Query 028552
Match_columns 207
No_of_seqs 119 out of 173
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 22:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028552.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028552hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k0ia2 d.16.1.2 (A:174-275) p 38.3 2.8 0.00021 28.9 -0.2 13 154-166 8-22 (102)
2 d1rvv1_ c.16.1.1 (1:) Lumazine 31.8 10 0.00076 27.6 2.1 37 154-191 109-153 (154)
3 d1c2ya_ c.16.1.1 (A:) Lumazine 27.9 29 0.0021 25.1 4.0 37 154-191 109-153 (155)
4 d1ykha1 a.252.1.2 (A:111-205) 24.4 27 0.002 23.3 3.0 44 11-54 2-52 (95)
5 d1di0a_ c.16.1.1 (A:) Lumazine 22.3 10 0.00074 27.4 0.4 37 154-191 99-146 (148)
6 d2cvea1 d.14.1.11 (A:2-124) Hy 22.3 27 0.002 24.3 2.8 26 156-184 90-117 (123)
7 d1nqua_ c.16.1.1 (A:) Lumazine 22.2 30 0.0022 24.9 3.1 38 153-191 108-153 (154)
8 d1seza2 d.16.1.5 (A:330-441) P 20.5 14 0.001 24.9 0.9 15 152-166 17-31 (112)
9 d1vf6a_ a.194.1.1 (A:) Associa 18.1 78 0.0057 19.0 3.9 28 172-199 25-54 (58)
10 d2f66c1 a.2.17.3 (C:142-206) V 15.3 47 0.0034 20.4 2.3 37 8-44 24-62 (65)
No 1
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=38.26 E-value=2.8 Score=28.92 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=10.2
Q ss_pred CccccccCC--CChh
Q 028552 154 KSLSVFGVL--VSPK 166 (207)
Q Consensus 154 DPL~wFG~L--vP~s 166 (207)
=|.-||||| +||+
T Consensus 8 YPfgWLGiLaeapP~ 22 (102)
T d1k0ia2 8 YPFGWLGLLADTPPV 22 (102)
T ss_dssp EEEEEEEEEESSCCS
T ss_pred ccchhhhhhhcCCCC
Confidence 488999999 6654
No 2
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=31.76 E-value=10 Score=27.56 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=27.9
Q ss_pred CccccccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028552 154 KSLSVFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 191 (207)
Q Consensus 154 DPL~wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 191 (207)
-|+ -||+|++.+..||.... ..|...+++++++.+++
T Consensus 109 ~PV-~~GILt~~n~~QA~~R~~~~~~nKG~eaA~aal~m~~l~r~l 153 (154)
T d1rvv1_ 109 VPV-IFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSF 153 (154)
T ss_dssp SCE-EEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHT
T ss_pred CCE-EEeecCCCCHHHHHHHhcCcccccHHHHHHHHHHHHHHHhhc
Confidence 455 48999999999998853 24666777888887764
No 3
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=27.91 E-value=29 Score=25.07 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=27.1
Q ss_pred CccccccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028552 154 KSLSVFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 191 (207)
Q Consensus 154 DPL~wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 191 (207)
-|+ -||+|+|...-||.... ..|...+++++++..++
T Consensus 109 ~PV-~~GILT~~n~~QA~~R~~~~~~nkG~eaa~aal~m~~l~~~~ 153 (155)
T d1c2ya_ 109 VPC-VFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHH 153 (155)
T ss_dssp SCE-EEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCE-EecccCCCCHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh
Confidence 454 59999999999998775 23566667777776654
No 4
>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.44 E-value=27 Score=23.33 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=34.5
Q ss_pred cccccchhhhhhhHHHHHHHhcHH-------HHHHHHHHHHHHHHHHHHHH
Q 028552 11 AENGIGRQKQVKDEYLLQFLDSLD-------GYLTLLDSLSSTLSQGWLEL 54 (207)
Q Consensus 11 ~~~~~~~~~~~~D~lll~~L~lLd-------~Y~~l~~~L~~~~~~G~~~L 54 (207)
++..|+..+....++++.||+|++ .|....+.|...|.+...-|
T Consensus 2 ~~~k~~ELkkln~sll~nfleLl~~l~~~P~~~~~kvedl~~LfiN~Hhll 52 (95)
T d1ykha1 2 YQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLL 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCccchHhhHHHHHHHHHHHHHHH
Confidence 345567788888999999999874 78888888888888777554
No 5
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=22.32 E-value=10 Score=27.43 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=25.0
Q ss_pred CccccccCCCChhHHHHHHHHH--------H---HHHHHHHHHHHHHHH
Q 028552 154 KSLSVFGVLVSPKLRSAQLSFE--------R---ALETLVEIANLHTTM 191 (207)
Q Consensus 154 DPL~wFG~LvP~sLR~AQ~~F~--------~---ale~~velanlq~~i 191 (207)
-|+ -||+|+|....||...-. + |...+++++++..+|
T Consensus 99 ~Pv-~~gVLt~~n~~QA~~R~~~~~~~~~nKG~EaA~aal~mi~~~~~l 146 (148)
T d1di0a_ 99 VPV-LSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRI 146 (148)
T ss_dssp CCE-EEEEECBSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcE-EEEeccCCCHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHh
Confidence 454 589999998888866432 2 455566777776654
No 6
>d2cvea1 d.14.1.11 (A:2-124) Hypothetical protein TTHA1053, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=22.29 E-value=27 Score=24.35 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=13.4
Q ss_pred cccccCC-C-ChhHHHHHHHHHHHHHHHHHH
Q 028552 156 LSVFGVL-V-SPKLRSAQLSFERALETLVEI 184 (207)
Q Consensus 156 L~wFG~L-v-P~sLR~AQ~~F~~ale~~vel 184 (207)
.||||+. . |.-|-. .|..|...+++-
T Consensus 90 ~RyFGGi~LG~ggl~r---ay~~aa~~al~~ 117 (123)
T d2cvea1 90 VRYFGGVKLGAGGLVR---AYGGVAAEALRR 117 (123)
T ss_dssp EEECCSSCCHHHHHHH---HHHHHHHHHHHH
T ss_pred EEeeCCeecCCchHHH---HHHHHHHHHHHH
Confidence 4999874 3 333422 344555555443
No 7
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=22.25 E-value=30 Score=24.91 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=28.6
Q ss_pred cCccccccCCCChhHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 028552 153 QKSLSVFGVLVSPKLRSAQLS--------FERALETLVEIANLHTTM 191 (207)
Q Consensus 153 ~DPL~wFG~LvP~sLR~AQ~~--------F~~ale~~velanlq~~i 191 (207)
.-|+- ||+|++..+-||... =..|...+++++++.++|
T Consensus 108 ~~Pi~-~GILt~~n~~QA~eR~~~~~~nkG~eaA~aal~mi~l~r~l 153 (154)
T d1nqua_ 108 RKPIT-FGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSL 153 (154)
T ss_dssp TSCEE-EEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEE-EeecCCCCHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhc
Confidence 35765 999999999999984 234666677888877665
No 8
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=20.50 E-value=14 Score=24.92 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=12.1
Q ss_pred ccCccccccCCCChh
Q 028552 152 RQKSLSVFGVLVSPK 166 (207)
Q Consensus 152 ~~DPL~wFG~LvP~s 166 (207)
...|++=||.|||++
T Consensus 17 ~~~~~~GfG~LVP~~ 31 (112)
T d1seza2 17 VKYPLEGFGVLVPSK 31 (112)
T ss_dssp BSSCCCSSEEECCGG
T ss_pred cCCCCCceEEEeCCc
Confidence 446888899999976
No 9
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.12 E-value=78 Score=18.98 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=20.6
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 028552 172 LSFERALETLV--EIANLHTTMLSMFEQVH 199 (207)
Q Consensus 172 ~~F~~ale~~v--elanlq~~i~~~~~~l~ 199 (207)
+.|+.+|+... .|.++|..|..+.+++.
T Consensus 25 ~~lk~~LqSPLF~qiL~lQ~SiqqLk~Qvn 54 (58)
T d1vf6a_ 25 SMFYETLKSPLFNQILTLQQSIKQLKGQLN 54 (58)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666555 89999999888877765
No 10
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.27 E-value=47 Score=20.40 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=25.4
Q ss_pred hcccccccchh--hhhhhHHHHHHHhcHHHHHHHHHHHH
Q 028552 8 KGNAENGIGRQ--KQVKDEYLLQFLDSLDGYLTLLDSLS 44 (207)
Q Consensus 8 ~~~~~~~~~~~--~~~~D~lll~~L~lLd~Y~~l~~~L~ 44 (207)
+.-+|++.... ...+|..+-+||+.=-+|...|+.|.
T Consensus 24 s~~l~~~~r~~~~s~elD~Fi~qYl~~RTeYH~rREKLa 62 (65)
T d2f66c1 24 SSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLA 62 (65)
T ss_dssp HHHHHHHCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444333 34488889999999999988888775
Done!