BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028554
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 82/151 (54%), Gaps = 26/151 (17%)
Query: 58 DTFRAPPLPLPYDV---VFGC-----------------PPSTDSESVGETVSGGSFETLA 97
+ FR+ P PLPYD F P +DS++ E+ G +
Sbjct: 75 EAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWAN 134
Query: 98 MCEVVEDADCKTQASS-----LIASPRKSEVSQL-NVFAASEEEDTCPICLEEYDTENPK 151
+ D D K + SS ++ S KS ++ N++ SE+ED CP CLEEY +ENPK
Sbjct: 135 NKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPK 194
Query: 152 LITKCEHHFHLSCILEWNERSESCPICDQVL 182
++TKC HHFHLSCI EW ERSE+CP+C +V+
Sbjct: 195 IVTKCSHHFHLSCIYEWMERSENCPVCGKVM 225
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILKDAVFRYVI 194
+D C ICLE + ++P +T C+H +HL CI+EW++RS+ CPIC Q L +L+D + ++
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQ-LFVLRDPASQELL 101
Query: 195 VATDHSKVQGTK 206
A + ++ T+
Sbjct: 102 AAVEKERLLKTR 113
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILKDAVFRYVI 194
+D C ICLE + +P +T C+H +HL CILEW +RS CP+C Q I LKD + ++
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQS-ISLKDPTSQELL 88
Query: 195 VATDHSK 201
A + +
Sbjct: 89 EAVEQER 95
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 92 SFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENP 150
+FE L+ + + K L+ K +++ N AS +D+C +CL+++ E
Sbjct: 147 TFEELS--SIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETV 204
Query: 151 KLITKCEHHFHLSCILEWNERSESCPICDQVL 182
+ + C H FHL CI W R SCP+C + L
Sbjct: 205 RSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 108 KTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCIL 166
K L+ K ++ N ASE D+C +CL+++ E + + C H FHL CI
Sbjct: 166 KGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCID 225
Query: 167 EWNERSESCPICDQ 180
W R SCP+C +
Sbjct: 226 NWLLRHGSCPMCRR 239
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 85 GETVSGGSFETLAMC-EVVEDADCKTQASSLIASPRKSEVSQLNVFAASEE------EDT 137
+ +GG + MC + C+ +A + R+S V +++ + +D
Sbjct: 561 AQNATGGGIRAIMMCIHAYFNIWCEARAGWSVFMKRRSAVHKISALPEATPAQLQAFDDV 620
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILKDA 188
C IC +E + IT+C H FH C+ +W + CP+C ++++ A
Sbjct: 621 CAICYQEMYSAK---ITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTDKA 668
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171
S I S +K E+ + + CPICL EY T E + + +CEH FH CI W +
Sbjct: 302 STIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKL 361
Query: 172 SESCPICDQVLIILKD 187
SCP+C L+D
Sbjct: 362 HSSCPVCRSNPSPLRD 377
>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana
GN=ATL21A PE=3 SV=1
Length = 372
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171
S+I S +K+E+ + + ++ CPICL EY + E + I +C+H FH CI W +
Sbjct: 295 SIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKI 354
Query: 172 SESCPIC 178
SCP+C
Sbjct: 355 HGSCPLC 361
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQVLIILKD 187
++CP+C Q + I D
Sbjct: 580 DTCPMCHQKVYIEDD 594
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQVLIILKD 187
++CP+C Q + I D
Sbjct: 580 DTCPMCHQKVYIEDD 594
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 134 EEDTCPICLEEYD-TENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILKDAVFRY 192
E CP+CL E++ E+ +L+ KC H FH+SCI W +CP+C + ++ RY
Sbjct: 173 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRY 232
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E +D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSHLQEIDDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQVLII 184
++CP+C Q + I
Sbjct: 580 DTCPMCHQKVYI 591
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 105 ADCKTQASSLIASP--RKSEVSQLNVFAASEEEDT----CPICLEEYD-TENPKLITKCE 157
AD T A+S++AS + + L VF S+E C +CL E++ +E +++ C+
Sbjct: 80 ADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQ 139
Query: 158 HHFHLSCILEWNERSESCPICDQVLIILKD------AVFRYVIVATDHSKV 202
H FH+ CI W +CP+C ++ L A R V++A D V
Sbjct: 140 HTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPV 190
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 127 NVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQVL 182
NV + E+ C +CL E+ DT+ +L+ C H FHL CI W + +CP+C + L
Sbjct: 196 NVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 125 QLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184
Q V A + + CPICL+ +D N + +C H F C+ EW++ CP+C Q
Sbjct: 91 QQTVPADASPDSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPF-- 146
Query: 185 LKDAVFRYVIVATD 198
D++F V D
Sbjct: 147 --DSIFHSVRAEDD 158
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 125 QLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184
Q V A + + CPICL+ +D N + +C H F C+ EW++ CP+C Q
Sbjct: 90 QQTVPADASPDSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPF-- 145
Query: 185 LKDAVFRYVIVATD 198
D++F V D
Sbjct: 146 --DSIFHSVRAEDD 157
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICLEEY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQVLI 183
+C Q ++
Sbjct: 280 VCKQKVV 286
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCP 176
K ++ +L V F +E D C ICLEEY+ + I C H +H C+ W + ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQVLI 183
+C Q ++
Sbjct: 280 VCKQKVV 286
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 128 VFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVL 182
V ++++ + CP+CL E++ E + C H FH +CIL W ++ SCP+C L
Sbjct: 78 VISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 138 CPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQVL 182
C ICL++ T E + + KC+H FHL C+ +W R SCPIC Q +
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAV 221
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILKD 187
C +CL ++ D E +L+ KC H FH+ CI +W E+ +CP+C + I D
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDD 174
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 120 KSEVSQLNVFAASEEEDT----CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESC 175
K +++ L ++E+ CP+C E+Y E C H FH SCI+ W E ++C
Sbjct: 207 KEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTC 266
Query: 176 PICDQVL 182
P+C + L
Sbjct: 267 PVCRKSL 273
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 125 QLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPIC-DQV 181
+ + S++ C +CL ++++ E +L+ KC H FH+ CI +W E+ +CP+C D+V
Sbjct: 110 RFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRV 168
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 119 RKSEVSQLNVFAASEEE------DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R+ V+++ S +E D C IC Y N +IT C H FH C+ +W
Sbjct: 512 RRDAVNKIKSLPVSTKEQLEQHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQ 568
Query: 173 ESCPIC 178
E+CP+C
Sbjct: 569 ETCPLC 574
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183
F ++ TC +C+ EY N C H +H+ CI W + +CPIC + ++
Sbjct: 561 FGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 615
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNER 171
SLI S + +++ F S + C +CL E+ + E+ +L+ KC H FH+ CI W +
Sbjct: 137 SLIKSITVYKYRKMDGFVESSD---CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKS 193
Query: 172 SESCPICDQVLIILKDAV 189
+CP+C + I+ AV
Sbjct: 194 HSNCPLC-RAFIVTSSAV 210
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQVLI 183
+C Q ++
Sbjct: 280 VCKQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQVLI 183
+C Q ++
Sbjct: 280 VCKQKVV 286
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQVLI 183
+C Q ++
Sbjct: 280 VCKQKVV 286
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVL 182
CP+C E+Y E C H FH SCI+ W E ++CP+C + L
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQVLI 183
+C Q ++
Sbjct: 280 VCKQKVV 286
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens
GN=PHRF1 PE=1 SV=3
Length = 1649
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183
F + ++ ++CPICL + + C H+F L CI+EW++ + SCP+ D+ L
Sbjct: 99 FNSDDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPV-DRTLF 152
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 124 SQLNVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQVL 182
S + +E CP+CL E+ D E +LI +C H FH CI W +CP+C L
Sbjct: 104 STVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANL 163
Query: 183 I 183
+
Sbjct: 164 V 164
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 132 SEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186
SE+ C ICL E+ + +++ +C H FH++CI W SCP C Q+L++ +
Sbjct: 105 SEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVAR 160
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 138 CPICLEEYDTENP-KLITKCEHHFHLSCILEWNERSESCPICDQVLI 183
CP+CL E++TE+ +L+ KC H FH+ CI W +CP+C L+
Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLL 172
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 130 AASEEEDT--CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQVL 182
AA+EE D+ C ICL ++ D E +++ C H FH+ CI +W SCP C ++L
Sbjct: 92 AAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRIL 147
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
SE C +C+ +Y T N C H FH+ CI W + +CPIC Q
Sbjct: 626 SELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQ 674
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184
C ICL ++ D E +++ KC H FH+ CI W SCP C Q L++
Sbjct: 114 CLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLL 161
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 105 ADCKTQASSLIASPRKS----EVSQLNVFAASEEEDTCPICLEEY-DTENPKLITKCEHH 159
A + QA L AS ++ + S + +E C +CL E+ D E +LI KC H
Sbjct: 107 ATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHV 166
Query: 160 FHLSCILEWNERSESCPICDQVLI 183
FH CI W +CP+C LI
Sbjct: 167 FHPGCIDAWLRSHTTCPLCRADLI 190
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 135 EDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
+ TC ICL EY + E +++ +C+H+FHL C+ W + + SCP+C
Sbjct: 135 DTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVC 179
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCPICDQ 180
+ +E D C ICL+EY+ + I C H +H C+ W + ++CPIC Q
Sbjct: 221 YQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQ 273
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
C ICL E+ D E +L+ KC+H FH CI W E +CP+C
Sbjct: 128 CAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVC 169
>sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2
SV=1
Length = 212
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 134 EEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
E TC ICL EY + E +++ +C+H+FH+ C+ W + + SCP+C
Sbjct: 132 RETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVC 177
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
+ D C IC Y N +IT C H FH C+ +W E+CP+C
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 138 CPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPIC 178
CPICL EY + E + + +C+H FH+ CI EW + SCP+C
Sbjct: 253 CPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVC 294
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 121 SEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICD 179
+ + ++ + S E +C +CL+++ E + + C H FHL CI +W R SCP+C
Sbjct: 159 NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
Query: 180 QVL 182
+ L
Sbjct: 219 RHL 221
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVL 182
CP+C E+Y C H FH SCI+ W E+ +SCP+C + L
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPI 177
K ++ L+ F ++ TC +C+ EY N C H +H+ CI W + +CPI
Sbjct: 548 KEQIDNLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPI 607
Query: 178 CDQVLIILKDAVFRYVIV 195
C + +++ A R IV
Sbjct: 608 CRRAVLV---ASNRESIV 622
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCPICDQ 180
+ +E D C ICL+EY+ + + C H +H C+ W + ++CPIC Q
Sbjct: 221 YQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQ 273
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILKDAVFRYVIVA 196
C ICL E + +L+ KC H FH+ CI W + +CPIC ++ + A + V
Sbjct: 127 CSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQV 186
Query: 197 TDHSKVQGT 205
D+++ GT
Sbjct: 187 PDNAENAGT 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,473,248
Number of Sequences: 539616
Number of extensions: 2956461
Number of successful extensions: 7961
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 7483
Number of HSP's gapped (non-prelim): 728
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)