Query 028553
Match_columns 207
No_of_seqs 145 out of 350
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 22:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028553.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028553hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 37.2 13 0.00094 31.9 3.9 43 101-143 21-74 (427)
2 d2co7b2 b.7.2.1 (B:136-220) Pe 21.8 35 0.0026 22.3 3.2 26 179-204 48-73 (85)
3 d1qpza1 a.35.1.5 (A:2-58) Puri 20.1 36 0.0026 21.0 2.7 18 103-120 26-43 (57)
4 d2hsga1 a.35.1.5 (A:2-58) Gluc 19.5 37 0.0027 20.9 2.7 18 103-120 27-44 (57)
5 d2gyc31 a.108.1.1 (3:2-48) Rib 19.0 48 0.0035 20.0 3.0 30 88-126 3-32 (47)
6 d1rmva_ a.24.5.1 (A:) Ribgrass 17.9 1.3E+02 0.0097 22.2 6.1 79 63-146 48-154 (156)
7 d2g9wa1 a.4.5.39 (A:3-124) Hyp 17.0 39 0.0028 23.2 2.6 18 104-121 105-122 (122)
8 d2a6sa1 d.298.1.1 (A:1-83) Tox 16.8 62 0.0045 21.3 3.6 45 86-138 8-56 (83)
9 d2ywqa1 d.204.1.1 (A:1-95) Rib 16.2 32 0.0023 22.4 1.9 28 98-125 7-34 (95)
10 d1uxda_ a.35.1.5 (A:) Fructose 15.0 40 0.0029 20.8 2.0 18 103-120 29-46 (59)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=37.25 E-value=13 Score=31.93 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCC-----CCCCCCCC-----C-CcEEEEEee
Q 028553 101 GAEATPEDQQRVEQIARKLEGVNPT-----KEPLKSDL-----L-NGKWELIYT 143 (207)
Q Consensus 101 G~~as~~~r~~Ie~lI~~LEalnPt-----~~P~~s~l-----L-~G~W~LiYT 143 (207)
--..+++++++|.++|++|+..+-. ..|-+++. = .|+||++--
T Consensus 21 q~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 21 QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEEc
Confidence 3467899999999999999998733 33444433 2 499999864
No 2
>d2co7b2 b.7.2.1 (B:136-220) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}
Probab=21.82 E-value=35 Score=22.28 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=17.3
Q ss_pred CCCcceecccCCCCCceeeeeEeecC
Q 028553 179 GPFFNQIPVKAPNTARGELETTYLDE 204 (207)
Q Consensus 179 f~ff~~l~i~~P~~~~GwlditYLDe 204 (207)
++.|....+++|....|.+..+|+||
T Consensus 48 v~P~s~~~~~~~~~~~~~v~~~~InD 73 (85)
T d2co7b2 48 VPPFADKTLNMPGSAHGDIEWRVITD 73 (85)
T ss_dssp BCTTEEEEEC-----CCCEEEEEBCT
T ss_pred ECCCCceEEecCCCCcceEEEEEEEe
Confidence 45577777888888889999999998
No 3
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.05 E-value=36 Score=21.01 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028553 103 EATPEDQQRVEQIARKLE 120 (207)
Q Consensus 103 ~as~~~r~~Ie~lI~~LE 120 (207)
.++++.|++|.+++++|.
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 578999999999999874
No 4
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=19.52 E-value=37 Score=20.93 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028553 103 EATPEDQQRVEQIARKLE 120 (207)
Q Consensus 103 ~as~~~r~~Ie~lI~~LE 120 (207)
..+++.|++|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 578999999999999884
No 5
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=18.97 E-value=48 Score=20.01 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=23.6
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 028553 88 KEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTK 126 (207)
Q Consensus 88 K~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LEalnPt~ 126 (207)
|+++|++|+... --+|-++|..+|......
T Consensus 3 ke~Ileaia~MS---------VmdvveLi~amEEKFGVs 32 (47)
T d2gyc31 3 KDQIIEAVAAMS---------VMDVVELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHSC---------HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHHhCcc
Confidence 889999998863 367888999999876554
No 6
>d1rmva_ a.24.5.1 (A:) Ribgrass mosaic virus {Ribgrass mosaic virus [TaxId: 51680]}
Probab=17.88 E-value=1.3e+02 Score=22.17 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=53.5
Q ss_pred ccccccceee---cccc----cccCcccHHHHHHHHHHHhccCCCCC--------------CCCH-------HHHHHHHH
Q 028553 63 ASQKWRASVS---FFPA----FLNKGKDAKVLKEELLEAIAPLDRGA--------------EATP-------EDQQRVEQ 114 (207)
Q Consensus 63 ~~~~wr~~~s---~~p~----~~~~~~~~~~lK~~LL~aia~t~RG~--------------~as~-------~~r~~Ie~ 114 (207)
-.+.|+..++ -||. ++....-++.+-..||++...-+|=+ .|+. +-|.+|+.
T Consensus 48 ~~~~~~~v~~~tvRFP~~~f~V~~~~~~l~pl~~aLl~a~DTRNRIIEVen~~nPttaE~l~AT~RvDDATvAir~~I~n 127 (156)
T d1rmva_ 48 FANLLSTIVAPNQRFPDTGFRVYVNSAVIKPLYEALMKSFDTRNRIIETEEESRPSASEVANATQRVDDATVAIRSQIQL 127 (156)
T ss_dssp HHHHCCCCCCSSSCCCSSCCEECTTSTTHHHHHHHHHHHTSCCCCCCCBSSSBCTTCSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred HHhhcccCCCcceecCCCceEEEecCchHHHHHHHHHhhhccccceEEccCCCCCchHHHhhhhhccchHHHHHHHHHHH
Confidence 3456766665 4555 45567888999999999998888722 2222 45888999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCcEEEEEeeccc
Q 028553 115 IARKLEGVNPTKEPLKSDLLNGKWELIYTTSQ 146 (207)
Q Consensus 115 lI~~LEalnPt~~P~~s~lL~G~W~LiYTTs~ 146 (207)
++.+|-.-...-+-+..+ .| |.||+++
T Consensus 128 L~~~L~~Gtg~ynrasFE--s~---l~Wtta~ 154 (156)
T d1rmva_ 128 LLNELSNGHGYMNRAEFE--AI---LPWTTAP 154 (156)
T ss_dssp HHHHHHHTSSEECTTTCC--SS---CCCCSSC
T ss_pred HHHHHhcccceeehhhhh--cc---ceeeccC
Confidence 999998865544444444 34 8888765
No 7
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.00 E-value=39 Score=23.20 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 028553 104 ATPEDQQRVEQIARKLEG 121 (207)
Q Consensus 104 as~~~r~~Ie~lI~~LEa 121 (207)
.++++.++++++|+++|+
T Consensus 105 ls~~el~~L~~ll~~~ea 122 (122)
T d2g9wa1 105 VGADEADALRRALAELEA 122 (122)
T ss_dssp SCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhhC
Confidence 688999999999999986
No 8
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=16.75 E-value=62 Score=21.33 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=26.8
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHhcCCC---CCCCCC-CCCCcEE
Q 028553 86 VLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPT---KEPLKS-DLLNGKW 138 (207)
Q Consensus 86 ~lK~~LL~aia~t~RG~~as~~~r~~Ie~lI~~LEalnPt---~~P~~s-~lL~G~W 138 (207)
.+.+++...... ++...++|+++|+++.. +|. ..|..- -.+.|-|
T Consensus 8 ~A~~d~~~~~~~-------d~k~~kkI~~ll~~i~~-~p~~g~gkpE~Lkg~l~g~w 56 (83)
T d2a6sa1 8 ESWDDYLYWQET-------DKRIVKKINELIKDTRR-TPFEGKGKPEPLKHNLSGFW 56 (83)
T ss_dssp HHHHHHHHHHTT-------CHHHHHHHHHHHHHHHH-STTSSTTCCEECCGGGTTCE
T ss_pred HHHHHHHHHHHh-------CHHHHHHHHHHHHHHHh-CcCCCCCCCccccCCCCCEE
Confidence 445555444322 35778899999999976 443 222221 3567777
No 9
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=16.16 E-value=32 Score=22.41 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=25.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 028553 98 LDRGAEATPEDQQRVEQIARKLEGVNPT 125 (207)
Q Consensus 98 t~RG~~as~~~r~~Ie~lI~~LEalnPt 125 (207)
++|++..++.-++.|++-++.|+...+.
T Consensus 7 tgr~~~lt~al~~~ve~kl~kL~k~~~~ 34 (95)
T d2ywqa1 7 IGRNLEITDAIRDYVEKKLARLDRYQDG 34 (95)
T ss_dssp EEETSCCCHHHHHHHHHHHHGGGGSCSS
T ss_pred EEECCccCHHHHHHHHHHHHHHHHhCCC
Confidence 5688999999999999999999998754
No 10
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.98 E-value=40 Score=20.84 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028553 103 EATPEDQQRVEQIARKLE 120 (207)
Q Consensus 103 ~as~~~r~~Ie~lI~~LE 120 (207)
.++++.|++|.+++++|.
T Consensus 29 ~vs~~tr~rV~~~a~~lg 46 (59)
T d1uxda_ 29 RVSDKTVEKVMAVVREHN 46 (59)
T ss_dssp TCTTTTHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 478999999999999984
Done!