BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028553
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OX1|A Chain A, Archaeal Dehydroquinase
 pdb|2OX1|B Chain B, Archaeal Dehydroquinase
 pdb|2OX1|C Chain C, Archaeal Dehydroquinase
 pdb|2OX1|D Chain D, Archaeal Dehydroquinase
          Length = 196

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 84  AKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWEL 140
           A+V KE++L      D G +   ++++R+E++ R  + +NP    L+SDL +  ++ 
Sbjct: 34  ARVDKEKILTCRRVSD-GGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSAFDF 89


>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
 pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
          Length = 623

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
 pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
          Length = 623

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
 pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
 pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
 pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
 pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
 pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
          Length = 623

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
 pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
 pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
 pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
          Length = 623

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
 pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
 pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
 pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
 pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
          Length = 623

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
           T169gE542KV546C
          Length = 623

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
 pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
 pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
 pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
 pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
 pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
          Length = 623

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
          Length = 623

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
 pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
 pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
          Length = 623

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
 pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
          Length = 623

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
 pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
           Mutant
          Length = 623

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
 pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
          Length = 623

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
           Mutant
 pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
           2- Fluoro-2-Deoxy-D-Glucose
 pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
           Adduct
 pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
           Adduct
 pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
           3-Deoxy-3-Fluoro-Beta-D-Glucose
          Length = 623

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
          Length = 623

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N  T   +       F QIP+ A
Sbjct: 194 EWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRD---FQQIPLAA 243


>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp.
 pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
           Fungus Peniophora Sp
          Length = 622

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N     A+  +    F QIP+ A
Sbjct: 193 EWDRLYTKAESYFQTGTDQFKESIRHNLVLN---KLAEEYKGQRDFQQIPLAA 242


>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
           2-Oxidase From The White-Rot Fungus Peniophora Sp.,
           Thermostability Mutant E542k
          Length = 595

 Score = 27.7 bits (60), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N     A+  +    F QIP+ A
Sbjct: 166 EWDRLYTKAESYFQTGTDQFKESIRHNLVLN---KLAEEYKGQRDFQQIPLAA 215


>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
           2-Oxidase From The White-Rot Fungus Peniophora Sp
          Length = 595

 Score = 27.7 bits (60), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 137 KWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGPFFNQIPVKA 189
           +W+ +YT ++S  QT   +F  S+R+   +N     A+  +    F QIP+ A
Sbjct: 166 EWDRLYTKAESYFQTGTDQFKESIRHNLVLN---KLAEEYKGQRDFQQIPLAA 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,983,939
Number of Sequences: 62578
Number of extensions: 170598
Number of successful extensions: 500
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 19
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)