Query 028557
Match_columns 207
No_of_seqs 162 out of 1139
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 22:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vdy_A SSB, single-stranded DN 100.0 4.5E-30 1.5E-34 197.6 15.6 104 84-187 3-112 (116)
2 2vw9_A Single-stranded DNA bin 100.0 4.5E-30 1.5E-34 202.9 15.1 107 85-191 1-115 (134)
3 3tqy_A Single-stranded DNA-bin 100.0 7.6E-29 2.6E-33 201.0 16.0 107 82-188 4-119 (158)
4 3ulp_A Single-strand binding p 100.0 5.1E-29 1.7E-33 194.1 13.7 103 84-186 4-122 (124)
5 3ull_A DNA binding protein; DN 100.0 2.9E-29 9.9E-34 197.5 12.0 105 82-186 10-129 (132)
6 3koj_A Uncharacterized protein 100.0 5.7E-29 2E-33 190.5 12.9 96 84-179 9-107 (108)
7 1z9f_A Single-strand binding p 100.0 5.9E-29 2E-33 200.9 13.5 106 82-187 12-125 (153)
8 1qvc_A Single stranded DNA bin 100.0 2.5E-28 8.5E-33 195.3 15.5 104 84-187 3-118 (145)
9 3lgj_A Single-stranded DNA-bin 100.0 3.8E-28 1.3E-32 199.0 14.1 105 84-188 21-139 (169)
10 3pgz_A Single-stranded DNA-bin 100.0 6.3E-28 2.1E-32 201.4 15.1 107 82-188 22-142 (193)
11 3k7u_C MP18 RNA editing comple 99.9 1.1E-27 3.7E-32 192.6 12.4 104 82-187 2-120 (148)
12 3afp_A Single-stranded DNA-bin 99.9 2.6E-27 8.9E-32 193.7 12.1 102 84-185 2-117 (168)
13 4dam_A Single-stranded DNA-bin 99.9 6.9E-27 2.4E-31 183.7 13.4 99 85-185 14-122 (128)
14 1txy_A Primosomal replication 99.9 1.7E-27 5.7E-32 180.5 9.4 96 85-184 1-103 (104)
15 1eqq_A Single stranded DNA bin 99.9 1.1E-27 3.8E-32 197.7 8.4 104 84-187 4-119 (178)
16 4gs3_A Single-stranded DNA-bin 99.9 7.8E-27 2.7E-31 178.3 10.7 94 87-182 12-106 (107)
17 2fxq_A Single-strand binding p 99.9 3.4E-26 1.2E-30 198.3 15.5 107 81-188 123-234 (264)
18 3eiv_A Single-stranded DNA-bin 99.9 8.2E-26 2.8E-30 189.5 14.5 98 83-180 1-108 (199)
19 1v1q_A Primosomal replication 99.9 2.8E-26 9.4E-31 181.7 10.9 100 84-187 17-123 (134)
20 1se8_A Single-strand binding p 99.9 2.3E-25 8E-30 197.0 15.5 105 82-186 1-114 (301)
21 3k81_C MP18 RNA editing comple 99.9 7.5E-26 2.6E-30 184.4 10.0 110 74-186 11-135 (164)
22 1se8_A Single-strand binding p 99.9 1.8E-25 6.1E-30 197.7 12.7 106 81-187 124-237 (301)
23 2fxq_A Single-strand binding p 99.9 3.4E-25 1.2E-29 192.0 11.4 101 84-185 3-111 (264)
24 4dni_A Fusion protein of RNA-e 99.9 5.2E-23 1.8E-27 178.4 13.5 97 83-182 143-255 (257)
25 3fhw_A Primosomal replication 99.9 4E-23 1.4E-27 159.6 11.3 95 86-187 1-102 (115)
26 3k8a_A Putative primosomal rep 99.9 3.3E-23 1.1E-27 157.2 9.9 90 85-182 6-102 (103)
27 3en2_A Probable primosomal rep 99.8 1.1E-20 3.9E-25 142.8 7.7 77 86-163 2-85 (101)
28 3stb_C RNA-editing complex pro 99.8 4.7E-19 1.6E-23 141.8 14.3 94 79-174 37-136 (148)
29 4dni_A Fusion protein of RNA-e 99.8 4.7E-19 1.6E-23 153.6 11.0 95 84-182 28-128 (257)
30 4dka_C RNA-editing complex pro 97.6 0.00037 1.3E-08 52.3 9.3 75 87-163 4-81 (105)
31 3e0e_A Replication protein A; 96.9 0.0087 3E-07 43.7 9.4 79 87-182 12-94 (97)
32 2k50_A Replication factor A re 96.7 0.0046 1.6E-07 46.0 6.7 68 87-160 17-88 (115)
33 3dm3_A Replication factor A; p 96.4 0.01 3.5E-07 44.2 7.3 82 87-184 15-100 (105)
34 1o7i_A SSB, SSO2364, single st 95.9 0.039 1.3E-06 41.4 8.2 64 85-157 11-78 (119)
35 2k75_A Uncharacterized protein 95.6 0.083 2.8E-06 39.1 8.8 62 84-157 11-75 (106)
36 1ynx_A Replication factor-A pr 95.5 0.026 8.8E-07 42.2 5.7 65 84-153 12-79 (114)
37 3f2b_A DNA-directed DNA polyme 95.0 0.32 1.1E-05 49.2 13.5 87 85-184 16-104 (1041)
38 2hql_A Hypothetical protein Mg 93.6 1.5 5.2E-05 32.0 11.0 89 83-178 5-96 (110)
39 3au7_A TIAS, putative uncharac 91.6 1.5 5.1E-05 39.9 10.9 79 84-184 282-362 (402)
40 3kdf_D Replication protein A 3 91.3 1 3.4E-05 34.1 8.2 85 79-183 24-111 (132)
41 4gop_B Putative uncharacterize 89.2 1.6 5.4E-05 33.1 7.7 86 78-183 28-116 (136)
42 1jmc_A Protein (replication pr 89.2 0.97 3.3E-05 37.2 7.0 65 84-153 16-83 (246)
43 1eov_A ASPRS, aspartyl-tRNA sy 88.6 4.9 0.00017 37.0 12.0 88 87-185 37-131 (487)
44 2hpi_A DNA polymerase III alph 88.6 0.75 2.5E-05 47.3 6.9 81 87-183 1043-1123(1220)
45 2kbn_A Conserved protein; nucl 88.6 4.6 0.00016 29.5 9.6 62 85-157 14-76 (109)
46 4gop_C Putative uncharacterize 87.7 0.95 3.3E-05 40.9 6.4 65 85-154 12-79 (444)
47 3kf8_A Protein STN1; OB fold; 87.2 2.7 9.2E-05 35.2 8.4 106 78-184 77-185 (220)
48 1wjj_A Hypothetical protein F2 83.8 3.3 0.00011 32.3 6.9 66 82-156 22-100 (145)
49 3bju_A Lysyl-tRNA synthetase; 83.3 11 0.00037 35.1 11.4 80 87-184 56-141 (521)
50 2vl6_A SSO MCM N-TER, minichro 82.3 3.3 0.00011 34.8 6.9 57 123-183 209-267 (268)
51 2pi2_A Replication protein A 3 82.1 6 0.00021 33.4 8.5 81 82-182 67-150 (270)
52 2xgt_A Asparaginyl-tRNA synthe 81.0 14 0.00046 33.5 10.9 83 87-183 12-96 (435)
53 3a74_A Lysyl-tRNA synthetase; 78.8 20 0.0007 33.0 11.5 78 88-184 58-139 (493)
54 3kf6_A Protein STN1; OB fold, 77.6 20 0.00067 28.2 9.6 85 81-184 42-129 (159)
55 3nem_A Aspartyl-tRNA synthetas 76.4 33 0.0011 31.0 12.1 82 87-185 17-102 (438)
56 1e1o_A Lysyl-tRNA synthetase, 75.5 24 0.00082 32.6 11.0 78 88-184 66-148 (504)
57 1x54_A Asparaginyl-tRNA synthe 74.9 33 0.0011 31.0 11.6 81 87-184 17-101 (434)
58 4ex5_A Lysine--tRNA ligase; st 73.0 53 0.0018 30.6 12.7 79 87-184 87-169 (529)
59 1wyd_A Hypothetical aspartyl-t 72.9 31 0.0011 31.1 10.9 81 87-184 17-98 (429)
60 3m4p_A Ehasnrs, asparaginyl-tR 72.9 23 0.00079 32.3 10.1 88 87-184 31-122 (456)
61 3i7f_A Aspartyl-tRNA synthetas 72.7 18 0.00063 33.9 9.5 87 87-185 63-154 (548)
62 1n9w_A Aspartyl-tRNA synthetas 72.2 37 0.0013 30.5 11.2 74 87-184 14-88 (422)
63 1l0w_A Aspartyl-tRNA synthetas 71.6 12 0.00039 35.4 7.9 85 88-185 18-104 (580)
64 1jmc_A Protein (replication pr 71.0 11 0.00039 30.6 7.0 67 88-160 140-210 (246)
65 4hik_A Protection of telomeres 63.8 5.3 0.00018 31.1 3.2 59 86-152 14-92 (143)
66 1ltl_A DNA replication initiat 63.2 10 0.00035 32.0 5.3 54 124-184 197-250 (279)
67 1c0a_A Aspartyl tRNA synthetas 62.2 24 0.00083 33.2 8.1 83 88-185 17-106 (585)
68 3ebe_A Protein MCM10 homolog; 53.8 11 0.00038 30.8 3.7 73 88-166 57-129 (200)
69 1xjv_A Protection of telomeres 50.3 22 0.00076 30.1 5.2 70 86-160 15-84 (294)
70 4gop_C Putative uncharacterize 47.6 19 0.00064 32.3 4.6 62 88-154 135-204 (444)
71 2wkd_A ORF34P2; SSB, single-st 35.0 85 0.0029 23.3 5.5 55 106-170 23-77 (119)
72 1gm5_A RECG; helicase, replica 31.1 33 0.0011 33.3 3.6 61 88-157 167-229 (780)
73 4hsp_A Hypothetical protein; P 29.9 79 0.0027 24.7 5.0 84 87-182 55-146 (150)
74 4ah6_A Aspartate--tRNA ligase, 28.9 47 0.0016 31.6 4.1 85 87-185 25-114 (617)
75 2k50_A Replication factor A re 25.2 1.3E+02 0.0043 21.3 5.1 34 142-175 12-49 (115)
76 1qzg_A Protection of telomeres 24.9 92 0.0031 25.1 4.7 72 87-160 43-117 (187)
77 1tvc_A Methane monooxygenase c 20.9 63 0.0022 25.7 3.0 28 133-160 85-112 (250)
78 4eh1_A Flavohemoprotein; struc 20.8 1.1E+02 0.0036 24.0 4.3 28 133-160 83-110 (243)
79 1xjv_A Protection of telomeres 20.2 1.1E+02 0.0039 25.6 4.6 27 126-153 212-238 (294)
No 1
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.97 E-value=4.5e-30 Score=197.62 Aligned_cols=104 Identities=22% Similarity=0.390 Sum_probs=91.5
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC------CCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeee
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT------QTSWINLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~------~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~ 157 (207)
.|||+|+|+|+|++||++|++++|.++++|+||+++.+. +++||+|++||++|+.+.++|+||++|+|+|+|++
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 599999999999999999999999999999999998652 68999999999999999999999999999999999
Q ss_pred eeeEcCCCcEEEEEEEEEEEEEEeeCCCCC
Q 028557 158 DVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (207)
Q Consensus 158 ~~~~dkdG~~~~~~eIva~~I~~L~~k~~~ 187 (207)
+.|+|+||++++.++|+|++|+||++++..
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~~~~ 112 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPKPRE 112 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC-----
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 999999999999999999999999877643
No 2
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.97 E-value=4.5e-30 Score=202.90 Aligned_cols=107 Identities=24% Similarity=0.408 Sum_probs=95.7
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC--------CCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEee
Q 028557 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--------QTSWINLTFWDELAHVASQHVEKGQQIYISGRLV 156 (207)
Q Consensus 85 ~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~--------~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~ 156 (207)
|||+|+|+|+|++||++|++++|.++++|+||+++++. +++||+|++||++|+.+.++|+||++|+|+|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEE
Confidence 69999999999999999999999999999999997531 6889999999999999999999999999999999
Q ss_pred eeeeEcCCCcEEEEEEEEEEEEEEeeCCCCCCCCC
Q 028557 157 SDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSSY 191 (207)
Q Consensus 157 ~~~~~dkdG~~~~~~eIva~~I~~L~~k~~~~~~~ 191 (207)
++.|+|+||++++.++|+|++|.||+++....+++
T Consensus 81 ~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~~~~~~ 115 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQAN 115 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECCCC-------
T ss_pred eeeEECCCCCEEEEEEEEEEEEEEccCCccccccc
Confidence 99999999999999999999999999877665544
No 3
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.96 E-value=7.6e-29 Score=201.04 Aligned_cols=107 Identities=23% Similarity=0.433 Sum_probs=96.0
Q ss_pred CcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---------CCeEEEEEEEchHHHHHHHhcCCCCEEEEE
Q 028557 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDELAHVASQHVEKGQQIYIS 152 (207)
Q Consensus 82 ~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~---------~t~wi~V~awgk~Ae~~~~~LkKGd~V~Ve 152 (207)
|...||+|+|+|+|++||++|++++|+++++|+||+++.+. +++||+|++||++|+.+.++|+||++|+|+
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 55689999999999999999999999999999999987531 489999999999999999999999999999
Q ss_pred EEeeeeeeEcCCCcEEEEEEEEEEEEEEeeCCCCCC
Q 028557 153 GRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSM 188 (207)
Q Consensus 153 GrL~~~~~~dkdG~~~~~~eIva~~I~~L~~k~~~~ 188 (207)
|+|+++.|+|+||++++.++|+|++|.||+++..++
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~~~~ 119 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNRGGGN 119 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC------
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCCcccC
Confidence 999999999999999999999999999999887654
No 4
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.96 E-value=5.1e-29 Score=194.07 Aligned_cols=103 Identities=22% Similarity=0.428 Sum_probs=92.7
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC---------CCCeEEEEEEEc-hHHHHHHHhcCCCCEEEEEE
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWD-ELAHVASQHVEKGQQIYISG 153 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~---------~~t~wi~V~awg-k~Ae~~~~~LkKGd~V~VeG 153 (207)
.|||+|+|+|+|++||++|++++|+++++|+||+++.+ ++++||+|++|| ++|+.+.++|+||++|+|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE
Confidence 58999999999999999999999999999999999753 168999999999 89999999999999999999
Q ss_pred EeeeeeeEcC--CCcEEEEEEEEEE----EEEEeeCCCC
Q 028557 154 RLVSDVVESG--DGQQQTYYKVVVQ----QLNFVERSSP 186 (207)
Q Consensus 154 rL~~~~~~dk--dG~~~~~~eIva~----~I~~L~~k~~ 186 (207)
+|+++.|+|+ ||++++.++|+|+ +|.||++++.
T Consensus 84 ~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~ 122 (124)
T 3ulp_A 84 SLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRN 122 (124)
T ss_dssp EEEEEEECC----CCCEEEEEEEECTTTCEEEECC----
T ss_pred EEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCC
Confidence 9999999999 9999999999998 9999998764
No 5
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.96 E-value=2.9e-29 Score=197.50 Aligned_cols=105 Identities=21% Similarity=0.350 Sum_probs=94.7
Q ss_pred CcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC--------------CCeEEEEEEEc-hHHHHHHHhcCCC
Q 028557 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--------------QTSWINLTFWD-ELAHVASQHVEKG 146 (207)
Q Consensus 82 ~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~--------------~t~wi~V~awg-k~Ae~~~~~LkKG 146 (207)
|..+||+|+|+|||++||++|++++|.++++|+||+++.+. .++||+|++|| ++|+.+.++|+||
T Consensus 10 m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred hhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 55689999999999999999999999999999999998542 58899999999 5999999999999
Q ss_pred CEEEEEEEeeeeeeEcCCCcEEEEEEEEEEEEEEeeCCCC
Q 028557 147 QQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSP 186 (207)
Q Consensus 147 d~V~VeGrL~~~~~~dkdG~~~~~~eIva~~I~~L~~k~~ 186 (207)
++|+|+|+|+++.|+|+||++++.++|+|++|.||++++.
T Consensus 90 ~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~k 129 (132)
T 3ull_A 90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTK 129 (132)
T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC-----
T ss_pred CEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCCc
Confidence 9999999999999999999999999999999999987654
No 6
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.96 E-value=5.7e-29 Score=190.49 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=81.6
Q ss_pred CCccEEEEEEEECCCceEEEcCCC-cEEEEEEEEEecCC--CCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeee
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSG-KVLAWTRLAVRKSA--TQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVV 160 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG-~~va~f~LAv~r~~--~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~ 160 (207)
..||.|+|+|||++|||+|++++| .++++|+||+++.. ++++||+|++||++||.+.++|+||++|+|+|+|+++.|
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y 88 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSL 88 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC-
T ss_pred cccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeE
Confidence 369999999999999999999988 89999999999432 479999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEEEEEEEEEE
Q 028557 161 ESGDGQQQTYYKVVVQQLN 179 (207)
Q Consensus 161 ~dkdG~~~~~~eIva~~I~ 179 (207)
+|+||++++.++|+|++|.
T Consensus 89 ~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 89 LKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp -------CCEEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEEEEE
Confidence 9999999999999999985
No 7
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=5.9e-29 Score=200.85 Aligned_cols=106 Identities=21% Similarity=0.320 Sum_probs=86.0
Q ss_pred CcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEec-CCC-------CCeEEEEEEEchHHHHHHHhcCCCCEEEEEE
Q 028557 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRK-SAT-------QTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (207)
Q Consensus 82 ~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r-~~~-------~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeG 153 (207)
-|.+||+|+|+|||++||++|++++|+++++|+||+++ .+. +++||+|++||++|+.+.++|+||++|+|+|
T Consensus 12 ~~~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 12 HMSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp CCSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred cccceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEE
Confidence 45689999999999999999999999999999999998 542 2899999999999999999999999999999
Q ss_pred EeeeeeeEcCCCcEEEEEEEEEEEEEEeeCCCCC
Q 028557 154 RLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (207)
Q Consensus 154 rL~~~~~~dkdG~~~~~~eIva~~I~~L~~k~~~ 187 (207)
+|+++.|+|++|++++.++|+|++|.+|++++..
T Consensus 92 rL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~~ 125 (153)
T 1z9f_A 92 EMRMRRWETPTGEKRVSPEVVANVVRFMDRKPAE 125 (153)
T ss_dssp EEEEEC-------CCCEEEEEEEEEEECC-----
T ss_pred EEEeceEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 9999999999999999999999999999977654
No 8
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.96 E-value=2.5e-28 Score=195.26 Aligned_cols=104 Identities=30% Similarity=0.436 Sum_probs=97.9
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC---------CCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEE
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~---------~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGr 154 (207)
.|||+|+|+|+|++||++|++++|.++++|+||+++.+ ++++||+|++||++|+.+.++|+||++|+|+|+
T Consensus 3 ~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 3 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp CCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred CceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEE
Confidence 58999999999999999999999999999999999854 258999999999999999999999999999999
Q ss_pred eeeeeeEcCCCcEEEEEEE---EEEEEEEeeCCCCC
Q 028557 155 LVSDVVESGDGQQQTYYKV---VVQQLNFVERSSPS 187 (207)
Q Consensus 155 L~~~~~~dkdG~~~~~~eI---va~~I~~L~~k~~~ 187 (207)
|+++.|+|+||++++.++| ++++|.||++++..
T Consensus 83 L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred EEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcC
Confidence 9999999999999999999 99999999987653
No 9
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.95 E-value=3.8e-28 Score=199.04 Aligned_cols=105 Identities=26% Similarity=0.464 Sum_probs=86.1
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC---------CCCeEEEEEEEch-HHHHHHHhcCCCCEEEEEE
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDE-LAHVASQHVEKGQQIYISG 153 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~---------~~t~wi~V~awgk-~Ae~~~~~LkKGd~V~VeG 153 (207)
.|||+|+|+|||++||++|++++|+++++|+||+++++ ++++||+|++||+ +|+.+.++|+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999999999999999864 1589999999999 9999999999999999999
Q ss_pred EeeeeeeEcCCCcEEEEEEEEE----EEEEEeeCCCCCC
Q 028557 154 RLVSDVVESGDGQQQTYYKVVV----QQLNFVERSSPSM 188 (207)
Q Consensus 154 rL~~~~~~dkdG~~~~~~eIva----~~I~~L~~k~~~~ 188 (207)
+|+++.|+|+||++++.++|+| ++|.||++++...
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~~ 139 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQS 139 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC-----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCccc
Confidence 9999999999999999999998 5999999887654
No 10
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.95 E-value=6.3e-28 Score=201.42 Aligned_cols=107 Identities=30% Similarity=0.473 Sum_probs=94.5
Q ss_pred CcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---------CCeEEEEEEEch-HHHHHHHhcCCCCEEEE
Q 028557 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDE-LAHVASQHVEKGQQIYI 151 (207)
Q Consensus 82 ~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~---------~t~wi~V~awgk-~Ae~~~~~LkKGd~V~V 151 (207)
|...||+|+|+|||++||++|++++|++|++|+||+++.+. +++||+|++|++ +|+.+.++|+||++|+|
T Consensus 22 Ma~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~V 101 (193)
T 3pgz_A 22 MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYI 101 (193)
T ss_dssp -CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred HhhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEE
Confidence 44579999999999999999999999999999999997531 489999999996 99999999999999999
Q ss_pred EEEeeeeeeEcCCCcEEEEEEEEEE----EEEEeeCCCCCC
Q 028557 152 SGRLVSDVVESGDGQQQTYYKVVVQ----QLNFVERSSPSM 188 (207)
Q Consensus 152 eGrL~~~~~~dkdG~~~~~~eIva~----~I~~L~~k~~~~ 188 (207)
+|+|+++.|+|+||++++.++|+|+ +|.||+++...+
T Consensus 102 eGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~~ 142 (193)
T 3pgz_A 102 EGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAAG 142 (193)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC------
T ss_pred EEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCCC
Confidence 9999999999999999999999999 799999887654
No 11
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.95 E-value=1.1e-27 Score=192.59 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=87.6
Q ss_pred CcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC---------CCCeEEEEEEEchH-HHHHHHhcCCCCEEEE
Q 028557 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDEL-AHVASQHVEKGQQIYI 151 (207)
Q Consensus 82 ~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~---------~~t~wi~V~awgk~-Ae~~~~~LkKGd~V~V 151 (207)
||..||+|+|+|||++||+ |++ +|+++++|+||+++++ ++++||+|++||++ |+.+.++|+||++|+|
T Consensus 2 M~~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~V 79 (148)
T 3k7u_C 2 MSKSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148)
T ss_dssp ---CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred CcccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEE
Confidence 6788999999999999999 999 9999999999999764 36899999999997 9999999999999999
Q ss_pred EEEeeeeeeEcCCCcEEEEEEEEEE-----EEEEeeCCCCC
Q 028557 152 SGRLVSDVVESGDGQQQTYYKVVVQ-----QLNFVERSSPS 187 (207)
Q Consensus 152 eGrL~~~~~~dkdG~~~~~~eIva~-----~I~~L~~k~~~ 187 (207)
+|+|+++.|+|+||++++.++|++- .+.+|+.++..
T Consensus 80 eGrL~~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~~ 120 (148)
T 3k7u_C 80 NGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRT 120 (148)
T ss_dssp EEEEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC--
T ss_pred EEEEEeeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCCC
Confidence 9999999999999999999999975 69999877643
No 12
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.94 E-value=2.6e-27 Score=193.75 Aligned_cols=102 Identities=19% Similarity=0.362 Sum_probs=91.4
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC----------CCCeEEEEEEEchHHHHHHHhcCCCCEEEEEE
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA----------TQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~----------~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeG 153 (207)
.+||+|+|+|||++||++|++++|+++++|+||+++++ .+++||+|++|+++|+.+.++|+||++|+|+|
T Consensus 2 a~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 2 AGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTG 81 (168)
T ss_dssp -CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred CccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEE
Confidence 36899999999999999999999999999999998642 15899999999999999999999999999999
Q ss_pred EeeeeeeEcCCCcEEEEEEEEEE----EEEEeeCCC
Q 028557 154 RLVSDVVESGDGQQQTYYKVVVQ----QLNFVERSS 185 (207)
Q Consensus 154 rL~~~~~~dkdG~~~~~~eIva~----~I~~L~~k~ 185 (207)
+|+++.|+|+||++++.++|+|+ +|.||+.+.
T Consensus 82 rL~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~ 117 (168)
T 3afp_A 82 RLKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKV 117 (168)
T ss_dssp EEEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEE
T ss_pred EEEeeeEECCCCcEEEEEEEEEEEeecCEEEecccc
Confidence 99999999999999999999887 677886543
No 13
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.94 E-value=6.9e-27 Score=183.66 Aligned_cols=99 Identities=21% Similarity=0.198 Sum_probs=91.5
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC----------CCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEE
Q 028557 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA----------TQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (207)
Q Consensus 85 ~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~----------~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGr 154 (207)
.+|+|+|+|+|++||++|++++| ++++|+||+++.+ .+++||+|++||++|+.+.++|+||++|+|+|+
T Consensus 14 ~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 92 (128)
T 4dam_A 14 NEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGR 92 (128)
T ss_dssp CCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEE
Confidence 48999999999999999999999 9999999999753 168999999999999999999999999999999
Q ss_pred eeeeeeEcCCCcEEEEEEEEEEEEEEeeCCC
Q 028557 155 LVSDVVESGDGQQQTYYKVVVQQLNFVERSS 185 (207)
Q Consensus 155 L~~~~~~dkdG~~~~~~eIva~~I~~L~~k~ 185 (207)
|+++.| |+||++++.++|+|++|..--...
T Consensus 93 L~~~~~-dkdG~~r~~~ev~a~~vg~dL~~~ 122 (128)
T 4dam_A 93 LKVRTD-VREGQSRTSADIDAVAIGHDLARG 122 (128)
T ss_dssp EEEEEE-EETTEEEEEEEEEEEEEEECTTSS
T ss_pred EEEeEE-cCCCCEEEEEEEEEEEEEeccCcc
Confidence 999999 899999999999999998754433
No 14
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.94 E-value=1.7e-27 Score=180.52 Aligned_cols=96 Identities=17% Similarity=0.257 Sum_probs=80.8
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeE-------EEEEEEchHHHHHHHhcCCCCEEEEEEEeee
Q 028557 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSW-------INLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (207)
Q Consensus 85 ~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~w-------i~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~ 157 (207)
|||+|+|+|+|++||++|++++|.++++|+||++....+++| |+|++||++|+.+.++|+||++|+|+|+|++
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~ 80 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 80 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEe
Confidence 789999999999999999999999999999999755556788 9999999999999999999999999999999
Q ss_pred eeeEcCCCcEEEEEEEEEEEEEEeeCC
Q 028557 158 DVVESGDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 158 ~~~~dkdG~~~~~~eIva~~I~~L~~k 184 (207)
+ +|+||+++ ++|+|++|++|+++
T Consensus 81 ~--~~~~G~~r--~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 81 H--KAKNGLSK--MVLHAEQIELIDSG 103 (104)
T ss_dssp ----------C--CEEEEEEEEEC---
T ss_pred c--cCCCCCEE--EEEEEEEEEECcCC
Confidence 9 68999988 89999999999754
No 15
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.94 E-value=1.1e-27 Score=197.67 Aligned_cols=104 Identities=30% Similarity=0.435 Sum_probs=95.4
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---------CCeEEEEEEEchHHHHHHHhcCCCCEEEEEEE
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~---------~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGr 154 (207)
.|||+|+|+|||++||++|++++|+++++|+||+++.+. +++||+|++||++|+.+.++|+||++|+|+|+
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEE
Confidence 589999999999999999999999999999999998642 48899999999999999999999999999999
Q ss_pred eeeeeeEcCCCcEEEEEEE---EEEEEEEeeCCCCC
Q 028557 155 LVSDVVESGDGQQQTYYKV---VVQQLNFVERSSPS 187 (207)
Q Consensus 155 L~~~~~~dkdG~~~~~~eI---va~~I~~L~~k~~~ 187 (207)
|+++.|+|+||++++.++| ++++|.||+.+...
T Consensus 84 L~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~~ 119 (178)
T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 119 (178)
T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCCEECSCC----
T ss_pred EEeeeEECCCCCEEEEEEEeeeecCeEEEccccCCC
Confidence 9999999999999999999 99999999977653
No 16
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.94 E-value=7.8e-27 Score=178.33 Aligned_cols=94 Identities=26% Similarity=0.361 Sum_probs=82.4
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeee-eeeEcCCC
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVS-DVVESGDG 165 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~-~~~~dkdG 165 (207)
|+|+|+|||++||+++++++|..+++|+|||+|.++++|||+|++|+++|+.+. +.||++|.|+|+|++ +.|+++||
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~--~~kG~~v~v~G~lrsy~~~~~~dG 89 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMN--LEVGTRVKIEGQLRSYNRKSPEEG 89 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCC--CCTTCEEEEEEEEEEEECC-----
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHh--hcCCCEEEEEEEEEecceEECCCC
Confidence 999999999999999999999999999999999999999999999999999875 459999999999997 78999999
Q ss_pred cEEEEEEEEEEEEEEee
Q 028557 166 QQQTYYKVVVQQLNFVE 182 (207)
Q Consensus 166 ~~~~~~eIva~~I~~L~ 182 (207)
++++.++|+|++|+||+
T Consensus 90 ~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 90 KNKLILTVFARDISVVP 106 (107)
T ss_dssp ---EEEEEEEEEEEEEC
T ss_pred CEEEEEEEEEEEEEEcc
Confidence 99999999999999996
No 17
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.94 E-value=3.4e-26 Score=198.29 Aligned_cols=107 Identities=26% Similarity=0.386 Sum_probs=95.3
Q ss_pred cCcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-----CCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEe
Q 028557 81 WDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-----TQTSWINLTFWDELAHVASQHVEKGQQIYISGRL 155 (207)
Q Consensus 81 ~~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~-----~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL 155 (207)
.|+.+||+|+|+|+|++||++|++++|+++++|+||+++++ ++++||+|++||++|+.+. +|+||++|+|+|+|
T Consensus 123 ~m~~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l 201 (264)
T 2fxq_A 123 RLRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRL 201 (264)
T ss_dssp --CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEE
T ss_pred ccccceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEE
Confidence 46668999999999999999999999999999999999875 3689999999999999999 99999999999999
Q ss_pred eeeeeEcCCCcEEEEEEEEEEEEEEeeCCCCCC
Q 028557 156 VSDVVESGDGQQQTYYKVVVQQLNFVERSSPSM 188 (207)
Q Consensus 156 ~~~~~~dkdG~~~~~~eIva~~I~~L~~k~~~~ 188 (207)
+++.|+|+||++++.++|+|++|.||++++...
T Consensus 202 ~~~~~~~~dG~~~~~~ev~a~~i~~l~~~~~~~ 234 (264)
T 2fxq_A 202 VNDSWTSSSGERRFQTRVEALRLERPTRGPAQA 234 (264)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEECCCC-----
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEECccccccc
Confidence 999999999999999999999999999876654
No 18
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.93 E-value=8.2e-26 Score=189.46 Aligned_cols=98 Identities=19% Similarity=0.372 Sum_probs=81.7
Q ss_pred cCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecC-C---------CCCeEEEEEEEchHHHHHHHhcCCCCEEEEE
Q 028557 83 KELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS-A---------TQTSWINLTFWDELAHVASQHVEKGQQIYIS 152 (207)
Q Consensus 83 ~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~-~---------~~t~wi~V~awgk~Ae~~~~~LkKGd~V~Ve 152 (207)
|..+|+|+|+|||++||++|++++|++|++|+||++++ + .+++||+|++|+++|+.+.++|+||++|+|+
T Consensus 1 Ma~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~Ve 80 (199)
T 3eiv_A 1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQ 80 (199)
T ss_dssp ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred CCcccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence 34689999999999999999999999999999999843 2 2699999999999999999999999999999
Q ss_pred EEeeeeeeEcCCCcEEEEEEEEEEEEEE
Q 028557 153 GRLVSDVVESGDGQQQTYYKVVVQQLNF 180 (207)
Q Consensus 153 GrL~~~~~~dkdG~~~~~~eIva~~I~~ 180 (207)
|+|+++.|+|+||++++.++|+|++|..
T Consensus 81 GrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 81 GRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 9999999999999999999999999886
No 19
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.93 E-value=2.8e-26 Score=181.66 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=89.0
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-------CCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEee
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-------TQTSWINLTFWDELAHVASQHVEKGQQIYISGRLV 156 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~-------~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~ 156 (207)
.|||+|+|+|+|++||++|++++|.++++|+||+++.. +.++||+|++||++|+.+.+||+||++|+|+|+|+
T Consensus 17 ~M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~ 96 (134)
T 1v1q_A 17 LMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFIS 96 (134)
T ss_dssp GCCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEE
T ss_pred cceeEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEE
Confidence 36699999999999999999999999999999997532 13579999999999999999999999999999999
Q ss_pred eeeeEcCCCcEEEEEEEEEEEEEEeeCCCCC
Q 028557 157 SDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (207)
Q Consensus 157 ~~~~~dkdG~~~~~~eIva~~I~~L~~k~~~ 187 (207)
++ +|+||++++.+ +|++|+||+++++.
T Consensus 97 tr--~~k~G~kr~~~--~a~~i~~l~~k~~~ 123 (134)
T 1v1q_A 97 CH--KAKNGLSKMVL--HAEQIELIDSVDKL 123 (134)
T ss_dssp EE--CTTTTSCEEEE--EEEEEEETTSCSCC
T ss_pred EE--ECCCCCEEEEE--EEEEEEECcCCCCc
Confidence 88 37899988765 89999999876654
No 20
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.93 E-value=2.3e-25 Score=196.99 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=91.8
Q ss_pred CcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC--------CCeEEEEEEEchHHHHHHHh-cCCCCEEEEE
Q 028557 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--------QTSWINLTFWDELAHVASQH-VEKGQQIYIS 152 (207)
Q Consensus 82 ~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~--------~t~wi~V~awgk~Ae~~~~~-LkKGd~V~Ve 152 (207)
|..+||+|+|+|+|++||++|++++|.++++|+||+++++. .++||+|++||++|+.+.++ |+||++|+|+
T Consensus 1 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~Ve 80 (301)
T 1se8_A 1 MARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVE 80 (301)
T ss_dssp --CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEE
T ss_pred CCCceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEE
Confidence 44589999999999999999999999999999999987532 47899999999999999999 9999999999
Q ss_pred EEeeeeeeEcCCCcEEEEEEEEEEEEEEeeCCCC
Q 028557 153 GRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSP 186 (207)
Q Consensus 153 GrL~~~~~~dkdG~~~~~~eIva~~I~~L~~k~~ 186 (207)
|+|+++.|+|+||++++.++|+|++|+||+.++.
T Consensus 81 G~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 114 (301)
T 1se8_A 81 GTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPE 114 (301)
T ss_dssp EEEEEEEEC-----CEEEEEEEEEEEEECSSCCC
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEeecccc
Confidence 9999999999999999999999999999987653
No 21
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.93 E-value=7.5e-26 Score=184.37 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=88.0
Q ss_pred CCCCccccCcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC---------CCCeEEEEEEEchH-HHHHHHhc
Q 028557 74 PKPPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDEL-AHVASQHV 143 (207)
Q Consensus 74 ~rp~~v~~~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~---------~~t~wi~V~awgk~-Ae~~~~~L 143 (207)
.||. +..+...||+|+|+|||++|||+|+++ ..|++|+||+++++ .+++||+|++||++ |+.+.+||
T Consensus 11 ~r~~-~~r~a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL 87 (164)
T 3k81_C 11 LQQT-FMRCCKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKV 87 (164)
T ss_dssp ----------CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred cCch-hhHHhcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhc
Confidence 3443 667788999999999999999999998 79999999999532 35999999999999 99999999
Q ss_pred CCCCEEEEEEEeeeeeeEcCCCcEEE-EEEEEEE----EEEEeeCCCC
Q 028557 144 EKGQQIYISGRLVSDVVESGDGQQQT-YYKVVVQ----QLNFVERSSP 186 (207)
Q Consensus 144 kKGd~V~VeGrL~~~~~~dkdG~~~~-~~eIva~----~I~~L~~k~~ 186 (207)
+||++|+|+|+|+++.|+|++|++++ ...|+|. .+.+|+.++.
T Consensus 88 ~KGs~V~VeGrL~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~ 135 (164)
T 3k81_C 88 KEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 135 (164)
T ss_dssp CTTCEEEECCEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC---
T ss_pred CCCCEEEEEEEEEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCC
Confidence 99999999999999999999987665 4455565 7999987654
No 22
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.93 E-value=1.8e-25 Score=197.72 Aligned_cols=106 Identities=24% Similarity=0.394 Sum_probs=90.6
Q ss_pred cCcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC--------CCCeEEEEEEEchHHHHHHHhcCCCCEEEEE
Q 028557 81 WDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA--------TQTSWINLTFWDELAHVASQHVEKGQQIYIS 152 (207)
Q Consensus 81 ~~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~--------~~t~wi~V~awgk~Ae~~~~~LkKGd~V~Ve 152 (207)
.|+.|||+|+|+|+|++||++|++++|+++++|+||+++.+ ++++||+|++||++|+.+.+ |+||++|.|+
T Consensus 124 rm~~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~ 202 (301)
T 1se8_A 124 RMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIM 202 (301)
T ss_dssp EEETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEE
T ss_pred chhcceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEE
Confidence 55679999999999999999999999999999999999753 25889999999999999999 9999999999
Q ss_pred EEeeeeeeEcCCCcEEEEEEEEEEEEEEeeCCCCC
Q 028557 153 GRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (207)
Q Consensus 153 GrL~~~~~~dkdG~~~~~~eIva~~I~~L~~k~~~ 187 (207)
|+|+++.|+|+||++++.++|+|++|+||+.++..
T Consensus 203 GrL~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~~ 237 (301)
T 1se8_A 203 GRLVNEGWTDKDGNKRNSTRVEATRVEALARGAGN 237 (301)
T ss_dssp EEEEEEECC------CEEEEEEEEEEEECCC----
T ss_pred EEEeeeeEECCCCcEEEEEEEEEEEEEEeccCCCC
Confidence 99999999999999999999999999999976654
No 23
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.92 E-value=3.4e-25 Score=191.97 Aligned_cols=101 Identities=24% Similarity=0.300 Sum_probs=86.0
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC--------CCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEe
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--------QTSWINLTFWDELAHVASQHVEKGQQIYISGRL 155 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~--------~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL 155 (207)
.+||+|+|+|+|++||++|++++|.++++|+||+++.+. .++||+|++||++|+.+.++|+||++|+|+|+|
T Consensus 3 ~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L 82 (264)
T 2fxq_A 3 RGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRL 82 (264)
T ss_dssp CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEE
T ss_pred CceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEE
Confidence 479999999999999999999999999999999998531 478999999999999999999999999999999
Q ss_pred eeeeeEcCCCcEEEEEEEEEEEEEEeeCCC
Q 028557 156 VSDVVESGDGQQQTYYKVVVQQLNFVERSS 185 (207)
Q Consensus 156 ~~~~~~dkdG~~~~~~eIva~~I~~L~~k~ 185 (207)
+++.|+| ||++++.++|+|++|.+|+.+.
T Consensus 83 ~~~~~~~-dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 83 EYRQWEK-DGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEC----------CCEEEEEEEEEECCCC-
T ss_pred EeeeEEe-CCEEEEEEEEEEEEEEECcCCc
Confidence 9999998 9999999999999999998765
No 24
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.89 E-value=5.2e-23 Score=178.38 Aligned_cols=97 Identities=23% Similarity=0.335 Sum_probs=86.9
Q ss_pred cCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---------CCeEEEEEEEchH--HHHHHHhcCCCCEEEE
Q 028557 83 KELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDEL--AHVASQHVEKGQQIYI 151 (207)
Q Consensus 83 ~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~---------~t~wi~V~awgk~--Ae~~~~~LkKGd~V~V 151 (207)
|..+|+|+|+||| +||++|+++ |+++++|+||+++.+. +++||+|++||++ |+ +.++|+||++|+|
T Consensus 143 M~~lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~V 219 (257)
T 4dni_A 143 MKSVNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCV 219 (257)
T ss_dssp TSCEEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEE
T ss_pred ccccCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEE
Confidence 4469999999999 999999999 9999999999998541 6899999999999 99 7889999999999
Q ss_pred EEEeeeeeeEcCCCcEEEEEEE-EEE----EEEEee
Q 028557 152 SGRLVSDVVESGDGQQQTYYKV-VVQ----QLNFVE 182 (207)
Q Consensus 152 eGrL~~~~~~dkdG~~~~~~eI-va~----~I~~L~ 182 (207)
+|+|+++.|+|++|++++.+++ .|+ ++.+|+
T Consensus 220 eGrL~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~ 255 (257)
T 4dni_A 220 NGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIH 255 (257)
T ss_dssp EEEEEEEEEECSSSSCEEEEEEEEECTTTCEEEECC
T ss_pred EEEEEeeeEEcCCCCEEEEEEEEEEECCCCEEEEec
Confidence 9999999999999999888774 455 677765
No 25
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.89 E-value=4e-23 Score=159.64 Aligned_cols=95 Identities=20% Similarity=0.147 Sum_probs=83.9
Q ss_pred ccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC------CCe-EEEEEEEchHHHHHHHhcCCCCEEEEEEEeeee
Q 028557 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT------QTS-WINLTFWDELAHVASQHVEKGQQIYISGRLVSD 158 (207)
Q Consensus 86 mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~------~t~-wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~ 158 (207)
||+|+|+|+|++||++|++++|.++++|+||+++... +.+ ||+|++||++||.+ ++|+||+.|.|+|+|+++
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~tr 79 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPA 79 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEES
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEEC
Confidence 7999999999999999999999999999999986432 334 49999999999998 999999999999999998
Q ss_pred eeEcCCCcEEEEEEEEEEEEEEeeCCCCC
Q 028557 159 VVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (207)
Q Consensus 159 ~~~dkdG~~~~~~eIva~~I~~L~~k~~~ 187 (207)
. ++| +.++|.|++|++|+.+.-+
T Consensus 80 s---~~G---~kl~l~a~~Ie~l~~~~~~ 102 (115)
T 3fhw_A 80 R---KDS---VKVKLHLQQARRIAGSMGR 102 (115)
T ss_dssp S---TTC---SSEEEEEEEEEECCCSCCC
T ss_pred C---CCC---CEEEEEEEEEEEcCCCCCC
Confidence 4 788 4689999999999765433
No 26
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.89 E-value=3.3e-23 Score=157.20 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=79.4
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC------CCCeE-EEEEEEchHHHHHHHhcCCCCEEEEEEEeee
Q 028557 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------TQTSW-INLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (207)
Q Consensus 85 ~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~------~~t~w-i~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~ 157 (207)
|+|+|+|+|+|++||++|++++|.++++|+||+++.+ .+++| |+|++||++|+ +.+ |+||++|+|+|+|++
T Consensus 6 m~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~ 83 (103)
T 3k8a_A 6 FTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQ 83 (103)
T ss_dssp CCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEE
T ss_pred cccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEE
Confidence 4499999999999999999999999999999998753 13555 99999999999 655 999999999999999
Q ss_pred eeeEcCCCcEEEEEEEEEEEEEEee
Q 028557 158 DVVESGDGQQQTYYKVVVQQLNFVE 182 (207)
Q Consensus 158 ~~~~dkdG~~~~~~eIva~~I~~L~ 182 (207)
+.| +|. .+.+.+++|++++
T Consensus 84 rs~---~~~---~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 84 KSR---RSL---MPMLRIQNIKEYK 102 (103)
T ss_dssp SSS---SCC---CEEEEEEEEEECC
T ss_pred Ccc---CCc---cEEEEEEEEEEcC
Confidence 999 333 7789999999984
No 27
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.82 E-value=1.1e-20 Score=142.80 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=67.3
Q ss_pred ccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC------CCCeE-EEEEEEchHHHHHHHhcCCCCEEEEEEEeeee
Q 028557 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------TQTSW-INLTFWDELAHVASQHVEKGQQIYISGRLVSD 158 (207)
Q Consensus 86 mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~------~~t~w-i~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~ 158 (207)
||+|+|+|+|++||++|++++|.++++|+||+++.+ .+++| |+|++||++||.+.+ +.||+.|.|+|+|+++
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~tr 80 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARK 80 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEEC
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeC
Confidence 899999999999999999999999999999998753 24566 999999999999986 7899999999999999
Q ss_pred eeEcC
Q 028557 159 VVESG 163 (207)
Q Consensus 159 ~~~dk 163 (207)
.|.++
T Consensus 81 s~~s~ 85 (101)
T 3en2_A 81 HRSSK 85 (101)
T ss_dssp C----
T ss_pred cCCCC
Confidence 99754
No 28
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.81 E-value=4.7e-19 Score=141.84 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=82.9
Q ss_pred cccCcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-----CCCeEEEEEEEc-hHHHHHHHhcCCCCEEEEE
Q 028557 79 IPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-----TQTSWINLTFWD-ELAHVASQHVEKGQQIYIS 152 (207)
Q Consensus 79 v~~~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~-----~~t~wi~V~awg-k~Ae~~~~~LkKGd~V~Ve 152 (207)
+--.-..+|+|+|+|||. ||+.+.+. +..++.|+||+++.+ .+++||+|.+|| ++|+.+.++|+||++|+|+
T Consensus 37 ~~~h~r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVe 114 (148)
T 3stb_C 37 VAAHWRCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVT 114 (148)
T ss_dssp -CCCCSCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEE
T ss_pred hhhhheecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEE
Confidence 333446899999999996 89999984 779999999999864 368999999996 8999999999999999999
Q ss_pred EEeeeeeeEcCCCcEEEEEEEE
Q 028557 153 GRLVSDVVESGDGQQQTYYKVV 174 (207)
Q Consensus 153 GrL~~~~~~dkdG~~~~~~eIv 174 (207)
|||+++.|+|++|+++|.+-++
T Consensus 115 GRLrmn~~~d~~gkk~Y~~p~i 136 (148)
T 3stb_C 115 GRLRMVPQYDGSMRKYYHYPVI 136 (148)
T ss_dssp EEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEcceeECCCCCEEeeccEE
Confidence 9999999999999999887655
No 29
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.78 E-value=4.7e-19 Score=153.56 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=84.7
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-----CCCeEEEEEEEc-hHHHHHHHhcCCCCEEEEEEEeee
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-----TQTSWINLTFWD-ELAHVASQHVEKGQQIYISGRLVS 157 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~-----~~t~wi~V~awg-k~Ae~~~~~LkKGd~V~VeGrL~~ 157 (207)
.+||+|+|+|||++| |+|++++|. ++.|++++++.+ ..++|+.|++|| ++||.+.++|+||++|+|+|+|++
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE
Confidence 489999999999999 999999884 677777777653 247788888999 999999999999999999999999
Q ss_pred eeeEcCCCcEEEEEEEEEEEEEEee
Q 028557 158 DVVESGDGQQQTYYKVVVQQLNFVE 182 (207)
Q Consensus 158 ~~~~dkdG~~~~~~eIva~~I~~L~ 182 (207)
|+++||++++.++|++.++.-++
T Consensus 106 --~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 106 --VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp --EEEECSSSSSEEEEEEEEECTTT
T ss_pred --eECCCCCcEEEEEEEEEEEEecC
Confidence 88899999999999999998764
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.64 E-value=0.00037 Score=52.28 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=52.3
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-CCCeEEEEEEEchHH--HHHHHhcCCCCEEEEEEEeeeeeeEcC
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-TQTSWINLTFWDELA--HVASQHVEKGQQIYISGRLVSDVVESG 163 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~-~~t~wi~V~awgk~A--e~~~~~LkKGd~V~VeGrL~~~~~~dk 163 (207)
.+++|+|+|. |.+--.. ....+.-|+|.++-.. .+.++|.|-+||+.+ +.+.+.|+.|+.|+|.|+|+...--|.
T Consensus 4 sn~vlvG~V~-DVQ~Gfl-~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~ 81 (105)
T 4dka_C 4 SNALMIGRIA-DVQHGFL-GAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD 81 (105)
T ss_dssp CEEEEEEEEE-EEEEEEE-TTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT
T ss_pred cceEEEEEEE-Eeeeccc-ccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc
Confidence 3578999997 3443333 3457999999996433 478999999999966 788899999999999999999865543
No 31
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.87 E-value=0.0087 Score=43.70 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=57.6
Q ss_pred cEEEEEEEECCCceEEEc--CCCc--EEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeeeEc
Q 028557 87 NTVHLIGVVGTPIETKHL--PSGK--VLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVES 162 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t--~nG~--~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~~d 162 (207)
..++++|+|..-.++++. ++|. .+..+.|+ ++|--+++++|++.|+. .++.||.|.|.|+.+.. .
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~-----DeTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~--~- 80 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK-----DDTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQG--Y- 80 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE-----ETTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC----
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE-----CCCCcEEEEEECCcccc---ccCCCCEEEEEEEEEEc--C-
Confidence 689999999976656653 3663 57777776 46779999999998876 69999999999976333 2
Q ss_pred CCCcEEEEEEEEEEEEEEee
Q 028557 163 GDGQQQTYYKVVVQQLNFVE 182 (207)
Q Consensus 163 kdG~~~~~~eIva~~I~~L~ 182 (207)
| .+++.+.+...++
T Consensus 81 --~----~~el~~g~~~~i~ 94 (97)
T 3e0e_A 81 --S----GLEISVDNIGIIE 94 (97)
T ss_dssp -------CEEEEEEEEEEEE
T ss_pred --C----eEEEEECCCcEEE
Confidence 1 5588887777665
No 32
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.66 E-value=0.0046 Score=45.98 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=52.6
Q ss_pred cEEEEEEEECCCceEE--EcCCC--cEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeee
Q 028557 87 NTVHLIGVVGTPIETK--HLPSG--KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVV 160 (207)
Q Consensus 87 N~V~LiGrL~~dPeir--~t~nG--~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~ 160 (207)
..+.++|.|..--+++ .+++| ..+..+.|+ +++.-+++++|++.++.. +.++.|+.|.|.|..-...|
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~-----D~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIA-----DDTGELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE-----ETTEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEE-----eCCCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEcccc
Confidence 3579999998764666 45677 688888887 445689999999987754 67999999999998744445
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.01 Score=44.16 Aligned_cols=82 Identities=20% Similarity=0.366 Sum_probs=59.9
Q ss_pred cEEEEEEEECCCceEEEc--CCCcE--EEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeeeEc
Q 028557 87 NTVHLIGVVGTPIETKHL--PSGKV--LAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVES 162 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t--~nG~~--va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~~d 162 (207)
+.|+++|+|..--++++. .+|.. +..+.|+ +++--+++++|++.|+. .+++||.|.|.|+.+...
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~-----D~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~--- 83 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVR-----DETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREGY--- 83 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE-----ETTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEECT---
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE-----CCCCcEEEEEECccccc---ccCCCCEEEEEEEEEEcc---
Confidence 689999999986666654 46754 5555554 33556999999998887 799999999988776652
Q ss_pred CCCcEEEEEEEEEEEEEEeeCC
Q 028557 163 GDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 163 kdG~~~~~~eIva~~I~~L~~k 184 (207)
.| .++|.+.+...++..
T Consensus 84 -~g----~~eL~~g~~~~i~~~ 100 (105)
T 3dm3_A 84 -YG----GLECTANYVEILKKG 100 (105)
T ss_dssp -TS----SEEEEEEEEEEEECC
T ss_pred -CC----CEEEEeCCceEEEec
Confidence 22 347777777777643
No 34
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=95.90 E-value=0.039 Score=41.43 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=48.7
Q ss_pred CccEEEEEEEECCCceEE--EcCCCc-EEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEE-EEeee
Q 028557 85 LTNTVHLIGVVGTPIETK--HLPSGK-VLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYIS-GRLVS 157 (207)
Q Consensus 85 ~mN~V~LiGrL~~dPeir--~t~nG~-~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~Ve-GrL~~ 157 (207)
..+.|.++|.|..--+++ .+.+|+ .+..+.|+ +++--+++++|+..|+ .++.|+.|.|. |++..
T Consensus 11 ~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~-----D~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~~ 78 (119)
T 1o7i_A 11 NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVG-----DETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTA 78 (119)
T ss_dssp TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE-----ETTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE-----eCCCEEEEEEECChhh----cCCCCCEEEEEeEEEEE
Confidence 455788999987654334 566886 78888887 4555699999999873 58999999999 77754
No 35
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=95.56 E-value=0.083 Score=39.07 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=49.4
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcE--EEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEE-EEeee
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKV--LAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYIS-GRLVS 157 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~--va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~Ve-GrL~~ 157 (207)
..++.|.++|.|-.--+.+.+.+|.+ +..+.|+ ++|--+++++|++. +++||.|.|. |..+.
T Consensus 11 pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~-----DeTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 11 LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE-----DDTARIRISSFGKQ-------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE-----CSSCEEEEEEESSC-------CCTTEEEEEEEEEEEE
T ss_pred CCCceEEEEEEEEEccccccccCCCeeEEEEEEEE-----cCCCeEEEEEEcCc-------cCCCCEEEEEeeEEeE
Confidence 35677999999987666655668874 8888887 56778999999996 9999999999 76654
No 36
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.026 Score=42.22 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=51.6
Q ss_pred CCccEEEEEEEECCCceEEEcCC--C-cEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEE
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPS--G-KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~n--G-~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeG 153 (207)
..++..+|.|+|..--++|+..+ | ..+..+.|+ +++.-+++++|++.|+.+.+.|+.|+.++|++
T Consensus 12 p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~-----De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 79 (114)
T 1ynx_A 12 PYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL-----DTSGEIRATAFNDFATKFNEILQEGKVYYVSK 79 (114)
T ss_dssp TTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE-----ETTEEEEEEECHHHHHHHHHHSCSSSEEEEES
T ss_pred CCCCceEEEEEEEEeccceEEecCCCCceEEEEEEE-----CCCCeEEEEECHHHHHHHHhhcccCcEEEECC
Confidence 35677899999998777776653 2 256666665 23338999999999999999999999999998
No 37
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=94.98 E-value=0.32 Score=49.22 Aligned_cols=87 Identities=21% Similarity=0.247 Sum_probs=67.1
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHH--HHHHHhcCCCCEEEEEEEeeeeeeEc
Q 028557 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELA--HVASQHVEKGQQIYISGRLVSDVVES 162 (207)
Q Consensus 85 ~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~A--e~~~~~LkKGd~V~VeGrL~~~~~~d 162 (207)
-+..|++.|.|-. .+.|++.+|+.+..|.|. +.++-+.|..|-+.. ..+.+.+++|+.|.|.|.++.+.|.
T Consensus 16 ~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~t-----d~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~- 88 (1041)
T 3f2b_A 16 EERRVVVQGYVFD-AEVSELKSGRTLLTMKIT-----DYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFV- 88 (1041)
T ss_dssp CEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE-----CSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTT-
T ss_pred ccceEEEEEEEEE-EEEEEccCCCEEEEEEEE-----eCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCC-
Confidence 4678999999985 889999999988888875 346778999886533 3456789999999999999988874
Q ss_pred CCCcEEEEEEEEEEEEEEeeCC
Q 028557 163 GDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 163 kdG~~~~~~eIva~~I~~L~~k 184 (207)
++ +.+.+.+|..++..
T Consensus 89 ~~------~~~~~~~~~~~~~~ 104 (1041)
T 3f2b_A 89 RD------LVIIANDLNEIAAN 104 (1041)
T ss_dssp TE------EEEEEEEEEEECCC
T ss_pred cc------eEEEeeeeEEeccc
Confidence 21 34667777777643
No 38
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=93.59 E-value=1.5 Score=32.02 Aligned_cols=89 Identities=15% Similarity=0.071 Sum_probs=58.5
Q ss_pred cCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---CCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeee
Q 028557 83 KELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---QTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDV 159 (207)
Q Consensus 83 ~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~---~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~ 159 (207)
..|+|.|.|.|-|.+ .+-..+-. -...+|.-.|.+. -+||+-+-+-|++|-.+.+|.+|=.-|.|+|.|++..
T Consensus 5 ggMLN~V~LEG~IeS---~kWS~kKT-GF~VTIkQkR~FGer~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY~ 80 (110)
T 2hql_A 5 GGMLNRVFLEGEIES---SCWSVKKT-GFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRTYL 80 (110)
T ss_dssp --CCEEEEEEEEEEE---EEECTTCS-EEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEEEE
T ss_pred cceEEEEEEeeeeeh---hcccccCc-eEEEEEeehhhhccccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhHH
Confidence 358999999999875 33332221 1223344444443 3788888888999999999999999999999998764
Q ss_pred eEcCCCcEEEEEEEEEEEE
Q 028557 160 VESGDGQQQTYYKVVVQQL 178 (207)
Q Consensus 160 ~~dkdG~~~~~~eIva~~I 178 (207)
= .+.+... +.|.+..|
T Consensus 81 e-kkS~iWK--TtI~~~KI 96 (110)
T 2hql_A 81 E-RKSEIWK--TTIEIVKI 96 (110)
T ss_dssp E-TTTTEEE--EEEEEEEE
T ss_pred H-Hhcccce--eEEEEEEE
Confidence 2 2455433 34444443
No 39
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=91.64 E-value=1.5 Score=39.86 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEc--hHHHHHHHhcCCCCEEEEEEEeeeeeeE
Q 028557 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD--ELAHVASQHVEKGQQIYISGRLVSDVVE 161 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awg--k~Ae~~~~~LkKGd~V~VeGrL~~~~~~ 161 (207)
...-.+.+.|.|...|... ++|. +.|+|.. +..-++|++|. +....+...|..||.|.|-|.+..
T Consensus 282 ~~~~~~~v~G~V~~~P~~~--~GGH--V~f~l~d-----~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~---- 348 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDI--EGGH--VFFEIDT-----KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK---- 348 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEE--TTTE--EEEEEEE-----TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET----
T ss_pred ccCceEEEEEEEecCcEec--cCce--EEEEEEc-----CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC----
Confidence 4577899999999987654 4564 5566664 26679999999 456666778999999999999544
Q ss_pred cCCCcEEEEEEEEEEEEEEeeCC
Q 028557 162 SGDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 162 dkdG~~~~~~eIva~~I~~L~~k 184 (207)
| .|.++++.+++-.
T Consensus 349 ---g------tLnvEk~~v~~l~ 362 (402)
T 3au7_A 349 ---D------TINLEKIQIVELA 362 (402)
T ss_dssp ---T------EEEEEEEEEEECC
T ss_pred ---C------EEEEEEEEEcccC
Confidence 4 7888888888653
No 40
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=91.32 E-value=1 Score=34.11 Aligned_cols=85 Identities=12% Similarity=0.182 Sum_probs=57.2
Q ss_pred cccCcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCe-EEEEEEEchHHHH--HHHhcCCCCEEEEEEEe
Q 028557 79 IPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-WINLTFWDELAHV--ASQHVEKGQQIYISGRL 155 (207)
Q Consensus 79 v~~~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~-wi~V~awgk~Ae~--~~~~LkKGd~V~VeGrL 155 (207)
......-++.|.|+|.|.. +. ....+..|.|. +.|- -+.|..|....+. -...++.|+.|.|.|++
T Consensus 24 f~i~g~~i~~V~iVG~V~~---~~---~~~~~~~~~ld-----D~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l 92 (132)
T 3kdf_D 24 FRIGNVEISQVTIVGIIRH---AE---KAPTNIVYKID-----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHL 92 (132)
T ss_dssp EEETTEECCEEEEEEEEEE---EE---ECSSEEEEEEE-----CSSSSCEEEEEEC---------CCCCTTCEEEEEEEE
T ss_pred EEECCEEEEEEEEEEEEEE---EE---EcCCeEEEEEE-----CCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEE
Confidence 3344556899999999985 22 23457788887 5566 7999999874322 24578999999999999
Q ss_pred eeeeeEcCCCcEEEEEEEEEEEEEEeeC
Q 028557 156 VSDVVESGDGQQQTYYKVVVQQLNFVER 183 (207)
Q Consensus 156 ~~~~~~dkdG~~~~~~eIva~~I~~L~~ 183 (207)
+.. +|+ ..|.+..|..++.
T Consensus 93 ~~f-----~g~----~qi~~~~ir~v~d 111 (132)
T 3kdf_D 93 RSF-----QNK----KSLVAFKIMPLED 111 (132)
T ss_dssp EEE-----TTE----EEEEEEEEEECSS
T ss_pred EeE-----CCE----EEEEEEEEEEcCC
Confidence 874 343 3477777777654
No 41
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=89.21 E-value=1.6 Score=33.15 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=58.9
Q ss_pred ccccCcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHHH---HHHhcCCCCEEEEEEE
Q 028557 78 EIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHV---ASQHVEKGQQIYISGR 154 (207)
Q Consensus 78 ~v~~~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~---~~~~LkKGd~V~VeGr 154 (207)
.......-++.|.|+|.|.. +. .+..+..|.|. +.|--+.|..|....+. -...++.|+.|.|.|+
T Consensus 28 ~f~i~g~~i~~V~iVG~V~~---~~---~~~~~~~~~ld-----D~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~ 96 (136)
T 4gop_B 28 EFILDGAELGQLTFVAVVRN---IS---RNATNVAYSVE-----DGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGT 96 (136)
T ss_dssp CCBSSSSBCCEEEEEEEEEE---EE---ECSSEEEEEEE-----CSSCEEEEEEECC--------CCSCCTTCEEEEEEE
T ss_pred cEEECCEEEEEEEEEEEEEE---EE---ecCCeEEEEEE-----CCCCCEEEEEecccCCcccccccccCCCCEEEEEEE
Confidence 34445567999999999985 22 24567888886 55667999999864432 2456899999999999
Q ss_pred eeeeeeEcCCCcEEEEEEEEEEEEEEeeC
Q 028557 155 LVSDVVESGDGQQQTYYKVVVQQLNFVER 183 (207)
Q Consensus 155 L~~~~~~dkdG~~~~~~eIva~~I~~L~~ 183 (207)
++.. +|+ ..|.+..|..++.
T Consensus 97 v~~f-----~g~----~qi~~~~ir~v~d 116 (136)
T 4gop_B 97 LKSF-----QNR----RSISSGHMRPVID 116 (136)
T ss_dssp EEEE-----TTE----EEEEESEEEECSS
T ss_pred EEEe-----CCE----EEEEEEEEEECCC
Confidence 9774 343 3566666666643
No 42
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=89.17 E-value=0.97 Score=37.20 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=49.1
Q ss_pred CCccEEEEEEEECCCceEEEcC--CC-cEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEE
Q 028557 84 ELTNTVHLIGVVGTPIETKHLP--SG-KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (207)
Q Consensus 84 ~~mN~V~LiGrL~~dPeir~t~--nG-~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeG 153 (207)
..++...|.|+|..--++|+.. +| ..+..+.|+ +++--+++++|++.++.+.+.|+.|+.+.|++
T Consensus 16 p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~-----De~G~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 16 PYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV-----DESGEIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp TTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE-----CSSCEEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCCCceEEEEEEEEecccceeeCCCCCceEEEEEEE-----CCCCeEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 3566788999999876666543 22 245555555 22237999999999999999999999999999
No 43
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=88.64 E-value=4.9 Score=37.03 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=56.9
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEch-------HHHHHHHhcCCCCEEEEEEEeeeee
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE-------LAHVASQHVEKGQQIYISGRLVSDV 159 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk-------~Ae~~~~~LkKGd~V~VeGrL~~~~ 159 (207)
..|+|.|+|.. +|.. |+.++-+.|. + .+..++|++-.+ ......+.|..||.|.|+|.+..+.
T Consensus 37 ~~V~v~GwV~~---~R~~--g~~l~Fi~Lr-D----~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~ 106 (487)
T 1eov_A 37 KEVLFRARVHN---TRQQ--GATLAFLTLR-Q----QASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVD 106 (487)
T ss_dssp CEEEEEEEEEE---EEEC--SSSEEEEEEE-E----TTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECS
T ss_pred CEEEEEEEEEE---eecc--CCccEEEEEE-E----CCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 36999999985 4543 4433333333 2 234688877432 1223346799999999999998764
Q ss_pred eEcCCCcEEEEEEEEEEEEEEeeCCC
Q 028557 160 VESGDGQQQTYYKVVVQQLNFVERSS 185 (207)
Q Consensus 160 ~~dkdG~~~~~~eIva~~I~~L~~k~ 185 (207)
-.++++ +.-.++|.|+++.+|....
T Consensus 107 ~~~~~~-~~g~~El~~~~i~vl~~a~ 131 (487)
T 1eov_A 107 EPIKSA-TVQNLEIHITKIYTISETP 131 (487)
T ss_dssp SCCTTS-SEEEEEEEEEEEEEEECCC
T ss_pred CCCcCC-CCCcEEEEEEEEEEeeccc
Confidence 222222 3347899999999998654
No 44
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=88.59 E-value=0.75 Score=47.27 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=41.2
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeeeEcCCCc
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQ 166 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~~dkdG~ 166 (207)
..|.+.|-|.. .+.+.|++|+.++.++|. +.+.-++|++|.+.-+.....|..|..|.|.|+++.+ +
T Consensus 1043 ~~v~v~G~v~~-~~~~~Tk~G~~maf~tle-----D~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~-----~-- 1109 (1220)
T 2hpi_A 1043 PKVLLSGMVEE-VVRKPTRSGGMMARFTLS-----DETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG-----E-- 1109 (1220)
T ss_dssp CEEEEEEEECC-C------------CEEEE-----ETTEEEEEC-------------CTTCEEEEEEEEC----------
T ss_pred CeEEEEEEEEE-EEEeecCCCCeEEEEEEE-----ECCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEEC-----C--
Confidence 34788888875 666778899999988887 4566799999999888888899999999999999843 1
Q ss_pred EEEEEEEEEEEEEEeeC
Q 028557 167 QQTYYKVVVQQLNFVER 183 (207)
Q Consensus 167 ~~~~~eIva~~I~~L~~ 183 (207)
...|+|+++.-++.
T Consensus 1110 ---~~~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1110 ---ELRVLAQAVWTLEE 1123 (1220)
T ss_dssp -----CEEEEEEEEHHH
T ss_pred ---CcEEEEeeeecHHH
Confidence 25788888876653
No 45
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=88.55 E-value=4.6 Score=29.53 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=44.8
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEE-EEeee
Q 028557 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYIS-GRLVS 157 (207)
Q Consensus 85 ~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~Ve-GrL~~ 157 (207)
....|.++|+|-.- ....+|..+....|+ ++|--+++++|++. ....++.|+.|.|. |..+.
T Consensus 14 ~~~~v~v~~~V~~~---~~~~~~~~~~~~~l~-----DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~ 76 (109)
T 2kbn_A 14 NGQWANLKAKVIQL---WENTHESISQVGLLG-----DETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGE 76 (109)
T ss_dssp TTCEEEEEEEEEEE---EECCCSSEEEEEEEE-----CTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEe---EcCCCCeEEEEEEEE-----CCCCeEEEEEECcc---cccccCCCCEEEEEEEEEEE
Confidence 46789999999852 233456666666665 56667999999953 23578999999999 66665
No 46
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=87.70 E-value=0.95 Score=40.90 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=49.7
Q ss_pred CccEEEEEEEECCCceEEEcC--CCc-EEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEE
Q 028557 85 LTNTVHLIGVVGTPIETKHLP--SGK-VLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (207)
Q Consensus 85 ~mN~V~LiGrL~~dPeir~t~--nG~-~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGr 154 (207)
.++..+|.|||..--++|+.. +|. .+..+.|+- ++.-|++++|+++++.+.+.|+.|+.+.|++-
T Consensus 12 ~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~D-----e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 12 YQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLD-----DSGEIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp TCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEEC-----SSCEEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred CCcceEEEEEEEEccCcceecCCCCCceEEEEEEEc-----CCCEEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 456789999999766666543 232 566666652 23379999999999999999999999999983
No 47
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=87.21 E-value=2.7 Score=35.20 Aligned_cols=106 Identities=10% Similarity=0.085 Sum_probs=62.6
Q ss_pred ccccCcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHH---hcCCCCEEEEEEE
Q 028557 78 EIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQ---HVEKGQQIYISGR 154 (207)
Q Consensus 78 ~v~~~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~---~LkKGd~V~VeGr 154 (207)
.+-|.-..+++|.|+|.|...-+.-...+|...-...+.+++.-.....+.|.+--.......- ..--|..|.|.|.
T Consensus 77 i~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~ 156 (220)
T 3kf8_A 77 VVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGE 156 (220)
T ss_dssp CEEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEE
T ss_pred EEEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEE
Confidence 3556666799999999999743322111232233344444555444567777665443221111 1336999999999
Q ss_pred eeeeeeEcCCCcEEEEEEEEEEEEEEeeCC
Q 028557 155 LVSDVVESGDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 155 L~~~~~~dkdG~~~~~~eIva~~I~~L~~k 184 (207)
+.... .+-+.......+|.|++|.+++..
T Consensus 157 i~~~r-~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 157 IYNWY-DSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp EEECC-CSTTTTSCCCEEEEEEEEEEEESS
T ss_pred EEeec-cccccccccceEEEEEEEEEeccC
Confidence 98642 111222223449999999999765
No 48
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=83.79 E-value=3.3 Score=32.33 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=47.4
Q ss_pred CcCCccEEEEEEEECCCceEE---EcC--CC--------cEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCE
Q 028557 82 DKELTNTVHLIGVVGTPIETK---HLP--SG--------KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQ 148 (207)
Q Consensus 82 ~~~~mN~V~LiGrL~~dPeir---~t~--nG--------~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~ 148 (207)
-...++.++|+|+|...-+++ +.. +| ..++...|+ ++|--+.+++|++.++ .++.||.
T Consensus 22 L~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVg-----DeTG~I~ftlW~e~~~----~l~~Gd~ 92 (145)
T 1wjj_A 22 LKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG-----DETGCILFTARNDQVD----LMKPGAT 92 (145)
T ss_dssp CCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE-----CSSCEEEEEECTTHHH----HTCTTCE
T ss_pred cCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEE-----cCCcEEEEEEecCCcC----cCCCCCE
Confidence 344677899999997644443 221 33 257777777 6788899999998664 3789999
Q ss_pred EEEEEEee
Q 028557 149 IYISGRLV 156 (207)
Q Consensus 149 V~VeGrL~ 156 (207)
|.+.+-.-
T Consensus 93 v~i~na~v 100 (145)
T 1wjj_A 93 VILRNSRI 100 (145)
T ss_dssp EEEEEEEE
T ss_pred EEEeccEE
Confidence 99987543
No 49
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=83.27 E-value=11 Score=35.13 Aligned_cols=80 Identities=11% Similarity=0.169 Sum_probs=54.5
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHH---H---HHHHhcCCCCEEEEEEEeeeeee
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELA---H---VASQHVEKGQQIYISGRLVSDVV 160 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~A---e---~~~~~LkKGd~V~VeGrL~~~~~ 160 (207)
..|.|.|+|.. +|.. |+.++-+.|. +. +.-++|++-.+.. + .+.+.|..||.|.|+|.+...
T Consensus 56 ~~V~v~Grv~~---~R~~--gkk~~F~~Lr-D~----sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t-- 123 (521)
T 3bju_A 56 ITLKVAGRIHA---KRAS--GGKLIFYDLR-GE----GVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKT-- 123 (521)
T ss_dssp CCEEEEEEEEE---EEES--SSSEEEEEEE-ET----TEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEEC--
T ss_pred cEEEEEEEEEE---EecC--CCCcEEEEEE-EC----CEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEec--
Confidence 36999999985 5543 5334444444 22 3568888764321 1 123569999999999999765
Q ss_pred EcCCCcEEEEEEEEEEEEEEeeCC
Q 028557 161 ESGDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 161 ~dkdG~~~~~~eIva~~I~~L~~k 184 (207)
+.| .++|.|+++.+|...
T Consensus 124 --~~g----e~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 124 --KKG----ELSIIPYEITLLSPC 141 (521)
T ss_dssp --TTC----CEEEEEEEEEEEECC
T ss_pred --CCC----CEEEEEeEEEEeecC
Confidence 345 479999999999864
No 50
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=82.28 E-value=3.3 Score=34.76 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=43.2
Q ss_pred CCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeeeE--cCCCcEEEEEEEEEEEEEEeeC
Q 028557 123 QTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVE--SGDGQQQTYYKVVVQQLNFVER 183 (207)
Q Consensus 123 ~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~~--dkdG~~~~~~eIva~~I~~L~~ 183 (207)
-+.-+.|.+.+++. +.++.||+|.|.|-++..... .+.+...+.+.|.|.+|..++.
T Consensus 209 ~Prsi~v~l~~dLv----d~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 209 LPRQLEIILEDDLV----DSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp CCCEEEEEEEGGGT----TSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred CCcEEEEEEccCcc----CcccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 35688899988864 567999999999999887543 2345567788999999988753
No 51
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=82.11 E-value=6 Score=33.41 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=54.4
Q ss_pred CcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCe-EEEEEEEchHHH--HHHHhcCCCCEEEEEEEeeee
Q 028557 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-WINLTFWDELAH--VASQHVEKGQQIYISGRLVSD 158 (207)
Q Consensus 82 ~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~-wi~V~awgk~Ae--~~~~~LkKGd~V~VeGrL~~~ 158 (207)
...-++.|.|+|.|.. +. .+..++.|+|. +.|- -+.|..|....+ .-...++.|+.|.|.|+++..
T Consensus 67 ~g~~i~~V~ivG~V~~---i~---~~~~~~~~~L~-----D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f 135 (270)
T 2pi2_A 67 GNVEISQVTIVGIIRH---AE---KAPTNIVYKID-----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF 135 (270)
T ss_dssp TTEEESEEEEEEEEEE---EE---ECSSEEEEEEE-----CSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEEEE---EE---eccceEEEEEE-----CCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEec
Confidence 3445788999999875 21 23568888887 4455 789999976433 123568999999999999864
Q ss_pred eeEcCCCcEEEEEEEEEEEEEEee
Q 028557 159 VVESGDGQQQTYYKVVVQQLNFVE 182 (207)
Q Consensus 159 ~~~dkdG~~~~~~eIva~~I~~L~ 182 (207)
+|+ ..|.+..|..++
T Consensus 136 -----~g~----~qi~i~~ir~v~ 150 (270)
T 2pi2_A 136 -----QNK----KSLVAFKIMPLE 150 (270)
T ss_dssp -----TTE----EEEEEEEEEECS
T ss_pred -----CCe----eEEEEEEEEecC
Confidence 233 356666666655
No 52
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=80.98 E-value=14 Score=33.50 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=52.6
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHH-HHHHhcCCCCEEEEEEEeeeeeeEcCCC
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAH-VASQHVEKGQQIYISGRLVSDVVESGDG 165 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae-~~~~~LkKGd~V~VeGrL~~~~~~dkdG 165 (207)
..|+|.|+|.. +|.. |+.++-+.|. +.+..++|++-.+..+ .....|..||.|.|+|.+..+. .|
T Consensus 12 ~~V~v~Gwv~~---~R~~--Gk~~~Fi~Lr-----D~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~----~~ 77 (435)
T 2xgt_A 12 ERVCIKGWIHR---MRRQ--GKSLMFFILR-----DGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVP----EG 77 (435)
T ss_dssp SEEEEEEEEEE---EEEC--TTSEEEEEEE-----CSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC------
T ss_pred CEEEEEEEEEE---eccc--CCCcEEEEEE-----ECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecC----CC
Confidence 36999999985 5543 4334444444 2234588887644322 1112699999999999998752 22
Q ss_pred c-EEEEEEEEEEEEEEeeC
Q 028557 166 Q-QQTYYKVVVQQLNFVER 183 (207)
Q Consensus 166 ~-~~~~~eIva~~I~~L~~ 183 (207)
. +.-.++|.|+++.+|..
T Consensus 78 ~~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 78 KEAPNGHELIADFWKIIGN 96 (435)
T ss_dssp ----TTEEEEEEEEEEEEC
T ss_pred cCCCCcEEEEEEEEEEeec
Confidence 1 12248999999999985
No 53
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=78.84 E-value=20 Score=32.97 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=53.2
Q ss_pred EEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchH-HH---HHHHhcCCCCEEEEEEEeeeeeeEcC
Q 028557 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL-AH---VASQHVEKGQQIYISGRLVSDVVESG 163 (207)
Q Consensus 88 ~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~-Ae---~~~~~LkKGd~V~VeGrL~~~~~~dk 163 (207)
.|+|.|+|.. +|.. |+ ++-+.|. +. +..++|++-.+. .+ ...+.|..||.|.|+|.+... +
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~~F~~Lr-D~----sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~----~ 122 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-AGFAHIQ-DV----TGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKT----K 122 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEE-ET----TEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEEC----T
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-EC----CEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeC----C
Confidence 6999999985 4543 44 3333333 22 346888875432 11 123679999999999999765 3
Q ss_pred CCcEEEEEEEEEEEEEEeeCC
Q 028557 164 DGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 164 dG~~~~~~eIva~~I~~L~~k 184 (207)
.| .++|.|+++.+|...
T Consensus 123 ~g----e~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 123 VG----ELSIKVSSYEFLTKA 139 (493)
T ss_dssp TC----CEEEEEEEEEEEECC
T ss_pred CC----cEEEEEEEEEEcccc
Confidence 45 479999999999865
No 54
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=77.62 E-value=20 Score=28.20 Aligned_cols=85 Identities=8% Similarity=0.116 Sum_probs=56.0
Q ss_pred cCcCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchH---HHHHHHhcCCCCEEEEEEEeee
Q 028557 81 WDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL---AHVASQHVEKGQQIYISGRLVS 157 (207)
Q Consensus 81 ~~~~~mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~---Ae~~~~~LkKGd~V~VeGrL~~ 157 (207)
|....++.|.|.|.|..- ... . + ...|+|- +. ...-++|++|-+. +......+..|+.|-|.|.+++
T Consensus 42 ~~n~PI~~V~IvGiVv~~---~~~-~-~-~~~ytID--D~--TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~ 111 (159)
T 3kf6_A 42 WMGFPIRWIQIVGYIAAI---DIY-E-G-KHVLTVD--DC--SGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINS 111 (159)
T ss_dssp ETTEEECEEEEEEEEEEE---EEE-T-T-EEEEEEE--CS--SSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEEC
T ss_pred ECCeEEEEEEEEEEEEEE---EEe-C-C-EEEEEEe--cC--CCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEe
Confidence 555578999999999872 221 1 1 2334332 22 1237999999775 2233445889999999999976
Q ss_pred eeeEcCCCcEEEEEEEEEEEEEEeeCC
Q 028557 158 DVVESGDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 158 ~~~~dkdG~~~~~~eIva~~I~~L~~k 184 (207)
. .| ..+|.++.|..++..
T Consensus 112 f-----r~----~rqI~~~~i~~v~d~ 129 (159)
T 3kf6_A 112 F-----RS----EVELIAQSFEELRDP 129 (159)
T ss_dssp S-----SS----SCEEEEEEEEEECST
T ss_pred e-----CC----EEEEEEEEEEECCCc
Confidence 4 22 237888888888754
No 55
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=76.40 E-value=33 Score=31.04 Aligned_cols=82 Identities=11% Similarity=0.175 Sum_probs=54.5
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchH----HHHHHHhcCCCCEEEEEEEeeeeeeEc
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL----AHVASQHVEKGQQIYISGRLVSDVVES 162 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~----Ae~~~~~LkKGd~V~VeGrL~~~~~~d 162 (207)
..|+|.|+|.. +|.. |+ ++-+.|. + .+..++|++-.+. .-...+.|..||.|.|+|.+.... .
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~Fi~Lr-D----~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~--~ 83 (438)
T 3nem_A 17 QKVKVAGWVWE---VKDL--GG-IKFLWIR-D----RDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP--K 83 (438)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E----TTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT--T
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E----CCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC--C
Confidence 46899999985 4443 44 4433443 2 2345888776542 112345799999999999997652 1
Q ss_pred CCCcEEEEEEEEEEEEEEeeCCC
Q 028557 163 GDGQQQTYYKVVVQQLNFVERSS 185 (207)
Q Consensus 163 kdG~~~~~~eIva~~I~~L~~k~ 185 (207)
..| .++|.|+++.+|....
T Consensus 84 ~~~----~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 84 AKL----GFEILPEKIVVLNRAE 102 (438)
T ss_dssp STT----SEEEEEEEEEEEECBC
T ss_pred CCC----cEEEEEEEEEEEecCC
Confidence 223 4899999999998654
No 56
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=75.45 E-value=24 Score=32.64 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=52.8
Q ss_pred EEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchH-H-H--H-HHHhcCCCCEEEEEEEeeeeeeEc
Q 028557 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL-A-H--V-ASQHVEKGQQIYISGRLVSDVVES 162 (207)
Q Consensus 88 ~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~-A-e--~-~~~~LkKGd~V~VeGrL~~~~~~d 162 (207)
.|+|.|+|.. +|.. |+ ++-+.|. +. +.-+.|++-.+. . + . ..+.|..||.|.|+|.+...
T Consensus 66 ~V~v~Gwv~~---~R~~--gk-~~F~~Lr-D~----sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~---- 130 (504)
T 1e1o_A 66 EVSVAGRMMT---RRIM--GK-ASFVTLQ-DV----GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKT---- 130 (504)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEE-ET----TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEEC----
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-EC----CeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEec----
Confidence 6999999985 4543 44 3333333 22 346888775431 1 1 1 33679999999999999765
Q ss_pred CCCcEEEEEEEEEEEEEEeeCC
Q 028557 163 GDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 163 kdG~~~~~~eIva~~I~~L~~k 184 (207)
+.| .++|.|+++.+|...
T Consensus 131 ~~g----e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 131 QTG----ELSIHCTELRLLTKA 148 (504)
T ss_dssp TTC----CEEEEEEEEEEEECC
T ss_pred CCc----eEEEEEEEEEEeccc
Confidence 345 479999999999864
No 57
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=74.92 E-value=33 Score=30.96 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=53.9
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchH----HHHHHHhcCCCCEEEEEEEeeeeeeEc
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL----AHVASQHVEKGQQIYISGRLVSDVVES 162 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~----Ae~~~~~LkKGd~V~VeGrL~~~~~~d 162 (207)
..|+|.|+|.. +|.. |+ ++-+.|. + .+..++|++-.+. .-...+.|..||.|.|+|.+..+.
T Consensus 17 ~~V~v~G~v~~---~R~~--g~-~~F~~lr-D----~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~--- 82 (434)
T 1x54_A 17 KKVRLAGWVYT---NMRV--GK-KIFLWIR-D----STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADE--- 82 (434)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E----TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT---
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E----CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecC---
Confidence 36999999985 4544 44 3433333 2 2445888875332 112236799999999999997763
Q ss_pred CCCcEEEEEEEEEEEEEEeeCC
Q 028557 163 GDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 163 kdG~~~~~~eIva~~I~~L~~k 184 (207)
.|. -.++|.|+++.+|...
T Consensus 83 -~~~--~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 83 -RAP--GGAEVHVEKLEVIQAV 101 (434)
T ss_dssp -TSG--GGEEEEEEEEEEEECC
T ss_pred -CCC--ccEEEEEeEEEEeecC
Confidence 221 1479999999999865
No 58
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=72.99 E-value=53 Score=30.62 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=52.4
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchH-H-H--HHHHhcCCCCEEEEEEEeeeeeeEc
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL-A-H--VASQHVEKGQQIYISGRLVSDVVES 162 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~-A-e--~~~~~LkKGd~V~VeGrL~~~~~~d 162 (207)
..|.|.|+|.. +|.. |+ ++-+.|. +. +.-+.|++=.+. . + ...+.|..||.|.|+|.+...
T Consensus 87 ~~V~v~GwV~~---~R~~--Gk-~~Fi~Lr-D~----sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t---- 151 (529)
T 4ex5_A 87 LEVAIAGRMML---KRVM--GK-ASFATVQ-DG----SGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRT---- 151 (529)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-CS----SCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEEC----
T ss_pred cEEEEEEEEEe---eecC--CC-eEEEEEE-eC----CeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEc----
Confidence 36999999985 4543 44 3333333 22 246777664432 1 1 234569999999999999753
Q ss_pred CCCcEEEEEEEEEEEEEEeeCC
Q 028557 163 GDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 163 kdG~~~~~~eIva~~I~~L~~k 184 (207)
+.| .++|.|++|.+|...
T Consensus 152 ~~g----elel~~~~i~vLs~a 169 (529)
T 4ex5_A 152 NKG----ELSVKCTQLRLLAKA 169 (529)
T ss_dssp TTS----CEEEEEEEEEEEECC
T ss_pred CCC----cEEEEEEEEEEEecC
Confidence 445 489999999999864
No 59
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=72.94 E-value=31 Score=31.13 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=53.4
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchH-HHHHHHhcCCCCEEEEEEEeeeeeeEcCCC
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL-AHVASQHVEKGQQIYISGRLVSDVVESGDG 165 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~-Ae~~~~~LkKGd~V~VeGrL~~~~~~dkdG 165 (207)
..|+|.|+|.. +|.. |+ ++-+.|. + .+..++|++-.+. .-...+.|..||.|.|+|.+..+. .|
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D----~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~----~~ 81 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-KKFIILR-D----KTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKADK----RA 81 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E----TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECS----SS
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E----CCeeEEEEEeCChHHHHHHHhCCCCCEEEEEEEEEecC----CC
Confidence 36999999985 4544 44 3433333 2 2345888775431 111236799999999999997763 22
Q ss_pred cEEEEEEEEEEEEEEeeCC
Q 028557 166 QQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 166 ~~~~~~eIva~~I~~L~~k 184 (207)
. -.++|.|+++.+|...
T Consensus 82 ~--~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 82 P--RGIELHAEEITLLSKA 98 (429)
T ss_dssp G--GGEEEEEEEEEEEECC
T ss_pred C--ccEEEEEeEEEEeccC
Confidence 1 1479999999999865
No 60
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=72.90 E-value=23 Score=32.29 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=54.3
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEc-hHHH-HHHHhcCCCCEEEEEEEeeeeeeEcCC
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD-ELAH-VASQHVEKGQQIYISGRLVSDVVESGD 164 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awg-k~Ae-~~~~~LkKGd~V~VeGrL~~~~~~dkd 164 (207)
..|+|.|+|.. +|. .|+.++-+.|. +.+..++|++-. ...+ .....|..||.|.|+|.+..+.-...+
T Consensus 31 ~~V~v~Gwv~~---~R~--~Gk~~~Fi~Lr-----D~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 100 (456)
T 3m4p_A 31 KLVTFKGWAYH---IRK--ARKTLIFVELR-----DGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHP 100 (456)
T ss_dssp SEEEEEEEEEE---EEC--CSSSEEEEEEE-----CSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCC
T ss_pred CEEEEEEEEEE---Eec--CCCceEEEEEE-----eCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccC
Confidence 46899999985 443 34444544443 223358888765 2221 123469999999999999765311011
Q ss_pred C--cEEEEEEEEEEEEEEeeCC
Q 028557 165 G--QQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 165 G--~~~~~~eIva~~I~~L~~k 184 (207)
- .+.-.++|.|+++.+|...
T Consensus 101 ~~~~t~g~~El~~~~i~vl~~a 122 (456)
T 3m4p_A 101 PEIADILNLEMQVTEWKVIGES 122 (456)
T ss_dssp CSCTTBCSSEEEEEEEEEEECC
T ss_pred cccCCCCcEEEEEeEEEEEecC
Confidence 0 0002479999999999864
No 61
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=72.66 E-value=18 Score=33.91 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=56.4
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEch-----HHHHHHHhcCCCCEEEEEEEeeeeeeE
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE-----LAHVASQHVEKGQQIYISGRLVSDVVE 161 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk-----~Ae~~~~~LkKGd~V~VeGrL~~~~~~ 161 (207)
..|.|.|+|.. +|.. |+ ++-+.|. +.+..+.|++-.+ ........|..|+.|.|+|.+....-.
T Consensus 63 ~~V~v~Gwv~~---~R~~--gk-l~Fi~Lr-----D~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 131 (548)
T 3i7f_A 63 KTVTIRARVQA---VRGK--GN-MVFLFLR-----KGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKP 131 (548)
T ss_dssp CEEEEEEEEEE---EEEC--SS-EEEEEEE-----ETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSC
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-----ECCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCcc
Confidence 46899999985 4543 43 4444443 2234788877641 222235679999999999999876321
Q ss_pred cCCCcEEEEEEEEEEEEEEeeCCC
Q 028557 162 SGDGQQQTYYKVVVQQLNFVERSS 185 (207)
Q Consensus 162 dkdG~~~~~~eIva~~I~~L~~k~ 185 (207)
. .+.+.-.++|.|++|.+|....
T Consensus 132 ~-~~~~~~~~El~~~~i~vls~a~ 154 (548)
T 3i7f_A 132 I-EKATQQDVEIHVTSIAVVSLAE 154 (548)
T ss_dssp C-TTSSSCSEEEEEEEEEEEECCC
T ss_pred c-ccCCCCcEEEEEeEEEEEecCC
Confidence 1 1112235899999999998653
No 62
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=72.18 E-value=37 Score=30.54 Aligned_cols=74 Identities=14% Similarity=0.290 Sum_probs=51.6
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcC-CCCEEEEEEEeeeeeeEcCCC
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVE-KGQQIYISGRLVSDVVESGDG 165 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~Lk-KGd~V~VeGrL~~~~~~dkdG 165 (207)
..|+|.|+|.. +|.. |+ ++-+.|. + .+..++|++-. +.|. .||.|.|+|.+..+.- ..|
T Consensus 14 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D----~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~~--~~~ 73 (422)
T 1n9w_A 14 QEVELLGFLHW---RRDL--GR-IQFLLLR-D----RSGVVQVVTGG-------LKLPLPESALRVRGLVVENAK--APG 73 (422)
T ss_dssp SEEEEEEEEEE---EEEC--SS-EEEEEEE-E----TTEEEEEEEES-------CCCCCTTCEEEEEEEEEECTT--STT
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E----CCEEEEEEEEc-------cccCCCCCEEEEEEEEEecCC--CCc
Confidence 46999999985 5543 54 4433333 2 23448887643 5789 9999999999977631 122
Q ss_pred cEEEEEEEEEEEEEEeeCC
Q 028557 166 QQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 166 ~~~~~~eIva~~I~~L~~k 184 (207)
.++|.|+++.+|...
T Consensus 74 ----~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 74 ----GLEVQAKEVEVLSPA 88 (422)
T ss_dssp ----SEEEEEEEEEEEECC
T ss_pred ----cEEEEEeEEEEeccC
Confidence 479999999999865
No 63
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=71.63 E-value=12 Score=35.40 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=54.0
Q ss_pred EEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchH-HHHHHHhcCCCCEEEEEEEeeeeeeEcCCCc
Q 028557 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL-AHVASQHVEKGQQIYISGRLVSDVVESGDGQ 166 (207)
Q Consensus 88 ~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~-Ae~~~~~LkKGd~V~VeGrL~~~~~~dkdG~ 166 (207)
.|+|.|+|.. +|.. |+ ++-+.|. + .+..++|++-.+. +-...+.|..||.|.|+|.+..+. ..+.+
T Consensus 18 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D----~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~--~~~~~ 84 (580)
T 1l0w_A 18 EVVLEGWVNR---RRDL--GG-LIFLDLR-D----REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRP--EPNPR 84 (580)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-E----TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECS--SCCTT
T ss_pred EEEEEEEEEE---EecC--CC-eEEEEEE-E----CCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCC--CcCcc
Confidence 5999999985 4543 43 3333333 2 2345777764432 112336799999999999998775 22111
Q ss_pred -EEEEEEEEEEEEEEeeCCC
Q 028557 167 -QQTYYKVVVQQLNFVERSS 185 (207)
Q Consensus 167 -~~~~~eIva~~I~~L~~k~ 185 (207)
+.-.++|.|+++.+|....
T Consensus 85 ~~~ge~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 85 LATGRVEVELSALEVLAEAK 104 (580)
T ss_dssp STTTTEEEEEEEEEEEECCC
T ss_pred CCCccEEEEEeEEEEeccCc
Confidence 1124899999999998654
No 64
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=70.99 E-value=11 Score=30.62 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=41.4
Q ss_pred EEEEEEEECCCceEE--EcC-CCcEEEEEEEEEecCCCCCe-EEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeee
Q 028557 88 TVHLIGVVGTPIETK--HLP-SGKVLAWTRLAVRKSATQTS-WINLTFWDELAHVASQHVEKGQQIYISGRLVSDVV 160 (207)
Q Consensus 88 ~V~LiGrL~~dPeir--~t~-nG~~va~f~LAv~r~~~~t~-wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~ 160 (207)
.|.++|.|..--+++ ... +|+......+.... ++. -+.|++||+.|+.+. ...|+.|.+.|--- ..|
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D---~sg~~i~~tLWg~~a~~~~--~~~~~vv~i~~~~v-~~f 210 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMD---TSGKVVTATLWGEDADKFD--GSRQPVLAIKGARV-SDF 210 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEEC---TTCCEEEEEEEHHHHHHCC--CTTCCEEEEEEEEE-ECT
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEEC---CCCCEEEEEEEchhhhhcc--cCCCCEEEEEEEEE-Eec
Confidence 588999987533322 222 56654433333332 233 599999999998753 57888887777533 445
No 65
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=63.80 E-value=5.3 Score=31.14 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=40.8
Q ss_pred ccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC------------CCCeE--------EEEEEEchHHHHHHHhcCC
Q 028557 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------------TQTSW--------INLTFWDELAHVASQHVEK 145 (207)
Q Consensus 86 mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~------------~~t~w--------i~V~awgk~Ae~~~~~LkK 145 (207)
..-+-|+|.|.+.+ .. ++ .+.|.|..+- +...| ++|++|+..|..+.++|+.
T Consensus 14 ~~F~Dl~~qVv~~~---~~-~~----~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~ar~~lk~ 85 (143)
T 4hik_A 14 HQRCSFYAQVIKTW---YS-DK----NFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRNYIKE 85 (143)
T ss_dssp SCEEEEEEEEEEEE---EC-SS----CEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHHHTTTCCT
T ss_pred CCeEEEEEEEEEEE---cC-CC----eEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHHHHHhhCCC
Confidence 45577888888733 11 23 3556665541 11234 7999999999999999999
Q ss_pred CCEEEEE
Q 028557 146 GQQIYIS 152 (207)
Q Consensus 146 Gd~V~Ve 152 (207)
||.|.+.
T Consensus 86 Gd~v~L~ 92 (143)
T 4hik_A 86 GDYVVMK 92 (143)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9999864
No 66
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=63.20 E-value=10 Score=32.02 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=40.5
Q ss_pred CeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeeeEcCCCcEEEEEEEEEEEEEEeeCC
Q 028557 124 TSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERS 184 (207)
Q Consensus 124 t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~~dkdG~~~~~~eIva~~I~~L~~k 184 (207)
+.-+.|.+.+++. +.++.||+|.|.|-++... . .+...+.+.|.|.+|...+..
T Consensus 197 Prsi~V~l~~dLv----d~~~PGDrV~vtGI~~~~~-~--~~~~~~~~~l~a~~I~~~~~~ 250 (279)
T 1ltl_A 197 PRQITVVLEDDLV----DTLTPGDIVRVTGTLRTVR-D--ERTKRFKNFIYGNYTEFLEQE 250 (279)
T ss_dssp CCEEEEEEEGGGT----TCCCTTCEEEEEEEEEEEE-E--TTTTEEEEEEEEEECCBC---
T ss_pred CeEEEEEEccccc----CccCCCCEEEEEEEEEEee-C--CCCceEEEEEEEEEEEEecCc
Confidence 5688999988864 5689999999999998874 2 334567888888888876543
No 67
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=62.15 E-value=24 Score=33.17 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=54.1
Q ss_pred EEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHH--HHHHhcCCCCEEEEEEEeeeeeeE--c-
Q 028557 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAH--VASQHVEKGQQIYISGRLVSDVVE--S- 162 (207)
Q Consensus 88 ~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae--~~~~~LkKGd~V~VeGrL~~~~~~--d- 162 (207)
.|+|.|+|.. +|.. |+ ++-+.|. + .+..++|++-.+..+ ...+.|..|+.|.|+|.+..+.-. +
T Consensus 17 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D----~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~ 85 (585)
T 1c0a_A 17 QVTLCGWVNR---RRDL--GS-LIFIDMR-D----REGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINR 85 (585)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-E----TTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCT
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-E----CCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccc
Confidence 5999999985 4543 43 3333333 2 234588877443222 233579999999999999876321 1
Q ss_pred --CCCcEEEEEEEEEEEEEEeeCCC
Q 028557 163 --GDGQQQTYYKVVVQQLNFVERSS 185 (207)
Q Consensus 163 --kdG~~~~~~eIva~~I~~L~~k~ 185 (207)
+.| .++|.|+++.+|....
T Consensus 86 ~~~~g----eiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 86 DMATG----EIEVLASSLTIINRAD 106 (585)
T ss_dssp TSTTT----TEEEEEEEEEEEECCC
T ss_pred cCCCc----cEEEEEeEEEEEeccC
Confidence 233 4899999999998653
No 68
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=53.78 E-value=11 Score=30.77 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=46.4
Q ss_pred EEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeeeEcCCCc
Q 028557 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQ 166 (207)
Q Consensus 88 ~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~~dkdG~ 166 (207)
...++|-|+...+.+.+.+|+.+..+.|..=.. ....+.+.+||+..+. ...+..|+.|.| |....+.+++|.
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~~--~~~~V~lfLFg~a~~~-~~k~~~G~Viai---LNP~i~~~~~~~ 129 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKD--LDKYISLFLFGDVHKE-HWKTDQGTVIGL---LNANPMKPKEGT 129 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSSS--TTCCEEEEECHHHHHH-HTTCCTTEEEEE---ESCEECCCCTTC
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecCC--CCcEEEEEEechHHHH-hcCcCCceEEEE---ECCEEccCCCCC
Confidence 567889999888888888999888877762222 2345889999996666 346899999887 444455555554
No 69
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=50.31 E-value=22 Score=30.11 Aligned_cols=70 Identities=10% Similarity=0.020 Sum_probs=47.0
Q ss_pred ccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeee
Q 028557 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVV 160 (207)
Q Consensus 86 mN~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~ 160 (207)
-..|.++|.|..--..+.+.+..-+++|+|.-... . -+.|.+|.+..+.+=.-.+.||.|.+.. ++.+.|
T Consensus 15 ~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~-~---gl~v~iF~~~~~~LP~v~~~GDII~l~~-vki~~~ 84 (294)
T 1xjv_A 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN-V---KLTCLLFSGNYEALPIIYKNGDIVRFHR-LKIQVY 84 (294)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC-C---EEEEEEEESSGGGSCCCCSTTCEEEEEE-EEEEEE
T ss_pred CCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC-C---CEEEEEECCChHHCCCCCCCCCEEEEEE-EEEEEE
Confidence 45689999997544444454446778888875443 2 2999999986666533349999888875 444456
No 70
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=47.64 E-value=19 Score=32.27 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=38.9
Q ss_pred EEEEEEEECCCceEEE--cC-CCc--EEEEEEEEEecCCCCCe-EEEEEEEchHHHHHHH--hcCCCCEEEEEEE
Q 028557 88 TVHLIGVVGTPIETKH--LP-SGK--VLAWTRLAVRKSATQTS-WINLTFWDELAHVASQ--HVEKGQQIYISGR 154 (207)
Q Consensus 88 ~V~LiGrL~~dPeir~--t~-nG~--~va~f~LAv~r~~~~t~-wi~V~awgk~Ae~~~~--~LkKGd~V~VeGr 154 (207)
.|.++|.|..--++++ .. +|+ ....+.|. +++. -++|++||+.|+.+.. ....|+.|.|.|-
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~-----D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~ 204 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLV-----DQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGV 204 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEE-----CTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESC
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEE-----eCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeE
Confidence 4778888875333333 22 465 34444444 2233 6999999999987542 2677888887774
No 71
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=34.99 E-value=85 Score=23.33 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=32.2
Q ss_pred CCcEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeeeeeEcCCCcEEEE
Q 028557 106 SGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTY 170 (207)
Q Consensus 106 nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~~~~dkdG~~~~~ 170 (207)
+.+++..|.+.-...+...-|.--.+|=. +.+.-||-|.|.|+++.. .+|+..++
T Consensus 23 G~KkviS~p~~~~e~g~~~k~~ygsaf~p------d~v~~GDivTvsgri~~k----e~G~y~ny 77 (119)
T 2wkd_A 23 GDKKIISVPLFEKEKGSNVKVAYGSAFMP------DFIQMGDTVTVSGRVQAK----ESGEYVNY 77 (119)
T ss_dssp SCEEEEEEESSCCC----CCCCEEEEECC------TTCCTTCEEEEEEEEEEC----------CE
T ss_pred CceeEEEEeeeecccCCceeeEEEEEecc------ccccCCcEEEEeceeeee----ccCceEee
Confidence 45577777766544444445655556644 678999999999999887 35654443
No 72
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=31.06 E-value=33 Score=33.30 Aligned_cols=61 Identities=13% Similarity=0.268 Sum_probs=41.6
Q ss_pred EEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhcCC--CCEEEEEEEeee
Q 028557 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEK--GQQIYISGRLVS 157 (207)
Q Consensus 88 ~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~LkK--Gd~V~VeGrL~~ 157 (207)
.+++.|.|...+.... .++....+.+. +.+..+.++.|+. .++.+.++. |+.+.|.|.++.
T Consensus 167 ~~~~~~~v~~~~~~~~--~~~~~~~~~~~-----d~~~~~~~~~f~~--~~~~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 167 KVTTQGKIVSVETKKF--QNMNILTAVLS-----DGLVHVPLKWFNQ--DYLQTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp CCEEEECCCCCEEEEC--SSCEEEEEEEC-----CSSCCEEEEECSC--CTTHHHHHTTCSSCEEEEEEECS
T ss_pred EEEEEEEEEEEEeecC--CCCeEEEEEEE-----ECCceEEEEEECc--HHHHhhCccCCCCEEEEEEEEEE
Confidence 7899999998654432 33444444332 2344678888884 245667889 999999999976
No 73
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=29.92 E-value=79 Score=24.68 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=50.7
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC--------CCCeEEEEEEEchHHHHHHHhcCCCCEEEEEEEeeee
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA--------TQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSD 158 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~--------~~t~wi~V~awgk~Ae~~~~~LkKGd~V~VeGrL~~~ 158 (207)
..|.|-|.+.- +....+ ..+..|.|. .... .-...+.|..=.... .-.--+.|.|+|+|+..
T Consensus 55 k~VripGfvvP---Le~~~~-~~vteFlLV-Py~GACiH~PPPPpNQiI~V~~~~g~~-----~~~l~~pvwV~G~L~~~ 124 (150)
T 4hsp_A 55 IEAKLPGYIVP---LEISEA-GLVTEFLLV-PYYGACIHVPPPPSNQIVYVKTAKGVQ-----MDELYQPFWVEGTFKVE 124 (150)
T ss_dssp EEEEEEEEEEE---EEECTT-SEEEEEEEE-SSTTBTTTBCCCCGGGCEEEEEEEEEE-----STTTTSCEEEEEEEECC
T ss_pred CEEEeccEEEE---eccCCC-CcEEEEEEe-CCCCcCcCCCCCCCceEEEEECCCCcc-----chhccceEEEEEEEEEe
Confidence 45888899872 322222 357888665 2221 234556665322211 11223899999999999
Q ss_pred eeEcCCCcEEEEEEEEEEEEEEee
Q 028557 159 VVESGDGQQQTYYKVVVQQLNFVE 182 (207)
Q Consensus 159 ~~~dkdG~~~~~~eIva~~I~~L~ 182 (207)
.+++.=+ ...+.+.++.|+-.+
T Consensus 125 ~~~~~l~--~~~Y~m~a~~i~~y~ 146 (150)
T 4hsp_A 125 NASSELA--AAGYRMQASKVTPYE 146 (150)
T ss_dssp CEECSSC--EESEEEEEEEEEECC
T ss_pred eecccce--eEEeEEeeeEEEEec
Confidence 9875434 466788888887654
No 74
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=28.93 E-value=47 Score=31.62 Aligned_cols=85 Identities=9% Similarity=0.117 Sum_probs=51.7
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCCeEEEEEEEchH----HHHHHHhcCCCCEEEEEEEeeeeeeEc
Q 028557 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL----AHVASQHVEKGQQIYISGRLVSDVVES 162 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t~nG~~va~f~LAv~r~~~~t~wi~V~awgk~----Ae~~~~~LkKGd~V~VeGrL~~~~~~d 162 (207)
..|+|.|+|..- | ++. |-.- +. .+..++|++=.+. +-...+.|..|+.|.|+|.+..+.-..
T Consensus 25 ~~V~l~GwV~~~---R---~~~----Fi~L-rD---~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~ 90 (617)
T 4ah6_A 25 QEVTLCGWIQYR---R---QNT----FLVL-RD---FDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQ 90 (617)
T ss_dssp CEEEEEEEECCC---C---TTT----EEEE-EC---SSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTC
T ss_pred CEEEEEEEeeee---c---CeE----EEEE-Ee---CCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccc
Confidence 369999999862 3 221 3222 22 2346777664332 223456799999999999998763111
Q ss_pred CCCc-EEEEEEEEEEEEEEeeCCC
Q 028557 163 GDGQ-QQTYYKVVVQQLNFVERSS 185 (207)
Q Consensus 163 kdG~-~~~~~eIva~~I~~L~~k~ 185 (207)
.+.+ +.-.++|.|++|.+|....
T Consensus 91 ~n~~~~tgeiEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 91 ENPKMPTGEIEIKVKTAELLNACK 114 (617)
T ss_dssp CCTTSTTTTEEEEEEEEEEEECBC
T ss_pred cCccCCCCcEEEEEeEEEEeecCC
Confidence 1110 0114899999999998654
No 75
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=25.16 E-value=1.3e+02 Score=21.26 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=23.1
Q ss_pred hcCCCCEEEEEEEeeee----eeEcCCCcEEEEEEEEE
Q 028557 142 HVEKGQQIYISGRLVSD----VVESGDGQQQTYYKVVV 175 (207)
Q Consensus 142 ~LkKGd~V~VeGrL~~~----~~~dkdG~~~~~~eIva 175 (207)
.|+.|+.|-|.|.+..- +|..++|......++.+
T Consensus 12 ~L~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l 49 (115)
T 2k50_A 12 KLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVII 49 (115)
T ss_dssp TCCTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEE
T ss_pred HCCCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEE
Confidence 47899999999988766 45567884333444443
No 76
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=24.90 E-value=92 Score=25.12 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=47.3
Q ss_pred cEEEEEEEECCCceEEEc-CCC-cEEEEEEEEEecCCCCCeEEEEEEEchHHHHHHHhc-CCCCEEEEEEEeeeeee
Q 028557 87 NTVHLIGVVGTPIETKHL-PSG-KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHV-EKGQQIYISGRLVSDVV 160 (207)
Q Consensus 87 N~V~LiGrL~~dPeir~t-~nG-~~va~f~LAv~r~~~~t~wi~V~awgk~Ae~~~~~L-kKGd~V~VeGrL~~~~~ 160 (207)
..|.++|-|..--..+.+ .+- +-++.|+|.-........=+.|.+|.+..+.+ ..+ ..||.|.+.. ++.+.|
T Consensus 43 ~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~L-P~V~~~GDIIlL~r-vkiq~~ 117 (187)
T 1qzg_A 43 TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDL-PVIKQVGQPLLLHQ-ITLRSY 117 (187)
T ss_dssp EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCS-CCCCSTTCEEEEEE-EEEEEE
T ss_pred CEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhC-CCCCCCCCEEEEEE-EEEEEE
Confidence 468999999643333344 332 47888888865532223348999998866554 445 8899999885 456666
No 77
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=20.93 E-value=63 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=21.5
Q ss_pred chHHHHHHHhcCCCCEEEEEEEeeeeee
Q 028557 133 DELAHVASQHVEKGQQIYISGRLVSDVV 160 (207)
Q Consensus 133 gk~Ae~~~~~LkKGd~V~VeGrL~~~~~ 160 (207)
|.....+.+.++.||.|.|.|-.-.-.+
T Consensus 85 G~~s~~l~~~l~~Gd~v~v~gP~G~~~~ 112 (250)
T 1tvc_A 85 GRFSDYLRNDARVGQVLSVKGPLGVFGL 112 (250)
T ss_dssp SSSHHHHHHHSSSSSEEEEEEEECCCSC
T ss_pred CCchHHHHhcCCCCCEEEEEcCcccccc
Confidence 5556667678999999999997655544
No 78
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=20.79 E-value=1.1e+02 Score=24.04 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=21.6
Q ss_pred chHHHHHHHhcCCCCEEEEEEEeeeeee
Q 028557 133 DELAHVASQHVEKGQQIYISGRLVSDVV 160 (207)
Q Consensus 133 gk~Ae~~~~~LkKGd~V~VeGrL~~~~~ 160 (207)
|.....+.+.++.||.|.|.|-.-.-..
T Consensus 83 G~~S~~l~~~l~~G~~v~v~gP~G~~~~ 110 (243)
T 4eh1_A 83 GLVSHYLHNNVKVGDSVKLYAPAGDFFY 110 (243)
T ss_dssp CHHHHHHHHHCCTTCEEEEEEEECSCCC
T ss_pred CeehhHHHhcCCCCCEEEEEccCcccCc
Confidence 6666777778999999999997654443
No 79
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=20.25 E-value=1.1e+02 Score=25.58 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.3
Q ss_pred EEEEEEEchHHHHHHHhcCCCCEEEEEE
Q 028557 126 WINLTFWDELAHVASQHVEKGQQIYISG 153 (207)
Q Consensus 126 wi~V~awgk~Ae~~~~~LkKGd~V~VeG 153 (207)
-++|.+|+..|..+ +.|+.||.|.+..
T Consensus 212 t~~V~~~d~h~~~~-~~lk~Gd~V~l~N 238 (294)
T 1xjv_A 212 TIDILVYDNHVHVA-RSLKVGSFLRIYS 238 (294)
T ss_dssp SEEEEEETTHHHHH-HHCCTTCEEEEEE
T ss_pred eEEEEEEcchhHHH-hcCCCCcEEEEee
Confidence 47899999988766 4899999999887
Done!