BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028556
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|B Chain B, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|C Chain C, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|D Chain D, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
Length = 108
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 12 TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF 65
T YG C+ + +DC+ C+ + VN+I +C GA +QL C+++YE F
Sbjct: 55 TAYGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 88 FFKRRDDVLADLQTAVSF-----KVSSSG-----FVEGFAQCLGDLTPADCTTCLAEAIA 137
F + +LADL+ +F K S +G G A C ++ +DCT CL+ +
Sbjct: 21 FNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80
Query: 138 KLKNLCGSAPAADVFLAQCYARY 160
++ ++C +A A V L C+ +Y
Sbjct: 81 RIFSICNNAIGARVQLVDCFIQY 103
>pdb|1SNT|A Chain A, Structure Of The Human Cytosolic Sialidase Neu2
pdb|1SO7|A Chain A, Maltose-Induced Structure Of The Human Cytolsolic
Sialidase Neu2
pdb|1VCU|A Chain A, Structure Of The Human Cytosolic Sialidase Neu2 In Complex
With The Inhibitor Dana
pdb|1VCU|B Chain B, Structure Of The Human Cytosolic Sialidase Neu2 In Complex
With The Inhibitor Dana
pdb|2F0Z|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Zanamivir Inhibitor
pdb|2F10|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Peramivir Inhibitor
pdb|2F11|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With Isobutyl Ether Mimetic Inhibitor
pdb|2F12|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With 3- Hydroxypropyl Ether Mimetic Inhibitor
pdb|2F13|A Chain A, Crystal Structure Of The Human Sialidase Neu2 In Complex
With 2',3'- Dihydroxypropyl Ether Mimetic Inhibitor
Length = 382
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 110 SGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLT 169
S F G CL A A A KL + P+A FL+ + R WA G++
Sbjct: 157 STFAVGPGHCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQ 216
Query: 170 DS 171
D+
Sbjct: 217 DT 218
>pdb|2F26|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant
pdb|2F27|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant In Complex With Dana Inhibitor
pdb|2F27|B Chain B, Crystal Structure Of The Human Sialidase Neu2 E111q-Q112e
Double Mutant In Complex With Dana Inhibitor
Length = 382
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 110 SGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLT 169
S F G CL A A A KL + P+A FL+ + R WA G++
Sbjct: 157 STFAVGPGHCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQ 216
Query: 170 DS 171
D+
Sbjct: 217 DT 218
>pdb|2F24|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q Mutant
pdb|2F25|A Chain A, Crystal Structure Of The Human Sialidase Neu2 E111q Mutant
In Complex With Dana Inhibitor
pdb|2F25|B Chain B, Crystal Structure Of The Human Sialidase Neu2 E111q Mutant
In Complex With Dana Inhibitor
Length = 382
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 110 SGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLT 169
S F G CL A A A KL + P+A FL+ + R WA G++
Sbjct: 157 STFAVGPGHCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQ 216
Query: 170 DS 171
D+
Sbjct: 217 DT 218
>pdb|2F28|A Chain A, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
pdb|2F29|A Chain A, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
In Complex With Dana Inhibitor
pdb|2F29|B Chain B, Crystal Structure Of The Human Sialidase Neu2 Q116e Mutant
In Complex With Dana Inhibitor
Length = 382
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 110 SGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLT 169
S F G CL A A A KL + P+A FL+ + R WA G++
Sbjct: 157 STFAVGPGHCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQ 216
Query: 170 DS 171
D+
Sbjct: 217 DT 218
>pdb|3ZC1|A Chain A, Crystal Structure Of Afc3po
pdb|3ZC1|B Chain B, Crystal Structure Of Afc3po
pdb|3ZC1|C Chain C, Crystal Structure Of Afc3po
pdb|3ZC1|D Chain D, Crystal Structure Of Afc3po
pdb|3ZC1|E Chain E, Crystal Structure Of Afc3po
pdb|3ZC1|F Chain F, Crystal Structure Of Afc3po
pdb|3ZC1|G Chain G, Crystal Structure Of Afc3po
pdb|3ZC1|H Chain H, Crystal Structure Of Afc3po
Length = 199
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 72 SIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTC 131
I++ C+ ++ VE ++ + + + +V+ + F+ GFA +G+L T
Sbjct: 71 EIYFYLCNDAMQELVEAIAFKNAISGEFTFEIDLEVTPAAFLNGFADAVGELRRYALTKL 130
Query: 132 L 132
+
Sbjct: 131 I 131
>pdb|3ZC0|A Chain A, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|B Chain B, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|C Chain C, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|D Chain D, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|E Chain E, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|F Chain F, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|G Chain G, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|H Chain H, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|I Chain I, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|J Chain J, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|K Chain K, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|L Chain L, Structure Of Afc3po - Duplex Rna Complex
Length = 199
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 72 SIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTC 131
I++ C+ ++ VE ++ + + + +V+ + F+ GFA +G+L T
Sbjct: 71 EIYFYLCNDAMQELVEAIAFKNAISGEFTFEIDLEVTPAAFLNGFAAAVGELRRYALTKL 130
Query: 132 L 132
+
Sbjct: 131 I 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,700,531
Number of Sequences: 62578
Number of extensions: 199231
Number of successful extensions: 405
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 11
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)