Query 028556
Match_columns 207
No_of_seqs 143 out of 1386
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 99.9 6.4E-24 2.2E-28 155.1 10.1 94 72-165 4-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 99.9 2.8E-23 9.5E-28 151.7 10.2 96 70-165 2-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.8 4.4E-20 1.5E-24 134.7 6.3 59 7-65 50-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.8 1.3E-19 4.5E-24 132.1 5.6 62 4-65 46-108 (108)
5 2k1k_A Ephrin type-A receptor 93.8 0.021 7.1E-07 33.0 1.2 28 177-204 10-37 (38)
6 2jwa_A Receptor tyrosine-prote 93.7 0.012 4E-07 35.1 -0.0 27 180-206 14-40 (44)
7 2ks1_B Epidermal growth factor 92.5 0.035 1.2E-06 33.1 0.8 12 194-205 27-38 (44)
8 2l2t_A Receptor tyrosine-prote 90.5 0.2 7E-06 29.7 2.7 12 194-205 26-37 (44)
9 2knc_B Integrin beta-3; transm 83.3 0.22 7.6E-06 33.3 -0.0 24 180-203 10-33 (79)
10 1afo_A Glycophorin A; integral 81.3 0.96 3.3E-05 25.8 2.1 28 180-207 12-40 (40)
11 2k9y_A Ephrin type-A receptor 78.6 0.22 7.4E-06 28.8 -1.2 16 180-195 12-27 (41)
12 4b19_A PEPA1; toxin, toxin apo 71.9 1.8 6.3E-05 23.2 1.5 24 183-207 7-30 (30)
13 1cd1_A CD1, MCD1D.1; immunolog 71.3 0.83 2.8E-05 38.1 0.0 26 180-205 283-309 (315)
14 2l8s_A Integrin alpha-1; trans 68.6 2.7 9.2E-05 25.9 1.9 18 181-198 10-27 (54)
15 2knc_A Integrin alpha-IIB; tra 67.1 3 0.0001 25.7 1.9 18 181-198 13-30 (54)
16 2k9j_B Integrin beta-3; transm 67.0 2 6.7E-05 25.2 1.0 25 180-204 9-33 (43)
17 2k1a_A Integrin alpha-IIB; sin 62.7 4.1 0.00014 23.7 1.8 24 180-203 10-33 (42)
18 1iij_A ERBB-2 receptor protein 61.1 1.6 5.3E-05 24.5 -0.2 6 199-204 28-33 (35)
19 2l34_A TYRO protein tyrosine k 60.5 0.82 2.8E-05 25.3 -1.4 21 180-200 9-29 (33)
20 2l6w_A Beta-type platelet-deri 46.5 5.9 0.0002 22.5 0.0 11 196-206 26-36 (39)
21 2l9u_A Receptor tyrosine-prote 40.2 21 0.0007 19.8 2.2 11 185-195 10-20 (40)
22 1q55_A EP-cadherin, C-cadherin 38.0 6.8 0.00023 37.4 0.0 17 180-196 707-723 (880)
23 2klu_A T-cell surface glycopro 36.0 8.3 0.00029 24.6 0.2 13 183-195 12-24 (70)
24 1svp_A Sindbis virus capsid pr 31.8 22 0.00074 26.0 1.8 31 157-187 90-128 (161)
25 2lx0_A Membrane fusion protein 31.4 35 0.0012 17.8 2.1 24 184-207 9-32 (32)
26 2kv5_A FST, putative uncharact 30.9 15 0.0005 20.1 0.6 12 183-194 8-19 (33)
27 1vcp_A Semliki forest virus ca 30.4 24 0.00081 25.4 1.8 30 157-186 81-118 (149)
28 1ep5_B Capsid protein C, coat 29.0 26 0.0009 25.5 1.9 30 157-186 88-125 (157)
29 1kxf_A Sindbis virus capsid pr 24.2 33 0.0011 27.4 1.8 31 157-187 195-233 (264)
30 1s7q_A H-2KB, H-2 class I hist 23.7 17 0.00057 30.6 0.0 6 182-187 285-290 (348)
31 2yew_A Capsid protein, coat pr 22.7 30 0.001 27.5 1.3 30 158-187 186-223 (253)
32 2j5l_A Apical membrane antigen 22.3 18 0.00063 32.4 0.0 28 177-204 509-537 (581)
33 2llm_A Amyloid beta A4 protein 27.4 19 0.00066 20.9 0.0 7 197-203 36-42 (43)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.90 E-value=6.4e-24 Score=155.10 Aligned_cols=94 Identities=24% Similarity=0.536 Sum_probs=78.2
Q ss_pred cccccccCCC-cCCcHHHHHHHHHHHHHHHHhh-----ccccc-----CCcceEEEEeccCCCChhhHHHHHHHHHHHHH
Q 028556 72 SIWYKKCSKS-VNNDVEFFKRRDDVLADLQTAV-----SFKVS-----SSGFVEGFAQCLGDLTPADCTTCLAEAIAKLK 140 (207)
Q Consensus 72 ~~~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~a-----~f~~~-----~~~~vYgLaQC~~DLs~~~C~~CL~~a~~~~~ 140 (207)
...++.|++. .+.+..|..+++.||..|...+ .|+++ +..+||||+||+|||++.+|+.||+.++.+++
T Consensus 4 ~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~ 83 (108)
T 3a2e_A 4 AFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIF 83 (108)
T ss_dssp CEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred ceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4456677553 4556678888999999987654 23321 23589999999999999999999999999999
Q ss_pred hhcCCCcccEEEcCceeEEEeccCC
Q 028556 141 NLCGSAPAADVFLAQCYARYWASGY 165 (207)
Q Consensus 141 ~~c~~~~gg~i~~~~C~lRYe~~~F 165 (207)
++|++++||+|++++|+||||+++|
T Consensus 84 ~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 84 SICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.89 E-value=2.8e-23 Score=151.73 Aligned_cols=96 Identities=26% Similarity=0.547 Sum_probs=79.7
Q ss_pred cccccccccCCC-cCCcHHHHHHHHHHHHHHHHhh-----ccccc---C--CcceEEEEeccCCCChhhHHHHHHHHHHH
Q 028556 70 DTSIWYKKCSKS-VNNDVEFFKRRDDVLADLQTAV-----SFKVS---S--SGFVEGFAQCLGDLTPADCTTCLAEAIAK 138 (207)
Q Consensus 70 ~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~a-----~f~~~---~--~~~vYgLaQC~~DLs~~~C~~CL~~a~~~ 138 (207)
++++.++.|++. .+.+..|..++..||+.|...+ +|+++ . ..+||||+||+|||++.+|+.||..++.+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Confidence 455677788653 3455677788999999987543 34432 1 25899999999999999999999999999
Q ss_pred HHhhcCCCcccEEEcCceeEEEeccCC
Q 028556 139 LKNLCGSAPAADVFLAQCYARYWASGY 165 (207)
Q Consensus 139 ~~~~c~~~~gg~i~~~~C~lRYe~~~F 165 (207)
++++|++++||+|++++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 999999999999999999999999998
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.80 E-value=4.4e-20 Score=134.68 Aligned_cols=59 Identities=32% Similarity=0.763 Sum_probs=56.2
Q ss_pred CCCCCcEEEEEeccCCCChhchHHHHHHHHHHHhhhCCCCcceEEEcceeEEEEEeeee
Q 028556 7 TPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF 65 (207)
Q Consensus 7 ~~~~~~vygl~qCr~D~~~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lrys~~~f 65 (207)
+.+.++||||+|||+|+++++|+.||+.|+.++++.||++++|+||++.|+||||+++|
T Consensus 50 ~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 50 SGGAPTAYGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp STTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred CCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 44568999999999999999999999999999999999999999999999999999987
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.78 E-value=1.3e-19 Score=132.12 Aligned_cols=62 Identities=31% Similarity=0.730 Sum_probs=56.9
Q ss_pred CCCCCC-CCcEEEEEeccCCCChhchHHHHHHHHHHHhhhCCCCcceEEEcceeEEEEEeeee
Q 028556 4 GTSTPP-EATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF 65 (207)
Q Consensus 4 ~~~~~~-~~~vygl~qCr~D~~~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lrys~~~f 65 (207)
++.|.+ .++||||+|||+|+++++|+.||+.++.++++.||++++++||++.|+||||+++|
T Consensus 46 ~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 46 SRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp EECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred EecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 344544 47999999999999999999999999999999999999999999999999999987
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=93.79 E-value=0.021 Score=32.95 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=19.2
Q ss_pred CCcEEEEeeHHHHHHHHHHHHHHHHHHh
Q 028556 177 VGKTVAIIVGVVAGLAILIVFLSICRRA 204 (207)
Q Consensus 177 ~~~~~~iv~~~v~~~~~~~~~~~~~~~~ 204 (207)
.+.+..||+++++++++++.+.+|+|||
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 3456678888888877666666666655
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=93.68 E-value=0.012 Score=35.07 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=14.0
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHHhhc
Q 028556 180 TVAIIVGVVAGLAILIVFLSICRRAME 206 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~~~~~~~ 206 (207)
+.++|+|+++.+++.+++..|+|||+.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 455677755444344444455666543
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.48 E-value=0.035 Score=33.06 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhh
Q 028556 194 LIVFLSICRRAM 205 (207)
Q Consensus 194 ~~~~~~~~~~~~ 205 (207)
+++.+.|++|++
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 333334444443
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=90.54 E-value=0.2 Score=29.66 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhh
Q 028556 194 LIVFLSICRRAM 205 (207)
Q Consensus 194 ~~~~~~~~~~~~ 205 (207)
+++.+.|++|++
T Consensus 26 i~~~~~~~~RRR 37 (44)
T 2l2t_A 26 VGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 333344444444
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=83.31 E-value=0.22 Score=33.33 Aligned_cols=24 Identities=4% Similarity=0.239 Sum_probs=15.9
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHH
Q 028556 180 TVAIIVGVVAGLAILIVFLSICRR 203 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~~~~ 203 (207)
+++|+++++++++++.+++.++||
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 566777888777666555555555
No 10
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=81.33 E-value=0.96 Score=25.83 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=18.5
Q ss_pred EEEEeeHHHHHHHHHHHHHHHH-HHhhcC
Q 028556 180 TVAIIVGVVAGLAILIVFLSIC-RRAMER 207 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~~-~~~~~~ 207 (207)
++.|+.++.++++..++++.|+ ||..||
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl~Kk 40 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRLIKK 40 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4456778888877777777765 444444
No 11
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=78.62 E-value=0.22 Score=28.79 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=8.6
Q ss_pred EEEEeeHHHHHHHHHH
Q 028556 180 TVAIIVGVVAGLAILI 195 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~ 195 (207)
+..|++++++++++++
T Consensus 12 ~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 12 NLAVIGGVAVGVVLLL 27 (41)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eEEEEeehhHHHHHHH
Confidence 4445666666555443
No 12
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=71.85 E-value=1.8 Score=23.21 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=15.6
Q ss_pred EeeHHHHHHHHHHHHHHHHHHhhcC
Q 028556 183 IIVGVVAGLAILIVFLSICRRAMER 207 (207)
Q Consensus 183 iv~~~v~~~~~~~~~~~~~~~~~~~ 207 (207)
|+.+++.+. ++.++--|+++|.||
T Consensus 7 iia~visGc-ivalF~hWL~~r~~k 30 (30)
T 4b19_A 7 IIAPVISGC-AIAFFSYWLSRRNTK 30 (30)
T ss_dssp STTTTHHHH-HHHHHHHHHHHHSCC
T ss_pred hHHHHHHHH-HHHHHHHHHHhccCC
Confidence 344555544 555567788888876
No 13
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=71.27 E-value=0.83 Score=38.11 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=0.0
Q ss_pred EEEEeeHHHHHHHHHHHH-HHHHHHhh
Q 028556 180 TVAIIVGVVAGLAILIVF-LSICRRAM 205 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~-~~~~~~~~ 205 (207)
++.|+++|++++++++++ ++++||++
T Consensus 283 ~~~i~~~vi~~l~ll~~~~~~~~~~~~ 309 (315)
T 1cd1_A 283 VGLIVFIVLIMLVVVGAVVYYIWRRRS 309 (315)
T ss_dssp ---------------------------
T ss_pred cceeehhHHHHHHHHHHHHHhheehhc
Confidence 344555554444333332 44555554
No 14
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=68.64 E-value=2.7 Score=25.86 Aligned_cols=18 Identities=28% Similarity=0.637 Sum_probs=10.2
Q ss_pred EEEeeHHHHHHHHHHHHH
Q 028556 181 VAIIVGVVAGLAILIVFL 198 (207)
Q Consensus 181 ~~iv~~~v~~~~~~~~~~ 198 (207)
..|+++++++++++++++
T Consensus 10 WiIi~svl~GLLLL~Lii 27 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLI 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666776665554433
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=67.05 E-value=3 Score=25.66 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=10.1
Q ss_pred EEEeeHHHHHHHHHHHHH
Q 028556 181 VAIIVGVVAGLAILIVFL 198 (207)
Q Consensus 181 ~~iv~~~v~~~~~~~~~~ 198 (207)
..|+++++++++++++++
T Consensus 13 wiIi~svl~GLllL~li~ 30 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILV 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666665554433
No 16
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=67.04 E-value=2 Score=25.16 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=15.2
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHHh
Q 028556 180 TVAIIVGVVAGLAILIVFLSICRRA 204 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~~~~~ 204 (207)
+.+|+.+++++++++.+.+..+||.
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~ 33 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766555555555553
No 17
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=62.71 E-value=4.1 Score=23.68 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=14.3
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHH
Q 028556 180 TVAIIVGVVAGLAILIVFLSICRR 203 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~~~~ 203 (207)
+..|+++++++++++++++..+|+
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777666555544444
No 18
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=61.11 E-value=1.6 Score=24.47 Aligned_cols=6 Identities=17% Similarity=0.146 Sum_probs=2.5
Q ss_pred HHHHHh
Q 028556 199 SICRRA 204 (207)
Q Consensus 199 ~~~~~~ 204 (207)
.+++||
T Consensus 28 ~~~iRR 33 (35)
T 1iij_A 28 GILIKR 33 (35)
T ss_dssp THHHHH
T ss_pred heEEee
Confidence 344444
No 19
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=60.46 E-value=0.82 Score=25.29 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=10.5
Q ss_pred EEEEeeHHHHHHHHHHHHHHH
Q 028556 180 TVAIIVGVVAGLAILIVFLSI 200 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~~~~~ 200 (207)
+..|+++-+++.+++++...|
T Consensus 9 IaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 9 LAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeEeHHHHHHHHHHHHHHhh
Confidence 445666666655444443333
No 20
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=46.46 E-value=5.9 Score=22.54 Aligned_cols=11 Identities=9% Similarity=0.151 Sum_probs=5.4
Q ss_pred HHHHHHHHhhc
Q 028556 196 VFLSICRRAME 206 (207)
Q Consensus 196 ~~~~~~~~~~~ 206 (207)
+++.+.|+++-
T Consensus 26 IiLi~~w~qKP 36 (39)
T 2l6w_A 26 IILIMLWQKKP 36 (39)
Confidence 33445566553
No 21
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=40.21 E-value=21 Score=19.77 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=4.6
Q ss_pred eHHHHHHHHHH
Q 028556 185 VGVVAGLAILI 195 (207)
Q Consensus 185 ~~~v~~~~~~~ 195 (207)
+.+++++++++
T Consensus 10 lt~i~gl~vif 20 (40)
T 2l9u_A 10 LTVIAGLVVIF 20 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 22
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=38.03 E-value=6.8 Score=37.35 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=0.0
Q ss_pred EEEEeeHHHHHHHHHHH
Q 028556 180 TVAIIVGVVAGLAILIV 196 (207)
Q Consensus 180 ~~~iv~~~v~~~~~~~~ 196 (207)
+++|++++++.++++++
T Consensus 707 ii~il~~~~~ll~~~ll 723 (880)
T 1q55_A 707 ILVILGSVLALLILFLL 723 (880)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566665554433333
No 23
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=35.98 E-value=8.3 Score=24.65 Aligned_cols=13 Identities=54% Similarity=0.928 Sum_probs=8.4
Q ss_pred EeeHHHHHHHHHH
Q 028556 183 IIVGVVAGLAILI 195 (207)
Q Consensus 183 iv~~~v~~~~~~~ 195 (207)
||+|.++++++++
T Consensus 12 ivlGg~~~lll~~ 24 (70)
T 2klu_A 12 IVLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 6778777664443
No 24
>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} SCOP: b.47.1.3 PDB: 1kxb_A 1kxa_A 2snw_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A
Probab=31.82 E-value=22 Score=26.03 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEeccCCCCCCCC--C---CC---CCCCcEEEEeeHH
Q 028556 157 YARYWASGYYDLTDS--S---HD---DQVGKTVAIIVGV 187 (207)
Q Consensus 157 ~lRYe~~~F~~~~~~--~---~~---~~~~~~~~iv~~~ 187 (207)
-++||+..|--.+-. + +. +++|++++||++.
T Consensus 90 aVqy~~grftvp~GvG~~GDSGRpI~DN~GrVVaivlgg 128 (161)
T 1svp_A 90 AVQYSGGRFTIPRGVGGRGDAGRPIMDNSGRVVAIVLGG 128 (161)
T ss_dssp EEEEETTEEEEETTSCCTTCTTCEEECTTSCEEEEEEEE
T ss_pred eEEEeCCeEEecccCCCCCCCCCccCcCCCcEEEEEecC
Confidence 378888877543321 1 11 6889999999863
No 25
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=31.42 E-value=35 Score=17.76 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=10.0
Q ss_pred eeHHHHHHHHHHHHHHHHHHhhcC
Q 028556 184 IVGVVAGLAILIVFLSICRRAMER 207 (207)
Q Consensus 184 v~~~v~~~~~~~~~~~~~~~~~~~ 207 (207)
+.|.|+.+.+++.....++...||
T Consensus 9 iaglvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444333333333334554443
No 26
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=30.86 E-value=15 Score=20.09 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=6.8
Q ss_pred EeeHHHHHHHHH
Q 028556 183 IIVGVVAGLAIL 194 (207)
Q Consensus 183 iv~~~v~~~~~~ 194 (207)
|++|+++++++.
T Consensus 8 IIaPivVGvvl~ 19 (33)
T 2kv5_A 8 VIAPIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666433
No 27
>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} SCOP: b.47.1.3 PDB: 1dyl_A 1vcq_A
Probab=30.39 E-value=24 Score=25.41 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred eEEEeccCCCCCCCC--C---CC---CCCCcEEEEeeH
Q 028556 157 YARYWASGYYDLTDS--S---HD---DQVGKTVAIIVG 186 (207)
Q Consensus 157 ~lRYe~~~F~~~~~~--~---~~---~~~~~~~~iv~~ 186 (207)
-++||...|--..-. + +. +++|++++||++
T Consensus 81 aVqy~~grftvp~G~g~~GdSGrpI~Dn~GrVVaIVlG 118 (149)
T 1vcp_A 81 AVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLG 118 (149)
T ss_dssp EEEEETTEEEEETTSCCTTCTTCEEECTTSCEEEEEEE
T ss_pred eEEEeCCeEEecccCCCCCCCCCccCcCCCcEEEEEec
Confidence 378888777543321 1 11 688999999986
No 28
>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} SCOP: b.47.1.3 PDB: 1ep6_A 3j0c_C
Probab=29.03 E-value=26 Score=25.47 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=19.7
Q ss_pred eEEEeccCCCCCCCC--CC---C---CCCCcEEEEeeH
Q 028556 157 YARYWASGYYDLTDS--SH---D---DQVGKTVAIIVG 186 (207)
Q Consensus 157 ~lRYe~~~F~~~~~~--~~---~---~~~~~~~~iv~~ 186 (207)
-++||...|--.+-. ++ . +++|++++||+|
T Consensus 88 aVqy~~grftip~G~g~~GdSGrpI~Dn~GrVVaIVlG 125 (157)
T 1ep5_B 88 AVQYENGRFTVPKGVGAKGDSGRPILDNQGRVVAIVLG 125 (157)
T ss_dssp EEEEETTEEEEETTCCCTTCTTCEEECTTSCEEEEEEE
T ss_pred eEEEeCCeEEeccCCCCCCCCCCccCcCCCcEEEEEec
Confidence 378888777543321 11 1 688999999986
No 29
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A
Probab=24.17 E-value=33 Score=27.42 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=19.4
Q ss_pred eEEEeccCCCCCCCC-----CCC---CCCCcEEEEeeHH
Q 028556 157 YARYWASGYYDLTDS-----SHD---DQVGKTVAIIVGV 187 (207)
Q Consensus 157 ~lRYe~~~F~~~~~~-----~~~---~~~~~~~~iv~~~ 187 (207)
-++||+-.|--.... ++. ++.|++++||+|.
T Consensus 195 aVqy~~grftvp~G~G~~GDSGRpI~DN~GrVVaIVLGG 233 (264)
T 1kxf_A 195 AVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGG 233 (264)
T ss_dssp EEEEETTEEEEETTSCCTTCTTCEEECTTSCEEEEEEEE
T ss_pred eEEeeCCeEEecccCCCCCCCCCccccCCCcEEEEEecC
Confidence 377777766432211 111 6889999999873
No 30
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=23.70 E-value=17 Score=30.60 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred EEeeHH
Q 028556 182 AIIVGV 187 (207)
Q Consensus 182 ~iv~~~ 187 (207)
+|++++
T Consensus 285 ~i~~~~ 290 (348)
T 1s7q_A 285 ATVAVL 290 (348)
T ss_dssp ------
T ss_pred EEEeeh
Confidence 344443
No 31
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=22.68 E-value=30 Score=27.48 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=18.7
Q ss_pred EEEeccCCCCCCCC-----CCC---CCCCcEEEEeeHH
Q 028556 158 ARYWASGYYDLTDS-----SHD---DQVGKTVAIIVGV 187 (207)
Q Consensus 158 lRYe~~~F~~~~~~-----~~~---~~~~~~~~iv~~~ 187 (207)
++||+-.|--..-. ++. ++.|++++||+|.
T Consensus 186 VQy~~grftvp~G~G~~GDSGRpI~DN~GrVVaIVLGG 223 (253)
T 2yew_A 186 VQFSNGRFTIPTGSGKPGDSGRPIFDNTGKVVAIVLGG 223 (253)
T ss_dssp CEEETTEEEEETTSCCSSCTTCEEECSSCBEEEEEEEE
T ss_pred EEeeCCeEEcccCCCCCCCCCCccccCCCcEEEEEecC
Confidence 67777666432211 111 6889999999873
No 32
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=22.31 E-value=18 Score=32.38 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCcEEEEeeHHHHHHHHHHHHHH-HHHHh
Q 028556 177 VGKTVAIIVGVVAGLAILIVFLS-ICRRA 204 (207)
Q Consensus 177 ~~~~~~iv~~~v~~~~~~~~~~~-~~~~~ 204 (207)
..+.+.|++++.+++++++++.. ++||.
T Consensus 509 ~~~~~~ii~~~~~~~~~~a~~~~~~~~k~ 537 (581)
T 2j5l_A 509 TYDNMKIIIASSAAVAVLATILMVYLYKR 537 (581)
T ss_dssp -----------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555554444443333 33543
No 33
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=27.37 E-value=19 Score=20.87 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 028556 197 FLSICRR 203 (207)
Q Consensus 197 ~~~~~~~ 203 (207)
.+.++||
T Consensus 36 sl~mlRr 42 (43)
T 2llm_A 36 TLVMLKK 42 (43)
Confidence 3444444
Done!