BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028557
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQQ|A Chain A, Single Stranded Dna Binding Protein And Ssdna Complex
pdb|1EQQ|B Chain B, Single Stranded Dna Binding Protein And Ssdna Complex
pdb|1EQQ|C Chain C, Single Stranded Dna Binding Protein And Ssdna Complex
pdb|1EQQ|D Chain D, Single Stranded Dna Binding Protein And Ssdna Complex
Length = 178
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VAS+++ KG Q+YI G+L
Sbjct: 67 VASEYLRKGSQVYIEGQL 84
>pdb|1SRU|A Chain A, Crystal Structure Of Full Length E. Coli Ssb Protein
pdb|1SRU|B Chain B, Crystal Structure Of Full Length E. Coli Ssb Protein
pdb|1SRU|C Chain C, Crystal Structure Of Full Length E. Coli Ssb Protein
pdb|1SRU|D Chain D, Crystal Structure Of Full Length E. Coli Ssb Protein
Length = 113
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV----RKSAT-----QTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A LA R AT QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VAS+++ KG Q+YI G+L
Sbjct: 67 VASEYLRKGSQVYIEGQL 84
>pdb|1EYG|A Chain A, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
Bound To Two 35-Mer Single Strand Dnas
pdb|1EYG|B Chain B, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
Bound To Two 35-Mer Single Strand Dnas
pdb|1EYG|C Chain C, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
Bound To Two 35-Mer Single Strand Dnas
pdb|1EYG|D Chain D, Crystal Structure Of Chymotryptic Fragment Of E. Coli Ssb
Bound To Two 35-Mer Single Strand Dnas
Length = 116
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV----RKSAT-----QTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A LA R AT QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VAS+++ KG Q+YI G+L
Sbjct: 67 VASEYLRKGSQVYIEGQL 84
>pdb|1QVC|A Chain A, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
pdb|1QVC|B Chain B, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
pdb|1QVC|C Chain C, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
pdb|1QVC|D Chain D, Crystal Structure Analysis Of Single Stranded Dna Binding
Protein (Ssb) From E.Coli
Length = 145
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + QT W + + +LA
Sbjct: 6 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 65
Query: 138 VASQHVEKGQQIYISGRL 155
VAS+++ KG Q+YI G+L
Sbjct: 66 VASEYLRKGSQVYIEGQL 83
>pdb|1KAW|A Chain A, Structure Of Single Stranded Dna Binding Protein (Ssb)
pdb|1KAW|B Chain B, Structure Of Single Stranded Dna Binding Protein (Ssb)
pdb|1KAW|C Chain C, Structure Of Single Stranded Dna Binding Protein (Ssb)
pdb|1KAW|D Chain D, Structure Of Single Stranded Dna Binding Protein (Ssb)
Length = 135
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + QT W + + +LA
Sbjct: 6 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 65
Query: 138 VASQHVEKGQQIYISGRL 155
VAS+++ KG Q+YI G+L
Sbjct: 66 VASEYLRKGSQVYIEGQL 83
>pdb|3TQY|A Chain A, Structure Of A Single-Stranded Dna-Binding Protein (Ssb),
From Coxiella Burnetii
pdb|3TQY|B Chain B, Structure Of A Single-Stranded Dna-Binding Protein (Ssb),
From Coxiella Burnetii
pdb|3TQY|C Chain C, Structure Of A Single-Stranded Dna-Binding Protein (Ssb),
From Coxiella Burnetii
pdb|3TQY|D Chain D, Structure Of A Single-Stranded Dna-Binding Protein (Ssb),
From Coxiella Burnetii
Length = 158
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV----RKSAT-----QTSWINLTFWDELAH 137
N V LIG +G E ++ P+G +A LA R T +T W + F++ LA
Sbjct: 9 NKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAE 68
Query: 138 VASQHVEKGQQIYISGRL 155
+ +++ KG +IYI G L
Sbjct: 69 IVGEYLRKGSKIYIEGSL 86
>pdb|3PGZ|A Chain A, Crystal Structure Of A Single Strand Binding Protein (Ssb)
From Bartonella Henselae
pdb|3PGZ|B Chain B, Crystal Structure Of A Single Strand Binding Protein (Ssb)
From Bartonella Henselae
Length = 193
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDE-LA 136
N V LIG +G E + L SG +A R+A +S +T W N+ ++E L
Sbjct: 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLV 86
Query: 137 HVASQHVEKGQQIYISGRL 155
V Q+++KG +IYI G+L
Sbjct: 87 KVVEQYLKKGSKIYIEGQL 105
>pdb|2VW9|A Chain A, Single Stranded Dna Binding Protein Complex From
Helicobacter Pylori
pdb|2VW9|B Chain B, Single Stranded Dna Binding Protein Complex From
Helicobacter Pylori
Length = 134
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELA 136
+ N V ++G + +E K+LPSG A LA + + +I+ + A
Sbjct: 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTA 60
Query: 137 HVASQHVEKGQQIYISGRLV 156
+A+Q++ KG + I GRL
Sbjct: 61 EIANQYLSKGSSVLIEGRLT 80
>pdb|3LGJ|A Chain A, Crystal Structure Of Single-Stranded Binding Protein (Ssb)
From Bartonella Henselae
pdb|3LGJ|B Chain B, Crystal Structure Of Single-Stranded Binding Protein (Ssb)
From Bartonella Henselae
Length = 169
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWD-E 134
+ N V LIG +G E+K + SG + R+A +S +T W ++ ++
Sbjct: 22 MLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPH 81
Query: 135 LAHVASQHVEKGQQIYISGRL 155
A +A Q++ KG ++YI G+L
Sbjct: 82 FAKIALQYLHKGSKVYIEGKL 102
>pdb|3VDY|A Chain A, B. Subtilis SsbbSSDNA
pdb|3VDY|B Chain B, B. Subtilis SsbbSSDNA
Length = 116
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS------WINLTFWDELAHV 138
+ N V L+G + + ++ +G +A LAV +S S ++N T W + A
Sbjct: 4 MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAEN 63
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDG 165
+ + +KG + +SGR+ + E+ +G
Sbjct: 64 TALYCQKGSLVGVSGRIQTRSYENEEG 90
>pdb|2CWA|A Chain A, Crystal Structure Of The Single-stranded Dna Binding
Protein From Thermus Thermophilus Hb8
Length = 263
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV---RKSATQ-TSWINLTFWDELAHVASQH 142
N V L G + E ++ P G +A LAV R+ A + T ++ + W +LA A++
Sbjct: 129 NQVFLXGNLTRDPELRYTPQGTAVARLGLAVNERRQGAEERTHFVEVQAWRDLAEWAAE- 187
Query: 143 VEKGQQIYISGRLVSD 158
+ KG +++ GRLV+D
Sbjct: 188 LRKGDGLFVIGRLVND 203
>pdb|2FXQ|A Chain A, Single-Stranded Dna-Binding Protein From Thermus Aquaticus
pdb|2IHE|A Chain A, Crystal Structure Of Wild-Type Single-Stranded Dna Binding
Protein From Thermus Aquaticus
Length = 264
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQ-----TSWINLTFWDELAHVASQ 141
N V L+G + + ++ P G + LAV + T ++ + W ELA AS+
Sbjct: 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWASE 188
Query: 142 HVEKGQQIYISGRLVSD 158
+ KG + + GRLV+D
Sbjct: 189 -LRKGDGLLVIGRLVND 204
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-------WIN-LTFWDELAHV 138
N V LIG + + ++ P G + LA + + T S W + + A +
Sbjct: 6 NQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEM 65
Query: 139 ASQHVEKGQQIYISGRL 155
+EKGQ I++ GRL
Sbjct: 66 WGDLLEKGQLIFVEGRL 82
>pdb|2IHF|A Chain A, Crystal Structure Of Deletion Mutant Delta 228-252 R190a
Of The Single-Stranded Dna Binding Protein From Thermus
Aquaticus
Length = 239
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQ-----TSWINLTFWDELAHVASQ 141
N V L+G + + ++ P G + LAV + T ++ + W ELA AS+
Sbjct: 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWASE 188
Query: 142 HVEKGQQIYISGRLVSD 158
+ KG + + GRLV+D
Sbjct: 189 -LAKGDGLLVIGRLVND 204
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-------WIN-LTFWDELAHV 138
N V LIG + + ++ P G + LA + + T S W + + A +
Sbjct: 6 NQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEM 65
Query: 139 ASQHVEKGQQIYISGRL 155
+EKGQ I++ GRL
Sbjct: 66 WGDLLEKGQLIFVEGRL 82
>pdb|1SE8|A Chain A, Structure Of Single-Stranded Dna-Binding Protein (Ssb)
From D. Radiodurans
Length = 301
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV------RKSATQTS--WINLTFWDELAHV 138
N V ++G V E ++ P+G + +AV R+ Q +I+ T W +LA
Sbjct: 130 NEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAE- 188
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDG 165
+ + KG + I GRLV++ DG
Sbjct: 189 NXKELRKGDPVXIXGRLVNEGWTDKDG 215
>pdb|3UDG|A Chain A, Structure Of Deinococcus Radiodurans Ssb Bound To Ssdna
pdb|3UDG|B Chain B, Structure Of Deinococcus Radiodurans Ssb Bound To Ssdna
pdb|3UDG|C Chain C, Structure Of Deinococcus Radiodurans Ssb Bound To Ssdna
Length = 301
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV------RKSATQTS--WINLTFWDELAHV 138
N V ++G V E ++ P+G + +AV R+ Q +I+ T W +LA
Sbjct: 130 NEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAE- 188
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDG 165
+ + KG + I GRLV++ DG
Sbjct: 189 NMKELRKGDPVMIMGRLVNEGWTDKDG 215
>pdb|4GS3|A Chain A, Dimeric Structure Of The N-terminal Domain Of Prib Protein
From Thermoanaerobacter Tencongensis Solved Ab Initio
Length = 107
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKG 146
NTV L+G V TP+E H G+ L V + + ++ +T + L ++E G
Sbjct: 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFE--GMNLEVG 69
Query: 147 QQIYISGRLVS 157
++ I G+L S
Sbjct: 70 TRVKIEGQLRS 80
>pdb|1X3E|A Chain A, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Smegmatis
pdb|1X3E|B Chain B, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Smegmatis
pdb|1X3F|A Chain A, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Smegmatis
pdb|1X3F|B Chain B, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Smegmatis
pdb|1X3G|A Chain A, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Smegmatis
pdb|1X3G|B Chain B, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Smegmatis
Length = 165
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 88 TVHLIGVVGTPIETKHLPSGKVLA------WTRLAVRKSAT----QTSWINLTFWDELAH 137
T+ ++G + E + PSG +A R+ R+S + ++ W E A
Sbjct: 6 TITVVGNLTADPELRFTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIWREAAE 65
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDG 165
++ + +G ++ ++GRL E+ +G
Sbjct: 66 NVAESLTRGSRVIVTGRLKQRSFETREG 93
>pdb|3A5U|A Chain A, Promiscuity And Specificity In Dna Binding To Ssb:
Insights From The Structure Of The Mycobacterium
Smegmatis Ssb-Ssdna Complex
pdb|3A5U|B Chain B, Promiscuity And Specificity In Dna Binding To Ssb:
Insights From The Structure Of The Mycobacterium
Smegmatis Ssb-Ssdna Complex
Length = 130
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 88 TVHLIGVVGTPIETKHLPSGKVLA-WT-----RLAVRKSAT----QTSWINLTFWDELAH 137
T+ ++G + E + PSG +A +T R+ R+S + ++ W E A
Sbjct: 6 TITVVGNLTADPELRFTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIWREAAE 65
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDG 165
++ + +G ++ ++GRL E+ +G
Sbjct: 66 NVAESLTRGSRVIVTGRLKQRSFETREG 93
>pdb|3ULL|A Chain A, Human Mitochondrial Single-Stranded Dna Binding Protein
pdb|3ULL|B Chain B, Human Mitochondrial Single-Stranded Dna Binding Protein
pdb|1S3O|A Chain A, Human Mitochondrial Single Strand Dna Binding Protein
(Hmssb)
pdb|1S3O|B Chain B, Human Mitochondrial Single Strand Dna Binding Protein
(Hmssb)
Length = 132
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 87 NTVHLIGVVGTP-----IETKHLPSGKVLAWTRL---------AVRKSATQTSWINLT-F 131
N VHL+G VG +E K+ + LA + + + +T+W ++ F
Sbjct: 15 NRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVF 74
Query: 132 WDELAHVASQHVEKGQQIYISGRL 155
L VA Q+V+KG +IY+ G++
Sbjct: 75 RPGLRDVAYQYVKKGSRIYLEGKI 98
>pdb|2DUD|A Chain A, Crystal Structure Of Human Mitochondrial Single-Stranded
Dna-Binding Protein(Hmtssb)
pdb|2DUD|B Chain B, Crystal Structure Of Human Mitochondrial Single-Stranded
Dna-Binding Protein(Hmtssb)
Length = 133
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 87 NTVHLIGVVGTP-----IETKHLPSGKVLAWTRL---------AVRKSATQTSWINLT-F 131
N VHL+G VG +E K+ + LA + + + +T+W ++ F
Sbjct: 16 NRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVF 75
Query: 132 WDELAHVASQHVEKGQQIYISGRL 155
L VA Q+V+KG +IY+ G++
Sbjct: 76 RPGLRDVAYQYVKKGSRIYLEGKI 99
>pdb|1UE1|A Chain A, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE1|B Chain B, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE5|A Chain A, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE5|B Chain B, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE6|A Chain A, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE6|B Chain B, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE6|C Chain C, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE6|D Chain D, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE7|A Chain A, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE7|B Chain B, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE7|C Chain C, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
pdb|1UE7|D Chain D, Crystal Structure Of The Single-Stranded Dna-Binding
Protein From Mycobacterium Tuberculosis
Length = 164
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 88 TVHLIGVVGTPIETKHLPSGKVLA------WTRLAVRKSA----TQTSWINLTFWDELAH 137
T+ ++G + E + PSG +A R+ R++ + ++ W E A
Sbjct: 6 TITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAE 65
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDG 165
++ + +G ++ +SGRL E+ +G
Sbjct: 66 NVAESLTRGARVIVSGRLKQRSFETREG 93
>pdb|3EIV|A Chain A, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
pdb|3EIV|B Chain B, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
pdb|3EIV|C Chain C, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
pdb|3EIV|D Chain D, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
Length = 199
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 91 LIGVVGTPIETKHL---PSGKVLAWTRLAV--RKSATQTS--------WINLTFWDELAH 137
+I VVG ++ L PSG +A R+A R QT+ ++ + W + A
Sbjct: 6 VITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAE 65
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDG 165
++ +++G ++ + GRL E +G
Sbjct: 66 NVAESLQRGMRVIVQGRLKQRSYEDREG 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,473,408
Number of Sequences: 62578
Number of extensions: 209426
Number of successful extensions: 522
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 25
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)