Query 028553
Match_columns 207
No_of_seqs 145 out of 350
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 13:19:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 4E-31 8.8E-36 219.7 12.6 95 85-179 1-99 (198)
2 PF05973 Gp49: Phage derived p 50.0 56 0.0012 23.7 5.5 42 105-146 7-50 (91)
3 PF12283 Protein_K: Bacterioph 47.4 27 0.00059 24.3 3.1 37 83-122 4-41 (56)
4 TIGR02116 toxin_Txe_YoeB toxin 43.6 31 0.00068 24.7 3.2 32 106-138 17-48 (80)
5 PF12644 DUF3782: Protein of u 37.4 43 0.00094 22.9 3.0 37 81-123 7-43 (64)
6 PF06251 Caps_synth_GfcC: Caps 36.7 29 0.00064 29.8 2.5 64 82-147 53-129 (229)
7 PF14834 GST_C_4: Glutathione 34.9 52 0.0011 26.5 3.4 40 97-140 33-72 (117)
8 smart00550 Zalpha Z-DNA-bindin 31.4 91 0.002 21.8 3.9 56 83-141 3-65 (68)
9 PHA00440 host protein H-NS-int 31.2 1.1E+02 0.0023 24.0 4.5 47 70-116 8-54 (98)
10 KOG1513 Nuclear helicase MOP-3 30.3 41 0.00089 35.6 2.7 35 82-121 774-808 (1300)
11 PF11247 DUF2675: Protein of u 26.6 1.2E+02 0.0026 23.7 4.1 47 70-116 8-54 (98)
12 cd01645 RT_Rtv RT_Rtv: Reverse 26.1 1.5E+02 0.0032 24.9 5.0 44 100-143 5-56 (213)
13 cd03715 RT_ZFREV_like RT_ZFREV 24.7 1.1E+02 0.0024 25.3 4.0 44 100-143 5-57 (210)
14 PF07240 Turandot: Stress-indu 24.4 1.7E+02 0.0036 22.3 4.4 47 89-138 13-60 (85)
15 TIGR00053 addiction module tox 24.0 75 0.0016 22.9 2.5 32 107-138 23-54 (89)
16 PF07278 DUF1441: Protein of u 22.7 1.1E+02 0.0025 25.5 3.6 37 84-120 103-139 (152)
17 PF07624 PSD2: Protein of unkn 22.2 1.4E+02 0.003 21.4 3.5 23 101-123 37-59 (76)
18 PF05015 Plasmid_killer: Plasm 21.3 3.4E+02 0.0075 20.0 5.7 31 92-122 10-40 (93)
19 TIGR02530 flg_new flagellar op 21.0 1.3E+02 0.0028 23.4 3.3 27 99-125 27-53 (96)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.97 E-value=4e-31 Score=219.73 Aligned_cols=95 Identities=42% Similarity=0.669 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCcEEEEEeecccccccc---cCCcceeec
Q 028553 85 KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKWELIYTTSQSILQT---QRPRFLRSV 160 (207)
Q Consensus 85 ~~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LEalnPt~~P~~s-~lL~G~W~LiYTTs~~ilg~---~~~p~l~vG 160 (207)
+++|++||+++++++||+.+++++|++|+++|++||++||+++|+++ ++|+|+|+|+|||+.++.+. .+.+++.+|
T Consensus 1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~ 80 (198)
T PF04755_consen 1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG 80 (198)
T ss_pred ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence 37999999999999999999999999999999999999999999998 99999999999999988753 556778999
Q ss_pred eeeEEEEcCCCeeeeeeeC
Q 028553 161 RNYQAINVDTLRAQNMESG 179 (207)
Q Consensus 161 ~i~Q~ID~~~~rv~Nvv~f 179 (207)
+|||+||.+++++.|++.+
T Consensus 81 ~v~Q~id~~~~~~~N~v~~ 99 (198)
T PF04755_consen 81 RVFQTIDADNGRVENVVEL 99 (198)
T ss_pred ceEEEEECCCceEEEEEEE
Confidence 9999999999999999984
No 2
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=50.00 E-value=56 Score=23.70 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CcEEEEEeeccc
Q 028553 105 TPEDQQRVEQIARKLEGVNPTKEPLKSDLL--NGKWELIYTTSQ 146 (207)
Q Consensus 105 s~~~r~~Ie~lI~~LEalnPt~~P~~s~lL--~G~W~LiYTTs~ 146 (207)
++..+++|...++.|+..+|...+-....+ .|-|||......
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 567789999999999888854433333344 699999987664
No 3
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=47.37 E-value=27 Score=24.31 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHhccCCC-CCCCCHHHHHHHHHHHHHHHhc
Q 028553 83 DAKVLKEELLEAIAPLDR-GAEATPEDQQRVEQIARKLEGV 122 (207)
Q Consensus 83 ~~~~lK~~LL~aia~t~R-G~~as~~~r~~Ie~lI~~LEal 122 (207)
.+.-+|++||-++...+| |+.+.. ++|.....+||.+
T Consensus 4 k~tli~qellll~yelnrsgllven---e~i~~~l~~le~l 41 (56)
T PF12283_consen 4 KTTLIKQELLLLTYELNRSGLLVEN---EEIQSQLKQLEKL 41 (56)
T ss_pred hHHHHHHHHHHHHHHhccccccccc---HHHHHHHHHHHHH
Confidence 455789999999999988 666543 4577777888875
No 4
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=43.57 E-value=31 Score=24.70 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEE
Q 028553 106 PEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKW 138 (207)
Q Consensus 106 ~~~r~~Ie~lI~~LEalnPt~~P~~s~lL~G~W 138 (207)
++.+++|.++|++|+ .||.+.......|.|.|
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~~~~~~~L~G~~ 48 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKGKGKPEPLKGDL 48 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCcccCCCCC
Confidence 567888999999886 46653222234455543
No 5
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=37.41 E-value=43 Score=22.91 Aligned_cols=37 Identities=30% Similarity=0.264 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcC
Q 028553 81 GKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVN 123 (207)
Q Consensus 81 ~~~~~~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LEaln 123 (207)
.+.+.++|++|-+..+. +++++.+.|++.|+.|.+.+
T Consensus 7 ~~~i~a~~e~l~~~~~~------lt~e~~~~l~~~~~al~~~~ 43 (64)
T PF12644_consen 7 EDEIMATKEELEELEER------LTKEDKKRLEEYIDALGARW 43 (64)
T ss_pred HHHHHHHHHHHHHHHhh------cCHHHHHHHHHHHHHHHHHh
Confidence 34677888888777665 78899999999999998865
No 6
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=36.72 E-value=29 Score=29.79 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCC-------------CCCCCCCCcEEEEEeecccc
Q 028553 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKE-------------PLKSDLLNGKWELIYTTSQS 147 (207)
Q Consensus 82 ~~~~~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LEalnPt~~-------------P~~s~lL~G~W~LiYTTs~~ 147 (207)
...+..|++|+..++.... ....+..+.+..++++|+....+.+ +...+.|.|..+|..-..+.
T Consensus 53 ~~~~~~~~~ll~~L~~l~~--~~~~~~~~~~~~l~~qL~~~~~~gR~~i~lD~d~~r~~~~~n~~L~ggd~L~vP~rp~ 129 (229)
T PF06251_consen 53 AEAEQQKQQLLAQLAQLEQ--SADSDQAAAAQQLIQQLQSLEATGRVVINLDPDWVRLNPEYNPLLEGGDRLYVPPRPN 129 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTT--B----S----TTS-EESTTSS-B-ECEEEEE-----S
T ss_pred HHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhccccceEEEecCHHHhhccccCCCcCCCCcEEEECCCCC
Confidence 5678888888887776543 4456778889999999988754322 22347889999999988876
No 7
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=34.93 E-value=52 Score=26.45 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=23.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEE
Q 028553 97 PLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWEL 140 (207)
Q Consensus 97 ~t~RG~~as~~~r~~Ie~lI~~LEalnPt~~P~~s~lL~G~W~L 140 (207)
...+....+++-+++|++|+...|.+-+... +-|.|+|-.
T Consensus 33 ~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~----~~LFGewsI 72 (117)
T PF14834_consen 33 RGARKPPLSEAAQAAAQKLIAVAERLLADGG----PNLFGEWSI 72 (117)
T ss_dssp S--------HHHHHHHHHHHHHHHHHTTT------SSTTSS--H
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhccCC----CCccccchH
Confidence 3445567889999999999999999975432 459999954
No 8
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=31.42 E-value=91 Score=21.82 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHhccCCC-CCCCCH------HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE
Q 028553 83 DAKVLKEELLEAIAPLDR-GAEATP------EDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELI 141 (207)
Q Consensus 83 ~~~~lK~~LL~aia~t~R-G~~as~------~~r~~Ie~lI~~LEalnPt~~P~~s~lL~G~W~Li 141 (207)
+.+..++++|+++...+. |+.+.+ -.+..|..++..||..+-... ...-.+.|++-
T Consensus 3 ~~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~---~~~~~~~W~i~ 65 (68)
T smart00550 3 TQDSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK---QGGTPPLWKLT 65 (68)
T ss_pred CchHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe---cCCCCCceEee
Confidence 346788999999998754 555543 346789999999999875421 11233788874
No 9
>PHA00440 host protein H-NS-interacting protein
Probab=31.25 E-value=1.1e+02 Score=23.98 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=34.5
Q ss_pred eeecccccccCcccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 028553 70 SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIA 116 (207)
Q Consensus 70 ~~s~~p~~~~~~~~~~~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI 116 (207)
.|||---.-..++.-+.+++.|+++..+.+.|-..++-||.-+...+
T Consensus 8 kVSFdvtA~~~se~e~~~~e~l~~Lak~v~~GE~~~~~~re~lvqaL 54 (98)
T PHA00440 8 KVSFDVTAKMDSETEAILEEDILDLAKQAGAGEEVNPKDKELLVQAL 54 (98)
T ss_pred EEEEEEEEEeChHHHHHHHHHHHHHHhhcCCcccCChHHHHHHHHHH
Confidence 45554444444556678999999999999999988998887655443
No 10
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=30.32 E-value=41 Score=35.62 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHh
Q 028553 82 KDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEG 121 (207)
Q Consensus 82 ~~~~~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LEa 121 (207)
+.++++|++||++|..++|-++. ..++++|++|--
T Consensus 774 er~~~mkeeLL~kverLg~~LP~-----NTLDqLIdelGG 808 (1300)
T KOG1513|consen 774 ERVERMKEELLDKVERLGRELPP-----NTLDQLIDELGG 808 (1300)
T ss_pred HHHHHHHHHHHHHHHHhcccCCc-----chHHHHHHHhCC
Confidence 45678999999999999887776 457788888753
No 11
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=26.64 E-value=1.2e+02 Score=23.68 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=35.1
Q ss_pred eeecccccccCcccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 028553 70 SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIA 116 (207)
Q Consensus 70 ~~s~~p~~~~~~~~~~~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI 116 (207)
.|||---+--.++..+.+.+.||++..+.+.|-.+++-||+-+..++
T Consensus 8 KVSF~vtav~~se~e~~~~e~ll~Lak~v~~GE~~~~~~re~l~qaL 54 (98)
T PF11247_consen 8 KVSFDVTAVIDSEQEEEFEEDLLELAKKVGAGEKVSGFQREMLVQAL 54 (98)
T ss_pred EEEEEEEEEeCHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHH
Confidence 45554444445667789999999999999999988888877655443
No 12
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=26.09 E-value=1.5e+02 Score=24.91 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=31.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCCC-----CCCCcEEEEEee
Q 028553 100 RGAEATPEDQQRVEQIARKLEGVN---PTKEPLKS-----DLLNGKWELIYT 143 (207)
Q Consensus 100 RG~~as~~~r~~Ie~lI~~LEaln---Pt~~P~~s-----~lL~G~W~LiYT 143 (207)
|.-..++++++.|.+.|++|-..+ |...|-.+ ++-+|+||++.-
T Consensus 5 ~~~p~~~~~~~~~~~~i~~ll~~g~I~~~~s~~~sp~~~v~K~~g~~R~~~D 56 (213)
T cd01645 5 KQWPLTEEKLEALTELVTEQLKEGHIEPSTSPWNTPVFVIKKKSGKWRLLHD 56 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCceecCCCCCcCcEEEEEcCCCCeEEEec
Confidence 456788999999999999998865 33333222 345799999853
No 13
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=24.66 E-value=1.1e+02 Score=25.35 Aligned_cols=44 Identities=11% Similarity=0.276 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC---CCCCCCCC-----CCCCc-EEEEEee
Q 028553 100 RGAEATPEDQQRVEQIARKLEGVN---PTKEPLKS-----DLLNG-KWELIYT 143 (207)
Q Consensus 100 RG~~as~~~r~~Ie~lI~~LEaln---Pt~~P~~s-----~lL~G-~W~LiYT 143 (207)
+.-..++++++.+++.|++|+..+ |...|-.+ ++=+| +||++.-
T Consensus 5 ~~~~~~~~~~~~~~~~v~~ll~~G~I~~~~s~~~sp~~~V~Kk~g~~~R~~vD 57 (210)
T cd03715 5 KQYPLPREAREGITPHIQELLEAGILVPCQSPWNTPILPVKKPGGNDYRMVQD 57 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeECCCCCCCCceEEEEeCCCCcceEEEE
Confidence 345678899999999999999976 33223222 34478 9999854
No 14
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=24.38 E-value=1.7e+02 Score=22.27 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=33.3
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCcEE
Q 028553 89 EELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKS-DLLNGKW 138 (207)
Q Consensus 89 ~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LEalnPt~~P~~s-~lL~G~W 138 (207)
.+|+..-...-.-+..++++|+.+++.|.+-+..|- -.+. |.--|.|
T Consensus 13 ~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~---lVDGvPaQGG~~ 60 (85)
T PF07240_consen 13 QELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN---LVDGVPAQGGFW 60 (85)
T ss_pred HHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh---cccCcCCCCCch
Confidence 455555555555567889999999999999999874 2343 4555666
No 15
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=23.98 E-value=75 Score=22.91 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEE
Q 028553 107 EDQQRVEQIARKLEGVNPTKEPLKSDLLNGKW 138 (207)
Q Consensus 107 ~~r~~Ie~lI~~LEalnPt~~P~~s~lL~G~W 138 (207)
.++++|.++|++|..-+|.+.......|.|.|
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~ 54 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPEHYKDHPLRGPW 54 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCcccCCccCcCCc
Confidence 45677888888888754443333323455544
No 16
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=22.74 E-value=1.1e+02 Score=25.45 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHH
Q 028553 84 AKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLE 120 (207)
Q Consensus 84 ~~~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LE 120 (207)
+..+++.|...-.-..|....+|+++.+|..+|+.|-
T Consensus 103 ~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR 139 (152)
T PF07278_consen 103 AKAVVQVLETLPDILERDAGLPPEQVARVQSVIDDLR 139 (152)
T ss_pred HHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3444555555555567899999999999999999875
No 17
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=22.19 E-value=1.4e+02 Score=21.45 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcC
Q 028553 101 GAEATPEDQQRVEQIARKLEGVN 123 (207)
Q Consensus 101 G~~as~~~r~~Ie~lI~~LEaln 123 (207)
|...+..|+..|+++++++++-+
T Consensus 37 GR~~~~~D~~~i~~i~~~~~~~~ 59 (76)
T PF07624_consen 37 GRPLEFSDRCEIDRIVEAFKANG 59 (76)
T ss_pred CCCCCcchHHHHHHHHHHHHHcC
Confidence 55566799999999999998865
No 18
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=21.26 E-value=3.4e+02 Score=20.02 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=19.7
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHHHHHhc
Q 028553 92 LEAIAPLDRGAEATPEDQQRVEQIARKLEGV 122 (207)
Q Consensus 92 L~aia~t~RG~~as~~~r~~Ie~lI~~LEal 122 (207)
|+.+...++-....++-...+...+++|++.
T Consensus 10 l~~l~~~~~~k~~~~~~~~~~~~~L~~L~aa 40 (93)
T PF05015_consen 10 LEKLFEDGKTKKIPADIAKKLRRRLDQLDAA 40 (93)
T ss_pred HHHHHCCCCcCCcCHHHHHHHHHHHHHHHhC
Confidence 4445555444455566677777777777775
No 19
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=21.00 E-value=1.3e+02 Score=23.38 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 028553 99 DRGAEATPEDQQRVEQIARKLEGVNPT 125 (207)
Q Consensus 99 ~RG~~as~~~r~~Ie~lI~~LEalnPt 125 (207)
.||+..++++.++|++.|++.+..+-.
T Consensus 27 ~R~I~l~~~~~~~i~~av~~A~~KG~k 53 (96)
T TIGR02530 27 ERNISINPDDWKKLLEAVEEAESKGVK 53 (96)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 489999999999999999999998743
Done!