~~~~eQA~~Rag~~~~nKG~eaA~aAlem~~l~~~l 153 (156)
T 1c2y_A 112 VFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHH 153 (156)
T ss_dssp EEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHH
Confidence 59999999998887654 24666677888877665
No 6
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=28.68 E-value=85 Score=17.82 Aligned_cols=21 Identities=14% Similarity=0.464 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028552 182 VEIANLHTTMLSMFEQVHKEL 202 (207)
Q Consensus 182 velanlq~~i~~~~~~l~~~~ 202 (207)
.-+|.++++|.....+|+++|
T Consensus 13 yllakikaeilaalkkikqei 33 (35)
T 1rh4_A 13 YLLAKIKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357888899999999999887
No 7
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=24.00 E-value=33 Score=26.72 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=26.4
Q ss_pred cccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028552 158 VFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 191 (207)
Q Consensus 158 wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 191 (207)
-||+|+|.+.-||-.... .|-..+++++|+..+|
T Consensus 113 ~~GVLT~~~~eQA~~Rag~~~~nKG~eaA~aalem~~l~~~l 154 (156)
T 3nq4_A 113 AFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAI 154 (156)
T ss_dssp EEEEEEESCHHHHHHHBTSTTCBHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh
Confidence 599999999999987652 4666677888887654
No 8
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=21.76 E-value=54 Score=25.49 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=26.1
Q ss_pred cccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028552 158 VFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 191 (207)
Q Consensus 158 wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 191 (207)
-||+|+|.+.-||-.... .|-..+++++++..++
T Consensus 114 ~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aAlem~~l~~~l 155 (157)
T 2i0f_A 114 GNGILTVENEEQAWVHARREDKDKGGFAARAALTMIGLRKKF 155 (157)
T ss_dssp EEEEEEESSHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCHHHHHHHhCccccccHHHHHHHHHHHHHHHHHh
Confidence 599999999999987652 3556667888877664
No 9
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=20.23 E-value=52 Score=25.49 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=25.6
Q ss_pred cccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028552 158 VFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 191 (207)
Q Consensus 158 wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 191 (207)
-||+|+|.+.-||-... ..|-..+++++++..+|
T Consensus 112 ~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aalem~~l~~~l 153 (154)
T 1hqk_A 112 TFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSL 153 (154)
T ss_dssp EEEEEEESSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhcccccchHHHHHHHHHHHHHHHHhc
Confidence 59999999999988664 23566667888877665
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=18.99 E-value=2.2e+02 Score=26.55 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=31.0
Q ss_pred CChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 028552 163 VSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVHK 200 (207)
Q Consensus 163 vP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~l~~ 200 (207)
+...||.-...-+.-|..-+ .|+.||+.|..++.+|+|
T Consensus 111 ~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 111 VSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789998888888887777 888999999888777765
Done!