Query 028554
Match_columns 207
No_of_seqs 247 out of 1731
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 22:19:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.6 2.6E-16 8.8E-21 99.9 4.4 51 133-183 3-54 (55)
2 1x4j_A Ring finger protein 38; 99.6 1.8E-16 6.3E-21 107.1 3.8 55 131-185 19-73 (75)
3 2kiz_A E3 ubiquitin-protein li 99.6 7.3E-16 2.5E-20 102.3 5.3 54 132-185 11-64 (69)
4 2l0b_A E3 ubiquitin-protein li 99.6 3.8E-16 1.3E-20 109.6 3.2 53 132-184 37-89 (91)
5 2ep4_A Ring finger protein 24; 99.6 1.1E-15 3.8E-20 102.8 4.5 52 133-184 13-64 (74)
6 2ect_A Ring finger protein 126 99.6 1E-15 3.5E-20 104.0 4.2 55 132-186 12-66 (78)
7 3dpl_R Ring-box protein 1; ubi 99.6 1.9E-15 6.5E-20 109.0 4.8 67 118-184 17-101 (106)
8 2ecl_A Ring-box protein 2; RNF 99.6 2.6E-15 8.7E-20 103.2 5.0 53 133-185 13-77 (81)
9 2djb_A Polycomb group ring fin 99.5 4.4E-15 1.5E-19 99.5 4.9 53 132-186 12-64 (72)
10 2ecm_A Ring finger and CHY zin 99.5 3.7E-15 1.3E-19 94.4 4.1 51 133-183 3-54 (55)
11 2csy_A Zinc finger protein 183 99.5 1.1E-14 3.6E-19 99.8 4.9 49 132-183 12-60 (81)
12 1chc_A Equine herpes virus-1 r 99.5 8.6E-15 2.9E-19 96.8 3.8 50 133-184 3-52 (68)
13 3lrq_A E3 ubiquitin-protein li 99.5 5.6E-15 1.9E-19 105.3 3.0 60 133-194 20-80 (100)
14 3ng2_A RNF4, snurf, ring finge 99.5 7.1E-15 2.4E-19 97.9 3.0 54 133-186 8-65 (71)
15 1v87_A Deltex protein 2; ring- 99.5 1.6E-14 5.6E-19 105.0 4.8 53 133-185 23-95 (114)
16 2ea6_A Ring finger protein 4; 99.5 1.3E-14 4.6E-19 95.8 3.8 52 132-183 12-67 (69)
17 2y43_A E3 ubiquitin-protein li 99.5 9.6E-15 3.3E-19 103.7 3.0 53 133-187 20-72 (99)
18 2d8t_A Dactylidin, ring finger 99.5 1.1E-14 3.6E-19 97.4 3.0 50 132-184 12-61 (71)
19 4a0k_B E3 ubiquitin-protein li 99.5 4.1E-15 1.4E-19 108.9 0.3 67 118-184 28-112 (117)
20 2d8s_A Cellular modulator of i 99.5 2.4E-14 8.3E-19 98.0 3.7 56 130-186 10-72 (80)
21 2xeu_A Ring finger protein 4; 99.5 1.9E-14 6.3E-19 93.7 2.8 52 134-185 2-57 (64)
22 2ecn_A Ring finger protein 141 99.5 2.1E-14 7.2E-19 95.4 2.8 51 132-186 12-62 (70)
23 2ysl_A Tripartite motif-contai 99.5 6.4E-14 2.2E-18 93.7 5.2 52 132-186 17-71 (73)
24 2yur_A Retinoblastoma-binding 99.4 4.9E-14 1.7E-18 94.9 3.9 52 132-186 12-66 (74)
25 2ct2_A Tripartite motif protei 99.4 3.2E-14 1.1E-18 98.5 2.7 54 132-185 12-69 (88)
26 1t1h_A Gspef-atpub14, armadill 99.4 7E-14 2.4E-18 94.8 4.2 52 132-186 5-57 (78)
27 4ayc_A E3 ubiquitin-protein li 99.4 4.9E-14 1.7E-18 106.1 3.7 50 133-185 51-100 (138)
28 2ecy_A TNF receptor-associated 99.4 7.2E-14 2.5E-18 91.9 3.9 50 133-185 13-63 (66)
29 2ckl_A Polycomb group ring fin 99.4 1.3E-13 4.4E-18 99.4 4.6 51 133-185 13-63 (108)
30 2ysj_A Tripartite motif-contai 99.4 4.2E-13 1.4E-17 87.3 5.6 45 131-178 16-63 (63)
31 3ztg_A E3 ubiquitin-protein li 99.4 2.5E-13 8.5E-18 95.0 4.8 49 131-182 9-60 (92)
32 2ecw_A Tripartite motif-contai 99.4 4.2E-13 1.4E-17 91.9 5.0 52 132-186 16-73 (85)
33 2egp_A Tripartite motif-contai 99.4 6.6E-14 2.2E-18 95.0 0.9 52 132-186 9-67 (79)
34 3fl2_A E3 ubiquitin-protein li 99.4 2.6E-13 9E-18 100.1 3.5 49 133-184 50-99 (124)
35 2ecv_A Tripartite motif-contai 99.3 5.8E-13 2E-17 91.2 4.0 52 132-186 16-73 (85)
36 1g25_A CDK-activating kinase a 99.3 8E-13 2.7E-17 86.5 4.5 53 134-186 2-57 (65)
37 2ckl_B Ubiquitin ligase protei 99.3 6E-13 2E-17 102.9 3.4 49 133-183 52-101 (165)
38 2ecj_A Tripartite motif-contai 99.3 1.1E-12 3.8E-17 83.6 4.1 44 132-178 12-58 (58)
39 2ct0_A Non-SMC element 1 homol 99.3 1.8E-12 6.1E-17 87.2 4.6 53 133-187 13-67 (74)
40 1z6u_A NP95-like ring finger p 99.3 1.1E-12 3.8E-17 100.1 3.6 50 133-185 76-126 (150)
41 3hct_A TNF receptor-associated 99.3 1.3E-12 4.4E-17 95.7 3.6 52 132-186 15-67 (118)
42 4ap4_A E3 ubiquitin ligase RNF 99.3 1.1E-12 3.6E-17 97.2 3.2 54 133-186 5-62 (133)
43 2kr4_A Ubiquitin conjugation f 99.3 2.8E-12 9.7E-17 88.6 4.8 51 133-186 12-62 (85)
44 2kre_A Ubiquitin conjugation f 99.3 4.5E-12 1.5E-16 90.3 5.0 52 132-186 26-77 (100)
45 1jm7_B BARD1, BRCA1-associated 99.3 1.1E-12 3.8E-17 95.9 1.7 52 133-188 20-71 (117)
46 1jm7_A BRCA1, breast cancer ty 99.3 8.3E-13 2.8E-17 95.4 1.0 50 134-186 20-72 (112)
47 1wgm_A Ubiquitin conjugation f 99.2 6.8E-12 2.3E-16 89.0 5.4 51 133-186 20-71 (98)
48 3l11_A E3 ubiquitin-protein li 99.2 9.7E-13 3.3E-17 95.8 0.9 49 133-184 13-62 (115)
49 4ap4_A E3 ubiquitin ligase RNF 99.2 5E-12 1.7E-16 93.5 4.3 56 131-186 68-127 (133)
50 1bor_A Transcription factor PM 99.2 1.3E-12 4.4E-17 83.3 0.3 50 132-187 3-52 (56)
51 1rmd_A RAG1; V(D)J recombinati 99.2 3.9E-12 1.3E-16 92.7 2.8 51 133-186 21-72 (116)
52 1e4u_A Transcriptional repress 99.2 1.1E-11 3.7E-16 84.3 4.6 54 132-186 8-64 (78)
53 3knv_A TNF receptor-associated 99.2 6.9E-12 2.3E-16 94.8 2.9 49 132-183 28-77 (141)
54 2vje_A E3 ubiquitin-protein li 99.1 2.1E-11 7E-16 79.8 3.0 49 133-183 6-56 (64)
55 2yu4_A E3 SUMO-protein ligase 99.1 5.5E-11 1.9E-15 83.6 4.3 51 133-185 5-64 (94)
56 2vje_B MDM4 protein; proto-onc 99.1 4.6E-11 1.6E-15 77.9 2.9 49 133-183 5-55 (63)
57 4ic3_A E3 ubiquitin-protein li 99.1 2.5E-11 8.6E-16 81.6 1.6 45 133-184 22-67 (74)
58 3hcs_A TNF receptor-associated 99.1 6.1E-11 2.1E-15 91.9 3.6 53 131-186 14-67 (170)
59 2y1n_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 101.2 4.9 49 134-185 331-380 (389)
60 2c2l_A CHIP, carboxy terminus 99.0 1.8E-10 6E-15 95.3 4.3 52 132-186 205-257 (281)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.9 5.1E-10 1.7E-14 72.2 3.7 50 132-184 3-59 (60)
62 3htk_C E3 SUMO-protein ligase 98.9 4.8E-10 1.6E-14 92.1 4.4 55 132-188 178-236 (267)
63 2f42_A STIP1 homology and U-bo 98.9 8.3E-10 2.8E-14 86.3 4.6 53 132-187 103-156 (179)
64 2ecg_A Baculoviral IAP repeat- 98.9 3.1E-10 1.1E-14 76.3 1.7 44 134-184 24-68 (75)
65 3k1l_B Fancl; UBC, ring, RWD, 98.9 5.1E-10 1.7E-14 95.0 2.5 55 132-186 305-375 (381)
66 1wim_A KIAA0161 protein; ring 98.8 1E-09 3.5E-14 76.9 2.7 49 133-181 3-61 (94)
67 2yho_A E3 ubiquitin-protein li 98.8 8.8E-10 3E-14 75.0 1.1 44 134-184 17-61 (79)
68 2ea5_A Cell growth regulator w 98.8 3.5E-09 1.2E-13 69.9 3.8 45 133-184 13-58 (68)
69 2bay_A PRE-mRNA splicing facto 98.8 3.6E-09 1.2E-13 68.4 2.8 49 136-186 4-52 (61)
70 3t6p_A Baculoviral IAP repeat- 98.6 6.7E-09 2.3E-13 89.1 1.2 45 133-184 293-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 3.6E-07 1.2E-11 64.0 3.5 46 137-184 3-49 (101)
72 3nw0_A Non-structural maintena 98.0 2.6E-06 9E-11 69.4 4.0 55 133-189 178-234 (238)
73 2ko5_A Ring finger protein Z; 96.6 0.00065 2.2E-08 46.7 1.5 47 134-185 27-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.0018 6.2E-08 45.0 2.4 34 134-169 2-38 (101)
75 2lri_C Autoimmune regulator; Z 93.9 0.048 1.6E-06 35.1 3.3 47 133-182 10-60 (66)
76 1wil_A KIAA1045 protein; ring 92.1 0.17 5.7E-06 34.0 3.9 35 133-168 13-47 (89)
77 2lbm_A Transcriptional regulat 92.1 0.3 1E-05 36.2 5.6 49 132-183 60-119 (142)
78 2k16_A Transcription initiatio 92.0 0.045 1.5E-06 35.9 1.0 51 133-183 16-70 (75)
79 3m62_A Ubiquitin conjugation f 91.8 0.21 7E-06 47.9 5.5 52 131-185 887-939 (968)
80 2ysm_A Myeloid/lymphoid or mix 90.9 0.086 2.9E-06 37.2 1.6 39 132-170 4-42 (111)
81 1we9_A PHD finger family prote 90.9 0.05 1.7E-06 34.5 0.3 50 132-181 3-58 (64)
82 3i2d_A E3 SUMO-protein ligase 90.8 0.24 8.2E-06 42.4 4.5 62 134-197 248-313 (371)
83 4fo9_A E3 SUMO-protein ligase 90.5 0.27 9.2E-06 42.0 4.5 62 134-197 214-279 (360)
84 1f62_A Transcription factor WS 89.6 0.25 8.6E-06 29.6 2.7 44 137-180 2-49 (51)
85 2l5u_A Chromodomain-helicase-D 89.5 0.21 7.1E-06 31.4 2.3 46 132-180 8-57 (61)
86 1mm2_A MI2-beta; PHD, zinc fin 88.4 0.12 4E-06 32.6 0.6 47 133-182 7-57 (61)
87 3o36_A Transcription intermedi 87.5 0.15 5.1E-06 39.2 0.8 48 133-183 2-53 (184)
88 2puy_A PHD finger protein 21A; 87.4 0.082 2.8E-06 33.1 -0.6 48 133-183 3-54 (60)
89 2yql_A PHD finger protein 21A; 85.1 0.14 4.8E-06 31.5 -0.4 46 132-180 6-55 (56)
90 3u5n_A E3 ubiquitin-protein li 84.2 0.18 6.1E-06 39.6 -0.3 48 132-182 4-55 (207)
91 3lqh_A Histone-lysine N-methyl 84.0 0.35 1.2E-05 37.4 1.3 49 135-183 2-65 (183)
92 2vpb_A Hpygo1, pygopus homolog 83.7 0.95 3.3E-05 28.7 3.1 34 132-165 5-40 (65)
93 1xwh_A Autoimmune regulator; P 83.7 0.2 7E-06 31.9 -0.1 46 133-181 6-55 (66)
94 2l43_A N-teminal domain from h 83.2 0.29 9.8E-06 33.2 0.5 53 131-183 21-77 (88)
95 2ku3_A Bromodomain-containing 82.4 0.54 1.9E-05 30.5 1.6 50 131-180 12-65 (71)
96 2e6r_A Jumonji/ARID domain-con 80.9 0.16 5.4E-06 34.8 -1.5 49 133-181 14-66 (92)
97 2lv9_A Histone-lysine N-methyl 79.5 0.57 1.9E-05 32.3 1.0 47 134-181 27-76 (98)
98 3v43_A Histone acetyltransfera 79.3 3.5 0.00012 28.8 5.2 34 133-166 3-42 (112)
99 1fp0_A KAP-1 corepressor; PHD 78.8 0.83 2.8E-05 31.0 1.6 47 132-181 22-72 (88)
100 1wep_A PHF8; structural genomi 78.5 1.3 4.3E-05 29.1 2.4 49 133-182 10-64 (79)
101 2kgg_A Histone demethylase jar 78.0 1.8 6.2E-05 25.9 2.8 43 137-179 4-52 (52)
102 2cs3_A Protein C14ORF4, MY039 75.9 0.89 3E-05 30.2 1.0 39 133-172 13-53 (93)
103 1z60_A TFIIH basal transcripti 75.9 1.3 4.3E-05 27.7 1.7 43 136-178 16-58 (59)
104 3o70_A PHD finger protein 13; 75.4 0.65 2.2E-05 29.8 0.3 48 132-180 16-66 (68)
105 1wev_A Riken cDNA 1110020M19; 74.2 0.38 1.3E-05 32.5 -1.2 50 133-182 14-73 (88)
106 1weu_A Inhibitor of growth fam 73.0 1.7 5.8E-05 29.6 1.9 46 133-182 34-86 (91)
107 1wem_A Death associated transc 72.5 1.6 5.5E-05 28.3 1.7 46 135-181 16-70 (76)
108 2e6s_A E3 ubiquitin-protein li 72.4 0.78 2.7E-05 30.2 0.1 45 136-180 27-76 (77)
109 2yt5_A Metal-response element- 71.8 1.4 4.7E-05 27.7 1.2 51 132-182 3-62 (66)
110 1wew_A DNA-binding family prot 71.1 1.3 4.5E-05 29.0 1.0 48 134-182 15-73 (78)
111 2ro1_A Transcription intermedi 70.9 0.92 3.2E-05 35.0 0.2 45 135-182 2-50 (189)
112 3v43_A Histone acetyltransfera 70.5 1.4 4.9E-05 30.9 1.1 44 137-180 63-111 (112)
113 4gne_A Histone-lysine N-methyl 70.5 2.2 7.5E-05 29.9 2.1 44 131-180 11-61 (107)
114 1wen_A Inhibitor of growth fam 70.5 2 6.9E-05 27.7 1.7 46 133-182 14-66 (71)
115 3asl_A E3 ubiquitin-protein li 68.8 0.76 2.6E-05 29.6 -0.6 44 137-180 20-68 (70)
116 2xb1_A Pygopus homolog 2, B-ce 66.5 3.2 0.00011 28.8 2.2 49 135-183 3-63 (105)
117 3ql9_A Transcriptional regulat 66.2 5.6 0.00019 28.8 3.5 47 132-181 54-111 (129)
118 3ask_A E3 ubiquitin-protein li 64.9 2 6.8E-05 34.2 1.0 46 135-180 174-224 (226)
119 3shb_A E3 ubiquitin-protein li 62.9 1 3.5E-05 29.6 -0.9 44 137-180 28-76 (77)
120 3mjh_B Early endosome antigen 62.4 1.6 5.5E-05 24.1 0.0 12 134-145 4-15 (34)
121 2ri7_A Nucleosome-remodeling f 61.8 1.6 5.6E-05 32.8 -0.0 48 133-181 6-59 (174)
122 1weo_A Cellulose synthase, cat 61.5 15 0.0005 24.8 4.6 50 134-183 15-69 (93)
123 1wyh_A SLIM 2, skeletal muscle 60.4 4.2 0.00015 25.4 1.8 41 135-184 5-45 (72)
124 2o35_A Hypothetical protein DU 57.6 4.1 0.00014 28.0 1.4 13 159-171 42-54 (105)
125 3fyb_A Protein of unknown func 57.2 4.2 0.00014 28.0 1.4 13 159-171 41-53 (104)
126 2ysm_A Myeloid/lymphoid or mix 56.0 1.9 6.3E-05 30.1 -0.6 44 137-180 56-103 (111)
127 2d8v_A Zinc finger FYVE domain 56.0 8.1 0.00028 24.5 2.5 34 131-168 4-38 (67)
128 1x61_A Thyroid receptor intera 55.9 6.6 0.00022 24.5 2.2 40 135-183 5-44 (72)
129 1wee_A PHD finger family prote 55.9 1.4 4.7E-05 28.4 -1.2 48 133-181 14-66 (72)
130 1x4l_A Skeletal muscle LIM-pro 55.6 7.3 0.00025 24.3 2.3 40 135-183 5-46 (72)
131 2dar_A PDZ and LIM domain prot 55.6 7.4 0.00025 25.6 2.5 40 133-183 23-62 (90)
132 2vnf_A ING 4, P29ING4, inhibit 55.0 1.8 6.3E-05 26.8 -0.7 40 134-180 9-58 (60)
133 2rsd_A E3 SUMO-protein ligase 54.9 1.1 3.7E-05 28.6 -1.8 45 134-180 9-64 (68)
134 2dj7_A Actin-binding LIM prote 54.9 7.1 0.00024 25.2 2.2 40 134-183 14-53 (80)
135 1x4k_A Skeletal muscle LIM-pro 54.1 4.6 0.00016 25.2 1.2 40 136-184 6-45 (72)
136 1y02_A CARP2, FYVE-ring finger 53.6 1.7 5.9E-05 31.1 -1.1 49 133-181 17-66 (120)
137 1x63_A Skeletal muscle LIM-pro 53.5 6.1 0.00021 25.4 1.7 41 135-184 15-55 (82)
138 1x62_A C-terminal LIM domain p 52.9 7.7 0.00026 24.8 2.1 39 134-183 14-52 (79)
139 3c6w_A P28ING5, inhibitor of g 52.4 2.2 7.6E-05 26.4 -0.6 43 134-180 8-57 (59)
140 1iml_A CRIP, cysteine rich int 52.1 3 0.0001 26.6 -0.0 43 134-180 26-69 (76)
141 3a1b_A DNA (cytosine-5)-methyl 51.8 13 0.00046 27.7 3.5 47 130-180 74-133 (159)
142 1wfk_A Zinc finger, FYVE domai 50.6 9 0.00031 25.6 2.2 37 132-168 6-43 (88)
143 2zet_C Melanophilin; complex, 50.0 9 0.00031 28.5 2.3 49 133-182 66-118 (153)
144 2cu8_A Cysteine-rich protein 2 49.9 4.2 0.00014 25.8 0.4 40 134-183 8-47 (76)
145 2l4z_A DNA endonuclease RBBP8, 49.7 10 0.00035 26.8 2.5 40 134-183 60-99 (123)
146 1g47_A Pinch protein; LIM doma 48.9 5.9 0.0002 25.0 1.0 42 134-184 10-51 (77)
147 1x68_A FHL5 protein; four-and- 48.7 6.7 0.00023 24.9 1.3 40 135-183 5-46 (76)
148 2kwj_A Zinc finger protein DPF 48.3 1.7 5.9E-05 30.6 -1.8 46 137-182 60-109 (114)
149 2co8_A NEDD9 interacting prote 47.9 7.6 0.00026 25.1 1.5 41 134-184 14-54 (82)
150 3o7a_A PHD finger protein 13 v 47.9 3.1 0.0001 24.9 -0.5 41 140-180 8-51 (52)
151 1zbd_B Rabphilin-3A; G protein 47.4 7.9 0.00027 28.1 1.6 50 133-182 53-108 (134)
152 1z2q_A LM5-1; membrane protein 47.3 12 0.00042 24.5 2.5 36 133-168 19-55 (84)
153 3t7l_A Zinc finger FYVE domain 47.0 11 0.00037 25.2 2.2 37 133-169 18-55 (90)
154 1wd2_A Ariadne-1 protein homol 46.4 3.2 0.00011 25.8 -0.5 37 135-171 6-47 (60)
155 2l3k_A Rhombotin-2, linker, LI 46.0 8.2 0.00028 27.1 1.5 9 137-145 10-18 (123)
156 3f6q_B LIM and senescent cell 45.7 7.1 0.00024 24.1 1.0 42 134-184 10-51 (72)
157 2jmi_A Protein YNG1, ING1 homo 44.2 4.1 0.00014 27.6 -0.3 44 133-180 24-75 (90)
158 2d8x_A Protein pinch; LIM doma 43.8 8.7 0.0003 23.8 1.3 39 135-184 5-43 (70)
159 1x4u_A Zinc finger, FYVE domai 43.7 13 0.00046 24.3 2.2 35 133-167 12-47 (84)
160 2yw8_A RUN and FYVE domain-con 43.4 13 0.00043 24.3 2.1 36 133-168 17-53 (82)
161 1m3v_A FLIN4, fusion of the LI 43.2 17 0.0006 25.3 2.9 53 133-185 30-82 (122)
162 1x64_A Alpha-actinin-2 associa 43.2 12 0.00042 24.4 2.0 40 134-184 24-63 (89)
163 1joc_A EEA1, early endosomal a 43.0 13 0.00044 26.5 2.2 36 133-168 67-103 (125)
164 2pv0_B DNA (cytosine-5)-methyl 42.8 22 0.00076 30.4 3.9 48 131-181 89-148 (386)
165 2d8y_A Eplin protein; LIM doma 42.3 10 0.00034 24.9 1.4 39 135-183 15-53 (91)
166 1wig_A KIAA1808 protein; LIM d 42.1 11 0.00037 23.7 1.5 37 136-183 6-42 (73)
167 2d8z_A Four and A half LIM dom 41.0 15 0.0005 22.6 2.0 37 136-183 6-42 (70)
168 1vfy_A Phosphatidylinositol-3- 40.5 16 0.00054 23.3 2.1 32 136-167 12-44 (73)
169 1dvp_A HRS, hepatocyte growth 40.0 14 0.00047 28.8 2.1 35 134-168 160-195 (220)
170 2ehe_A Four and A half LIM dom 39.6 12 0.00041 23.9 1.5 39 136-183 16-54 (82)
171 2ct7_A Ring finger protein 31; 38.9 4.4 0.00015 26.9 -0.9 41 138-178 28-73 (86)
172 2cor_A Pinch protein; LIM doma 38.9 15 0.00053 23.4 1.9 39 134-183 14-52 (79)
173 1a7i_A QCRP2 (LIM1); LIM domai 38.4 4.8 0.00016 25.9 -0.7 39 135-183 7-45 (81)
174 2cur_A Skeletal muscle LIM-pro 38.1 13 0.00044 22.8 1.4 38 135-183 5-42 (69)
175 1nyp_A Pinch protein; LIM doma 37.9 9.9 0.00034 23.2 0.8 38 135-183 5-42 (66)
176 2jne_A Hypothetical protein YF 37.6 11 0.00038 25.8 1.0 43 134-184 31-73 (101)
177 1m3v_A FLIN4, fusion of the LI 37.1 23 0.00078 24.6 2.7 39 135-183 5-43 (122)
178 2cuq_A Four and A half LIM dom 36.7 15 0.0005 23.3 1.5 37 136-183 16-52 (80)
179 2xjy_A Rhombotin-2; oncoprotei 36.7 28 0.00096 24.2 3.2 50 134-183 28-77 (131)
180 1x6a_A LIMK-2, LIM domain kina 36.5 13 0.00044 23.7 1.2 37 136-183 16-52 (81)
181 2egq_A FHL1 protein; LIM domai 36.4 11 0.00037 23.7 0.8 40 135-183 15-57 (77)
182 3vhs_A ATPase wrnip1; zinc fin 36.2 10 0.00034 19.3 0.5 12 174-185 8-19 (29)
183 1v6g_A Actin binding LIM prote 36.2 12 0.00041 23.9 1.0 37 136-183 16-52 (81)
184 1j2o_A FLIN2, fusion of rhombo 35.6 19 0.00064 24.8 2.0 38 133-171 28-66 (114)
185 2a20_A Regulating synaptic mem 35.6 4.1 0.00014 25.3 -1.2 48 133-180 7-59 (62)
186 3zyq_A Hepatocyte growth facto 34.4 16 0.00056 28.6 1.7 35 134-168 163-198 (226)
187 1zfo_A LAsp-1; LIM domain, zin 32.7 18 0.00062 18.9 1.2 27 136-164 4-30 (31)
188 2dlo_A Thyroid receptor-intera 32.0 13 0.00045 23.7 0.7 38 135-183 15-52 (81)
189 6rxn_A Rubredoxin; electron tr 31.8 10 0.00035 22.2 0.1 31 136-181 5-39 (46)
190 2g6q_A Inhibitor of growth pro 31.5 6.8 0.00023 24.4 -0.8 43 134-180 10-59 (62)
191 2jmo_A Parkin; IBR, E3 ligase, 31.4 3.4 0.00011 27.1 -2.4 20 155-176 55-74 (80)
192 3kqi_A GRC5, PHD finger protei 31.4 13 0.00046 23.7 0.6 45 137-181 11-61 (75)
193 2cup_A Skeletal muscle LIM-pro 29.2 22 0.00075 23.5 1.5 49 133-185 31-79 (101)
194 2xqn_T Testin, TESS; metal-bin 28.8 46 0.0016 22.9 3.2 47 134-184 29-75 (126)
195 3kv5_D JMJC domain-containing 28.6 13 0.00045 32.8 0.3 44 138-181 39-88 (488)
196 2iyb_E Testin, TESS, TES; LIM 27.0 15 0.0005 22.4 0.2 38 137-183 4-43 (65)
197 2jrp_A Putative cytoplasmic pr 26.7 4.4 0.00015 26.9 -2.4 40 136-183 3-42 (81)
198 2jtn_A LIM domain-binding prot 26.6 30 0.001 25.8 1.9 48 133-185 85-132 (182)
199 1x3h_A Leupaxin; paxillin fami 26.3 19 0.00065 22.7 0.7 38 136-184 16-53 (80)
200 1q2j_A MU-conotoxin SMIIIA; HE 26.2 26 0.00088 17.6 1.0 6 6-11 10-15 (26)
201 2rgt_A Fusion of LIM/homeobox 26.2 26 0.00088 25.8 1.5 47 133-184 31-77 (169)
202 2gmg_A Hypothetical protein PF 26.2 15 0.0005 25.6 0.1 27 152-183 69-95 (105)
203 3mpx_A FYVE, rhogef and PH dom 26.1 14 0.00048 31.5 0.0 37 133-169 373-410 (434)
204 2jvx_A NF-kappa-B essential mo 25.1 26 0.0009 18.2 0.9 11 173-183 4-14 (28)
205 1x4i_A Inhibitor of growth pro 24.7 29 0.001 21.9 1.3 47 134-182 5-56 (70)
206 1rut_X Flinc4, fusion protein 23.9 33 0.0011 25.7 1.7 53 132-185 29-82 (188)
207 2i5o_A DNA polymerase ETA; zin 21.9 59 0.002 18.1 2.1 15 174-188 11-25 (39)
208 2csz_A Synaptotagmin-like prot 20.1 86 0.003 20.3 2.9 33 132-164 22-56 (76)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.62 E-value=2.6e-16 Score=99.89 Aligned_cols=51 Identities=25% Similarity=0.774 Sum_probs=44.8
Q ss_pred CCCCcccccccccCCCCCeEEcC-CCCccCHHHHHHHhhcCCCccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
+++..|+||++.+..++....++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 56778999999997666666676 9999999999999999999999999874
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=107.08 Aligned_cols=55 Identities=24% Similarity=0.681 Sum_probs=48.2
Q ss_pred cCCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
..+++..|+||++.|...+.++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3456778999999997777778899999999999999999999999999987653
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=7.3e-16 Score=102.34 Aligned_cols=54 Identities=28% Similarity=0.655 Sum_probs=47.6
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
.+++..|+||++.|.....++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 456678999999997767778899999999999999999999999999988654
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.59 E-value=3.8e-16 Score=109.59 Aligned_cols=53 Identities=32% Similarity=0.754 Sum_probs=47.2
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
.+++..|+||++.|..++.+..++|+|.||..||..|++.+.+||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45677899999999777777889999999999999999999999999998754
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=102.84 Aligned_cols=52 Identities=29% Similarity=0.873 Sum_probs=46.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
+++..|+||++.|.....+.+++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4667899999999777777788999999999999999999999999998753
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=1e-15 Score=104.04 Aligned_cols=55 Identities=35% Similarity=0.775 Sum_probs=48.0
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
.+++..|+||++.|.....+.+++|+|.||..||.+|++.+.+||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 3567789999999976677778999999999999999999999999999886543
No 7
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.56 E-value=1.9e-15 Score=109.01 Aligned_cols=67 Identities=25% Similarity=0.496 Sum_probs=51.1
Q ss_pred Cccchhcccccc---ccCCCCCcccccccccCCC---------------CCeEEcCCCCccCHHHHHHHhhcCCCccccc
Q 028554 118 PRKSEVSQLNVF---AASEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPICD 179 (207)
Q Consensus 118 ~~~~~~~k~~~~---~~~ee~~~C~ICle~~~~~---------------~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr 179 (207)
.+++.+++.... ....+++.|+||++.|+.. .++++++|+|.||..||.+||..+.+||+||
T Consensus 17 ~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 96 (106)
T 3dpl_R 17 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96 (106)
T ss_dssp CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSC
T ss_pred cCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCC
Confidence 344455554433 3344678899999999532 2367799999999999999999999999999
Q ss_pred ccccc
Q 028554 180 QVLII 184 (207)
Q Consensus 180 ~~~~~ 184 (207)
+.+.+
T Consensus 97 ~~~~~ 101 (106)
T 3dpl_R 97 REWEF 101 (106)
T ss_dssp SBCCE
T ss_pred Cccee
Confidence 98654
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=103.15 Aligned_cols=53 Identities=32% Similarity=0.760 Sum_probs=42.4
Q ss_pred CCCCcccccccccCC-----------CC-CeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 133 EEEDTCPICLEEYDT-----------EN-PKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~-----------~~-~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
.+++.|+||++.|.. ++ .+.+++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 356678999888833 22 445556999999999999999999999999988654
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-15 Score=99.49 Aligned_cols=53 Identities=30% Similarity=0.505 Sum_probs=46.2
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
.++...|+||++.+ .+++.+++|||.||..||.+|++.+.+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 45677899999999 678666699999999999999999999999999886543
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.54 E-value=3.7e-15 Score=94.37 Aligned_cols=51 Identities=29% Similarity=0.637 Sum_probs=43.8
Q ss_pred CCCCcccccccccCC-CCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 133 ee~~~C~ICle~~~~-~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
.++..|+||++.+.. .+..++++|+|.||..||.+|++...+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456789999999933 445688999999999999999999999999999763
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=99.78 Aligned_cols=49 Identities=41% Similarity=0.727 Sum_probs=43.7
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
.++...|+||++.+ .++ ++++|||.||..||.+|++...+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF--QNP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC--CSE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchh--cCe-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 35667899999999 667 45999999999999999999999999999986
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.50 E-value=8.6e-15 Score=96.77 Aligned_cols=50 Identities=32% Similarity=0.798 Sum_probs=44.7
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
+++..|+||++.+ .++.+.++|||.||..||.+|++.+.+||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4567899999999 6777889999999999999999999999999998753
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.50 E-value=5.6e-15 Score=105.34 Aligned_cols=60 Identities=27% Similarity=0.580 Sum_probs=48.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC-CCcccccccccccchhhhhHHH
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQVLIILKDAVFRYVI 194 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~Cr~~~~~~~~~~~~~~~ 194 (207)
+++..|+||++.+ .+++..++|||.||..||.+|+..+ .+||+||+.+..++...++.+.
T Consensus 20 ~~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~ 80 (100)
T 3lrq_A 20 AEVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAE 80 (100)
T ss_dssp HHHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHH
T ss_pred CCCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHH
Confidence 4677899999999 6775559999999999999999888 6999999998765544333333
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=7.1e-15 Score=97.86 Aligned_cols=54 Identities=24% Similarity=0.643 Sum_probs=45.4
Q ss_pred CCCCcccccccccCC----CCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccc
Q 028554 133 EEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 133 ee~~~C~ICle~~~~----~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
+++..|+||++.+.. +...++++|||.||..||.+|++.+.+||+||+.+...+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 567789999999932 244478999999999999999999999999999886543
No 15
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=1.6e-14 Score=104.99 Aligned_cols=53 Identities=34% Similarity=0.716 Sum_probs=41.9
Q ss_pred CCCCcccccccccCCCC---------------CeEEcCCCCccCHHHHHHHh-----hcCCCccccccccccc
Q 028554 133 EEEDTCPICLEEYDTEN---------------PKLITKCEHHFHLSCILEWN-----ERSESCPICDQVLIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~---------------~~~~lpC~H~Fh~~CI~~Wl-----~~~~~CP~Cr~~~~~~ 185 (207)
..++.|+||++.|.... .+.+++|+|.||..||..|+ ..+.+||+||..+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34568999999994321 33479999999999999999 4567999999987544
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=95.82 Aligned_cols=52 Identities=25% Similarity=0.680 Sum_probs=43.9
Q ss_pred CCCCCcccccccccCC----CCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 132 SEEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~----~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
..+...|+||++.+.. ...+++++|||.||..||.+|++.+.+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3567789999999932 233477999999999999999999999999999874
No 17
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.48 E-value=9.6e-15 Score=103.74 Aligned_cols=53 Identities=23% Similarity=0.550 Sum_probs=45.7
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccch
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILKD 187 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~ 187 (207)
+++..|+||++.+ .+++.+++|||.||..||.+|+..+.+||+||+.+...+.
T Consensus 20 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 20 DDLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CCCCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhC
Confidence 4567899999999 6786655999999999999999999999999998876433
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-14 Score=97.36 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=43.7
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
..++..|+||++.+ .++ +.++|+|.||..||.+|+....+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBC--SSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCccc--CCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 35667899999999 666 558999999999999999999999999998754
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.47 E-value=4.1e-15 Score=108.87 Aligned_cols=67 Identities=25% Similarity=0.496 Sum_probs=9.2
Q ss_pred Cccchhcccccc---ccCCCCCcccccccccCCC---------------CCeEEcCCCCccCHHHHHHHhhcCCCccccc
Q 028554 118 PRKSEVSQLNVF---AASEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPICD 179 (207)
Q Consensus 118 ~~~~~~~k~~~~---~~~ee~~~C~ICle~~~~~---------------~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr 179 (207)
.+++++++.... ....+++.|+||++.|+.. ..++.++|+|.||..||.+||+.+.+||+||
T Consensus 28 ~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr 107 (117)
T 4a0k_B 28 KKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107 (117)
T ss_dssp CCSEEEEEEEEEEEEEECCCC-----------------------------------------------------------
T ss_pred CCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCC
Confidence 345555555444 3344677899999999431 1334579999999999999999999999999
Q ss_pred ccccc
Q 028554 180 QVLII 184 (207)
Q Consensus 180 ~~~~~ 184 (207)
+.+.+
T Consensus 108 ~~~~~ 112 (117)
T 4a0k_B 108 REWEF 112 (117)
T ss_dssp -----
T ss_pred Ceeee
Confidence 98643
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.4e-14 Score=98.04 Aligned_cols=56 Identities=34% Similarity=0.780 Sum_probs=46.6
Q ss_pred ccCCCCCcccccccccCCCCCeEEcCCC-----CccCHHHHHHHhhcCC--Ccccccccccccc
Q 028554 130 AASEEEDTCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERSE--SCPICDQVLIILK 186 (207)
Q Consensus 130 ~~~ee~~~C~ICle~~~~~~~~~~lpC~-----H~Fh~~CI~~Wl~~~~--~CP~Cr~~~~~~~ 186 (207)
....+++.|.||+++|+.++++ ++||. |.||..||.+|+..+. +||+||+.+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3445677899999999877774 69996 9999999999998764 9999999887543
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.46 E-value=1.9e-14 Score=93.73 Aligned_cols=52 Identities=25% Similarity=0.642 Sum_probs=43.8
Q ss_pred CCCcccccccccCC----CCCeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 134 EEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 134 e~~~C~ICle~~~~----~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
++..|+||++.+.. ......++|||.||..||.+|++.+.+||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 45689999999932 23447799999999999999999999999999988654
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.1e-14 Score=95.45 Aligned_cols=51 Identities=33% Similarity=0.837 Sum_probs=44.0
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
..+...|+||++.+ .+ ++++|+|.||..||.+|+..+.+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~--~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGR--AD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSC--CS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCc--cC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 35667899999999 33 67999999999999999999999999999886543
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.4e-14 Score=93.73 Aligned_cols=52 Identities=35% Similarity=0.757 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhh---cCCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~Cr~~~~~~~ 186 (207)
.+++..|+||++.+ .++ ++++|||.||..||.+|++ ....||+||+.+..++
T Consensus 17 ~~~~~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBC--SSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCccc--CCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 45677899999999 566 5579999999999999997 4559999999886543
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.44 E-value=4.9e-14 Score=94.90 Aligned_cols=52 Identities=23% Similarity=0.442 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCCCCeEEcC-CCCccCHHHHHHHhhcC--CCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERS--ESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~--~~CP~Cr~~~~~~~ 186 (207)
..++..|+||++.| .+++. ++ |||.||..||.+|++.+ .+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIM--TDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCC--TTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHH--hCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 45677899999999 77855 88 99999999999999866 69999999765443
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-14 Score=98.49 Aligned_cols=54 Identities=28% Similarity=0.640 Sum_probs=44.5
Q ss_pred CCCCCcccccccccCCCC-CeEEcCCCCccCHHHHHHHhhcC---CCccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWNERS---ESCPICDQVLIIL 185 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~-~~~~lpC~H~Fh~~CI~~Wl~~~---~~CP~Cr~~~~~~ 185 (207)
.++...|+||++.|...+ ..++++|||.||..||.+|++.+ .+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 356778999999994433 14678999999999999999876 6999999987654
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.43 E-value=7e-14 Score=94.85 Aligned_cols=52 Identities=27% Similarity=0.540 Sum_probs=44.7
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc-CCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~~~ 186 (207)
..++..|+||++.+ .+| ++++|||.||..||.+|++. +.+||+||+.+....
T Consensus 5 ~~~~~~C~IC~~~~--~~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELM--KDP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCC--SSE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccc--cCC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 35678899999999 777 45799999999999999987 779999999886543
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.43 E-value=4.9e-14 Score=106.08 Aligned_cols=50 Identities=36% Similarity=0.746 Sum_probs=44.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
+++..|+||++.| .++ ++++|||.||..||..|+..+.+||+||+.+...
T Consensus 51 ~~~~~C~iC~~~~--~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYF--IEA-VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBC--SSE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCccc--CCc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4567899999999 677 5689999999999999999999999999998644
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.2e-14 Score=91.88 Aligned_cols=50 Identities=28% Similarity=0.577 Sum_probs=42.7
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHh-hcCCCccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWN-ERSESCPICDQVLIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~Cr~~~~~~ 185 (207)
+++..|+||++.+ .+++. ++|||.||..||.+|+ ....+||+||+.+..+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVL--CSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEE--SSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHh--cCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 5677899999999 67744 8999999999999999 4566999999987654
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.41 E-value=1.3e-13 Score=99.43 Aligned_cols=51 Identities=29% Similarity=0.630 Sum_probs=45.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
+++..|+||++.+ .+++.+++|||.||..||..|+..+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 5677899999999 77866569999999999999999999999999988754
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.2e-13 Score=87.31 Aligned_cols=45 Identities=40% Similarity=0.894 Sum_probs=38.3
Q ss_pred cCCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhh---cCCCcccc
Q 028554 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPIC 178 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~C 178 (207)
..+++..|+||++.+ .+++ +++|||.||..||.+|++ ...+||+|
T Consensus 16 ~~~~~~~C~IC~~~~--~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDIL--QKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBC--SSCE-ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchh--CCeE-EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345778899999999 6774 479999999999999998 45599998
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.39 E-value=2.5e-13 Score=94.98 Aligned_cols=49 Identities=24% Similarity=0.483 Sum_probs=42.0
Q ss_pred cCCCCCcccccccccCCCCCeEEcC-CCCccCHHHHHHHhhcC--CCcccccccc
Q 028554 131 ASEEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERS--ESCPICDQVL 182 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~--~~CP~Cr~~~ 182 (207)
..+++..|+||++.| .+|+ +++ |||.||..||..|+..+ ..||+||+.+
T Consensus 9 ~~~~~~~C~IC~~~~--~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIM--TDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEEC--SSCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhh--cCce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345778899999999 6784 578 99999999999999754 4999999987
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=4.2e-13 Score=91.95 Aligned_cols=52 Identities=37% Similarity=0.709 Sum_probs=44.4
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc------CCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER------SESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~------~~~CP~Cr~~~~~~~ 186 (207)
.+++..|+||++.+ .+++ +++|+|.||..||..|+.. ...||+||+.+..++
T Consensus 16 ~~~~~~C~IC~~~~--~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELL--KEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCC--SSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhh--Ccce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 35677899999999 6774 5899999999999999987 669999999987543
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=6.6e-14 Score=95.02 Aligned_cols=52 Identities=37% Similarity=0.715 Sum_probs=44.3
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc-------CCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-------SESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-------~~~CP~Cr~~~~~~~ 186 (207)
.+++..|+||++.+ .+++ +++|||.||..||.+|++. ...||+||+.+...+
T Consensus 9 ~~~~~~C~IC~~~~--~~p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 9 VQEEVTCPICLELL--TEPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCEETTTTEEC--SSCC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cccCCCCcCCCccc--CCee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 35678899999999 6674 4899999999999999987 569999999987643
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.36 E-value=2.6e-13 Score=100.13 Aligned_cols=49 Identities=31% Similarity=0.485 Sum_probs=42.7
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCC-Ccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVLII 184 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~-~CP~Cr~~~~~ 184 (207)
+++..|+||++.+ .++ +.++|||.||..||..|+.... +||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELV--FRP-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBC--SSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHH--cCc-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4667899999999 677 5589999999999999998554 99999999876
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.8e-13 Score=91.25 Aligned_cols=52 Identities=37% Similarity=0.761 Sum_probs=44.2
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc------CCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER------SESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~------~~~CP~Cr~~~~~~~ 186 (207)
.++...|+||++.+ .++ ++++|||.||..||..|+.. ...||+||+.+...+
T Consensus 16 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELL--TQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCC--SSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCccc--CCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 35677899999999 667 44799999999999999987 779999999887543
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=8e-13 Score=86.54 Aligned_cols=53 Identities=25% Similarity=0.557 Sum_probs=40.9
Q ss_pred CCCccccccc-ccCC-CCCeEEcCCCCccCHHHHHHHhhc-CCCcccccccccccc
Q 028554 134 EEDTCPICLE-EYDT-ENPKLITKCEHHFHLSCILEWNER-SESCPICDQVLIILK 186 (207)
Q Consensus 134 e~~~C~ICle-~~~~-~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~~~ 186 (207)
++..|+||++ .+.. ....++++|||.||..||.+|+.. ...||+||+.+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 4567999999 7722 222356899999999999999754 468999999886543
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.32 E-value=6e-13 Score=102.91 Aligned_cols=49 Identities=33% Similarity=0.769 Sum_probs=43.2
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc-CCCccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQVLI 183 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~ 183 (207)
.+...|+||++.| .+++.+++|||.||..||.+|+.. ...||+||..+.
T Consensus 52 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4567899999999 678666699999999999999987 779999999885
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=83.61 Aligned_cols=44 Identities=41% Similarity=1.035 Sum_probs=37.0
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhh---cCCCcccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPIC 178 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~C 178 (207)
.++...|+||++.+ .++ ++++|||.||..||.+|+. ...+||+|
T Consensus 12 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYL--KEP-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBC--SSC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCccc--Ccc-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35677899999999 666 4589999999999999954 56699998
No 39
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=87.21 Aligned_cols=53 Identities=19% Similarity=0.460 Sum_probs=43.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC--CCcccccccccccch
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--ESCPICDQVLIILKD 187 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~--~~CP~Cr~~~~~~~~ 187 (207)
+..+.|+||.+.+.. ...-..|+|.||..||.+||+.+ .+||+||+.+.....
T Consensus 13 ~~i~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSS--SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHccc--CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 456789999999953 33445899999999999999887 799999999876543
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=100.12 Aligned_cols=50 Identities=28% Similarity=0.476 Sum_probs=43.6
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCC-Cccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVLIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~-~CP~Cr~~~~~~ 185 (207)
++...|+||++.| .++ ++++|||.||..||.+|+.... +||+||..+...
T Consensus 76 ~~~~~C~IC~~~~--~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELV--YQP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBC--SSE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhh--cCC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4567899999999 777 4489999999999999998765 899999998766
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.29 E-value=1.3e-12 Score=95.68 Aligned_cols=52 Identities=29% Similarity=0.670 Sum_probs=44.6
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCC-Ccccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~-~CP~Cr~~~~~~~ 186 (207)
.++...|+||++.+ .++ +.++|||.||..||.+|+.... +||+||+.+..+.
T Consensus 15 ~~~~~~C~IC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMAL--REA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhh--cCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 45677899999999 677 5589999999999999998766 9999999987643
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=1.1e-12 Score=97.15 Aligned_cols=54 Identities=24% Similarity=0.643 Sum_probs=45.1
Q ss_pred CCCCcccccccccCC----CCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccc
Q 028554 133 EEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 133 ee~~~C~ICle~~~~----~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
.++..|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 456789999999932 233477999999999999999999999999999886543
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.28 E-value=2.8e-12 Score=88.64 Aligned_cols=51 Identities=20% Similarity=0.103 Sum_probs=45.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
.++..|+||++.| .+| ++++|||.|+..||.+|+....+||+||+.+....
T Consensus 12 p~~~~CpI~~~~m--~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred chheECcccCchh--cCC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 4678899999999 888 55889999999999999998899999999887553
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.26 E-value=4.5e-12 Score=90.32 Aligned_cols=52 Identities=19% Similarity=0.097 Sum_probs=45.9
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
..++..|+||++.| .+| ++++|||.|+..||.+|+....+||+||+.+...+
T Consensus 26 ~p~~~~CpI~~~~m--~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLM--TDP-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBC--SSE-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred CcHhhCCcCccCcc--cCC-eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 35678999999999 889 55889999999999999998889999999987543
No 45
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=1.1e-12 Score=95.87 Aligned_cols=52 Identities=25% Similarity=0.519 Sum_probs=43.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccchh
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILKDA 188 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~~ 188 (207)
+++..|+||++.| .+++.+.+|||.||..||..|+. ..||+||..+...+..
T Consensus 20 ~~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 20 EKLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp HHTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred hhCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence 4677899999999 78865449999999999999998 7999999998655433
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=8.3e-13 Score=95.38 Aligned_cols=50 Identities=34% Similarity=0.751 Sum_probs=42.4
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCC---Ccccccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE---SCPICDQVLIILK 186 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~---~CP~Cr~~~~~~~ 186 (207)
+...|+||++.+ .+++. ++|||.||..||..|+..+. +||+||+.+....
T Consensus 20 ~~~~C~IC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELI--KEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCC--SSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhh--cCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 456799999999 67744 89999999999999998764 9999999887543
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.24 E-value=6.8e-12 Score=89.04 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=45.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCC-CccCHHHHHHHhhcCCCcccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCE-HHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~-H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
.++..|+||++.| .+| ++++|| |.|+..||.+|+....+||+||+.+...+
T Consensus 20 p~~~~CpI~~~~m--~dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBC--SSE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccc--cCC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 5678899999999 889 558999 99999999999998889999999987553
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.24 E-value=9.7e-13 Score=95.77 Aligned_cols=49 Identities=29% Similarity=0.613 Sum_probs=42.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc-CCCcccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQVLII 184 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~ 184 (207)
+++..|+||++.+ .++ +.++|||.||..||.+|+.. ..+||+||+.+..
T Consensus 13 ~~~~~C~iC~~~~--~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEP-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSC-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCccc--Cce-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4667899999999 677 45799999999999999976 6699999998864
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=5e-12 Score=93.48 Aligned_cols=56 Identities=23% Similarity=0.618 Sum_probs=46.6
Q ss_pred cCCCCCcccccccccCC----CCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccc
Q 028554 131 ASEEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~~----~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
..++...|+||++.+.. ....+.++|||.||..||.+|++.+.+||+||..+..++
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 34677889999999832 233477999999999999999999999999999886543
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=1.3e-12 Score=83.25 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=41.5
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccch
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILKD 187 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~~ 187 (207)
++++..|+||++.| .++ ++++|||.||..||..| ...||+||+.+.....
T Consensus 3 e~~~~~C~IC~~~~--~~p-~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 3 EFQFLRCQQCQAEA--KCP-KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp SCCCSSCSSSCSSC--BCC-SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred cccCCCceEeCCcc--CCe-EEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 35677899999999 667 55999999999999885 5589999999876544
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.21 E-value=3.9e-12 Score=92.69 Aligned_cols=51 Identities=27% Similarity=0.525 Sum_probs=43.7
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc-CCCcccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQVLIILK 186 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~Cr~~~~~~~ 186 (207)
.++..|+||++.+ .+++. ++|||.||..||.+|+.. ..+||+||+.+...+
T Consensus 21 ~~~~~C~IC~~~~--~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 21 VKSISCQICEHIL--ADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHTBCTTTCSBC--SSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCcHh--cCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 3567899999999 67744 899999999999999987 679999999987544
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.21 E-value=1.1e-11 Score=84.34 Aligned_cols=54 Identities=19% Similarity=0.436 Sum_probs=42.0
Q ss_pred CCCCCcccccccccCCCCCeEEcC--CCCccCHHHHHHHhh-cCCCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITK--CEHHFHLSCILEWNE-RSESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lp--C~H~Fh~~CI~~Wl~-~~~~CP~Cr~~~~~~~ 186 (207)
.+++..|+||++.++..+. ..++ |||.||..||.+|+. ....||+||+.+....
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3567789999998854444 3344 999999999999884 4569999999886543
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.18 E-value=6.9e-12 Score=94.76 Aligned_cols=49 Identities=20% Similarity=0.494 Sum_probs=42.6
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCC-Cccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVLI 183 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~-~CP~Cr~~~~ 183 (207)
.+++..|+||++.+ .++ +.++|||.||..||.+|+.... +||+||+.+.
T Consensus 28 l~~~~~C~IC~~~~--~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVL--RRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhh--cCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 35777899999999 777 5589999999999999998665 9999999764
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.13 E-value=2.1e-11 Score=79.79 Aligned_cols=49 Identities=24% Similarity=0.549 Sum_probs=41.3
Q ss_pred CCCCcccccccccCCCCCeE-EcCCCCc-cCHHHHHHHhhcCCCccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKL-ITKCEHH-FHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~-~lpC~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
+++..|.||++.. .+.+. .+||||. ||..|+.+|.+.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4566899999987 56643 2399999 899999999998899999999874
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=5.5e-11 Score=83.59 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=41.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC------CCccc--cccc-cccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS------ESCPI--CDQV-LIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~------~~CP~--Cr~~-~~~~ 185 (207)
.++..|+||++.| .+|+++..|||.|+..||.+|+... .+||+ |++. +...
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 5678899999999 8895533599999999999999764 49999 9865 5433
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.08 E-value=4.6e-11 Score=77.86 Aligned_cols=49 Identities=18% Similarity=0.482 Sum_probs=40.9
Q ss_pred CCCCcccccccccCCCCCeE-EcCCCCc-cCHHHHHHHhhcCCCccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKL-ITKCEHH-FHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~-~lpC~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
+....|.||++.. .+.++ .+||||. ||..|+.+|.+....||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4566899999987 55532 2499998 999999999988899999999874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.08 E-value=2.5e-11 Score=81.58 Aligned_cols=45 Identities=27% Similarity=0.667 Sum_probs=38.6
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCc-cCHHHHHHHhhcCCCcccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
+++..|+||++.+ .++ +.+||||. ||..|+..| ..||+||+.+..
T Consensus 22 ~~~~~C~iC~~~~--~~~-~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRN--IAI-VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSB--CCE-EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCC--CCE-EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3556899999998 666 56899999 999999999 799999998754
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.06 E-value=6.1e-11 Score=91.91 Aligned_cols=53 Identities=28% Similarity=0.637 Sum_probs=44.7
Q ss_pred cCCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCC-Ccccccccccccc
Q 028554 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQVLIILK 186 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~-~CP~Cr~~~~~~~ 186 (207)
..++...|+||++.+ .+|+ .++|||.||..||.+|+..+. +||+||..+..++
T Consensus 14 ~~~~~~~C~IC~~~~--~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 14 PLESKYECPICLMAL--REAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCCGGGBCTTTCSBC--SSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCChhh--cCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 345778899999999 7774 489999999999999997654 9999999887643
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.05 E-value=1.1e-10 Score=101.21 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=42.4
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhh-cCCCccccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQVLIIL 185 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~Cr~~~~~~ 185 (207)
....|+||++.+ .++ +.++|||.||..||..|+. ...+||+||+.+...
T Consensus 331 ~~~~C~ICle~~--~~p-v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAEND--KDV-KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSB--CCE-EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCC--CCe-EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 346899999998 566 6699999999999999998 788999999987643
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.00 E-value=1.8e-10 Score=95.31 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=44.2
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC-CCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~Cr~~~~~~~ 186 (207)
..+...|+||++.| .+| ++++|||.||..||.+|+... .+||+||.++...+
T Consensus 205 ~~~~~~c~i~~~~~--~dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REP-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBC--SSE-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCcccCCcCcCCHh--cCC-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 34678899999999 888 558999999999999999764 46999999987543
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.94 E-value=5.1e-10 Score=72.19 Aligned_cols=50 Identities=32% Similarity=0.639 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCCCCeEEcCCC--C---ccCHHHHHHHhhc--CCCcccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCE--H---HFHLSCILEWNER--SESCPICDQVLII 184 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~--H---~Fh~~CI~~Wl~~--~~~CP~Cr~~~~~ 184 (207)
.+++..|.||+++. +++ .++||. | .||..||.+|+.. +.+||+|+..+..
T Consensus 3 ~~~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 35677899999985 455 468976 4 8999999999965 5699999998754
No 62
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.94 E-value=4.8e-10 Score=92.09 Aligned_cols=55 Identities=33% Similarity=0.602 Sum_probs=46.9
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC--CCccc--ccccccccchh
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--ESCPI--CDQVLIILKDA 188 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~--~~CP~--Cr~~~~~~~~~ 188 (207)
...+..|+||++.| .+|++.+.|||.||..||..|++.. .+||+ ||+.+...+..
T Consensus 178 ~~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 178 GKIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp SBCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred CceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 46778999999999 9998777999999999999999764 48999 99988765443
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.91 E-value=8.3e-10 Score=86.30 Aligned_cols=53 Identities=19% Similarity=0.076 Sum_probs=44.9
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC-CCcccccccccccch
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQVLIILKD 187 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~Cr~~~~~~~~ 187 (207)
..+...|+||++.| .+| ++++|||.|+..||.+|+... .+||+||..+...+.
T Consensus 103 ip~~f~CPI~~elm--~DP-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 103 IPDYLCGKISFELM--REP-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CCGGGBCTTTCSBC--SSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CcHhhcccCccccC--CCC-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 45778999999999 788 557999999999999999764 479999998876543
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=3.1e-10 Score=76.29 Aligned_cols=44 Identities=27% Similarity=0.669 Sum_probs=36.6
Q ss_pred CCCcccccccccCCCCCeEEcCCCCc-cCHHHHHHHhhcCCCcccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
++..|+||++.+ .++ +++||||. ||..|+..+ ..||+||+.+..
T Consensus 24 ~~~~C~IC~~~~--~~~-~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRN--IAI-VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSC--CCB-CCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCC--CCE-EEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 456799999998 666 55999999 999999653 689999998754
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.88 E-value=5.1e-10 Score=94.98 Aligned_cols=55 Identities=27% Similarity=0.524 Sum_probs=42.0
Q ss_pred CCCCCcccccccccCCCCCe--E---EcCCCCccCHHHHHHHhhcC-----------CCcccccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPK--L---ITKCEHHFHLSCILEWNERS-----------ESCPICDQVLIILK 186 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~--~---~lpC~H~Fh~~CI~~Wl~~~-----------~~CP~Cr~~~~~~~ 186 (207)
++....|+||++.+.....+ . ..+|+|.||..||.+||+.. ++||.||++|...-
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 35667899999999542221 1 35899999999999999753 48999999987543
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=1e-09 Score=76.90 Aligned_cols=49 Identities=31% Similarity=0.664 Sum_probs=38.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC--------CCccc--cccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--------ESCPI--CDQV 181 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~--------~~CP~--Cr~~ 181 (207)
.+...|+||++.+.....+.+++|||.||..||..|++.+ -.||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3566899999999544444445899999999999998642 38999 9998
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.80 E-value=8.8e-10 Score=74.96 Aligned_cols=44 Identities=32% Similarity=0.619 Sum_probs=37.3
Q ss_pred CCCcccccccccCCCCCeEEcCCCCc-cCHHHHHHHhhcCCCcccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
++..|.||++.+ .++ +++||||. ||..|+..|. .||+||+.+..
T Consensus 17 ~~~~C~IC~~~~--~~~-v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEE--INS-TFCPCGHTVCCESCAAQLQ----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSB--CCE-EEETTCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred CCCEeEEeCccc--CcE-EEECCCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence 456799999988 555 66999999 9999998873 99999998754
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3.5e-09 Score=69.92 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=37.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCc-cCHHHHHHHhhcCCCcccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
++...|.||++.. .+. +++||||. ||..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~--~~~-v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNW-VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCC-EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC--CCE-EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 4567899999987 555 77999999 99999974 4699999998753
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.75 E-value=3.6e-09 Score=68.37 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=42.5
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIILK 186 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~~ 186 (207)
..|+|+++.+ .+|++..++||.|...||.+|++.+.+||+.++++..++
T Consensus 4 ~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 5799999999 788553399999999999999998889999999886543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.61 E-value=6.7e-09 Score=89.12 Aligned_cols=45 Identities=27% Similarity=0.686 Sum_probs=38.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCc-cCHHHHHHHhhcCCCcccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
+++..|+||++.+ .++ +.+||||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~--~~~-v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKE--VSV-VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSB--CCE-EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcC--Cce-EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4667899999999 666 55899999 999999998 689999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.31 E-value=3.6e-07 Score=63.96 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=38.3
Q ss_pred cccccccccCCCCCeEEcCCCCccCHHHHHHHhh-cCCCcccccccccc
Q 028554 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQVLII 184 (207)
Q Consensus 137 ~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~Cr~~~~~ 184 (207)
.|.+|--.+ ....+++||.|.||.+|+..|.+ ..++||+|+..+..
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 488887776 55668899999999999999985 46799999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.05 E-value=2.6e-06 Score=69.36 Aligned_cols=55 Identities=20% Similarity=0.464 Sum_probs=43.0
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCC--Ccccccccccccchhh
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPICDQVLIILKDAV 189 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~--~CP~Cr~~~~~~~~~~ 189 (207)
+.-..|.||.+.... .+.-..|+|.||..|+.+|++... .||.|+..+......+
T Consensus 178 ~~i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 178 DAVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp TTCCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCCC
T ss_pred CCCCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Confidence 346789999999943 334345999999999999997655 9999999887665443
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.61 E-value=0.00065 Score=46.71 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=37.7
Q ss_pred CCCcccccccccCCCCCeEEcCCC-CccCHHHHHHHhhcCCCccccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCE-HHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~-H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
.-..|-.|+-.. . .+..|. |.+|..|+...|.++..||+|.+++...
T Consensus 27 G~~nCKsCWf~~----k-~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFEN----K-GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCC----S-SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhcccc----C-CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 345699999754 2 335566 9999999999999999999999988654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.31 E-value=0.0018 Score=45.04 Aligned_cols=34 Identities=18% Similarity=0.437 Sum_probs=26.1
Q ss_pred CCCcccccccccCCCCCeEE--cCCCCccCHHHHHH-Hh
Q 028554 134 EEDTCPICLEEYDTENPKLI--TKCEHHFHLSCILE-WN 169 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~--lpC~H~Fh~~CI~~-Wl 169 (207)
++..|.||++.+ ..+.+. +.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~--~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDP--AQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSS--CCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCC--CCCceEECCcCChHHhHHHCHHHhc
Confidence 456899999865 233344 89999999999998 54
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.92 E-value=0.048 Score=35.08 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=34.0
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCC----Ccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQVL 182 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~----~CP~Cr~~~ 182 (207)
.....|.||.+. ++-+.--.|...||..|+...|.... .|+.|+...
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999854 44444456889999999988775432 899997653
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.14 E-value=0.17 Score=34.03 Aligned_cols=35 Identities=20% Similarity=0.512 Sum_probs=22.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHH
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW 168 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~W 168 (207)
..++.|.||- .++.+...----|+..||..|+.+.
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 4677899995 3322222122236799999999986
No 77
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=92.05 E-value=0.3 Score=36.20 Aligned_cols=49 Identities=24% Similarity=0.431 Sum_probs=34.3
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhh-----------cCCCccccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-----------RSESCPICDQVLI 183 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-----------~~~~CP~Cr~~~~ 183 (207)
...++.|.||.+- ++-+.--.|-..||..||.+-+. ..=.|++|+..-.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl 119 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL 119 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH
Confidence 4567789999875 34444446788999999996553 1228999986533
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.99 E-value=0.045 Score=35.90 Aligned_cols=51 Identities=20% Similarity=0.390 Sum_probs=34.2
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc----CCCccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQVLI 183 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~----~~~CP~Cr~~~~ 183 (207)
++...|.||........-+.--.|.-.||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 455679999887632233333467889999999654432 338999977654
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.75 E-value=0.21 Score=47.86 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=44.7
Q ss_pred cCCCCCcccccccccCCCCCeEEcCCC-CccCHHHHHHHhhcCCCccccccccccc
Q 028554 131 ASEEEDTCPICLEEYDTENPKLITKCE-HHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~~~~~~~~lpC~-H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
..-++..|+|-++.+ .+| ++++-| +.|-...|.+|+....+||+=|+++...
T Consensus 887 ~iP~~F~cPIs~~lM--~DP-VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 887 DVPDEFLDPLMYTIM--KDP-VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CSCGGGBCTTTCSBC--SSE-EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcHHhCCcchhhHH--hCC-eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 345678899999999 899 558987 6899999999999889999999988644
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.93 E-value=0.086 Score=37.21 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=28.9
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhh
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~ 170 (207)
..+++.|.||.+.-+..+-+.-..|...||..||..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 357788999988753333355568899999999987664
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.91 E-value=0.05 Score=34.52 Aligned_cols=50 Identities=26% Similarity=0.491 Sum_probs=33.7
Q ss_pred CCCCCcccccccccCCC-CCeEEcCCCCccCHHHHHHHhh-----cCCCccccccc
Q 028554 132 SEEEDTCPICLEEYDTE-NPKLITKCEHHFHLSCILEWNE-----RSESCPICDQV 181 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~-~~~~~lpC~H~Fh~~CI~~Wl~-----~~~~CP~Cr~~ 181 (207)
.+++..|+||...++.. .-+.--.|...||..|+.--.. ....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45777899999888432 2333346788999999854322 33489999653
No 82
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=90.79 E-value=0.24 Score=42.43 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=45.4
Q ss_pred CCCcccccccccCCCCCeEEcCCCCc--cCHHHHHHHhhcCC--CcccccccccccchhhhhHHHHHh
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHH--FHLSCILEWNERSE--SCPICDQVLIILKDAVFRYVIVAT 197 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~--Fh~~CI~~Wl~~~~--~CP~Cr~~~~~~~~~~~~~~~~~~ 197 (207)
-...|+|=+..+ ..|++-..|.|. |-..=+.....+.. .||+|.+.+...+..+..++....
T Consensus 248 vSL~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL 313 (371)
T 3i2d_A 248 MSLQCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDIL 313 (371)
T ss_dssp EESBCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHH
T ss_pred EeecCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHH
Confidence 346799988888 899999999997 66555555443333 999999999887777655554433
No 83
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=90.51 E-value=0.27 Score=41.96 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=46.1
Q ss_pred CCCcccccccccCCCCCeEEcCCCCc--cCHHHHHHHhhcCC--CcccccccccccchhhhhHHHHHh
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHH--FHLSCILEWNERSE--SCPICDQVLIILKDAVFRYVIVAT 197 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~--Fh~~CI~~Wl~~~~--~CP~Cr~~~~~~~~~~~~~~~~~~ 197 (207)
-...|+|=+..+ ..|++-..|.|. |-..=+..+..+.. .||+|.+.+...+..+..++....
T Consensus 214 vSL~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL 279 (360)
T 4fo9_A 214 VSLMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL 279 (360)
T ss_dssp EESBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHH
T ss_pred EeeeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHH
Confidence 345799998888 899999999998 76665555554433 999999999887777655554443
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.64 E-value=0.25 Score=29.63 Aligned_cols=44 Identities=25% Similarity=0.621 Sum_probs=29.1
Q ss_pred cccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCcccccc
Q 028554 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (207)
Q Consensus 137 ~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~ 180 (207)
.|.||...-+.++-+.--.|...||..|+..=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998765334444444788899999996433221 27999965
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.48 E-value=0.21 Score=31.39 Aligned_cols=46 Identities=26% Similarity=0.692 Sum_probs=31.8
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc----CCCcccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (207)
...+..|.||... ++-+.--.|...||..|+..-+.. .-.||.|++
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3566789999873 343343467789999999875432 228999965
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.45 E-value=0.12 Score=32.56 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCcccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVL 182 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~~~ 182 (207)
..+..|.||... ++-+.--.|...||..|+..-+... -.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999863 3443334677899999998544322 2799997654
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=87.49 E-value=0.15 Score=39.21 Aligned_cols=48 Identities=27% Similarity=0.506 Sum_probs=33.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVLI 183 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~~~~ 183 (207)
.+++.|.||... ++-+.--.|...||..|+...+... -.||.|+....
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 356789999854 4444444688899999997655432 27999987543
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=87.42 E-value=0.082 Score=33.12 Aligned_cols=48 Identities=23% Similarity=0.568 Sum_probs=32.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVLI 183 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~~~~ 183 (207)
..++.|.||... ++-+.--.|...||..|+..-+... -.||.|.....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 356789999874 4444445788899999998544322 27999976543
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.15 E-value=0.14 Score=31.55 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=31.4
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCcccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~ 180 (207)
...++.|.||... ++-+.--.|...||..|+..-+... -.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4567789999874 3444445688899999997544322 16888853
No 90
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=84.22 E-value=0.18 Score=39.58 Aligned_cols=48 Identities=25% Similarity=0.500 Sum_probs=32.7
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCcccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVL 182 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~~~ 182 (207)
...++.|.+|... ++-+.--.|...||..|+...+... -.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3466789999854 2332333577899999997665432 2899998754
No 91
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=84.04 E-value=0.35 Score=37.39 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=33.3
Q ss_pred CCcccccccccCCCC----CeEEcCCCCccCHHHHHH------Hhh-----cCCCccccccccc
Q 028554 135 EDTCPICLEEYDTEN----PKLITKCEHHFHLSCILE------WNE-----RSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~~~----~~~~lpC~H~Fh~~CI~~------Wl~-----~~~~CP~Cr~~~~ 183 (207)
+..|+||...|..++ =+.--.|...||..|+.- -+. ..-.||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 346999999996554 223336789999999832 121 1469999988644
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.74 E-value=0.95 Score=28.74 Aligned_cols=34 Identities=29% Similarity=0.663 Sum_probs=22.7
Q ss_pred CCCCCcccccccccCCCCCe-EEc-CCCCccCHHHH
Q 028554 132 SEEEDTCPICLEEYDTENPK-LIT-KCEHHFHLSCI 165 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~-~~l-pC~H~Fh~~CI 165 (207)
.+....|.+|...+..+... .-- .|.-.||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 35667899999998544333 233 68889999998
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.72 E-value=0.2 Score=31.92 Aligned_cols=46 Identities=26% Similarity=0.551 Sum_probs=31.8
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQV 181 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~~ 181 (207)
..++.|.||... ++-+.--.|...||..|+..-+... -.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 467789999864 3444444688899999997544322 279999653
No 94
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=83.18 E-value=0.29 Score=33.18 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=32.6
Q ss_pred cCCCCCcccccccccC-CC-CCeEEcCCCCccCHHHHHHHhh--cCCCccccccccc
Q 028554 131 ASEEEDTCPICLEEYD-TE-NPKLITKCEHHFHLSCILEWNE--RSESCPICDQVLI 183 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~-~~-~~~~~lpC~H~Fh~~CI~~Wl~--~~~~CP~Cr~~~~ 183 (207)
..+++..|.||..... .. +-+.--.|.-.||..|+..-+. ..-.||.|.....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 3457788999987531 11 2222235778999999974321 1227999976543
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=82.36 E-value=0.54 Score=30.48 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=31.5
Q ss_pred cCCCCCccccccccc-CCCCC-eEEcCCCCccCHHHHHHHhh--cCCCcccccc
Q 028554 131 ASEEEDTCPICLEEY-DTENP-KLITKCEHHFHLSCILEWNE--RSESCPICDQ 180 (207)
Q Consensus 131 ~~ee~~~C~ICle~~-~~~~~-~~~lpC~H~Fh~~CI~~Wl~--~~~~CP~Cr~ 180 (207)
...+++.|.||...- ...+. +.--.|.-.||..|+..-.. ..=.|+.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345777899998764 12223 23336888999999964221 1227888854
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.87 E-value=0.16 Score=34.78 Aligned_cols=49 Identities=18% Similarity=0.494 Sum_probs=32.5
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc----CCCccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQV 181 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~----~~~CP~Cr~~ 181 (207)
.+...|.||...-....-+.--.|...||..|+..=+.. .=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 466689999976533334444468889999999743322 1279999654
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.55 E-value=0.57 Score=32.30 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=30.4
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc---CCCccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQV 181 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~---~~~CP~Cr~~ 181 (207)
+...| ||-...+.+.-+.--.|.-.||..|+..=+.. .-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 44567 89776644444444578899999998642221 2389999753
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.32 E-value=3.5 Score=28.79 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=23.7
Q ss_pred CCCCccccccccc------CCCCCeEEcCCCCccCHHHHH
Q 028554 133 EEEDTCPICLEEY------DTENPKLITKCEHHFHLSCIL 166 (207)
Q Consensus 133 ee~~~C~ICle~~------~~~~~~~~lpC~H~Fh~~CI~ 166 (207)
+....|.+|+..- ..++-+.-..|+..||..||.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3556799998753 223344455788999999995
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.83 E-value=0.83 Score=30.96 Aligned_cols=47 Identities=26% Similarity=0.644 Sum_probs=32.4
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQV 181 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~~ 181 (207)
.+.++.|.||... ++-+.--.|.-.||..|+..=+... -.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3567789999864 3443444577789999996655332 279999764
No 100
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.52 E-value=1.3 Score=29.12 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=31.1
Q ss_pred CCCCcccccccccCC-CCCeEEcCCCCccCHHHHHHHh-----hcCCCcccccccc
Q 028554 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWN-----ERSESCPICDQVL 182 (207)
Q Consensus 133 ee~~~C~ICle~~~~-~~~~~~lpC~H~Fh~~CI~~Wl-----~~~~~CP~Cr~~~ 182 (207)
.+...| ||...++. ..-+.--.|...||..|+.--. .....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344456 99888742 3333444688899999994211 1344999998753
No 101
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=78.03 E-value=1.8 Score=25.94 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=26.9
Q ss_pred cccccccccCCCCC-eEEc-CCCCccCHHHHHHH----hhcCCCccccc
Q 028554 137 TCPICLEEYDTENP-KLIT-KCEHHFHLSCILEW----NERSESCPICD 179 (207)
Q Consensus 137 ~C~ICle~~~~~~~-~~~l-pC~H~Fh~~CI~~W----l~~~~~CP~Cr 179 (207)
.|.||...+..+.. +.-- .|.-.||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47899888843333 2222 57889999998421 13455888885
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.95 E-value=0.89 Score=30.23 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=27.8
Q ss_pred CCCCcccccccccCCCCCeEEcC--CCCccCHHHHHHHhhcC
Q 028554 133 EEEDTCPICLEEYDTENPKLITK--CEHHFHLSCILEWNERS 172 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lp--C~H~Fh~~CI~~Wl~~~ 172 (207)
.....|.+|.+.++...-+. -| =.|.||..|-+..++..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHhc
Confidence 45567999999995544432 11 13999999999888753
No 103
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=75.91 E-value=1.3 Score=27.73 Aligned_cols=43 Identities=23% Similarity=0.519 Sum_probs=29.8
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~C 178 (207)
..|--|+..+.......-..|++.||.+|=.-.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999988322223457899999999943333555699988
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=75.45 E-value=0.65 Score=29.80 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=30.6
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHh---hcCCCcccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWN---ERSESCPICDQ 180 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl---~~~~~CP~Cr~ 180 (207)
..+...| ||...+..+.-+.--.|...||..|+.--. .....||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3456668 998876422233444688899999985322 12348988865
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.24 E-value=0.38 Score=32.54 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=32.6
Q ss_pred CCCCcccccccccCC-CCCe-EEcCCCCccCHHHHHHHhhc--------CCCcccccccc
Q 028554 133 EEEDTCPICLEEYDT-ENPK-LITKCEHHFHLSCILEWNER--------SESCPICDQVL 182 (207)
Q Consensus 133 ee~~~C~ICle~~~~-~~~~-~~lpC~H~Fh~~CI~~Wl~~--------~~~CP~Cr~~~ 182 (207)
+++..|.||...-.. .+.+ .--.|...||..|+..-|.. .-.|+.|+...
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 456789999976422 2332 22367889999999765431 22899997644
No 106
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.95 E-value=1.7 Score=29.56 Aligned_cols=46 Identities=24% Similarity=0.484 Sum_probs=27.6
Q ss_pred CCCCcccccccccCCCCCeEEcC--CC-CccCHHHHHHHhhc----CCCcccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQVL 182 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lp--C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~~~ 182 (207)
.+...| ||..... +.-+.--. |. ..||..||. |.. +-.||.|+...
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344557 9988652 22212123 55 589999996 322 23899997754
No 107
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.55 E-value=1.6 Score=28.29 Aligned_cols=46 Identities=26% Similarity=0.498 Sum_probs=30.0
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHH---------hhcCCCccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEW---------NERSESCPICDQV 181 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~W---------l~~~~~CP~Cr~~ 181 (207)
...| ||...+..+.-+.--.|...||..|+.-- ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4456 89887743333334468899999999421 1245699999764
No 108
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.41 E-value=0.78 Score=30.20 Aligned_cols=45 Identities=20% Similarity=0.531 Sum_probs=28.1
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc-----CCCcccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-----~~~CP~Cr~ 180 (207)
..|.||...-..+.-+.--.|...||..|+..=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378899864322333333467889999999743321 126888864
No 109
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.84 E-value=1.4 Score=27.72 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=32.9
Q ss_pred CCCCCcccccccccCC--CCCeEEcCCCCccCHHHHHHHhh-------cCCCcccccccc
Q 028554 132 SEEEDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNE-------RSESCPICDQVL 182 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~--~~~~~~lpC~H~Fh~~CI~~Wl~-------~~~~CP~Cr~~~ 182 (207)
..++..|.||...... +.-+.--.|...||..|+..-+. ..-.|+.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3567789999976422 22223336778999999875332 223899996643
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.15 E-value=1.3 Score=29.02 Aligned_cols=48 Identities=21% Similarity=0.471 Sum_probs=29.8
Q ss_pred CCCcccccccccCCCCCeEEc--CCCCccCHHHHHHHh---------hcCCCcccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWN---------ERSESCPICDQVL 182 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~l--pC~H~Fh~~CI~~Wl---------~~~~~CP~Cr~~~ 182 (207)
+...| ||-.....+.-|.-- .|...||..|+.--- ..+..||.|+...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45567 898764223222222 688999999995321 1345999997643
No 111
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=70.85 E-value=0.92 Score=35.01 Aligned_cols=45 Identities=27% Similarity=0.631 Sum_probs=30.1
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCcccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVL 182 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~~~ 182 (207)
++.|.+|... ++-+.--.|...||..|+..=+... -.||.|+...
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999865 3443444577899999996544321 2799997653
No 112
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.52 E-value=1.4 Score=30.89 Aligned_cols=44 Identities=27% Similarity=0.585 Sum_probs=27.9
Q ss_pred cccccccccC-CCCCeEEcCCCCccCHHHHHHHhhcC----CCcccccc
Q 028554 137 TCPICLEEYD-TENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (207)
Q Consensus 137 ~C~ICle~~~-~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~ 180 (207)
.|.||...-. .++-+.--.|...||..|+..-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5788876432 22333334688999999997544332 27999975
No 113
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=70.51 E-value=2.2 Score=29.90 Aligned_cols=44 Identities=23% Similarity=0.530 Sum_probs=27.7
Q ss_pred cCCCCCcccccccccCCCCCeEEc---CCCCccCHHHHHHHhhcCC----Ccccccc
Q 028554 131 ASEEEDTCPICLEEYDTENPKLIT---KCEHHFHLSCILEWNERSE----SCPICDQ 180 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~~~~~~~~l---pC~H~Fh~~CI~~Wl~~~~----~CP~Cr~ 180 (207)
..++++.|.+|.+. ++ ++.- .|...||..|+. |.... .||.|.-
T Consensus 11 ~~~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp CCSSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred cCCCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 34677789999842 33 3333 377899999996 43221 5775543
No 114
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=70.45 E-value=2 Score=27.67 Aligned_cols=46 Identities=24% Similarity=0.484 Sum_probs=27.4
Q ss_pred CCCCcccccccccCCCCCeEEcC--CC-CccCHHHHHHHhhc----CCCcccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQVL 182 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lp--C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~~~ 182 (207)
.+...| ||..... +.-+.--. |. ..||..||. |.. +-.||.|+...
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345567 8987642 22111113 55 589999996 332 22899997654
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=68.81 E-value=0.76 Score=29.62 Aligned_cols=44 Identities=23% Similarity=0.590 Sum_probs=25.3
Q ss_pred cccccccccCCCCCeEEcCCCCccCHHHHHHHhhc-----CCCcccccc
Q 028554 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (207)
Q Consensus 137 ~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-----~~~CP~Cr~ 180 (207)
.|.||...-+.+.-+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677643211222222357789999999743322 227888865
No 116
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=66.51 E-value=3.2 Score=28.84 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=32.1
Q ss_pred CCcccccccccCCCCCeEEc--CCCCccCHHHHHHH------h----hcCCCccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEW------N----ERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~l--pC~H~Fh~~CI~~W------l----~~~~~CP~Cr~~~~ 183 (207)
...|.||...|......+.- .|.-.||..|+.-= + ...-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 35799999998544333322 57889999998411 1 13348999987543
No 117
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=66.17 E-value=5.6 Score=28.78 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=31.3
Q ss_pred CCCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHh------hc-----CCCccccccc
Q 028554 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWN------ER-----SESCPICDQV 181 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl------~~-----~~~CP~Cr~~ 181 (207)
...++.|.||-+-- +-+.--.|-..||..||.+-+ +. .=.|++|+-.
T Consensus 54 Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 44667799998642 322223677999999998642 21 1299999664
No 118
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.92 E-value=2 Score=34.22 Aligned_cols=46 Identities=22% Similarity=0.528 Sum_probs=26.0
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhc-----CCCcccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-----~~~CP~Cr~ 180 (207)
+..|.+|...-..+.-+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3468888764322334344468899999999843321 126999965
No 119
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=62.88 E-value=1 Score=29.64 Aligned_cols=44 Identities=23% Similarity=0.581 Sum_probs=24.3
Q ss_pred cccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC-----CCcccccc
Q 028554 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-----ESCPICDQ 180 (207)
Q Consensus 137 ~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-----~~CP~Cr~ 180 (207)
.|.||...-+.+.-+.--.|...||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355555443212222223577899999998544321 26888865
No 120
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=62.37 E-value=1.6 Score=24.06 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=6.5
Q ss_pred CCCccccccccc
Q 028554 134 EEDTCPICLEEY 145 (207)
Q Consensus 134 e~~~C~ICle~~ 145 (207)
+...||||+..+
T Consensus 4 EGFiCP~C~~~l 15 (34)
T 3mjh_B 4 EGFICPQCMKSL 15 (34)
T ss_dssp EEEECTTTCCEE
T ss_pred cccCCcHHHHHc
Confidence 345566665555
No 121
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=61.84 E-value=1.6 Score=32.81 Aligned_cols=48 Identities=21% Similarity=0.446 Sum_probs=30.7
Q ss_pred CCCCcccccccccCCC-CCeEEcCCCCccCHHHHHHHh-----hcCCCccccccc
Q 028554 133 EEEDTCPICLEEYDTE-NPKLITKCEHHFHLSCILEWN-----ERSESCPICDQV 181 (207)
Q Consensus 133 ee~~~C~ICle~~~~~-~~~~~lpC~H~Fh~~CI~~Wl-----~~~~~CP~Cr~~ 181 (207)
++...| ||...++.. .-+.--.|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456678 999876322 223334678899999994211 224489999764
No 122
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.46 E-value=15 Score=24.81 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=34.6
Q ss_pred CCCcccccccccCC---CCC-eEEcCCCCccCHHHHH-HHhhcCCCccccccccc
Q 028554 134 EEDTCPICLEEYDT---ENP-KLITKCEHHFHLSCIL-EWNERSESCPICDQVLI 183 (207)
Q Consensus 134 e~~~C~ICle~~~~---~~~-~~~lpC~H~Fh~~CI~-~Wl~~~~~CP~Cr~~~~ 183 (207)
....|.||=+.+.. ++. +..-.|+--.|..|+. ++-+.++.||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44689999998721 222 1223566778999984 45577889999988764
No 123
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.41 E-value=4.2 Score=25.37 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=29.0
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
...|..|-..+...+. .+..-+..||..|. +|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCCC
Confidence 4579999888844334 44566788888885 78888887653
No 124
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=57.58 E-value=4.1 Score=28.05 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=11.3
Q ss_pred ccCHHHHHHHhhc
Q 028554 159 HFHLSCILEWNER 171 (207)
Q Consensus 159 ~Fh~~CI~~Wl~~ 171 (207)
.||..||.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999963
No 125
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=57.24 E-value=4.2 Score=27.95 Aligned_cols=13 Identities=23% Similarity=0.736 Sum_probs=11.3
Q ss_pred ccCHHHHHHHhhc
Q 028554 159 HFHLSCILEWNER 171 (207)
Q Consensus 159 ~Fh~~CI~~Wl~~ 171 (207)
.||..||.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999963
No 126
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.04 E-value=1.9 Score=30.10 Aligned_cols=44 Identities=16% Similarity=0.442 Sum_probs=27.1
Q ss_pred cccccccccCCCCCeEEcCCCCccCHHHHHHHhhc----CCCcccccc
Q 028554 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (207)
Q Consensus 137 ~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (207)
.|.||...-+...-+.--.|...||..|+..=+.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 47777765432233334467789999999754432 227888854
No 127
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=56.02 E-value=8.1 Score=24.53 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=25.7
Q ss_pred cCCCCCcccccccccCCCCCeEEcCC-CCccCHHHHHHH
Q 028554 131 ASEEEDTCPICLEEYDTENPKLITKC-EHHFHLSCILEW 168 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~~~~~~~~lpC-~H~Fh~~CI~~W 168 (207)
..++..-|.||.++- .++-+-| +-.||..|..+.
T Consensus 4 ~~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 446777899999863 3567788 678999998764
No 128
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.91 E-value=6.6 Score=24.48 Aligned_cols=40 Identities=23% Similarity=0.533 Sum_probs=25.0
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|..|-..+...+. .+..=+..||..|+ .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGA-GVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSC-CEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCce-EEEECCCeEcccCC--------cccccCCcCC
Confidence 3468888776633222 33445677887775 6778877763
No 129
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.88 E-value=1.4 Score=28.37 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=30.4
Q ss_pred CCCCcccccccccCCCC-CeEEcCCCCccCHHHHHHHh----hcCCCccccccc
Q 028554 133 EEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWN----ERSESCPICDQV 181 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~-~~~~lpC~H~Fh~~CI~~Wl----~~~~~CP~Cr~~ 181 (207)
.+...| ||...++.+. -+.--.|...||..|+.--. .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 445568 7987763332 33344678899999985321 233489999764
No 130
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.60 E-value=7.3 Score=24.30 Aligned_cols=40 Identities=23% Similarity=0.548 Sum_probs=28.2
Q ss_pred CCcccccccccCC--CCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~--~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|..|-..+.. ... .+..-+..||..|+ .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCC
Confidence 4578999888843 223 33556788998885 7888888764
No 131
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.59 E-value=7.4 Score=25.59 Aligned_cols=40 Identities=15% Similarity=0.492 Sum_probs=29.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
.....|..|-..+ ... .+..-+..||..|+ .|-.|++.|.
T Consensus 23 ~~~~~C~~C~~~I--~~~-~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVI--RGP-FLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBC--CSC-EEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCccCCCEe--cce-EEEECCccccccCC--------ccCCCCCCCC
Confidence 3456799999888 333 33556888998886 7889988775
No 132
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=55.03 E-value=1.8 Score=26.83 Aligned_cols=40 Identities=28% Similarity=0.629 Sum_probs=24.5
Q ss_pred CCCcccccccccCCCCCeEEcC-----CC-CccCHHHHHHHhhc----CCCcccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITK-----CE-HHFHLSCILEWNER----SESCPICDQ 180 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lp-----C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (207)
+..-| ||.... . . .++- |. ..||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~--~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS--Y-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC--C-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC--C-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34446 998764 2 2 2333 44 579999997 332 228898864
No 133
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=54.86 E-value=1.1 Score=28.60 Aligned_cols=45 Identities=24% Similarity=0.563 Sum_probs=26.1
Q ss_pred CCCcccccccccCCCCCeEEc---CCCCccCHHHHHHHh---h-----cCCCcccccc
Q 028554 134 EEDTCPICLEEYDTENPKLIT---KCEHHFHLSCILEWN---E-----RSESCPICDQ 180 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~l---pC~H~Fh~~CI~~Wl---~-----~~~~CP~Cr~ 180 (207)
+...| ||-...+.+.- +.- .|...||..|+.--- . .+..||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~m-I~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSM-IQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCE-EECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCE-EEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34456 89665432322 222 377899999983210 0 1347999975
No 134
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.86 E-value=7.1 Score=25.21 Aligned_cols=40 Identities=25% Similarity=0.631 Sum_probs=29.1
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
....|.-|-..+...+.+ ..-+..||..|+ .|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSL--LALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCE--EETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEE--EECCcccccccC--------CcCcCCCCcC
Confidence 455799999888544443 335788998885 7999988774
No 135
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.13 E-value=4.6 Score=25.20 Aligned_cols=40 Identities=18% Similarity=0.384 Sum_probs=27.3
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
..|..|-..+...+. .+..-+..||..|. .|-.|++.|..
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTR-KMEYKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSC-EEEETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCce-EEEECcCeecccCC--------cccccCCccCC
Confidence 468888888844333 33445778887775 78888877653
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=53.60 E-value=1.7 Score=31.11 Aligned_cols=49 Identities=18% Similarity=0.529 Sum_probs=31.3
Q ss_pred CCCCcccccccccCCCCCe-EEcCCCCccCHHHHHHHhhcCCCccccccc
Q 028554 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNERSESCPICDQV 181 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~-~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~ 181 (207)
.+...|.+|...|...... .--.||..||..|....+.....|-.|-..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3456799999998443222 345799999999987766666688888543
No 137
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.53 E-value=6.1 Score=25.36 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=29.3
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
...|..|-..+...+.+ +..-+..||..|+ .|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCC
Confidence 35799999888544543 3556788898885 78889887753
No 138
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.91 E-value=7.7 Score=24.80 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=29.5
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
....|..|-..+.. . .+..-+..||..|+ .|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--V-FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS--S-CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC--c-EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 45679999998843 3 34566889999886 7999988774
No 139
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=52.40 E-value=2.2 Score=26.38 Aligned_cols=43 Identities=26% Similarity=0.513 Sum_probs=25.0
Q ss_pred CCCcccccccccCCCCCeEEcC--CC-CccCHHHHHHHhhc----CCCcccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lp--C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (207)
+..-| ||..... +.-+.--. |. ..||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44446 9987641 22111123 55 589999996 322 228998865
No 140
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=52.14 E-value=3 Score=26.57 Aligned_cols=43 Identities=7% Similarity=-0.038 Sum_probs=20.2
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCH-HHHHHHhhcCCCcccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHL-SCILEWNERSESCPICDQ 180 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~-~CI~~Wl~~~~~CP~Cr~ 180 (207)
+=..|..|...+... . ....=+..||. .|..+-+ ...|-.|..
T Consensus 26 ~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~~cy~~~f--~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSG-G-HAEHEGKPYCNHPCYSAMF--GPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTT-T-EEEETTEEEETTTHHHHHS--SCCCSSCCC
T ss_pred CCCCccccCccCCCC-c-eECcCCeEeeCHHHHHHHh--CccCCCcCC
Confidence 345566666655322 1 22333455665 4654432 234555543
No 141
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=51.84 E-value=13 Score=27.73 Aligned_cols=47 Identities=19% Similarity=0.492 Sum_probs=31.4
Q ss_pred ccCCCCCcccccccccCCCCCeEEc---CCCCccCHHHHHHHhhcCC----------Ccccccc
Q 028554 130 AASEEEDTCPICLEEYDTENPKLIT---KCEHHFHLSCILEWNERSE----------SCPICDQ 180 (207)
Q Consensus 130 ~~~ee~~~C~ICle~~~~~~~~~~l---pC~H~Fh~~CI~~Wl~~~~----------~CP~Cr~ 180 (207)
+....+.-|.||-+. ..++.- .|...||..||..++-... .|=+|.-
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 344456679999763 232222 4778999999999885421 6877754
No 142
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=50.63 E-value=9 Score=25.58 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=26.9
Q ss_pred CCCCCcccccccccCCCCCe-EEcCCCCccCHHHHHHH
Q 028554 132 SEEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~~~~~-~~lpC~H~Fh~~CI~~W 168 (207)
.++...|.+|...|...... .--.||+.||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 45667899999999544332 33479999999997654
No 143
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.02 E-value=9 Score=28.47 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=34.6
Q ss_pred CCCCccccccccc--CCCCCeEEcCCCCccCHHHHHHHhhcCC--Ccccccccc
Q 028554 133 EEEDTCPICLEEY--DTENPKLITKCEHHFHLSCILEWNERSE--SCPICDQVL 182 (207)
Q Consensus 133 ee~~~C~ICle~~--~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~--~CP~Cr~~~ 182 (207)
..+..|.+|+..| -......-..|.|.+|..|= .|..... .|-+|++.-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~r 118 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLAR 118 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHHH
Confidence 3578899999987 22344466789999999996 3443222 789997753
No 144
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.85 E-value=4.2 Score=25.84 Aligned_cols=40 Identities=20% Similarity=0.554 Sum_probs=28.5
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
....|..|-+.+...+. +..-+..||..|. .|..|++.|.
T Consensus 8 ~~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEK--VSSLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTTE--EEETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCeE--EEECCeEeeCCCC--------CCCCCCCccC
Confidence 34579999988854333 3445778888885 7889988775
No 145
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=49.67 E-value=10 Score=26.78 Aligned_cols=40 Identities=20% Similarity=0.450 Sum_probs=29.9
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
....|.-|-..+. ...++..-+..||..|+ .|-.|++.|.
T Consensus 60 ~~~~C~~C~~~I~--~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIA--DRFLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCC--SSSEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred cCCcCcCCCCCcC--CcEEEEeCCcEEccccc--------CcCcCCCccc
Confidence 4568999998884 33234556888998885 8999998874
No 146
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.87 E-value=5.9 Score=25.04 Aligned_cols=42 Identities=19% Similarity=0.487 Sum_probs=29.2
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
....|.-|-..+...+. .+..-+..||..|. .|-.|++.+..
T Consensus 10 ~~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEK-IVNSNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTT-CEEETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCce-EEEeCccEeccccC--------eECCCCCCCCC
Confidence 34579999988854344 23445778888885 78888887753
No 147
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.73 E-value=6.7 Score=24.86 Aligned_cols=40 Identities=20% Similarity=0.539 Sum_probs=28.5
Q ss_pred CCcccccccccCC--CCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~--~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|..|-..+.. ... .+..-+..||..|+ .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCC
Confidence 3579999988843 223 34556788998885 7888988774
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=48.27 E-value=1.7 Score=30.58 Aligned_cols=46 Identities=20% Similarity=0.544 Sum_probs=28.5
Q ss_pred cccccccccCCCCCeEEcCCCCccCHHHHHHHhhcC----CCcccccccc
Q 028554 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQVL 182 (207)
Q Consensus 137 ~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~~~ 182 (207)
.|.||...-..+.-+.--.|...||..|+..=|... -.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 578887654333333334677899999997433221 1688886543
No 149
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.95 E-value=7.6 Score=25.14 Aligned_cols=41 Identities=29% Similarity=0.573 Sum_probs=28.9
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
....|..|-..+...+.+ ..-+..||..|+ .|-.|++.|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v--~a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERL--CVNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBC--CBTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEE--EECCCeeCCCcC--------EEcCCCCCcCC
Confidence 456799999887433332 345778998885 78889887653
No 150
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=47.93 E-value=3.1 Score=24.87 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=24.8
Q ss_pred ccccccCCCCCeEEcCCCCccCHHHHHHHh---hcCCCcccccc
Q 028554 140 ICLEEYDTENPKLITKCEHHFHLSCILEWN---ERSESCPICDQ 180 (207)
Q Consensus 140 ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl---~~~~~CP~Cr~ 180 (207)
||......+.-+.--.|...||..|+.--. .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 676655322333334677899999985322 23348888864
No 151
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.37 E-value=7.9 Score=28.09 Aligned_cols=50 Identities=18% Similarity=0.405 Sum_probs=33.2
Q ss_pred CCCCcccccccccC-CC-CCeEEcCCCCccCHHHHHHHhhcC----CCcccccccc
Q 028554 133 EEEDTCPICLEEYD-TE-NPKLITKCEHHFHLSCILEWNERS----ESCPICDQVL 182 (207)
Q Consensus 133 ee~~~C~ICle~~~-~~-~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~Cr~~~ 182 (207)
..+..|.+|...|. .. ....-.-|.|.+|..|=..--..+ -.|-+|++.-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~r 108 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQR 108 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHHH
Confidence 56778999999993 22 334556899999999954211111 1788887743
No 152
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=47.29 E-value=12 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=26.3
Q ss_pred CCCCcccccccccCCCCCe-EEcCCCCccCHHHHHHH
Q 028554 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~-~~lpC~H~Fh~~CI~~W 168 (207)
.+...|.+|...|...... .--.||+.||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4566899999999543332 33479999999997654
No 153
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.04 E-value=11 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=26.8
Q ss_pred CCCCcccccccccCCCCC-eEEcCCCCccCHHHHHHHh
Q 028554 133 EEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWN 169 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~-~~~lpC~H~Fh~~CI~~Wl 169 (207)
.+...|.+|...|..... -.--.||+.||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345679999999954332 2345799999999987654
No 154
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.44 E-value=3.2 Score=25.76 Aligned_cols=37 Identities=22% Similarity=0.660 Sum_probs=24.2
Q ss_pred CCcccccccccCCC---CCeEEcC--CCCccCHHHHHHHhhc
Q 028554 135 EDTCPICLEEYDTE---NPKLITK--CEHHFHLSCILEWNER 171 (207)
Q Consensus 135 ~~~C~ICle~~~~~---~~~~~lp--C~H~Fh~~CI~~Wl~~ 171 (207)
...|+-|...++-. +.+.-.. |++.||..|...|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 34688887776322 2222223 8899999999888754
No 155
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.04 E-value=8.2 Score=27.08 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=4.6
Q ss_pred ccccccccc
Q 028554 137 TCPICLEEY 145 (207)
Q Consensus 137 ~C~ICle~~ 145 (207)
.|..|-..+
T Consensus 10 ~C~~C~~~I 18 (123)
T 2l3k_A 10 LCASCDKRI 18 (123)
T ss_dssp CCSSSSCCC
T ss_pred cccCCCCee
Confidence 355555544
No 156
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=45.73 E-value=7.1 Score=24.10 Aligned_cols=42 Identities=19% Similarity=0.448 Sum_probs=29.4
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
....|..|-..+...+.+ +..=+..||..|. .|-.|++.+..
T Consensus 10 ~~~~C~~C~~~i~~~e~~-~~~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEE-EEETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceE-EEeCcCeeCcCCC--------cccCCCCCCCC
Confidence 345799999888544443 3456778888886 78889887753
No 157
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=44.15 E-value=4.1 Score=27.58 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCCCcccccccccCCCCCeEEcCCC---CccCHHHHHHHhh----cCCCccc-ccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCE---HHFHLSCILEWNE----RSESCPI-CDQ 180 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~---H~Fh~~CI~~Wl~----~~~~CP~-Cr~ 180 (207)
++..-| ||..... ++-+.--.|. ..||..||. |. ..-.||. |++
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 445557 9987542 2222222333 589999995 22 1238999 964
No 158
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.79 E-value=8.7 Score=23.76 Aligned_cols=39 Identities=26% Similarity=0.571 Sum_probs=25.9
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
...|..|-..+. .. .+..-+..||..|+ .|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFII--GR-VIKAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCC--SC-CEEETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEec--ce-EEEECcccccccCC--------EeCCCCCcCCC
Confidence 456888888774 22 23445677887775 78888776653
No 159
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.72 E-value=13 Score=24.31 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=25.0
Q ss_pred CCCCcccccccccCCCCCe-EEcCCCCccCHHHHHH
Q 028554 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILE 167 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~-~~lpC~H~Fh~~CI~~ 167 (207)
++...|.+|...|...... .--.||..||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4556799999999443322 3347999999999654
No 160
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=43.43 E-value=13 Score=24.34 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=25.7
Q ss_pred CCCCcccccccccCCCCCe-EEcCCCCccCHHHHHHH
Q 028554 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~-~~lpC~H~Fh~~CI~~W 168 (207)
.+...|.+|...|...... .--.||..||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4556799999999443322 33479999999997654
No 161
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.17 E-value=17 Score=25.25 Aligned_cols=53 Identities=9% Similarity=-0.064 Sum_probs=35.9
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
.+=..|..|...+..........=+..||..|..+-+..+..|-.|.+.|...
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 34467888888773111113355667889999888776666899999988753
No 162
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.15 E-value=12 Score=24.37 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=28.8
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
....|..|-+.+.. . .+..-+..||..|+ .|-.|++.|..
T Consensus 24 ~~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG--A-VVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS--C-CEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc--c-EEEECCceECccCC--------EecCCCCCCCC
Confidence 44579999988842 3 34557788998885 78889887753
No 163
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.98 E-value=13 Score=26.50 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=25.5
Q ss_pred CCCCcccccccccCCCCCe-EEcCCCCccCHHHHHHH
Q 028554 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~-~~lpC~H~Fh~~CI~~W 168 (207)
.+...|.+|...|...... .--.||+.||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3456799999999443322 33479999999997554
No 164
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=42.81 E-value=22 Score=30.44 Aligned_cols=48 Identities=17% Similarity=0.408 Sum_probs=32.8
Q ss_pred cCCCCCcccccccccCCCCCeEEc--CCCCccCHHHHHHHhhcC----------CCccccccc
Q 028554 131 ASEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNERS----------ESCPICDQV 181 (207)
Q Consensus 131 ~~ee~~~C~ICle~~~~~~~~~~l--pC~H~Fh~~CI~~Wl~~~----------~~CP~Cr~~ 181 (207)
....+.-|.||-+. ++-+.-- .|...||..||++++-.. =.|=+|.-.
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34456679999864 2333333 788999999999988322 178888654
No 165
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.27 E-value=10 Score=24.95 Aligned_cols=39 Identities=26% Similarity=0.625 Sum_probs=23.6
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|.-|-..+...+ .+..-+..||..|+ .|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~--~v~a~~~~~H~~CF--------~C~~C~~~L~ 53 (91)
T 2d8y_A 15 RETCVECQKTVYPME--RLLANQQVFHISCF--------RCSYCNNKLS 53 (91)
T ss_dssp SCBCTTTCCBCCTTS--EEECSSSEEETTTC--------BCTTTCCBCC
T ss_pred CCcCccCCCccCCce--eEEECCCEECCCCC--------eeCCCCCCCC
Confidence 446777777763322 23455667777764 5777766554
No 166
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.05 E-value=11 Score=23.74 Aligned_cols=37 Identities=27% Similarity=0.624 Sum_probs=24.3
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
..|.-|-..+.. . .+..-+..||..|+ +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~--~-~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG--R-VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS--C-CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC--e-eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 467888777632 2 33556677887774 6777777664
No 167
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.00 E-value=15 Score=22.62 Aligned_cols=37 Identities=24% Similarity=0.537 Sum_probs=24.5
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
..|..|-..+. .. .+..-+..||..|. .|-.|++.|.
T Consensus 6 ~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPIT--TG-GVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCC--SS-EEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeec--cc-eEEECccccCCCCC--------ccCCCCCcCC
Confidence 46888887773 23 23455777887775 6778877663
No 168
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=40.50 E-value=16 Score=23.27 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=23.1
Q ss_pred CcccccccccCCCCCe-EEcCCCCccCHHHHHH
Q 028554 136 DTCPICLEEYDTENPK-LITKCEHHFHLSCILE 167 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~-~~lpC~H~Fh~~CI~~ 167 (207)
..|.+|...|...... .--.||+.||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 5799999998443222 3347999999999754
No 169
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.04 E-value=14 Score=28.78 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=24.9
Q ss_pred CCCcccccccccCCCCCe-EEcCCCCccCHHHHHHH
Q 028554 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~-~~lpC~H~Fh~~CI~~W 168 (207)
+...|.+|...|...... .--.||+.||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 346899999998443322 33479999999997543
No 170
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.62 E-value=12 Score=23.88 Aligned_cols=39 Identities=26% Similarity=0.611 Sum_probs=27.1
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
..|..|-..+..... ++..=+..||..|+ .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSR-ELFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCC-BCCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcE-EEEeCCccccccCC--------eecCCCCccC
Confidence 469999888843233 33445788888885 7888888775
No 171
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=38.95 E-value=4.4 Score=26.89 Aligned_cols=41 Identities=24% Similarity=0.655 Sum_probs=24.7
Q ss_pred cccccccc--CCCCCeEEcC-CCCccCHHHHHHHhhcCC--Ccccc
Q 028554 138 CPICLEEY--DTENPKLITK-CEHHFHLSCILEWNERSE--SCPIC 178 (207)
Q Consensus 138 C~ICle~~--~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~--~CP~C 178 (207)
|+-|-..+ +.....+.-+ |++.||..|-..|-+.+. +|..-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 77665544 1122324444 999999999888844443 56443
No 172
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.92 E-value=15 Score=23.38 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=27.8
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
....|.-|-..+. .. .+..-+..||..|. +|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~--~~-~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIID--EQ-PLIFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCC--SC-CCCCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCCccCCCEec--ce-EEEECcceeCCCCC--------EeCCCCCccC
Confidence 3457999988874 33 23556788888875 7888988775
No 173
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.39 E-value=4.8 Score=25.89 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=23.9
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|..|-..+...+. +..-+..||..|. .|-.|++.|.
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEEC
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCC
Confidence 3468888777743332 2445667777764 6777777664
No 174
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.11 E-value=13 Score=22.84 Aligned_cols=38 Identities=24% Similarity=0.536 Sum_probs=25.1
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|..|-..+.. . .+..-+..||..|+ .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--G-GITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--T-CEEETTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc--c-eEEECccccccCcC--------EECCCCCCCC
Confidence 3568888887742 2 22345677887775 6888887764
No 175
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=37.86 E-value=9.9 Score=23.18 Aligned_cols=38 Identities=13% Similarity=0.530 Sum_probs=26.8
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|..|-..+. .. .+..-+..||..|. .|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE--GR-VVNAMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC--SC-EECCTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCCcccCCEec--ce-EEEECccccccCcC--------EECCCCCCCC
Confidence 346888888874 33 34566778888775 7888888764
No 176
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=37.63 E-value=11 Score=25.83 Aligned_cols=43 Identities=35% Similarity=0.502 Sum_probs=27.3
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
.+..||+|..+++... ++.+|..|-.. +.....||-|.+++..
T Consensus 31 M~~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCCBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHHH
Confidence 3378999998873221 23345556332 4555699999998754
No 177
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.10 E-value=23 Score=24.63 Aligned_cols=39 Identities=21% Similarity=0.454 Sum_probs=27.9
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|.-|-..+.... ++..-+..||..|+ +|-.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~--~~~a~~~~wH~~CF--------~C~~C~~~L~ 43 (122)
T 1m3v_A 5 WKRCAGCGGKIADRF--LLYAMDSYWHSRCL--------KCSSCQAQLG 43 (122)
T ss_dssp CCCBSSSSSCCCSSC--CEEETTEEECHHHH--------CCSSSCCCTT
T ss_pred CCCCcccCCEeCCcE--EEEECCceeHhhCC--------CcCCCCCccc
Confidence 457899988874332 23445788999997 7888988774
No 178
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.75 E-value=15 Score=23.31 Aligned_cols=37 Identities=22% Similarity=0.531 Sum_probs=26.1
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
..|..|-..+.. . .+..-+..||..|+ .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~--~-~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ--G-GVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS--C-CEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecC--c-EEEECCchhhhhhC--------CcccCCCcCC
Confidence 468888887743 2 34556788888775 7888888774
No 179
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=36.69 E-value=28 Score=24.22 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
+=..|..|...+..........=+..||..|..+-+.....|..|.+.|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 33455555555522111122333445555555543332225555555553
No 180
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.49 E-value=13 Score=23.69 Aligned_cols=37 Identities=22% Similarity=0.611 Sum_probs=25.0
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
..|..|-+.+. .. .+..-+..||..|+ .|-.|++.|.
T Consensus 16 ~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT--GP-FMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC--SC-CBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CcCccCCCCcC--ce-EEEECCceeccccC--------CccCCCCccC
Confidence 46888888774 22 33455777887775 7888887764
No 181
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=36.45 E-value=11 Score=23.74 Aligned_cols=40 Identities=18% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCcccccccccCC---CCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDT---ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~---~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|+-|-..+.+ ... .+..=+..||..|. .|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCC
Confidence 3579999988853 223 33455788998885 7999988775
No 182
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=36.25 E-value=10 Score=19.35 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=9.4
Q ss_pred Cccccccccccc
Q 028554 174 SCPICDQVLIIL 185 (207)
Q Consensus 174 ~CP~Cr~~~~~~ 185 (207)
.||+|.+.++..
T Consensus 8 qcpvcqq~mpaa 19 (29)
T 3vhs_A 8 QCPVCQQMMPAA 19 (29)
T ss_dssp ECTTTCCEEEGG
T ss_pred eChHHHHhCcHH
Confidence 799998877654
No 183
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.17 E-value=12 Score=23.90 Aligned_cols=37 Identities=16% Similarity=0.539 Sum_probs=26.9
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
..|..|-..+. .. .+..-+..||..|. +|-.|++.|.
T Consensus 16 ~~C~~C~~~I~--~~-~v~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE--GE-VVSALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC--SC-CEEETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec--cc-eEEECCceeCccCC--------ccccCCCCCC
Confidence 47999998874 23 33456788898885 7888888775
No 184
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.61 E-value=19 Score=24.75 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCCCcccccccccCC-CCCeEEcCCCCccCHHHHHHHhhc
Q 028554 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171 (207)
Q Consensus 133 ee~~~C~ICle~~~~-~~~~~~lpC~H~Fh~~CI~~Wl~~ 171 (207)
.+=..|..|...+.. +.. ....=+..||..|..+-+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~-~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSC-CCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCe-eEEECCeeechHHHHHHhCc
Confidence 455677888777632 122 22344667788887665544
No 185
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=35.59 E-value=4.1 Score=25.30 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=28.3
Q ss_pred CCCCcccccccc-cCCCCCeEEcCCCCccCHHHHHHHhhcCC----Ccccccc
Q 028554 133 EEEDTCPICLEE-YDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQ 180 (207)
Q Consensus 133 ee~~~C~ICle~-~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~----~CP~Cr~ 180 (207)
.+..+|.||+.. |.++-.-.-.-|.-.||..|=.+|-.+++ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 466789999864 33333333345666777777666553333 6666664
No 186
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.36 E-value=16 Score=28.61 Aligned_cols=35 Identities=17% Similarity=0.466 Sum_probs=25.3
Q ss_pred CCCcccccccccCCCCCe-EEcCCCCccCHHHHHHH
Q 028554 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~-~~lpC~H~Fh~~CI~~W 168 (207)
+...|.+|...|...... .--.||+.||..|...+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999999543322 34579999999997654
No 187
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.73 E-value=18 Score=18.93 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=16.6
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHH
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSC 164 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~C 164 (207)
+.|+.|-..+-..+. +.-=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek--~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEK--VNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGC--CCSSSSCCCGGG
T ss_pred CcCCccCCEEeccee--EEECCeEecccC
Confidence 468888776633222 234567788777
No 188
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.02 E-value=13 Score=23.69 Aligned_cols=38 Identities=18% Similarity=0.595 Sum_probs=25.8
Q ss_pred CCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
...|..|-..+. +. .+..-+..||..|. +|..|++.|.
T Consensus 15 ~~~C~~C~~~I~--~~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPIL--DR-ILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCC--SC-CEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeec--ce-eEEECCccccHHhc--------CcccCCCccC
Confidence 456888888774 23 33455677887775 7888887764
No 189
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.77 E-value=10 Score=22.21 Aligned_cols=31 Identities=26% Similarity=0.799 Sum_probs=18.4
Q ss_pred CcccccccccCC--CCCeEEcCCCCccCHHHHHHHhhcCC--Cccccccc
Q 028554 136 DTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSE--SCPICDQV 181 (207)
Q Consensus 136 ~~C~ICle~~~~--~~~~~~lpC~H~Fh~~CI~~Wl~~~~--~CP~Cr~~ 181 (207)
..|.||--.|++ +++ ..|-+... .||+|...
T Consensus 5 y~C~vCGyvyd~~~Gd~---------------t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDN---------------VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTT---------------CCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCC---------------cchhhCCCCCcCcCCCCc
Confidence 357777776643 222 24444444 89999764
No 190
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.50 E-value=6.8 Score=24.37 Aligned_cols=43 Identities=26% Similarity=0.516 Sum_probs=24.9
Q ss_pred CCCcccccccccCCCCCeEEcC--CC-CccCHHHHHHHhhc----CCCcccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lp--C~-H~Fh~~CI~~Wl~~----~~~CP~Cr~ 180 (207)
+..-| ||..... +.-+.--. |. ..||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34446 9987541 21111113 54 789999996 222 238999965
No 191
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=31.45 E-value=3.4 Score=27.14 Aligned_cols=20 Identities=25% Similarity=0.654 Sum_probs=16.0
Q ss_pred CCCCccCHHHHHHHhhcCCCcc
Q 028554 155 KCEHHFHLSCILEWNERSESCP 176 (207)
Q Consensus 155 pC~H~Fh~~CI~~Wl~~~~~CP 176 (207)
.|+|.||..|-..|=. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999988855 4553
No 192
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=31.37 E-value=13 Score=23.73 Aligned_cols=45 Identities=27% Similarity=0.483 Sum_probs=27.9
Q ss_pred cccccccccCC-CCCeEEcCCCCccCHHHHHHHhh-----cCCCccccccc
Q 028554 137 TCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNE-----RSESCPICDQV 181 (207)
Q Consensus 137 ~C~ICle~~~~-~~~~~~lpC~H~Fh~~CI~~Wl~-----~~~~CP~Cr~~ 181 (207)
.-.||...++. +.-+.--.|.-.||..|+.---. ....||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34589877632 22233346788999999953221 23489999764
No 193
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.23 E-value=22 Score=23.54 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=32.3
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
.+=..|..|...+. .......=+..||..|..+ .....|..|.+.|...
T Consensus 31 ~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 31 DTCFRCAKCLHPLA--NETFVAKDNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTTCCCSSSCCCTT--SSCCEEETTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred hcCCcccccCCCCC--cCeeECcCCEEEChhHhhh--hcCCccccCCCccccC
Confidence 45577888888873 2223344567788888643 3345899999988643
No 194
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.77 E-value=46 Score=22.90 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=23.6
Q ss_pred CCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
+=..|..|...+. .......=+..||..|..+- ....|..|.+.|..
T Consensus 29 ~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCT--TSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCC--cCEEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 3455666666552 22223344555666665442 23356666666553
No 195
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=28.64 E-value=13 Score=32.81 Aligned_cols=44 Identities=25% Similarity=0.457 Sum_probs=27.9
Q ss_pred ccccccccCC-CCCeEEcCCCCccCHHHHHHHhh-----cCCCccccccc
Q 028554 138 CPICLEEYDT-ENPKLITKCEHHFHLSCILEWNE-----RSESCPICDQV 181 (207)
Q Consensus 138 C~ICle~~~~-~~~~~~lpC~H~Fh~~CI~~Wl~-----~~~~CP~Cr~~ 181 (207)
-.||...++. +.-+.--.|.-.||..|+.---. ..-.||.|+..
T Consensus 39 yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 39 YCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp ETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred EEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3499887642 22333446888999999943221 22489999753
No 196
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.95 E-value=15 Score=22.41 Aligned_cols=38 Identities=29% Similarity=0.649 Sum_probs=25.9
Q ss_pred cccccccccCCCCCeEEcCCCCccC--HHHHHHHhhcCCCccccccccc
Q 028554 137 TCPICLEEYDTENPKLITKCEHHFH--LSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 137 ~C~ICle~~~~~~~~~~lpC~H~Fh--~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
.|.-|-..+...+. .+..-+..|| ..|. +|-.|++.|.
T Consensus 4 ~C~~C~~~I~~~~~-~v~a~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQ-RVTYNNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSC-EEEETTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCcCCCCeeccCce-EEEECCCccCCCCCCE--------ECCCCCCcCC
Confidence 58888887744333 3344577888 8885 7888887764
No 197
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.70 E-value=4.4 Score=26.89 Aligned_cols=40 Identities=25% Similarity=0.534 Sum_probs=21.9
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
..|++|..++..... +.+|..|=.. +.....||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~-~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKD-FSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCE-EEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC-------ceECcccccc-CCCcccCcchhhHHH
Confidence 468888877733222 2234445332 223337888877764
No 198
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=26.55 E-value=30 Score=25.81 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=31.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
.+=..|..|...+.... . ..=+..||..|..+- ....|..|++.|...
T Consensus 85 ~~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~~--f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERC--F-SRGESVYCKDDFFKR--FGTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCC--E-EETTEEECHHHHHHT--TSCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCc--e-eECCEeeecCccccc--cccccccCCCccCCC
Confidence 45577888887774322 2 345677888887653 345899999887643
No 199
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.33 E-value=19 Score=22.73 Aligned_cols=38 Identities=16% Similarity=0.363 Sum_probs=24.6
Q ss_pred CcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 136 ~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
..|..|-..+.. . .+..-+..||..|+ .|-.|++.|..
T Consensus 16 ~~C~~C~~~I~~--~-~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE--N-YLSAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS--S-CEEETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc--e-eEEECCCeEecCcC--------ChhhCCCCCCC
Confidence 468888777742 2 23445677887775 68888777643
No 200
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=26.20 E-value=26 Score=17.65 Aligned_cols=6 Identities=67% Similarity=0.778 Sum_probs=3.6
Q ss_pred cCCCCC
Q 028554 6 CSSRKP 11 (207)
Q Consensus 6 c~~~~~ 11 (207)
||++|-
T Consensus 10 Cs~rWC 15 (26)
T 1q2j_A 10 CSSRWC 15 (26)
T ss_dssp CCSSSS
T ss_pred ccchhh
Confidence 666654
No 201
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.17 E-value=26 Score=25.81 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=34.4
Q ss_pred CCCCcccccccccCCCCCeEEcCCCCccCHHHHHHHhhcCCCcccccccccc
Q 028554 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQVLII 184 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~ 184 (207)
.+=..|..|...+.... . ..=|..||..|..+-+ ...|..|.+.|..
T Consensus 31 ~~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~~f--~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERC--F-SRGESVYCKDDFFKRF--GTKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCC--E-ESSSCEECHHHHHHHH--SCBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCC--c-ccCCeeeecccccccc--cccccccccccCC
Confidence 46678999998884332 2 4567889999987644 4589999998764
No 202
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.17 E-value=15 Score=25.58 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=18.3
Q ss_pred EEcCCCCccCHHHHHHHhhcCCCccccccccc
Q 028554 152 LITKCEHHFHLSCILEWNERSESCPICDQVLI 183 (207)
Q Consensus 152 ~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~ 183 (207)
.-..||+.| ..-+.....||.|+....
T Consensus 69 ~C~~CG~~F-----~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 69 QCRKCGFVF-----KAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp BBTTTCCBC-----CCCSSCCSSCSSSCCCCB
T ss_pred ChhhCcCee-----cccCCCCCCCcCCCCCcc
Confidence 557899999 122344569999987643
No 203
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.10 E-value=14 Score=31.45 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCCCcccccccccCCCCC-eEEcCCCCccCHHHHHHHh
Q 028554 133 EEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWN 169 (207)
Q Consensus 133 ee~~~C~ICle~~~~~~~-~~~lpC~H~Fh~~CI~~Wl 169 (207)
.+...|.+|...|..... -.--.||+.||..|...++
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp --------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 445679999998843222 1345799999999997654
No 204
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.06 E-value=26 Score=18.18 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=7.9
Q ss_pred CCccccccccc
Q 028554 173 ESCPICDQVLI 183 (207)
Q Consensus 173 ~~CP~Cr~~~~ 183 (207)
..||+|+..+.
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 37888887654
No 205
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.72 E-value=29 Score=21.94 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=24.7
Q ss_pred CCCcccccccccCCCCCeEEcCC---CCccCHHHHHHHh--hcCCCcccccccc
Q 028554 134 EEDTCPICLEEYDTENPKLITKC---EHHFHLSCILEWN--ERSESCPICDQVL 182 (207)
Q Consensus 134 e~~~C~ICle~~~~~~~~~~lpC---~H~Fh~~CI~~Wl--~~~~~CP~Cr~~~ 182 (207)
+...| ||..... +.-+.--.| ...||..|+.--- ...-.||.|+...
T Consensus 5 ~~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCCC-CCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 34445 6876531 222121233 2689999996211 1123799997643
No 206
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.87 E-value=33 Score=25.73 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=36.6
Q ss_pred CCCCCcccccccccCC-CCCeEEcCCCCccCHHHHHHHhhcCCCccccccccccc
Q 028554 132 SEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQVLIIL 185 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~-~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~Cr~~~~~~ 185 (207)
-.+=..|..|...+.. +.. ....=+..||..|..+-+..+..|..|.+.|...
T Consensus 29 H~~CF~C~~C~~~L~~~g~~-~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 29 HSRCLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp CGGGCBCTTTCCBHHHHCSE-EEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred cccCcccCCCCcccccCCce-EEEeCCccccccccccccccCCccccCCCccccC
Confidence 3466789999887733 223 3345577899999877655444799999988753
No 207
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.85 E-value=59 Score=18.15 Aligned_cols=15 Identities=13% Similarity=0.496 Sum_probs=11.3
Q ss_pred Ccccccccccccchh
Q 028554 174 SCPICDQVLIILKDA 188 (207)
Q Consensus 174 ~CP~Cr~~~~~~~~~ 188 (207)
.||.|++.|..++.+
T Consensus 11 ~C~~C~~~i~~~~~~ 25 (39)
T 2i5o_A 11 PCEKCGSLVPVWDMP 25 (39)
T ss_dssp ECTTTCCEEEGGGHH
T ss_pred ccccccCcCCccccc
Confidence 799999988765443
No 208
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.12 E-value=86 Score=20.29 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCCCcccccccccCC--CCCeEEcCCCCccCHHH
Q 028554 132 SEEEDTCPICLEEYDT--ENPKLITKCEHHFHLSC 164 (207)
Q Consensus 132 ~ee~~~C~ICle~~~~--~~~~~~lpC~H~Fh~~C 164 (207)
...+..|+.|++.|.- .....-..|.|..|..|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 4567789999999832 22334567888888887
Done!