Query 028556
Match_columns 207
No_of_seqs 143 out of 1386
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 6.8E-23 1.5E-27 150.1 8.2 82 84-165 15-106 (106)
2 PF01657 Stress-antifung: Salt 99.7 1.1E-18 2.4E-23 127.7 3.8 62 4-65 45-106 (106)
3 PF01102 Glycophorin_A: Glycop 96.0 0.0021 4.5E-08 48.1 0.2 32 176-207 62-94 (122)
4 PF08693 SKG6: Transmembrane a 94.7 0.029 6.3E-07 33.5 2.3 25 182-207 16-40 (40)
5 PTZ00382 Variant-specific surf 93.9 0.042 9.2E-07 39.3 2.2 25 176-200 64-88 (96)
6 PF14610 DUF4448: Protein of u 91.4 0.14 3.1E-06 40.9 2.3 28 180-207 159-186 (189)
7 PF01034 Syndecan: Syndecan do 90.8 0.073 1.6E-06 35.0 0.1 29 179-207 10-39 (64)
8 PF02439 Adeno_E3_CR2: Adenovi 90.1 0.25 5.4E-06 29.0 1.9 21 179-199 4-24 (38)
9 PF15102 TMEM154: TMEM154 prot 89.2 0.24 5.2E-06 38.0 1.8 10 180-189 58-67 (146)
10 PHA03265 envelope glycoprotein 85.4 1.1 2.4E-05 39.2 3.9 28 179-206 348-376 (402)
11 PF15012 DUF4519: Domain of un 83.5 0.4 8.7E-06 30.7 0.3 27 178-204 28-54 (56)
12 PF12669 P12: Virus attachment 83.0 1.9 4E-05 27.9 3.3 7 183-189 2-8 (58)
13 PF04478 Mid2: Mid2 like cell 82.5 0.69 1.5E-05 35.8 1.3 20 180-199 51-70 (154)
14 PF01299 Lamp: Lysosome-associ 77.9 1.1 2.4E-05 38.6 1.2 24 178-201 270-293 (306)
15 PF02009 Rifin_STEVOR: Rifin/s 77.0 0.78 1.7E-05 39.5 0.0 8 199-206 277-284 (299)
16 PF05454 DAG1: Dystroglycan (D 75.5 0.9 2E-05 39.0 0.0 10 112-121 101-110 (290)
17 PF08693 SKG6: Transmembrane a 74.5 2.4 5.2E-05 25.3 1.6 27 176-202 6-32 (40)
18 PF11857 DUF3377: Domain of un 73.9 4.5 9.8E-05 27.4 3.1 23 177-199 28-50 (74)
19 TIGR01478 STEVOR variant surfa 69.8 1.9 4E-05 36.8 0.6 15 155-169 213-227 (295)
20 PF08374 Protocadherin: Protoc 68.6 7.9 0.00017 31.7 3.9 13 179-191 39-51 (221)
21 PF05808 Podoplanin: Podoplani 68.5 1.6 3.5E-05 34.0 0.0 28 177-204 128-156 (162)
22 PTZ00370 STEVOR; Provisional 68.4 2.1 4.4E-05 36.6 0.6 10 198-207 275-284 (296)
23 PF03302 VSP: Giardia variant- 67.1 5.4 0.00012 35.8 3.0 25 176-200 365-389 (397)
24 PF13908 Shisa: Wnt and FGF in 66.8 5.3 0.00011 31.5 2.6 7 154-160 31-37 (179)
25 PF01034 Syndecan: Syndecan do 64.6 1.9 4E-05 28.4 -0.3 29 177-205 12-40 (64)
26 TIGR01167 LPXTG_anchor LPXTG-m 64.4 7.1 0.00015 21.7 2.2 14 193-206 20-33 (34)
27 PF12768 Rax2: Cortical protei 63.8 19 0.00041 30.8 5.6 17 178-194 227-243 (281)
28 PLN03150 hypothetical protein; 60.4 8.7 0.00019 36.4 3.2 28 179-206 545-572 (623)
29 PF12301 CD99L2: CD99 antigen 60.3 8.8 0.00019 30.3 2.7 25 183-207 116-142 (169)
30 PF08114 PMP1_2: ATPase proteo 56.2 19 0.00042 21.5 3.0 6 178-183 9-14 (43)
31 KOG1226 Integrin beta subunit 56.1 14 0.0003 35.7 3.7 28 177-204 710-737 (783)
32 PTZ00046 rifin; Provisional 55.8 9.8 0.00021 33.6 2.5 10 198-207 335-344 (358)
33 TIGR01477 RIFIN variant surfac 55.5 10 0.00022 33.5 2.5 10 198-207 330-339 (353)
34 PF15176 LRR19-TM: Leucine-ric 54.1 15 0.00033 26.4 2.8 21 175-195 11-31 (102)
35 PF12877 DUF3827: Domain of un 52.8 30 0.00065 33.0 5.3 22 113-134 211-232 (684)
36 KOG3637 Vitronectin receptor, 52.4 14 0.0003 37.4 3.2 24 180-203 978-1001(1030)
37 PF12768 Rax2: Cortical protei 52.0 8.7 0.00019 32.8 1.6 29 178-206 231-259 (281)
38 PF11884 DUF3404: Domain of un 50.5 5.9 0.00013 33.5 0.3 13 153-165 210-222 (262)
39 PF13908 Shisa: Wnt and FGF in 48.9 8.5 0.00018 30.3 1.0 10 180-189 77-86 (179)
40 PF05624 LSR: Lipolysis stimul 48.3 41 0.00088 20.7 3.6 19 184-202 5-23 (49)
41 PF15345 TMEM51: Transmembrane 47.9 22 0.00048 29.4 3.3 23 180-203 59-81 (233)
42 PF13940 Ldr_toxin: Toxin Ldr, 46.5 21 0.00045 20.4 2.0 20 185-205 16-35 (35)
43 PF04478 Mid2: Mid2 like cell 45.5 4 8.8E-05 31.6 -1.3 28 178-206 53-80 (154)
44 PF10873 DUF2668: Protein of u 43.6 39 0.00084 26.0 3.7 13 179-191 62-74 (155)
45 COG3763 Uncharacterized protei 41.8 9.2 0.0002 25.6 0.2 7 200-206 24-30 (71)
46 PRK00523 hypothetical protein; 41.7 9.3 0.0002 25.8 0.2 7 200-206 25-31 (72)
47 PF12877 DUF3827: Domain of un 41.5 22 0.00048 33.8 2.6 17 12-28 79-95 (684)
48 PRK01844 hypothetical protein; 41.2 17 0.00038 24.5 1.4 24 183-206 7-30 (72)
49 PF04689 S1FA: DNA binding pro 40.6 59 0.0013 21.4 3.7 19 176-194 11-29 (69)
50 KOG3653 Transforming growth fa 38.2 54 0.0012 30.3 4.4 13 154-166 123-135 (534)
51 PF02480 Herpes_gE: Alphaherpe 38.2 11 0.00023 34.4 0.0 12 117-128 239-250 (439)
52 PF05083 LST1: LST-1 protein; 36.9 43 0.00094 22.4 2.7 18 189-206 7-24 (74)
53 PF13955 Fst_toxin: Toxin Fst, 36.7 17 0.00037 18.5 0.6 12 183-194 4-15 (21)
54 TIGR02976 phageshock_pspB phag 35.6 29 0.00063 23.6 1.8 21 184-204 7-27 (75)
55 COG3765 WzzB Chain length dete 35.5 19 0.00042 31.6 1.2 34 158-191 294-328 (347)
56 PRK11638 lipopolysaccharide bi 34.0 8.2 0.00018 33.9 -1.4 46 159-205 295-341 (342)
57 PF14991 MLANA: Protein melan- 33.1 8.2 0.00018 28.4 -1.2 10 195-204 41-50 (118)
58 KOG3488 Dolichol phosphate-man 32.3 35 0.00076 22.9 1.7 15 180-194 47-61 (81)
59 PF03229 Alpha_GJ: Alphavirus 32.3 59 0.0013 24.1 3.1 30 176-205 81-111 (126)
60 PF14986 DUF4514: Domain of un 30.9 50 0.0011 21.0 2.2 22 183-204 27-48 (61)
61 COG3197 FixS Uncharacterized p 30.3 81 0.0018 20.3 3.1 24 180-204 3-26 (58)
62 PF05393 Hum_adeno_E3A: Human 28.8 57 0.0012 22.9 2.4 11 181-191 33-43 (94)
63 PF08374 Protocadherin: Protoc 28.8 29 0.00063 28.5 1.1 22 178-199 34-55 (221)
64 PF07297 DPM2: Dolichol phosph 27.1 32 0.00069 23.6 0.9 13 180-192 45-57 (78)
65 PF15431 TMEM190: Transmembran 27.1 70 0.0015 23.5 2.7 18 189-206 69-86 (134)
66 PF06365 CD34_antigen: CD34/Po 26.7 1E+02 0.0022 25.1 3.9 6 180-185 102-107 (202)
67 PF07204 Orthoreo_P10: Orthore 26.0 46 0.00099 23.7 1.5 11 181-191 45-55 (98)
68 PF06697 DUF1191: Protein of u 25.7 62 0.0013 27.7 2.6 7 180-186 212-218 (278)
69 PF07010 Endomucin: Endomucin; 25.5 46 0.001 27.6 1.7 10 197-206 207-216 (259)
70 PTZ00045 apical membrane antig 25.1 67 0.0014 30.3 2.8 17 178-194 513-529 (595)
71 PF05454 DAG1: Dystroglycan (D 24.4 25 0.00054 30.2 0.0 25 182-206 152-176 (290)
72 PF07438 DUF1514: Protein of u 24.1 73 0.0016 21.0 2.1 14 183-196 3-16 (66)
73 PRK15471 chain length determin 23.4 53 0.0011 28.7 1.8 33 175-207 290-325 (325)
74 PF01102 Glycophorin_A: Glycop 23.3 68 0.0015 23.9 2.1 27 178-204 68-94 (122)
75 PRK10381 LPS O-antigen length 23.3 43 0.00093 29.8 1.3 35 158-192 316-351 (377)
76 PF10577 UPF0560: Uncharacteri 23.1 66 0.0014 31.5 2.5 19 143-161 214-232 (807)
77 PF00944 Peptidase_S3: Alphavi 22.1 60 0.0013 24.9 1.6 30 157-186 88-125 (158)
78 PF06682 DUF1183: Protein of u 21.9 1.5E+02 0.0032 25.9 4.2 16 148-163 108-123 (318)
79 PF02480 Herpes_gE: Alphaherpe 21.7 31 0.00066 31.5 0.0 9 181-189 355-363 (439)
80 PF05084 GRA6: Granule antigen 21.6 80 0.0017 24.9 2.3 20 187-206 157-176 (215)
81 COG4736 CcoQ Cbb3-type cytochr 21.4 1E+02 0.0022 20.0 2.4 11 193-203 21-31 (60)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.88 E-value=6.8e-23 Score=150.13 Aligned_cols=82 Identities=30% Similarity=0.677 Sum_probs=65.4
Q ss_pred CcHHHHHHHHHHHHHHHHhh------ccccc----CCcceEEEEeccCCCChhhHHHHHHHHHHHHHhhcCCCcccEEEc
Q 028556 84 NDVEFFKRRDDVLADLQTAV------SFKVS----SSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFL 153 (207)
Q Consensus 84 ~~~~~~~~~~~ll~~l~~~a------~f~~~----~~~~vYgLaQC~~DLs~~~C~~CL~~a~~~~~~~c~~~~gg~i~~ 153 (207)
.+..|..++..+|..|...+ +|+++ +..+||||+||++||++.+|..||+.++.+++++|+.++||+|++
T Consensus 15 ~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~ 94 (106)
T PF01657_consen 15 DNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWY 94 (106)
T ss_dssp TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEEC
Confidence 34556677899998886543 46554 356999999999999999999999999999999999999999999
Q ss_pred CceeEEEeccCC
Q 028556 154 AQCYARYWASGY 165 (207)
Q Consensus 154 ~~C~lRYe~~~F 165 (207)
++|+||||+|+|
T Consensus 95 ~~C~lRY~~~~F 106 (106)
T PF01657_consen 95 DSCFLRYENYPF 106 (106)
T ss_dssp SSEEEEEESS--
T ss_pred CCEEEEEECCCC
Confidence 999999999998
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.74 E-value=1.1e-18 Score=127.71 Aligned_cols=62 Identities=44% Similarity=0.912 Sum_probs=51.0
Q ss_pred CCCCCCCCcEEEEEeccCCCChhchHHHHHHHHHHHhhhCCCCcceEEEcceeEEEEEeeee
Q 028556 4 GTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF 65 (207)
Q Consensus 4 ~~~~~~~~~vygl~qCr~D~~~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lrys~~~f 65 (207)
|+.|.+.+++|||+||++|+++++|..||+.|..++++.|+..++++||++.|+|||++++|
T Consensus 45 ~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 45 GSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp EE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred eecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence 44567788999999999999999999999999999999999999999999999999999987
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=95.96 E-value=0.0021 Score=48.06 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=21.6
Q ss_pred CCCcEEEEeeHHHHHHHHHHHHHHH-HHHhhcC
Q 028556 176 QVGKTVAIIVGVVAGLAILIVFLSI-CRRAMER 207 (207)
Q Consensus 176 ~~~~~~~iv~~~v~~~~~~~~~~~~-~~~~~~~ 207 (207)
..+.++.|++|++++++++++++.| +||++||
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456778999999998777766655 5666665
No 4
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=94.72 E-value=0.029 Score=33.47 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=11.4
Q ss_pred EEeeHHHHHHHHHHHHHHHHHHhhcC
Q 028556 182 AIIVGVVAGLAILIVFLSICRRAMER 207 (207)
Q Consensus 182 ~iv~~~v~~~~~~~~~~~~~~~~~~~ 207 (207)
++++|+++-+ ++++++.|+|||++|
T Consensus 16 ~VvVPV~vI~-~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 16 GVVVPVGVII-IVLGAFLFFWYRRKK 40 (40)
T ss_pred EEEechHHHH-HHHHHHhheEEeccC
Confidence 4455544422 333334444565554
No 5
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=93.90 E-value=0.042 Score=39.33 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=15.9
Q ss_pred CCCcEEEEeeHHHHHHHHHHHHHHH
Q 028556 176 QVGKTVAIIVGVVAGLAILIVFLSI 200 (207)
Q Consensus 176 ~~~~~~~iv~~~v~~~~~~~~~~~~ 200 (207)
+++.|..|++++++.+..++.+++|
T Consensus 64 s~gaiagi~vg~~~~v~~lv~~l~w 88 (96)
T PTZ00382 64 STGAIAGISVAVVAVVGGLVGFLCW 88 (96)
T ss_pred ccccEEEEEeehhhHHHHHHHHHhh
Confidence 4567888999877665444444443
No 6
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=91.41 E-value=0.14 Score=40.95 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=20.5
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHHhhcC
Q 028556 180 TVAIIVGVVAGLAILIVFLSICRRAMER 207 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~~~~~~~~ 207 (207)
.++|++|+++++++++++..++|+|++|
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFWNRKKR 186 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhheeeccce
Confidence 7899999998776666666666666553
No 7
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=90.76 E-value=0.073 Score=35.01 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=0.4
Q ss_pred cEEEEeeHHHHHHHHHHHHHHH-HHHhhcC
Q 028556 179 KTVAIIVGVVAGLAILIVFLSI-CRRAMER 207 (207)
Q Consensus 179 ~~~~iv~~~v~~~~~~~~~~~~-~~~~~~~ 207 (207)
...++|+|+|++++++++++.| +.|.+||
T Consensus 10 vlaavIaG~Vvgll~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILFLIYRMRKK 39 (64)
T ss_dssp ---------------------------S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666665544443433 3444443
No 8
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=90.08 E-value=0.25 Score=29.03 Aligned_cols=21 Identities=52% Similarity=0.822 Sum_probs=14.5
Q ss_pred cEEEEeeHHHHHHHHHHHHHH
Q 028556 179 KTVAIIVGVVAGLAILIVFLS 199 (207)
Q Consensus 179 ~~~~iv~~~v~~~~~~~~~~~ 199 (207)
.+++|+++++++++++++...
T Consensus 4 s~IaIIv~V~vg~~iiii~~~ 24 (38)
T PF02439_consen 4 STIAIIVAVVVGMAIIIICMF 24 (38)
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 467888888887766655443
No 9
>PF15102 TMEM154: TMEM154 protein family
Probab=89.22 E-value=0.24 Score=38.04 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=6.7
Q ss_pred EEEEeeHHHH
Q 028556 180 TVAIIVGVVA 189 (207)
Q Consensus 180 ~~~iv~~~v~ 189 (207)
++.|++|.|+
T Consensus 58 iLmIlIP~VL 67 (146)
T PF15102_consen 58 ILMILIPLVL 67 (146)
T ss_pred EEEEeHHHHH
Confidence 6777888443
No 10
>PHA03265 envelope glycoprotein D; Provisional
Probab=85.40 E-value=1.1 Score=39.18 Aligned_cols=28 Identities=39% Similarity=0.593 Sum_probs=19.3
Q ss_pred cEEEEeeH-HHHHHHHHHHHHHHHHHhhc
Q 028556 179 KTVAIIVG-VVAGLAILIVFLSICRRAME 206 (207)
Q Consensus 179 ~~~~iv~~-~v~~~~~~~~~~~~~~~~~~ 206 (207)
..+.|++| .|++++++-+++.++|||+|
T Consensus 348 ~~~g~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 348 TFVGISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred cccceEEccchhhhhhhhHHHHHHhhhhh
Confidence 34555544 56677777777888888876
No 11
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=83.49 E-value=0.4 Score=30.65 Aligned_cols=27 Identities=15% Similarity=0.328 Sum_probs=20.0
Q ss_pred CcEEEEeeHHHHHHHHHHHHHHHHHHh
Q 028556 178 GKTVAIIVGVVAGLAILIVFLSICRRA 204 (207)
Q Consensus 178 ~~~~~iv~~~v~~~~~~~~~~~~~~~~ 204 (207)
.++.-||+|++++++++++++.|+..|
T Consensus 28 ~kv~tVVlP~l~~~~~~Ivv~vy~kTR 54 (56)
T PF15012_consen 28 QKVFTVVLPTLAAVFLFIVVFVYLKTR 54 (56)
T ss_pred HhheeEehhHHHHHHHHHhheeEEecc
Confidence 346788999999887777777666554
No 12
>PF12669 P12: Virus attachment protein p12 family
Probab=83.05 E-value=1.9 Score=27.89 Aligned_cols=7 Identities=43% Similarity=1.099 Sum_probs=2.9
Q ss_pred EeeHHHH
Q 028556 183 IIVGVVA 189 (207)
Q Consensus 183 iv~~~v~ 189 (207)
|++++++
T Consensus 2 iII~~Ii 8 (58)
T PF12669_consen 2 IIIGIII 8 (58)
T ss_pred eeHHHHH
Confidence 3444433
No 13
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=82.47 E-value=0.69 Score=35.82 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=11.3
Q ss_pred EEEEeeHHHHHHHHHHHHHH
Q 028556 180 TVAIIVGVVAGLAILIVFLS 199 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~ 199 (207)
+|.+||||-++++++++++.
T Consensus 51 VIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALV 70 (154)
T ss_pred EEEEEecccHHHHHHHHHhh
Confidence 56778886555544444343
No 14
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=77.91 E-value=1.1 Score=38.57 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=14.8
Q ss_pred CcEEEEeeHHHHHHHHHHHHHHHH
Q 028556 178 GKTVAIIVGVVAGLAILIVFLSIC 201 (207)
Q Consensus 178 ~~~~~iv~~~v~~~~~~~~~~~~~ 201 (207)
..++.|+||++++++++++++.|+
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYl 293 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYL 293 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhe
Confidence 567778888766554555555544
No 15
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=76.95 E-value=0.78 Score=39.53 Aligned_cols=8 Identities=25% Similarity=0.094 Sum_probs=3.5
Q ss_pred HHHHHhhc
Q 028556 199 SICRRAME 206 (207)
Q Consensus 199 ~~~~~~~~ 206 (207)
..+|.|+|
T Consensus 277 LILRYRRK 284 (299)
T PF02009_consen 277 LILRYRRK 284 (299)
T ss_pred HHHHHHHH
Confidence 33444443
No 16
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=75.46 E-value=0.9 Score=38.97 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred ceEEEEeccC
Q 028556 112 FVEGFAQCLG 121 (207)
Q Consensus 112 ~vYgLaQC~~ 121 (207)
++.++.+|..
T Consensus 101 sv~~~G~C~~ 110 (290)
T PF05454_consen 101 SVIPIGSCQD 110 (290)
T ss_dssp ----------
T ss_pred EEEEeeccCC
Confidence 6778877764
No 17
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=74.53 E-value=2.4 Score=25.29 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=21.6
Q ss_pred CCCcEEEEeeHHHHHHHHHHHHHHHHH
Q 028556 176 QVGKTVAIIVGVVAGLAILIVFLSICR 202 (207)
Q Consensus 176 ~~~~~~~iv~~~v~~~~~~~~~~~~~~ 202 (207)
+..+..+|.+++++.++++++++.++-
T Consensus 6 ~~~~~vaIa~~VvVPV~vI~~vl~~~l 32 (40)
T PF08693_consen 6 SNSNTVAIAVGVVVPVGVIIIVLGAFL 32 (40)
T ss_pred CCCceEEEEEEEEechHHHHHHHHHHh
Confidence 345688999999999988888887764
No 18
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=73.89 E-value=4.5 Score=27.40 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=15.7
Q ss_pred CCcEEEEeeHHHHHHHHHHHHHH
Q 028556 177 VGKTVAIIVGVVAGLAILIVFLS 199 (207)
Q Consensus 177 ~~~~~~iv~~~v~~~~~~~~~~~ 199 (207)
+-++++|++|.++.+.++.+++.
T Consensus 28 ~~~avaVviPl~L~LCiLvl~ya 50 (74)
T PF11857_consen 28 TVNAVAVVIPLVLLLCILVLIYA 50 (74)
T ss_pred ceeEEEEeHHHHHHHHHHHHHHH
Confidence 34578899998877666655444
No 19
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=69.79 E-value=1.9 Score=36.80 Aligned_cols=15 Identities=7% Similarity=0.239 Sum_probs=7.6
Q ss_pred ceeEEEeccCCCCCC
Q 028556 155 QCYARYWASGYYDLT 169 (207)
Q Consensus 155 ~C~lRYe~~~F~~~~ 169 (207)
.|.--.....+|+.+
T Consensus 213 ~C~SSIsIfNMF~~s 227 (295)
T TIGR01478 213 KCTKALAGINFFFSS 227 (295)
T ss_pred hhhhhhhhhcccChH
Confidence 455444555555433
No 20
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=68.58 E-value=7.9 Score=31.71 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=7.7
Q ss_pred cEEEEeeHHHHHH
Q 028556 179 KTVAIIVGVVAGL 191 (207)
Q Consensus 179 ~~~~iv~~~v~~~ 191 (207)
.+++||.|++.++
T Consensus 39 I~iaiVAG~~tVI 51 (221)
T PF08374_consen 39 IMIAIVAGIMTVI 51 (221)
T ss_pred eeeeeecchhhhH
Confidence 3456777766544
No 21
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=68.45 E-value=1.6 Score=34.04 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCcEEEEeeHHHHHHHHHHHHH-HHHHHh
Q 028556 177 VGKTVAIIVGVVAGLAILIVFL-SICRRA 204 (207)
Q Consensus 177 ~~~~~~iv~~~v~~~~~~~~~~-~~~~~~ 204 (207)
++.++.||+|+++++.++.-++ .+.||.
T Consensus 128 T~tLVGIIVGVLlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 128 TVTLVGIIVGVLLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp -----------------------------
T ss_pred eeeeeeehhhHHHHHHHHhheeeEEeehh
Confidence 3456789999998877665444 445654
No 22
>PTZ00370 STEVOR; Provisional
Probab=68.43 E-value=2.1 Score=36.60 Aligned_cols=10 Identities=10% Similarity=-0.097 Sum_probs=5.0
Q ss_pred HHHHHHhhcC
Q 028556 198 LSICRRAMER 207 (207)
Q Consensus 198 ~~~~~~~~~~ 207 (207)
+.|+.||+|+
T Consensus 275 YiwlyrrRK~ 284 (296)
T PTZ00370 275 YIWLYRRRKN 284 (296)
T ss_pred HHHHHHhhcc
Confidence 3455555553
No 23
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=67.13 E-value=5.4 Score=35.77 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=14.4
Q ss_pred CCCcEEEEeeHHHHHHHHHHHHHHH
Q 028556 176 QVGKTVAIIVGVVAGLAILIVFLSI 200 (207)
Q Consensus 176 ~~~~~~~iv~~~v~~~~~~~~~~~~ 200 (207)
++|-|..|.|++|++|.-|+-||+|
T Consensus 365 stgaIaGIsvavvvvVgglvGfLcW 389 (397)
T PF03302_consen 365 STGAIAGISVAVVVVVGGLVGFLCW 389 (397)
T ss_pred cccceeeeeehhHHHHHHHHHHHhh
Confidence 3455777888876655444434443
No 24
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=66.76 E-value=5.3 Score=31.51 Aligned_cols=7 Identities=43% Similarity=1.018 Sum_probs=3.8
Q ss_pred CceeEEE
Q 028556 154 AQCYARY 160 (207)
Q Consensus 154 ~~C~lRY 160 (207)
.+|.+||
T Consensus 31 G~C~~ry 37 (179)
T PF13908_consen 31 GTCSLRY 37 (179)
T ss_pred CCccCcc
Confidence 3555555
No 25
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=64.64 E-value=1.9 Score=28.45 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=0.7
Q ss_pred CCcEEEEeeHHHHHHHHHHHHHHHHHHhh
Q 028556 177 VGKTVAIIVGVVAGLAILIVFLSICRRAM 205 (207)
Q Consensus 177 ~~~~~~iv~~~v~~~~~~~~~~~~~~~~~ 205 (207)
.+.+..+|++++.+++++++++..+|++-
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp -------------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566788888888878777787777653
No 26
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=64.38 E-value=7.1 Score=21.70 Aligned_cols=14 Identities=14% Similarity=0.009 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhhc
Q 028556 193 ILIVFLSICRRAME 206 (207)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (207)
++++...+++|++|
T Consensus 20 l~~~~~~~~~~rk~ 33 (34)
T TIGR01167 20 LLGLGGLLLRKRKK 33 (34)
T ss_pred HHHHHHHHheeccc
Confidence 33333344455544
No 27
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=63.78 E-value=19 Score=30.80 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=9.0
Q ss_pred CcEEEEeeHHHHHHHHH
Q 028556 178 GKTVAIIVGVVAGLAIL 194 (207)
Q Consensus 178 ~~~~~iv~~~v~~~~~~ 194 (207)
|.++.|.+++.++++++
T Consensus 227 G~VVlIslAiALG~v~l 243 (281)
T PF12768_consen 227 GFVVLISLAIALGTVFL 243 (281)
T ss_pred eEEEEEehHHHHHHHHH
Confidence 44566666655554333
No 28
>PLN03150 hypothetical protein; Provisional
Probab=60.42 E-value=8.7 Score=36.44 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=15.8
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHHHhhc
Q 028556 179 KTVAIIVGVVAGLAILIVFLSICRRAME 206 (207)
Q Consensus 179 ~~~~iv~~~v~~~~~~~~~~~~~~~~~~ 206 (207)
.++.|+++++++++++++.+.++|++++
T Consensus 545 ~~i~~~~~~~~~~l~~~~~~~~~~~~r~ 572 (623)
T PLN03150 545 AKIGIAFGVSVAFLFLVICAMCWWKRRQ 572 (623)
T ss_pred eEEEEEhHHHHHHHHHHHHHhhheeehh
Confidence 3566677766655455544555555544
No 29
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=60.25 E-value=8.8 Score=30.32 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=13.3
Q ss_pred EeeHHHHHH--HHHHHHHHHHHHhhcC
Q 028556 183 IIVGVVAGL--AILIVFLSICRRAMER 207 (207)
Q Consensus 183 iv~~~v~~~--~~~~~~~~~~~~~~~~ 207 (207)
+|.|||.+| +++-++..|+-.++||
T Consensus 116 ~IaGIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 116 TIAGIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444333 2344456677777776
No 30
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=56.20 E-value=19 Score=21.50 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.4
Q ss_pred CcEEEE
Q 028556 178 GKTVAI 183 (207)
Q Consensus 178 ~~~~~i 183 (207)
|.++.+
T Consensus 9 GVIlVF 14 (43)
T PF08114_consen 9 GVILVF 14 (43)
T ss_pred Ceeeeh
Confidence 334443
No 31
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=56.12 E-value=14 Score=35.72 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=22.1
Q ss_pred CCcEEEEeeHHHHHHHHHHHHHHHHHHh
Q 028556 177 VGKTVAIIVGVVAGLAILIVFLSICRRA 204 (207)
Q Consensus 177 ~~~~~~iv~~~v~~~~~~~~~~~~~~~~ 204 (207)
.-.+++|++++|++++++.+++..+|+.
T Consensus 710 ~~~~~~i~lgvv~~ivligl~llliwkl 737 (783)
T KOG1226|consen 710 GPNILAIVLGVVAGIVLIGLALLLIWKL 737 (783)
T ss_pred CCcEeeehHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999888887777777764
No 32
>PTZ00046 rifin; Provisional
Probab=55.80 E-value=9.8 Score=33.63 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=5.8
Q ss_pred HHHHHHhhcC
Q 028556 198 LSICRRAMER 207 (207)
Q Consensus 198 ~~~~~~~~~~ 207 (207)
+..+|.|+||
T Consensus 335 YLILRYRRKK 344 (358)
T PTZ00046 335 YLILRYRRKK 344 (358)
T ss_pred HHHHHhhhcc
Confidence 3456766665
No 33
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=55.48 E-value=10 Score=33.49 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=5.8
Q ss_pred HHHHHHhhcC
Q 028556 198 LSICRRAMER 207 (207)
Q Consensus 198 ~~~~~~~~~~ 207 (207)
+..+|.|+||
T Consensus 330 YLILRYRRKK 339 (353)
T TIGR01477 330 YLILRYRRKK 339 (353)
T ss_pred HHHHHhhhcc
Confidence 3456666665
No 34
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=54.07 E-value=15 Score=26.40 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=13.6
Q ss_pred CCCCcEEEEeeHHHHHHHHHH
Q 028556 175 DQVGKTVAIIVGVVAGLAILI 195 (207)
Q Consensus 175 ~~~~~~~~iv~~~v~~~~~~~ 195 (207)
...++.++..+|+|++++++-
T Consensus 11 ~~~g~sW~~LVGVv~~al~~S 31 (102)
T PF15176_consen 11 GEGGRSWPFLVGVVVTALVTS 31 (102)
T ss_pred CCCCcccHhHHHHHHHHHHHH
Confidence 345788888888776554443
No 35
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=52.83 E-value=30 Score=32.96 Aligned_cols=22 Identities=14% Similarity=-0.185 Sum_probs=11.3
Q ss_pred eEEEEeccCCCChhhHHHHHHH
Q 028556 113 VEGFAQCLGDLTPADCTTCLAE 134 (207)
Q Consensus 113 vYgLaQC~~DLs~~~C~~CL~~ 134 (207)
-|...+=-.-|...+...=|..
T Consensus 211 YyV~~~~G~pl~a~~AA~~Ln~ 232 (684)
T PF12877_consen 211 YYVEGQNGKPLPAVTAAKDLNL 232 (684)
T ss_pred EEEEcCCCcCCcHHHHHHHHhc
Confidence 4444355555666665544433
No 36
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=52.44 E-value=14 Score=37.37 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=16.4
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHH
Q 028556 180 TVAIIVGVVAGLAILIVFLSICRR 203 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~~~~ 203 (207)
++.||++++++++++++++..+||
T Consensus 978 ~wiIi~svl~GLLlL~llv~~LwK 1001 (1030)
T KOG3637|consen 978 LWIIILSVLGGLLLLALLVLLLWK 1001 (1030)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHh
Confidence 567888888887766665554444
No 37
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.95 E-value=8.7 Score=32.82 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=17.4
Q ss_pred CcEEEEeeHHHHHHHHHHHHHHHHHHhhc
Q 028556 178 GKTVAIIVGVVAGLAILIVFLSICRRAME 206 (207)
Q Consensus 178 ~~~~~iv~~~v~~~~~~~~~~~~~~~~~~ 206 (207)
.--++|.+|+++.++++-+++.+++|+++
T Consensus 231 lIslAiALG~v~ll~l~Gii~~~~~r~~~ 259 (281)
T PF12768_consen 231 LISLAIALGTVFLLVLIGIILAYIRRRRQ 259 (281)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34466777766666566555556666643
No 38
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=50.49 E-value=5.9 Score=33.48 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=9.9
Q ss_pred cCceeEEEeccCC
Q 028556 153 LAQCYARYWASGY 165 (207)
Q Consensus 153 ~~~C~lRYe~~~F 165 (207)
+.+|++||.+--+
T Consensus 210 ~~sC~~r~gNlCw 222 (262)
T PF11884_consen 210 GNSCFVRYGNLCW 222 (262)
T ss_pred CCcccceecceee
Confidence 4689999987654
No 39
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=48.93 E-value=8.5 Score=30.32 Aligned_cols=10 Identities=50% Similarity=0.830 Sum_probs=4.3
Q ss_pred EEEEeeHHHH
Q 028556 180 TVAIIVGVVA 189 (207)
Q Consensus 180 ~~~iv~~~v~ 189 (207)
++.|+++|++
T Consensus 77 ~~~iivgvi~ 86 (179)
T PF13908_consen 77 ITGIIVGVIC 86 (179)
T ss_pred eeeeeeehhh
Confidence 3344444433
No 40
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=48.31 E-value=41 Score=20.65 Aligned_cols=19 Identities=26% Similarity=0.733 Sum_probs=8.6
Q ss_pred eeHHHHHHHHHHHHHHHHH
Q 028556 184 IVGVVAGLAILIVFLSICR 202 (207)
Q Consensus 184 v~~~v~~~~~~~~~~~~~~ 202 (207)
|+-|+++.+++++.+...|
T Consensus 5 V~~iilg~~ll~~LigiCw 23 (49)
T PF05624_consen 5 VVLIILGALLLLLLIGICW 23 (49)
T ss_pred EeHHHHHHHHHHHHHHHHH
Confidence 4445554444444444444
No 41
>PF15345 TMEM51: Transmembrane protein 51
Probab=47.93 E-value=22 Score=29.44 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=10.9
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHH
Q 028556 180 TVAIIVGVVAGLAILIVFLSICRR 203 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~~~~ 203 (207)
.+|+|+..+ +++++++-+|..-|
T Consensus 59 SVAyVLVG~-Gv~LLLLSICL~IR 81 (233)
T PF15345_consen 59 SVAYVLVGS-GVALLLLSICLSIR 81 (233)
T ss_pred EEEEehhhH-HHHHHHHHHHHHHH
Confidence 355554433 44455555554433
No 42
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=46.45 E-value=21 Score=20.35 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=10.5
Q ss_pred eHHHHHHHHHHHHHHHHHHhh
Q 028556 185 VGVVAGLAILIVFLSICRRAM 205 (207)
Q Consensus 185 ~~~v~~~~~~~~~~~~~~~~~ 205 (207)
.|+++++ +..++..|.++|+
T Consensus 16 AP~iagI-i~s~iv~w~~~RK 35 (35)
T PF13940_consen 16 APIIAGI-IASLIVGWLRNRK 35 (35)
T ss_pred hHHHHHH-HHHHHHHHHHhcC
Confidence 4555555 3333456666553
No 43
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=45.53 E-value=4 Score=31.62 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=16.9
Q ss_pred CcEEEEeeHHHHHHHHHHHHHHHHHHhhc
Q 028556 178 GKTVAIIVGVVAGLAILIVFLSICRRAME 206 (207)
Q Consensus 178 ~~~~~iv~~~v~~~~~~~~~~~~~~~~~~ 206 (207)
|-++.|-+++++++ +++++++++|+++|
T Consensus 53 GvVVGVGg~ill~i-l~lvf~~c~r~kkt 80 (154)
T PF04478_consen 53 GVVVGVGGPILLGI-LALVFIFCIRRKKT 80 (154)
T ss_pred EEEecccHHHHHHH-HHhheeEEEecccC
Confidence 77777777776654 44445555555544
No 44
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=43.56 E-value=39 Score=26.04 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=8.1
Q ss_pred cEEEEeeHHHHHH
Q 028556 179 KTVAIIVGVVAGL 191 (207)
Q Consensus 179 ~~~~iv~~~v~~~ 191 (207)
-|..||+|+|..+
T Consensus 62 AIaGIVfgiVfim 74 (155)
T PF10873_consen 62 AIAGIVFGIVFIM 74 (155)
T ss_pred eeeeeehhhHHHH
Confidence 3556888876543
No 45
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.83 E-value=9.2 Score=25.63 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=3.3
Q ss_pred HHHHhhc
Q 028556 200 ICRRAME 206 (207)
Q Consensus 200 ~~~~~~~ 206 (207)
+.||..|
T Consensus 24 iark~~~ 30 (71)
T COG3763 24 IARKQMK 30 (71)
T ss_pred HHHHHHH
Confidence 3455544
No 46
>PRK00523 hypothetical protein; Provisional
Probab=41.66 E-value=9.3 Score=25.77 Aligned_cols=7 Identities=0% Similarity=0.510 Sum_probs=3.0
Q ss_pred HHHHhhc
Q 028556 200 ICRRAME 206 (207)
Q Consensus 200 ~~~~~~~ 206 (207)
+.|+..|
T Consensus 25 iark~~~ 31 (72)
T PRK00523 25 VSKKMFK 31 (72)
T ss_pred HHHHHHH
Confidence 3354443
No 47
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=41.52 E-value=22 Score=33.83 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=7.9
Q ss_pred cEEEEEeccCCCChhch
Q 028556 12 TVYGLYQCRGDLKTTDC 28 (207)
Q Consensus 12 ~vygl~qCr~D~~~~~C 28 (207)
-+|+..-=++-++.++=
T Consensus 79 i~~aVr~~~~~LnGt~~ 95 (684)
T PF12877_consen 79 ITYAVRNGSGFLNGTEV 95 (684)
T ss_pred EEEEEecCceeeccHHH
Confidence 34444444444444443
No 48
>PRK01844 hypothetical protein; Provisional
Probab=41.23 E-value=17 Score=24.47 Aligned_cols=24 Identities=42% Similarity=0.419 Sum_probs=9.4
Q ss_pred EeeHHHHHHHHHHHHHHHHHHhhc
Q 028556 183 IIVGVVAGLAILIVFLSICRRAME 206 (207)
Q Consensus 183 iv~~~v~~~~~~~~~~~~~~~~~~ 206 (207)
|++++++.++-++++.++.|+..|
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333333333333454443
No 49
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.61 E-value=59 Score=21.41 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=11.2
Q ss_pred CCCcEEEEeeHHHHHHHHH
Q 028556 176 QVGKTVAIIVGVVAGLAIL 194 (207)
Q Consensus 176 ~~~~~~~iv~~~v~~~~~~ 194 (207)
+-|.|+.|+++-++.++++
T Consensus 11 nPGlIVLlvV~g~ll~flv 29 (69)
T PF04689_consen 11 NPGLIVLLVVAGLLLVFLV 29 (69)
T ss_pred CCCeEEeehHHHHHHHHHH
Confidence 4466777777655544444
No 50
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=38.20 E-value=54 Score=30.34 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=8.6
Q ss_pred CceeEEEeccCCC
Q 028556 154 AQCYARYWASGYY 166 (207)
Q Consensus 154 ~~C~lRYe~~~F~ 166 (207)
+.|+.+|+..+=.
T Consensus 123 ~~CN~n~s~~~~~ 135 (534)
T KOG3653|consen 123 DFCNANFSHLPPP 135 (534)
T ss_pred CcccCCccccCCC
Confidence 6888877754433
No 51
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=38.18 E-value=11 Score=34.43 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=5.4
Q ss_pred EeccCCCChhhH
Q 028556 117 AQCLGDLTPADC 128 (207)
Q Consensus 117 aQC~~DLs~~~C 128 (207)
..|.++-.+.+|
T Consensus 239 ~~C~~~~~~~~C 250 (439)
T PF02480_consen 239 ANCSPSGWPRRC 250 (439)
T ss_dssp EEEBTTC-TTTT
T ss_pred cCCCCCCCcCCC
Confidence 446555444444
No 52
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=36.85 E-value=43 Score=22.44 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 028556 189 AGLAILIVFLSICRRAME 206 (207)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~ 206 (207)
++|+++.++++++-||+|
T Consensus 7 l~vvll~~clC~lsrRvk 24 (74)
T PF05083_consen 7 LAVVLLSACLCRLSRRVK 24 (74)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 445566667787777766
No 53
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=36.66 E-value=17 Score=18.48 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=6.4
Q ss_pred EeeHHHHHHHHH
Q 028556 183 IIVGVVAGLAIL 194 (207)
Q Consensus 183 iv~~~v~~~~~~ 194 (207)
|+.|+++++++.
T Consensus 4 iIaPi~VGvvl~ 15 (21)
T PF13955_consen 4 IIAPIVVGVVLT 15 (21)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhhHHHHHHHH
Confidence 355666665433
No 54
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=35.62 E-value=29 Score=23.58 Aligned_cols=21 Identities=5% Similarity=0.013 Sum_probs=9.5
Q ss_pred eeHHHHHHHHHHHHHHHHHHh
Q 028556 184 IVGVVAGLAILIVFLSICRRA 204 (207)
Q Consensus 184 v~~~v~~~~~~~~~~~~~~~~ 204 (207)
++|+++.+++++....++..+
T Consensus 7 ~~Pliif~ifVap~wl~lHY~ 27 (75)
T TIGR02976 7 AIPLIIFVIFVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555444444433444333
No 55
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=35.46 E-value=19 Score=31.62 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=16.9
Q ss_pred EEEeccCCCCCCCCCCC-CCCCcEEEEeeHHHHHH
Q 028556 158 ARYWASGYYDLTDSSHD-DQVGKTVAIIVGVVAGL 191 (207)
Q Consensus 158 lRYe~~~F~~~~~~~~~-~~~~~~~~iv~~~v~~~ 191 (207)
.+++.|.+-..+..|.+ ++-+|.+.++++++++.
T Consensus 294 ~~~~~yRYl~~P~~Pvkrd~PrrA~ilil~~LiGg 328 (347)
T COG3765 294 ERFSTYRYLQKPTLPVKRDSPRRAIILILGALIGG 328 (347)
T ss_pred cceeEEEecCCCCCCCcCCCcchHHHHHHHHHHHH
Confidence 44555544444443433 55566655555555543
No 56
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=33.96 E-value=8.2 Score=33.94 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=25.8
Q ss_pred EEeccCCCCCCCCCC-CCCCCcEEEEeeHHHHHHHHHHHHHHHHHHhh
Q 028556 159 RYWASGYYDLTDSSH-DDQVGKTVAIIVGVVAGLAILIVFLSICRRAM 205 (207)
Q Consensus 159 RYe~~~F~~~~~~~~-~~~~~~~~~iv~~~v~~~~~~~~~~~~~~~~~ 205 (207)
.|..|.+-..++.|. +++-++.+.+|+++++|+ ++.+++.++||++
T Consensus 295 ~f~~~~yl~~P~~Pv~rD~Pkr~lIlil~~llG~-~lg~~~vL~r~~~ 341 (342)
T PRK11638 295 RFQTYRYLRTPEEPVKRDSPRRAFLMIMWGAVGA-LVGAGVALTRRRR 341 (342)
T ss_pred eeeeeeeecCCCcCcccCCCchhHHHHHHHHHHH-HHHheeeEeecCC
Confidence 444544544444443 356677777788877776 3333344456554
No 57
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=33.08 E-value=8.2 Score=28.39 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHh
Q 028556 195 IVFLSICRRA 204 (207)
Q Consensus 195 ~~~~~~~~~~ 204 (207)
++...|+|||
T Consensus 41 liGCWYckRR 50 (118)
T PF14991_consen 41 LIGCWYCKRR 50 (118)
T ss_dssp ----------
T ss_pred HHhheeeeec
Confidence 3333445555
No 58
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=32.34 E-value=35 Score=22.93 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=9.7
Q ss_pred EEEEeeHHHHHHHHH
Q 028556 180 TVAIIVGVVAGLAIL 194 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~ 194 (207)
-.+|.+|+.++++++
T Consensus 47 ~yAi~iPvaagl~ll 61 (81)
T KOG3488|consen 47 EYAITIPVAAGLFLL 61 (81)
T ss_pred hHHhhhHHHHHHHHH
Confidence 357778877765444
No 59
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=32.28 E-value=59 Score=24.06 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=17.6
Q ss_pred CCCcEEEEeeHHHHHHHHHHHHHH-HHHHhh
Q 028556 176 QVGKTVAIIVGVVAGLAILIVFLS-ICRRAM 205 (207)
Q Consensus 176 ~~~~~~~iv~~~v~~~~~~~~~~~-~~~~~~ 205 (207)
..+.++-.|+|.+.+|++.+++.. +++|++
T Consensus 81 p~d~aLp~VIGGLcaL~LaamGA~~LLrR~c 111 (126)
T PF03229_consen 81 PVDFALPLVIGGLCALTLAAMGAGALLRRCC 111 (126)
T ss_pred CcccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777766666655444 345544
No 60
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=30.94 E-value=50 Score=20.95 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=13.0
Q ss_pred EeeHHHHHHHHHHHHHHHHHHh
Q 028556 183 IIVGVVAGLAILIVFLSICRRA 204 (207)
Q Consensus 183 iv~~~v~~~~~~~~~~~~~~~~ 204 (207)
..+|+++...++++-++.+|+-
T Consensus 27 talGvaisAgFLaLKicmIrkh 48 (61)
T PF14986_consen 27 TALGVAISAGFLALKICMIRKH 48 (61)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555666667777753
No 61
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=30.31 E-value=81 Score=20.32 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=10.6
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHHh
Q 028556 180 TVAIIVGVVAGLAILIVFLSICRRA 204 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~~~~~ 204 (207)
++.|.+|+.+.+++ +.+..|+|-.
T Consensus 3 ~l~~Lipvsi~l~~-v~l~~flWav 26 (58)
T COG3197 3 ILYILIPVSILLGA-VGLGAFLWAV 26 (58)
T ss_pred eeeeHHHHHHHHHH-HHHHHHHHhc
Confidence 45556665443322 2233445543
No 62
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=28.85 E-value=57 Score=22.91 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=5.3
Q ss_pred EEEeeHHHHHH
Q 028556 181 VAIIVGVVAGL 191 (207)
Q Consensus 181 ~~iv~~~v~~~ 191 (207)
+.|-..+|.++
T Consensus 33 Lgm~~lvI~~i 43 (94)
T PF05393_consen 33 LGMWFLVICGI 43 (94)
T ss_pred cchhHHHHHHH
Confidence 34444555544
No 63
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=28.81 E-value=29 Score=28.49 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=15.9
Q ss_pred CcEEEEeeHHHHHHHHHHHHHH
Q 028556 178 GKTVAIIVGVVAGLAILIVFLS 199 (207)
Q Consensus 178 ~~~~~iv~~~v~~~~~~~~~~~ 199 (207)
.-.+.|++++|++++.++++|+
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~ 55 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIF 55 (221)
T ss_pred ccceeeeeeeecchhhhHHHHH
Confidence 4478899999988766655443
No 64
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=27.11 E-value=32 Score=23.61 Aligned_cols=13 Identities=31% Similarity=0.253 Sum_probs=7.5
Q ss_pred EEEEeeHHHHHHH
Q 028556 180 TVAIIVGVVAGLA 192 (207)
Q Consensus 180 ~~~iv~~~v~~~~ 192 (207)
..||.+|+++.++
T Consensus 45 ~yAi~lP~~lll~ 57 (78)
T PF07297_consen 45 EYAIILPIFLLLL 57 (78)
T ss_pred HHHHHHHHHHHHH
Confidence 4566777665443
No 65
>PF15431 TMEM190: Transmembrane protein 190
Probab=27.10 E-value=70 Score=23.49 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 028556 189 AGLAILIVFLSICRRAME 206 (207)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~ 206 (207)
.++++++..++++|+.+.
T Consensus 69 ~gll~Li~~iclFWWAkR 86 (134)
T PF15431_consen 69 GGLLLLICSICLFWWAKR 86 (134)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 345555666666666553
No 66
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=26.75 E-value=1e+02 Score=25.14 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.6
Q ss_pred EEEEee
Q 028556 180 TVAIIV 185 (207)
Q Consensus 180 ~~~iv~ 185 (207)
+|+||+
T Consensus 102 lI~lv~ 107 (202)
T PF06365_consen 102 LIALVT 107 (202)
T ss_pred EEehHH
Confidence 444443
No 67
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=26.03 E-value=46 Score=23.69 Aligned_cols=11 Identities=27% Similarity=0.166 Sum_probs=4.7
Q ss_pred EEEeeHHHHHH
Q 028556 181 VAIIVGVVAGL 191 (207)
Q Consensus 181 ~~iv~~~v~~~ 191 (207)
++...++++.+
T Consensus 45 LA~GGG~iLil 55 (98)
T PF07204_consen 45 LAAGGGLILIL 55 (98)
T ss_pred hhccchhhhHH
Confidence 34444444433
No 68
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=25.71 E-value=62 Score=27.69 Aligned_cols=7 Identities=43% Similarity=0.506 Sum_probs=2.9
Q ss_pred EEEEeeH
Q 028556 180 TVAIIVG 186 (207)
Q Consensus 180 ~~~iv~~ 186 (207)
.+.|+++
T Consensus 212 ~W~iv~g 218 (278)
T PF06697_consen 212 WWKIVVG 218 (278)
T ss_pred eEEEEEE
Confidence 3344444
No 69
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=25.52 E-value=46 Score=27.61 Aligned_cols=10 Identities=10% Similarity=0.341 Sum_probs=4.1
Q ss_pred HHHHHHHhhc
Q 028556 197 FLSICRRAME 206 (207)
Q Consensus 197 ~~~~~~~~~~ 206 (207)
++.++|-+.|
T Consensus 207 LvgLyr~C~k 216 (259)
T PF07010_consen 207 LVGLYRMCWK 216 (259)
T ss_pred HHHHHHHhhc
Confidence 3344444333
No 70
>PTZ00045 apical membrane antigen 1; Provisional
Probab=25.12 E-value=67 Score=30.31 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=7.6
Q ss_pred CcEEEEeeHHHHHHHHH
Q 028556 178 GKTVAIIVGVVAGLAIL 194 (207)
Q Consensus 178 ~~~~~iv~~~v~~~~~~ 194 (207)
.+++.|++++..+++++
T Consensus 513 ~~~~i~iia~~~~~~~v 529 (595)
T PTZ00045 513 KRILIIIIAATGAVVLV 529 (595)
T ss_pred cceehhHHHHHHHHHHH
Confidence 34555555444433333
No 71
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=24.43 E-value=25 Score=30.24 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred EEeeHHHHHHHHHHHHHHHHHHhhc
Q 028556 182 AIIVGVVAGLAILIVFLSICRRAME 206 (207)
Q Consensus 182 ~iv~~~v~~~~~~~~~~~~~~~~~~ 206 (207)
++|+.+++.++.++++++|.|||+.
T Consensus 152 aVVI~~iLLIA~iIa~icyrrkR~G 176 (290)
T PF05454_consen 152 AVVIAAILLIAGIIACICYRRKRKG 176 (290)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 3444433334344444445455443
No 72
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=24.09 E-value=73 Score=20.99 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=8.3
Q ss_pred EeeHHHHHHHHHHH
Q 028556 183 IIVGVVAGLAILIV 196 (207)
Q Consensus 183 iv~~~v~~~~~~~~ 196 (207)
|+++++++++++++
T Consensus 3 IiiSIvLai~lLI~ 16 (66)
T PF07438_consen 3 IIISIVLAIALLIS 16 (66)
T ss_pred hhHHHHHHHHHHHH
Confidence 56677776655444
No 73
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=23.37 E-value=53 Score=28.69 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=17.5
Q ss_pred CCCCcEEEEeeHHHHHHHHH---HHHHHHHHHhhcC
Q 028556 175 DQVGKTVAIIVGVVAGLAIL---IVFLSICRRAMER 207 (207)
Q Consensus 175 ~~~~~~~~iv~~~v~~~~~~---~~~~~~~~~~~~~ 207 (207)
++.+|.+.+++++++++++. +++..++|++++|
T Consensus 290 d~Pkr~lIlil~~~lG~~lg~~~vL~r~~~r~~~~~ 325 (325)
T PRK15471 290 DSPKKAITLVLAVLLGGMIGAGIVLGRNALRNYNAK 325 (325)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 45566666666666554332 2223356666655
No 74
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.27 E-value=68 Score=23.93 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=14.5
Q ss_pred CcEEEEeeHHHHHHHHHHHHHHHHHHh
Q 028556 178 GKTVAIIVGVVAGLAILIVFLSICRRA 204 (207)
Q Consensus 178 ~~~~~iv~~~v~~~~~~~~~~~~~~~~ 204 (207)
+-++++++|+++.+++++.++...||+
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555666665555556666666554
No 75
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=23.27 E-value=43 Score=29.82 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEEeccCCCCCCCCCC-CCCCCcEEEEeeHHHHHHH
Q 028556 158 ARYWASGYYDLTDSSH-DDQVGKTVAIIVGVVAGLA 192 (207)
Q Consensus 158 lRYe~~~F~~~~~~~~-~~~~~~~~~iv~~~v~~~~ 192 (207)
.++..|.+-..++.|. +++.+|.+.+|+++++|++
T Consensus 316 ~~~~~fryl~~p~~P~~rd~Pkr~lIlvl~~llG~~ 351 (377)
T PRK10381 316 VNFTPFKYQLSPSLPVKKDGPGKALIVILAALIGGM 351 (377)
T ss_pred cccceEEecCCCcCCCCCCCcchhHHHHHHHHHHHH
Confidence 3444444444444333 3666777777777776653
No 76
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=23.05 E-value=66 Score=31.54 Aligned_cols=19 Identities=11% Similarity=-0.202 Sum_probs=10.0
Q ss_pred cCCCcccEEEcCceeEEEe
Q 028556 143 CGSAPAADVFLAQCYARYW 161 (207)
Q Consensus 143 c~~~~gg~i~~~~C~lRYe 161 (207)
+..+.|..+-...-.+|=+
T Consensus 214 FD~ktG~Wv~~G~G~Vk~~ 232 (807)
T PF10577_consen 214 FDEKTGAWVKSGLGMVKRE 232 (807)
T ss_pred ecCCcceeEecceEEEEee
Confidence 3445565555555555544
No 77
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=22.13 E-value=60 Score=24.86 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=19.3
Q ss_pred eEEEeccCCCCCCC--CCCC------CCCCcEEEEeeH
Q 028556 157 YARYWASGYYDLTD--SSHD------DQVGKTVAIIVG 186 (207)
Q Consensus 157 ~lRYe~~~F~~~~~--~~~~------~~~~~~~~iv~~ 186 (207)
.++|+...|--.+. .++. +++|++++||+|
T Consensus 88 aVqy~~grftip~g~g~~GDSGRpi~DNsGrVVaIVLG 125 (158)
T PF00944_consen 88 AVQYSNGRFTIPTGVGKPGDSGRPIFDNSGRVVAIVLG 125 (158)
T ss_dssp EEEEETTEEEEETTS-STTSTTEEEESTTSBEEEEEEE
T ss_pred eEEEeCCeEEeccCCCCCCCCCCccCcCCCCEEEEEec
Confidence 47788777653221 1211 688999999986
No 78
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=21.93 E-value=1.5e+02 Score=25.92 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=12.8
Q ss_pred ccEEEcCceeEEEecc
Q 028556 148 AADVFLAQCYARYWAS 163 (207)
Q Consensus 148 gg~i~~~~C~lRYe~~ 163 (207)
.--|+-.+|-|.|++.
T Consensus 108 DpyvLkGSCgleY~L~ 123 (318)
T PF06682_consen 108 DPYVLKGSCGLEYRLE 123 (318)
T ss_pred CceecCCccceEEEEE
Confidence 3468889999999854
No 79
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.66 E-value=31 Score=31.47 Aligned_cols=9 Identities=22% Similarity=0.759 Sum_probs=0.0
Q ss_pred EEEeeHHHH
Q 028556 181 VAIIVGVVA 189 (207)
Q Consensus 181 ~~iv~~~v~ 189 (207)
+++++++++
T Consensus 355 l~vVlgvav 363 (439)
T PF02480_consen 355 LGVVLGVAV 363 (439)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 334444433
No 80
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=21.61 E-value=80 Score=24.88 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 028556 187 VVAGLAILIVFLSICRRAME 206 (207)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~ 206 (207)
+|+++.+.++...|+||+..
T Consensus 157 ~VlA~~VA~L~~~F~RR~~r 176 (215)
T PF05084_consen 157 VVLAVSVAMLTWFFLRRTGR 176 (215)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34444455555566777653
No 81
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.41 E-value=1e+02 Score=20.01 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 028556 193 ILIVFLSICRR 203 (207)
Q Consensus 193 ~~~~~~~~~~~ 203 (207)
+++.++.|.-|
T Consensus 21 ~fiavi~~ayr 31 (60)
T COG4736 21 FFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHhc
Confidence 33334444433
Done!