Query 028553
Match_columns 207
No_of_seqs 145 out of 350
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 22:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a6s_A Toxin YOEB; YEFM, antit 46.6 54 0.0019 21.7 5.9 20 106-126 21-40 (84)
2 2kvu_A MKL/myocardin-like prot 45.8 58 0.002 23.2 5.9 40 81-126 28-67 (75)
3 1z8m_A Conserved hypothetical 39.0 21 0.00073 24.1 2.8 16 110-125 25-40 (88)
4 1qbj_A Protein (double-strande 35.8 54 0.0018 23.0 4.5 57 85-144 9-73 (81)
5 3g5o_B Uncharacterized protein 31.8 47 0.0016 23.7 3.8 20 105-125 34-54 (102)
6 3oei_C RELK (toxin RV3358); to 30.9 50 0.0017 24.1 3.8 19 106-125 33-51 (96)
7 4gzv_A Hypothetical protein; A 27.8 1.2E+02 0.0041 24.0 5.7 46 131-180 9-54 (142)
8 2heo_A Z-DNA binding protein 1 25.5 21 0.00071 23.8 0.8 51 85-140 9-65 (67)
9 1qgp_A Protein (double strande 25.5 69 0.0024 21.9 3.6 53 86-141 14-74 (77)
10 3ph0_A ASCE; type III secretio 22.9 82 0.0028 22.0 3.4 41 82-122 15-64 (67)
11 1wmi_A RELE, hypothetical prot 21.8 91 0.0031 20.2 3.5 19 106-125 20-38 (90)
12 4i95_A Putative uncharacterize 21.1 1.9E+02 0.0064 22.9 5.6 45 132-180 10-54 (142)
13 1oyi_A Double-stranded RNA-bin 21.0 53 0.0018 23.5 2.2 43 80-124 11-59 (82)
No 1
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=46.63 E-value=54 Score=21.75 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 028553 106 PEDQQRVEQIARKLEGVNPTK 126 (207)
Q Consensus 106 ~~~r~~Ie~lI~~LEalnPt~ 126 (207)
....+.|.++|+.|.. ||.+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 4456888888988865 5643
No 2
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=45.80 E-value=58 Score=23.17 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 028553 81 GKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTK 126 (207)
Q Consensus 81 ~~~~~~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LEalnPt~ 126 (207)
...+.+||++|-. ||+.++=.+.+-|+++.+.++..++.+
T Consensus 28 klkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~ 67 (75)
T 2kvu_A 28 DMKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVP 67 (75)
T ss_dssp TSCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCS
T ss_pred HCcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 4678999998865 777776666777888888877766543
No 3
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=38.98 E-value=21 Score=24.11 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcCCC
Q 028553 110 QRVEQIARKLEGVNPT 125 (207)
Q Consensus 110 ~~Ie~lI~~LEalnPt 125 (207)
..+.++++.|...+|.
T Consensus 25 ~~~~~~i~~l~~~~p~ 40 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPL 40 (88)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5688888888654664
No 4
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=35.82 E-value=54 Score=22.96 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhccCCCCCCCCHH--------HHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEeec
Q 028553 85 KVLKEELLEAIAPLDRGAEATPE--------DQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTT 144 (207)
Q Consensus 85 ~~lK~~LL~aia~t~RG~~as~~--------~r~~Ie~lI~~LEalnPt~~P~~s~lL~G~W~LiYTT 144 (207)
.+..+++|+++...+-|..++.. .+..|.+.+..||..+-...-- . =.|.|++.-..
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g-~--~~~~W~i~~~~ 73 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-G--TPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES-S--SSCEEEEC---
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-C--CCCeeEEeCcH
Confidence 35677888888876655555532 2678999999999986432110 1 12899986544
No 5
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=31.80 E-value=47 Score=23.73 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHH-HHHHhcCCC
Q 028553 105 TPEDQQRVEQIA-RKLEGVNPT 125 (207)
Q Consensus 105 s~~~r~~Ie~lI-~~LEalnPt 125 (207)
.+..++.|.+.| ++|+ .||.
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P~ 54 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REPL 54 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCTT
T ss_pred CHHHHHHHHHHHHHHHH-hCcc
Confidence 456778888888 7775 5665
No 6
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=30.91 E-value=50 Score=24.07 Aligned_cols=19 Identities=11% Similarity=0.424 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 028553 106 PEDQQRVEQIARKLEGVNPT 125 (207)
Q Consensus 106 ~~~r~~Ie~lI~~LEalnPt 125 (207)
+..+++|.++|++|+. ||.
T Consensus 33 k~~~krI~~~I~~l~~-nP~ 51 (96)
T 3oei_C 33 RKTARRITRLIGEIQR-DPF 51 (96)
T ss_dssp HHHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHh-CCC
Confidence 4678899999999874 664
No 7
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=27.83 E-value=1.2e+02 Score=24.02 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=26.8
Q ss_pred CCCCCcEEEEEeecccccccccCCcceeeceeeEEEEcCCCeeeeeeeCC
Q 028553 131 SDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180 (207)
Q Consensus 131 s~lL~G~W~LiYTTs~~ilg~~~~p~l~vG~i~Q~ID~~~~rv~Nvv~f~ 180 (207)
...|.|.|++.+--+... +.+.-+..+.++.+|..+ |+..|++-.+
T Consensus 9 ~~~L~GvWQ~c~y~~~~~---~~~~~l~~s~~~KIlS~D-gtF~N~~m~~ 54 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSESP---DVPGALKPSNTFKVLSDD-GRIVNFTIIP 54 (142)
T ss_dssp SCCCCEEEEEEEEEESST---TSCCEEEEEEEEEEECTT-SEEEEEECCT
T ss_pred cccceEEeEEeeEeecCC---CCCceEeecCceEEECCC-CcEEEEEEeC
Confidence 467999999984333210 111123446677777655 5888876543
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=25.52 E-value=21 Score=23.79 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccCCCCCCCCH------HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEE
Q 028553 85 KVLKEELLEAIAPLDRGAEATP------EDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWEL 140 (207)
Q Consensus 85 ~~lK~~LL~aia~t~RG~~as~------~~r~~Ie~lI~~LEalnPt~~P~~s~lL~G~W~L 140 (207)
.+.++++|++++..++.+..++ -.|..|..+|..|+..+-... .-.|.|+|
T Consensus 9 ~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~-----~~~G~y~l 65 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS-----PSPKYWSI 65 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-----EETTEEEE
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec-----CCCceEee
Confidence 3568889999976433332222 237889999999999875321 12377875
No 9
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.47 E-value=69 Score=21.90 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=33.5
Q ss_pred HHHHHHHHHhccCCCCCCCCHH--------HHHHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE
Q 028553 86 VLKEELLEAIAPLDRGAEATPE--------DQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELI 141 (207)
Q Consensus 86 ~lK~~LL~aia~t~RG~~as~~--------~r~~Ie~lI~~LEalnPt~~P~~s~lL~G~W~Li 141 (207)
+..+++|.++.....|-.++.. .+..|...+..||..+-...-.. =.|.|++.
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~---~~~~W~i~ 74 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWKIA 74 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS---SSCEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCceEec
Confidence 4457788888777654444432 26789999999999764321111 12899863
No 10
>3ph0_A ASCE; type III secretion system, chapero; 2.40A {Aeromonas hydrophila} PDB: 2q1k_A
Probab=22.93 E-value=82 Score=21.98 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHHhccC----CCCCCCCH-----HHHHHHHHHHHHHHhc
Q 028553 82 KDAKVLKEELLEAIAPL----DRGAEATP-----EDQQRVEQIARKLEGV 122 (207)
Q Consensus 82 ~~~~~lK~~LL~aia~t----~RG~~as~-----~~r~~Ie~lI~~LEal 122 (207)
..+.+++.+|.+|.... +||..... .|..+|+..+.-||..
T Consensus 15 ~~~~~i~~~L~qAl~~vKr~L~~G~~pqqyQ~~~~Q~~A~eAal~Iie~~ 64 (67)
T 3ph0_A 15 VFARELHAQLVQALGDVKRRLLRGGTQQQYQQWQQEADAIEAGLNIIEKI 64 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999998875 45655553 5677888888888865
No 11
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=21.80 E-value=91 Score=20.22 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 028553 106 PEDQQRVEQIARKLEGVNPT 125 (207)
Q Consensus 106 ~~~r~~Ie~lI~~LEalnPt 125 (207)
+..+++|.+.|+.|+. +|.
T Consensus 20 ~~~~~~i~~~i~~L~~-~P~ 38 (90)
T 1wmi_A 20 KAHYRRFLEFRDILEY-EPV 38 (90)
T ss_dssp HHHHHHHHHHHHHHTT-CSC
T ss_pred HHHHHHHHHHHHHHHh-CCC
Confidence 4556778888888855 454
No 12
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=21.08 E-value=1.9e+02 Score=22.92 Aligned_cols=45 Identities=24% Similarity=0.438 Sum_probs=28.7
Q ss_pred CCCCcEEEEEeecccccccccCCcceeeceeeEEEEcCCCeeeeeeeCC
Q 028553 132 DLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNMESGP 180 (207)
Q Consensus 132 ~lL~G~W~LiYTTs~~ilg~~~~p~l~vG~i~Q~ID~~~~rv~Nvv~f~ 180 (207)
..|.|.|+|..--+.. .+-+.-++.+..+.+|..+ |+..|+.-.+
T Consensus 10 ~~L~GvWQ~C~y~s~~---pd~~g~L~psn~lKIlSdD-gtF~Ni~m~~ 54 (142)
T 4i95_A 10 AHLQGIWQLCHYVSEN---PDIPGVLKPSNTFKVLSDD-GRIVNFTIRP 54 (142)
T ss_dssp CSCCEEEEEEEEECSS---TTSCCEEEEEEEEEEECTT-SEEEEEECCT
T ss_pred ccceeEeEEEEEecCC---CCCceEeccCccEEEEcCC-CcEEEEEEec
Confidence 5699999998654422 1122234556677777654 6899987664
No 13
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.05 E-value=53 Score=23.48 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=31.1
Q ss_pred CcccHHHHHHHHHHHhccCCCCCCCCH------HHHHHHHHHHHHHHhcCC
Q 028553 80 KGKDAKVLKEELLEAIAPLDRGAEATP------EDQQRVEQIARKLEGVNP 124 (207)
Q Consensus 80 ~~~~~~~lK~~LL~aia~t~RG~~as~------~~r~~Ie~lI~~LEalnP 124 (207)
++.+..+.++++|+.+.. +|..+.+ -.+..|...+..||..+-
T Consensus 11 ~d~~~~~~~~~IL~lL~~--~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~ 59 (82)
T 1oyi_A 11 DERSNAEIVCEAIKTIGI--EGATAAQLTRQLNMEKREVNKALYDLQRSAM 59 (82)
T ss_dssp --CCSHHHHHHHHHHHSS--STEEHHHHHHHSSSCHHHHHHHHHHHHHHTS
T ss_pred cccchHHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 456889999999999994 4533332 236889999999998753
Done!