Query 028558
Match_columns 207
No_of_seqs 212 out of 2759
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 13:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4109 Predicted transcriptio 99.7 1.6E-17 3.4E-22 139.9 6.8 161 5-206 112-278 (432)
2 PRK14869 putative manganese-de 99.5 1.2E-13 2.6E-18 126.2 8.9 175 8-207 182-367 (546)
3 COG2524 Predicted transcriptio 99.5 9.5E-14 2.1E-18 112.8 6.3 112 9-141 179-290 (294)
4 COG2524 Predicted transcriptio 99.4 5E-13 1.1E-17 108.6 8.0 95 81-207 170-264 (294)
5 COG2905 Predicted signal-trans 99.4 1.2E-12 2.5E-17 116.5 7.4 115 8-141 155-269 (610)
6 COG3448 CBS-domain-containing 99.3 2.3E-12 4.9E-17 106.8 6.7 111 73-207 235-345 (382)
7 cd04603 CBS_pair_KefB_assoc Th 99.3 1.1E-11 2.3E-16 89.5 8.3 108 12-139 3-110 (111)
8 cd04619 CBS_pair_6 The CBS dom 99.3 1.2E-11 2.5E-16 89.6 7.8 111 12-139 3-113 (114)
9 PRK10892 D-arabinose 5-phospha 99.2 4.6E-11 1E-15 102.5 10.3 100 81-207 200-299 (326)
10 cd04618 CBS_pair_5 The CBS dom 99.2 2.9E-11 6.2E-16 85.9 6.5 93 12-139 3-97 (98)
11 PF00571 CBS: CBS domain CBS d 99.2 3.5E-11 7.7E-16 76.7 6.1 55 85-141 1-55 (57)
12 COG3620 Predicted transcriptio 99.2 2.2E-11 4.8E-16 92.5 5.7 97 81-206 63-159 (187)
13 cd04617 CBS_pair_4 The CBS dom 99.2 6.3E-11 1.4E-15 86.2 7.6 113 11-139 2-117 (118)
14 COG3448 CBS-domain-containing 99.2 4E-11 8.7E-16 99.5 6.6 118 9-141 252-371 (382)
15 cd04641 CBS_pair_28 The CBS do 99.2 6.4E-11 1.4E-15 86.4 7.0 112 11-139 2-119 (120)
16 cd04600 CBS_pair_HPP_assoc Thi 99.2 1.3E-10 2.7E-15 84.9 8.1 115 10-139 2-123 (124)
17 PRK11543 gutQ D-arabinose 5-ph 99.2 1.6E-10 3.4E-15 98.9 9.6 96 82-207 196-293 (321)
18 PRK10892 D-arabinose 5-phospha 99.2 1.3E-10 2.9E-15 99.6 8.7 111 11-140 213-323 (326)
19 cd04607 CBS_pair_NTP_transfera 99.1 2.4E-10 5.2E-15 82.2 8.5 108 13-139 5-112 (113)
20 cd04630 CBS_pair_17 The CBS do 99.1 2.1E-10 4.6E-15 82.8 8.1 111 11-139 2-113 (114)
21 cd04587 CBS_pair_CAP-ED_DUF294 99.1 2E-10 4.4E-15 82.3 7.5 111 11-139 2-112 (113)
22 PRK07807 inosine 5-monophospha 99.1 1.6E-10 3.4E-15 103.8 8.2 109 10-142 97-205 (479)
23 TIGR03520 GldE gliding motilit 99.1 2.9E-10 6.2E-15 100.6 9.8 103 70-206 180-283 (408)
24 cd04640 CBS_pair_27 The CBS do 99.1 1.1E-10 2.4E-15 86.0 5.9 114 11-139 2-125 (126)
25 cd04801 CBS_pair_M50_like This 99.1 2E-10 4.4E-15 82.7 7.2 110 12-139 3-113 (114)
26 cd04590 CBS_pair_CorC_HlyC_ass 99.1 2.3E-10 5.1E-15 81.8 7.4 109 10-139 1-110 (111)
27 PRK11543 gutQ D-arabinose 5-ph 99.1 2.5E-10 5.4E-15 97.7 8.8 111 11-140 208-318 (321)
28 TIGR00393 kpsF KpsF/GutQ famil 99.1 3.1E-10 6.8E-15 94.5 9.1 95 83-207 155-250 (268)
29 cd04627 CBS_pair_14 The CBS do 99.1 2.9E-10 6.2E-15 83.3 7.8 112 11-138 2-121 (123)
30 PRK15094 magnesium/cobalt effl 99.1 3.6E-10 7.9E-15 95.7 9.1 99 79-207 63-162 (292)
31 cd04593 CBS_pair_EriC_assoc_ba 99.1 4.1E-10 8.8E-15 81.3 8.1 110 12-139 3-114 (115)
32 cd04630 CBS_pair_17 The CBS do 99.1 9.2E-10 2E-14 79.4 9.9 88 94-207 2-90 (114)
33 cd04619 CBS_pair_6 The CBS dom 99.1 9.1E-10 2E-14 79.6 9.9 88 94-207 2-89 (114)
34 cd04603 CBS_pair_KefB_assoc Th 99.1 9.3E-10 2E-14 79.2 9.6 85 94-207 2-86 (111)
35 cd04608 CBS_pair_PALP_assoc Th 99.1 8.5E-11 1.9E-15 86.8 4.2 112 11-140 3-123 (124)
36 cd04605 CBS_pair_MET2_assoc Th 99.1 1.2E-09 2.5E-14 78.0 10.0 83 94-207 3-85 (110)
37 cd04582 CBS_pair_ABC_OpuCA_ass 99.1 4.5E-10 9.7E-15 79.7 7.7 104 11-139 2-105 (106)
38 cd04596 CBS_pair_DRTGG_assoc T 99.1 4.1E-10 8.9E-15 80.4 7.3 105 11-139 3-107 (108)
39 cd04615 CBS_pair_2 The CBS dom 99.1 5E-10 1.1E-14 80.3 7.6 110 12-139 3-112 (113)
40 cd04596 CBS_pair_DRTGG_assoc T 99.1 9.7E-10 2.1E-14 78.5 9.0 81 94-207 3-83 (108)
41 cd04614 CBS_pair_1 The CBS dom 99.1 5.2E-10 1.1E-14 78.9 7.4 94 11-139 2-95 (96)
42 cd04583 CBS_pair_ABC_OpuCA_ass 99.1 4.6E-10 1E-14 79.8 7.0 105 12-139 4-108 (109)
43 cd04623 CBS_pair_10 The CBS do 99.1 1.9E-09 4.1E-14 77.0 10.3 88 94-207 2-89 (113)
44 cd04608 CBS_pair_PALP_assoc Th 99.1 9.7E-10 2.1E-14 81.1 8.9 85 94-205 3-87 (124)
45 cd04643 CBS_pair_30 The CBS do 99.1 1.3E-09 2.9E-14 78.4 9.4 92 94-207 2-93 (116)
46 cd04602 CBS_pair_IMPDH_2 This 99.1 4E-10 8.6E-15 81.4 6.6 106 11-139 3-113 (114)
47 PRK01862 putative voltage-gate 99.1 5.4E-10 1.2E-14 102.9 9.0 99 80-207 444-542 (574)
48 cd04588 CBS_pair_CAP-ED_DUF294 99.1 7.3E-10 1.6E-14 79.1 7.8 108 11-139 2-109 (110)
49 cd04595 CBS_pair_DHH_polyA_Pol 99.1 6.1E-10 1.3E-14 79.6 7.4 107 11-139 3-109 (110)
50 TIGR00400 mgtE Mg2+ transporte 99.1 3.4E-10 7.4E-15 101.3 7.3 108 10-141 139-251 (449)
51 cd04617 CBS_pair_4 The CBS dom 99.1 2E-09 4.3E-14 78.3 10.1 87 94-207 2-90 (118)
52 cd04618 CBS_pair_5 The CBS dom 99.0 1.6E-09 3.4E-14 76.9 9.0 70 94-207 2-72 (98)
53 cd04613 CBS_pair_SpoIVFB_EriC_ 99.0 1.6E-09 3.5E-14 77.5 9.2 87 94-207 2-88 (114)
54 cd04642 CBS_pair_29 The CBS do 99.0 6.9E-10 1.5E-14 81.6 7.4 112 12-139 3-125 (126)
55 PRK07807 inosine 5-monophospha 99.0 9.1E-10 2E-14 99.0 9.6 91 82-207 88-178 (479)
56 cd04605 CBS_pair_MET2_assoc Th 99.0 1.1E-09 2.3E-14 78.2 8.2 107 11-139 3-109 (110)
57 PRK07107 inosine 5-monophospha 99.0 6E-10 1.3E-14 100.6 8.3 112 13-141 108-219 (502)
58 cd04592 CBS_pair_EriC_assoc_eu 99.0 2.5E-09 5.4E-14 80.3 10.4 98 94-207 2-108 (133)
59 cd04593 CBS_pair_EriC_assoc_ba 99.0 2.5E-09 5.4E-14 77.1 10.1 87 94-207 2-88 (115)
60 cd04626 CBS_pair_13 The CBS do 99.0 2E-09 4.4E-14 77.0 9.5 86 94-207 2-87 (111)
61 cd04643 CBS_pair_30 The CBS do 99.0 7.1E-10 1.5E-14 79.8 7.1 110 12-139 3-115 (116)
62 cd04620 CBS_pair_7 The CBS dom 99.0 9.7E-10 2.1E-14 79.2 7.8 109 12-139 3-114 (115)
63 cd04639 CBS_pair_26 The CBS do 99.0 1.9E-09 4.1E-14 77.1 9.2 85 94-207 2-86 (111)
64 cd04582 CBS_pair_ABC_OpuCA_ass 99.0 2.7E-09 5.8E-14 75.7 9.9 80 94-207 2-81 (106)
65 cd04629 CBS_pair_16 The CBS do 99.0 5.3E-10 1.2E-14 80.2 6.3 111 12-139 3-113 (114)
66 cd04623 CBS_pair_10 The CBS do 99.0 1.2E-09 2.5E-14 78.1 8.0 110 12-139 3-112 (113)
67 cd04600 CBS_pair_HPP_assoc Thi 99.0 2.7E-09 5.8E-14 77.8 10.1 97 94-207 3-99 (124)
68 cd04604 CBS_pair_KpsF_GutQ_ass 99.0 1.5E-09 3.2E-14 77.8 8.5 110 12-139 4-113 (114)
69 cd04586 CBS_pair_BON_assoc Thi 99.0 5.5E-10 1.2E-14 83.1 6.5 115 10-139 2-134 (135)
70 cd04624 CBS_pair_11 The CBS do 99.0 3.4E-09 7.3E-14 75.9 10.3 85 94-206 2-86 (112)
71 cd04803 CBS_pair_15 The CBS do 99.0 1E-09 2.2E-14 79.8 7.6 112 12-139 3-121 (122)
72 cd04635 CBS_pair_22 The CBS do 99.0 7.8E-10 1.7E-14 80.4 6.9 114 12-139 3-121 (122)
73 TIGR01303 IMP_DH_rel_1 IMP deh 99.0 6.5E-10 1.4E-14 99.8 7.8 106 11-141 97-202 (475)
74 cd04629 CBS_pair_16 The CBS do 99.0 2.4E-09 5.1E-14 76.8 9.2 89 94-207 2-90 (114)
75 cd04626 CBS_pair_13 The CBS do 99.0 1.1E-09 2.3E-14 78.4 7.4 109 11-139 2-110 (111)
76 cd04801 CBS_pair_M50_like This 99.0 3.1E-09 6.6E-14 76.5 9.8 85 94-207 2-89 (114)
77 cd04611 CBS_pair_PAS_GGDEF_DUF 99.0 1.5E-09 3.1E-14 77.5 7.8 109 11-139 2-110 (111)
78 cd04639 CBS_pair_26 The CBS do 99.0 1.1E-09 2.3E-14 78.4 7.1 108 12-139 3-110 (111)
79 cd04583 CBS_pair_ABC_OpuCA_ass 99.0 4.3E-09 9.2E-14 74.8 10.1 81 94-206 3-83 (109)
80 cd04607 CBS_pair_NTP_transfera 99.0 4.4E-09 9.6E-14 75.6 10.2 86 94-207 3-88 (113)
81 cd04610 CBS_pair_ParBc_assoc T 99.0 1.4E-09 3E-14 77.2 7.3 104 11-139 3-106 (107)
82 cd04641 CBS_pair_28 The CBS do 99.0 4.6E-09 1E-13 76.4 10.2 94 94-207 2-95 (120)
83 TIGR01137 cysta_beta cystathio 99.0 2.1E-09 4.6E-14 96.1 10.0 98 80-206 332-429 (454)
84 cd04622 CBS_pair_9 The CBS dom 99.0 1.8E-09 4E-14 77.3 7.8 110 12-139 3-112 (113)
85 cd04624 CBS_pair_11 The CBS do 99.0 2.5E-09 5.4E-14 76.6 8.5 109 12-139 3-111 (112)
86 PRK05567 inosine 5'-monophosph 99.0 5.1E-09 1.1E-13 94.6 12.5 161 2-207 13-178 (486)
87 PLN02274 inosine-5'-monophosph 99.0 1.2E-09 2.5E-14 98.9 8.3 115 10-145 108-225 (505)
88 cd04599 CBS_pair_GGDEF_assoc2 99.0 4.2E-09 9E-14 74.4 9.4 80 94-207 2-81 (105)
89 cd04621 CBS_pair_8 The CBS dom 99.0 3.8E-09 8.3E-14 79.1 9.6 106 94-206 2-110 (135)
90 cd04601 CBS_pair_IMPDH This cd 99.0 1.8E-09 3.9E-14 76.9 7.5 105 12-139 4-109 (110)
91 cd04606 CBS_pair_Mg_transporte 99.0 1.8E-09 3.9E-14 77.2 7.5 102 15-140 2-108 (109)
92 cd04621 CBS_pair_8 The CBS dom 99.0 2.1E-09 4.7E-14 80.5 8.0 111 12-139 3-134 (135)
93 cd04632 CBS_pair_19 The CBS do 99.0 4.7E-09 1E-13 77.2 9.7 100 94-207 2-101 (128)
94 PTZ00314 inosine-5'-monophosph 99.0 7.7E-09 1.7E-13 93.5 13.0 161 2-207 22-191 (495)
95 cd04631 CBS_pair_18 The CBS do 99.0 1.6E-09 3.5E-14 79.1 6.9 112 12-139 3-124 (125)
96 cd04585 CBS_pair_ACT_assoc2 Th 99.0 2.2E-09 4.8E-14 77.6 7.4 113 12-139 3-121 (122)
97 cd04615 CBS_pair_2 The CBS dom 99.0 7E-09 1.5E-13 74.3 10.0 86 94-206 2-87 (113)
98 TIGR01302 IMP_dehydrog inosine 99.0 1.1E-08 2.3E-13 91.7 13.2 90 84-207 81-174 (450)
99 cd04586 CBS_pair_BON_assoc Thi 99.0 4.3E-09 9.3E-14 78.3 9.0 104 94-207 3-111 (135)
100 cd04599 CBS_pair_GGDEF_assoc2 99.0 2.5E-09 5.5E-14 75.5 7.4 103 11-139 2-104 (105)
101 cd04803 CBS_pair_15 The CBS do 99.0 5.2E-09 1.1E-13 76.1 9.1 96 94-207 2-97 (122)
102 cd04613 CBS_pair_SpoIVFB_EriC_ 99.0 2.6E-09 5.6E-14 76.4 7.4 110 12-139 3-113 (114)
103 cd04800 CBS_pair_CAP-ED_DUF294 99.0 2.8E-09 6.1E-14 76.2 7.3 109 11-139 2-110 (111)
104 cd04636 CBS_pair_23 The CBS do 99.0 2.4E-09 5.2E-14 79.3 7.2 111 12-139 3-131 (132)
105 cd04595 CBS_pair_DHH_polyA_Pol 99.0 8.8E-09 1.9E-13 73.5 9.8 84 94-207 3-86 (110)
106 cd04625 CBS_pair_12 The CBS do 98.9 2.5E-09 5.5E-14 76.5 6.8 109 12-139 3-111 (112)
107 cd04800 CBS_pair_CAP-ED_DUF294 98.9 1E-08 2.3E-13 73.2 10.0 86 94-207 2-87 (111)
108 PRK05567 inosine 5'-monophosph 98.9 4.4E-09 9.5E-14 95.0 9.7 109 10-141 95-204 (486)
109 TIGR00400 mgtE Mg2+ transporte 98.9 4.3E-09 9.3E-14 94.2 9.4 93 80-207 128-225 (449)
110 cd04604 CBS_pair_KpsF_GutQ_ass 98.9 7.6E-09 1.6E-13 74.1 9.0 87 93-206 2-88 (114)
111 cd04587 CBS_pair_CAP-ED_DUF294 98.9 1.2E-08 2.6E-13 73.0 10.0 87 94-207 2-88 (113)
112 cd04612 CBS_pair_SpoIVFB_EriC_ 98.9 3.8E-09 8.3E-14 75.3 7.3 108 12-139 3-110 (111)
113 cd04636 CBS_pair_23 The CBS do 98.9 8.4E-09 1.8E-13 76.4 9.3 107 94-207 2-108 (132)
114 cd04612 CBS_pair_SpoIVFB_EriC_ 98.9 9.7E-09 2.1E-13 73.2 9.3 85 94-207 2-86 (111)
115 cd04635 CBS_pair_22 The CBS do 98.9 8.1E-09 1.8E-13 75.0 9.0 96 94-207 2-97 (122)
116 cd04589 CBS_pair_CAP-ED_DUF294 98.9 1.4E-08 3.1E-13 72.5 10.0 86 94-207 2-87 (111)
117 cd04632 CBS_pair_19 The CBS do 98.9 4E-09 8.6E-14 77.6 7.2 113 12-139 3-127 (128)
118 cd04802 CBS_pair_3 The CBS dom 98.9 6.1E-09 1.3E-13 74.5 7.8 109 12-139 3-111 (112)
119 cd04611 CBS_pair_PAS_GGDEF_DUF 98.9 1.7E-08 3.7E-13 71.9 10.2 85 94-207 2-86 (111)
120 cd04588 CBS_pair_CAP-ED_DUF294 98.9 1.6E-08 3.5E-13 72.0 9.9 83 94-206 2-84 (110)
121 cd04594 CBS_pair_EriC_assoc_ar 98.9 3.5E-09 7.5E-14 75.2 6.3 100 13-139 4-103 (104)
122 cd04637 CBS_pair_24 The CBS do 98.9 2.6E-09 5.6E-14 77.7 5.8 113 10-139 1-121 (122)
123 cd04642 CBS_pair_29 The CBS do 98.9 1.3E-08 2.8E-13 74.8 9.6 100 94-207 2-101 (126)
124 cd04633 CBS_pair_20 The CBS do 98.9 3.7E-09 8E-14 76.7 6.5 111 11-139 2-120 (121)
125 COG0517 FOG: CBS domain [Gener 98.9 6.3E-09 1.4E-13 74.8 7.5 109 10-138 7-117 (117)
126 cd04589 CBS_pair_CAP-ED_DUF294 98.9 7.4E-09 1.6E-13 74.1 7.8 108 12-139 3-110 (111)
127 cd04631 CBS_pair_18 The CBS do 98.9 1.1E-08 2.5E-13 74.5 8.8 98 94-207 2-100 (125)
128 cd04584 CBS_pair_ACT_assoc Thi 98.9 4.3E-09 9.3E-14 76.3 6.5 111 12-139 3-120 (121)
129 cd04594 CBS_pair_EriC_assoc_ar 98.9 1.5E-08 3.4E-13 71.9 9.2 77 96-207 4-80 (104)
130 cd04614 CBS_pair_1 The CBS dom 98.9 1.7E-08 3.7E-13 71.1 9.3 70 94-207 2-71 (96)
131 PRK11573 hypothetical protein; 98.9 1E-08 2.2E-13 90.8 9.6 100 79-206 183-283 (413)
132 PLN02274 inosine-5'-monophosph 98.9 3.4E-08 7.5E-13 89.4 13.0 87 86-206 103-194 (505)
133 cd04627 CBS_pair_14 The CBS do 98.9 2.4E-08 5.2E-13 72.9 10.0 96 94-207 2-98 (123)
134 cd04802 CBS_pair_3 The CBS dom 98.9 2.9E-08 6.4E-13 70.9 10.0 87 94-207 2-88 (112)
135 cd04598 CBS_pair_GGDEF_assoc T 98.9 2E-08 4.3E-13 72.6 9.0 88 94-206 2-90 (119)
136 PTZ00314 inosine-5'-monophosph 98.9 6.5E-09 1.4E-13 94.0 7.7 114 11-142 105-218 (495)
137 cd04601 CBS_pair_IMPDH This cd 98.9 1.9E-08 4E-13 71.5 8.6 82 94-207 3-85 (110)
138 cd04584 CBS_pair_ACT_assoc Thi 98.9 2.4E-08 5.1E-13 72.3 9.2 96 94-207 2-97 (121)
139 cd04638 CBS_pair_25 The CBS do 98.8 2.9E-08 6.3E-13 70.4 9.4 81 94-207 2-82 (106)
140 COG2905 Predicted signal-trans 98.8 6.2E-09 1.4E-13 93.1 7.1 98 80-206 146-243 (610)
141 cd04585 CBS_pair_ACT_assoc2 Th 98.8 2.8E-08 6E-13 71.7 9.4 96 94-207 2-97 (122)
142 PRK07107 inosine 5-monophospha 98.8 1E-08 2.2E-13 92.7 8.5 93 84-207 95-193 (502)
143 cd04625 CBS_pair_12 The CBS do 98.8 3.5E-08 7.5E-13 70.6 9.7 87 94-207 2-88 (112)
144 cd04610 CBS_pair_ParBc_assoc T 98.8 3.1E-08 6.7E-13 70.1 9.3 79 94-206 3-81 (107)
145 cd04622 CBS_pair_9 The CBS dom 98.8 4E-08 8.6E-13 70.3 9.8 86 94-206 2-87 (113)
146 COG3620 Predicted transcriptio 98.8 3.7E-09 8E-14 80.5 4.4 112 9-141 72-183 (187)
147 cd04609 CBS_pair_PALP_assoc2 T 98.8 1E-08 2.2E-13 72.8 6.5 108 11-139 2-109 (110)
148 TIGR01303 IMP_DH_rel_1 IMP deh 98.8 1.5E-08 3.3E-13 91.0 9.1 112 51-207 64-176 (475)
149 TIGR01302 IMP_dehydrog inosine 98.8 9.1E-09 2E-13 92.2 7.5 108 11-141 89-200 (450)
150 cd04606 CBS_pair_Mg_transporte 98.8 1.9E-08 4.1E-13 71.9 7.8 76 98-206 2-82 (109)
151 cd04602 CBS_pair_IMPDH_2 This 98.8 3.6E-08 7.8E-13 71.0 9.2 82 94-207 3-89 (114)
152 cd04609 CBS_pair_PALP_assoc2 T 98.8 3.5E-08 7.6E-13 70.0 9.0 84 94-205 2-85 (110)
153 cd04590 CBS_pair_CorC_HlyC_ass 98.8 4.3E-08 9.4E-13 69.9 9.4 84 94-207 2-86 (111)
154 TIGR00393 kpsF KpsF/GutQ famil 98.8 1.9E-08 4.1E-13 83.8 8.3 103 12-133 166-268 (268)
155 cd04640 CBS_pair_27 The CBS do 98.8 2.1E-08 4.5E-13 73.8 7.5 90 94-207 2-100 (126)
156 cd04637 CBS_pair_24 The CBS do 98.8 3.6E-08 7.8E-13 71.6 8.6 96 94-207 2-97 (122)
157 cd04633 CBS_pair_20 The CBS do 98.8 5.1E-08 1.1E-12 70.6 9.3 96 94-207 2-97 (121)
158 cd04634 CBS_pair_21 The CBS do 98.8 1.5E-08 3.3E-13 76.4 6.8 111 11-139 2-142 (143)
159 cd04638 CBS_pair_25 The CBS do 98.8 2.1E-08 4.6E-13 71.2 7.1 103 12-139 3-105 (106)
160 PRK01862 putative voltage-gate 98.8 1.8E-08 3.8E-13 92.9 8.3 112 12-141 457-570 (574)
161 PRK15094 magnesium/cobalt effl 98.8 4.4E-08 9.5E-13 83.1 10.0 111 11-141 78-188 (292)
162 COG1253 TlyC Hemolysins and re 98.8 4.9E-08 1.1E-12 87.0 10.5 98 79-206 202-300 (429)
163 cd02205 CBS_pair The CBS domai 98.8 5.3E-08 1.2E-12 68.5 8.2 110 12-139 3-112 (113)
164 cd04620 CBS_pair_7 The CBS dom 98.7 1.1E-07 2.3E-12 68.4 9.5 86 94-207 2-90 (115)
165 cd04634 CBS_pair_21 The CBS do 98.7 8.2E-08 1.8E-12 72.4 9.3 110 94-207 2-119 (143)
166 cd04591 CBS_pair_EriC_assoc_eu 98.7 6.4E-08 1.4E-12 69.2 8.1 76 94-207 3-81 (105)
167 cd04591 CBS_pair_EriC_assoc_eu 98.7 3.2E-08 6.8E-13 70.8 6.3 98 12-139 4-104 (105)
168 COG0517 FOG: CBS domain [Gener 98.7 1.8E-07 4E-12 67.1 10.3 88 87-205 3-90 (117)
169 cd04598 CBS_pair_GGDEF_assoc T 98.7 4.9E-08 1.1E-12 70.5 7.1 111 12-139 3-118 (119)
170 cd02205 CBS_pair The CBS domai 98.7 1.7E-07 3.8E-12 65.8 9.6 86 94-206 2-87 (113)
171 TIGR03520 GldE gliding motilit 98.7 2.1E-07 4.6E-12 82.4 10.8 109 11-141 202-310 (408)
172 PRK14869 putative manganese-de 98.6 2.8E-07 6.1E-12 84.4 10.4 57 83-141 68-124 (546)
173 cd04597 CBS_pair_DRTGG_assoc2 98.6 1E-07 2.2E-12 69.3 5.9 55 83-139 58-112 (113)
174 COG2239 MgtE Mg/Co/Ni transpor 98.6 1.5E-07 3.3E-12 83.8 7.6 91 82-207 131-226 (451)
175 COG4109 Predicted transcriptio 98.5 5.9E-07 1.3E-11 76.6 7.4 79 52-143 229-307 (432)
176 TIGR01137 cysta_beta cystathio 98.4 6.4E-07 1.4E-11 80.2 7.5 110 10-140 343-452 (454)
177 cd04592 CBS_pair_EriC_assoc_eu 98.2 2.3E-06 5.1E-11 64.1 5.3 99 12-125 3-118 (133)
178 COG4536 CorB Putative Mg2+ and 98.2 2E-06 4.4E-11 73.9 5.5 100 79-206 196-296 (423)
179 smart00116 CBS Domain in cysta 98.2 5.8E-06 1.3E-10 49.1 5.9 46 95-140 2-47 (49)
180 COG2239 MgtE Mg/Co/Ni transpor 98.1 4.8E-06 1E-10 74.3 6.0 108 10-141 140-252 (451)
181 KOG1764 5'-AMP-activated prote 98.1 7.8E-06 1.7E-10 71.8 6.3 115 12-141 239-358 (381)
182 PRK10070 glycine betaine trans 98.0 2.1E-05 4.5E-10 69.6 7.7 103 15-141 290-392 (400)
183 TIGR01186 proV glycine betaine 98.0 2.1E-05 4.5E-10 68.7 7.2 100 18-141 258-357 (363)
184 COG4535 CorC Putative Mg2+ and 97.9 1E-05 2.2E-10 65.7 3.4 94 81-204 65-159 (293)
185 PRK11573 hypothetical protein; 97.8 0.00011 2.4E-09 65.3 9.4 113 11-141 198-310 (413)
186 KOG2550 IMP dehydrogenase/GMP 97.8 5E-05 1.1E-09 66.2 6.4 110 12-141 118-227 (503)
187 KOG0474 Cl- channel CLC-7 and 97.8 2.5E-05 5.4E-10 71.2 4.4 127 79-207 578-720 (762)
188 COG1253 TlyC Hemolysins and re 97.7 0.00047 1E-08 61.6 11.5 112 10-141 216-327 (429)
189 KOG2550 IMP dehydrogenase/GMP 97.6 7.7E-05 1.7E-09 65.0 5.0 81 94-206 117-200 (503)
190 PRK10070 glycine betaine trans 97.3 0.0013 2.9E-08 58.2 9.1 93 82-206 273-366 (400)
191 TIGR01186 proV glycine betaine 97.2 0.0027 5.9E-08 55.5 9.5 82 94-207 251-332 (363)
192 KOG1764 5'-AMP-activated prote 97.2 0.0019 4E-08 56.9 8.0 164 13-206 165-331 (381)
193 KOG0474 Cl- channel CLC-7 and 96.4 0.0055 1.2E-07 56.3 5.1 54 84-139 691-744 (762)
194 PF07085 DRTGG: DRTGG domain; 95.5 0.0017 3.6E-08 46.5 -1.7 50 22-73 51-103 (105)
195 COG4535 CorC Putative Mg2+ and 95.3 0.048 1E-06 44.8 5.8 57 82-141 132-188 (293)
196 KOG0475 Cl- channel CLC-3 and 95.3 0.11 2.4E-06 48.0 8.6 113 86-207 546-669 (696)
197 PF00571 CBS: CBS domain CBS d 95.0 0.018 3.9E-07 35.8 2.1 29 179-207 1-29 (57)
198 COG4536 CorB Putative Mg2+ and 94.8 0.23 5.1E-06 43.4 9.0 59 83-141 265-323 (423)
199 TIGR03415 ABC_choXWV_ATP choli 94.4 0.089 1.9E-06 46.4 5.6 53 84-141 327-379 (382)
200 COG4175 ProV ABC-type proline/ 93.0 0.27 5.8E-06 42.4 5.8 51 88-141 332-382 (386)
201 KOG0476 Cl- channel CLC-2 and 92.1 0.16 3.5E-06 48.0 3.7 59 81-141 586-646 (931)
202 COG1125 OpuBA ABC-type proline 91.1 0.45 9.9E-06 39.9 5.0 78 62-139 226-307 (309)
203 KOG0475 Cl- channel CLC-3 and 90.6 0.68 1.5E-05 43.0 6.0 56 82-140 638-693 (696)
204 KOG0476 Cl- channel CLC-2 and 82.8 2.2 4.9E-05 40.6 4.9 57 84-142 802-858 (931)
205 KOG2118 Predicted membrane pro 80.3 1.3 2.9E-05 40.4 2.6 98 80-205 201-301 (498)
206 TIGR03415 ABC_choXWV_ATP choli 79.5 4.2 9E-05 36.0 5.3 85 79-206 270-354 (382)
207 cd04597 CBS_pair_DRTGG_assoc2 79.0 1.9 4E-05 30.7 2.5 31 177-207 58-88 (113)
208 COG4175 ProV ABC-type proline/ 76.2 3.4 7.3E-05 35.8 3.6 78 58-139 252-330 (386)
209 PRK05632 phosphate acetyltrans 70.7 1.5 3.2E-05 41.8 0.2 61 7-74 245-317 (684)
210 PF02603 Hpr_kinase_N: HPr Ser 70.4 1.9 4.1E-05 31.9 0.7 42 22-65 71-114 (127)
211 COG2216 KdpB High-affinity K+ 56.1 25 0.00054 32.6 5.1 37 103-140 414-450 (681)
212 PF05198 IF3_N: Translation in 50.9 27 0.00059 23.4 3.6 25 116-140 12-36 (76)
213 PF14827 Cache_3: Sensory doma 47.8 21 0.00045 25.5 2.9 19 117-135 92-110 (116)
214 PF13365 Trypsin_2: Trypsin-li 37.8 26 0.00056 24.3 2.0 20 112-131 101-120 (120)
215 PRK05428 HPr kinase/phosphoryl 34.5 19 0.00042 30.9 1.0 42 22-65 72-115 (308)
216 PF02743 Cache_1: Cache domain 34.2 50 0.0011 21.6 2.9 17 118-134 18-34 (81)
217 PF14044 NETI: NETI protein 28.0 58 0.0013 20.6 2.1 19 189-207 3-21 (57)
218 TIGR00679 hpr-ser Hpr(Ser) kin 26.0 44 0.00096 28.7 1.8 41 23-65 73-115 (304)
219 PRK10638 glutaredoxin 3; Provi 26.0 1.3E+02 0.0029 19.7 3.9 28 110-139 44-71 (83)
220 PF13596 PAS_10: PAS domain; P 25.8 66 0.0014 22.0 2.4 17 116-132 83-99 (106)
221 PHA00673 acetyltransferase dom 24.2 1.8E+02 0.004 22.2 4.7 36 102-137 40-75 (154)
222 PF13673 Acetyltransf_10: Acet 24.1 1.5E+02 0.0033 20.1 4.1 28 108-135 35-62 (117)
223 PF00944 Peptidase_S3: Alphavi 23.8 75 0.0016 24.0 2.4 21 114-134 105-125 (158)
224 PF12282 H_kinase_N: Signal tr 20.1 86 0.0019 23.6 2.2 20 115-135 105-124 (145)
No 1
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.71 E-value=1.6e-17 Score=139.89 Aligned_cols=161 Identities=22% Similarity=0.299 Sum_probs=143.3
Q ss_pred ccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhhhcc---CC
Q 028558 5 VLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSA---AP 78 (207)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~~~~---~~ 78 (207)
.-|+++.+|+.|.+++. .|+++| .++++|| |+.++.++ .+.+..+++++ |.|| +.++..+.+++ ..
T Consensus 112 ~~~g~LlIVGnR~~iq~-----lAL~~~-~AVLvTG-GF~~s~evi~lAne~~lPvls-tsYDTFTVAtmIN~Al~n~lI 183 (432)
T COG4109 112 LDPGGLLIVGNREDIQL-----LALENG-NAVLVTG-GFDVSDEVIKLANEKGLPVLS-TSYDTFTVATMINKALSNQLI 183 (432)
T ss_pred cCCCceEEEecHHHHHH-----HHHhcC-CeEEEeC-CCCccHHHHHhhcccCCceEE-ecccceeHHHHHHHHHHHhhh
Confidence 45899999999998877 899886 4688898 99999999 89999999999 9999 98988888765 23
Q ss_pred CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
+.+-++|+++|+|..+..++.+++++.+..++..+.++++|||+|...+++|+||.+|+...
T Consensus 184 KkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~------------------ 245 (432)
T COG4109 184 KKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK------------------ 245 (432)
T ss_pred hhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC------------------
Confidence 45677999999987789999999999999999999999999999999999999999999873
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
.++.++..+|++.|+++.+.+++..++++|.-.
T Consensus 246 ---------------~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE 278 (432)
T COG4109 246 ---------------KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWE 278 (432)
T ss_pred ---------------CCCccHHHHhccCCeeecccchHHHHHHHHHhc
Confidence 256789999999999999999999999999643
No 2
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.47 E-value=1.2e-13 Score=126.24 Aligned_cols=175 Identities=21% Similarity=0.297 Sum_probs=124.2
Q ss_pred cccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhhhccCCCCCccc
Q 028558 8 HSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYT 84 (207)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~~~~~~~~~~~~ 84 (207)
+.+-+++.|.+.+ ..|++.|++|+|+|+ |..+.+.+ .+++.+++++. |++| +.+.+.+..+. +
T Consensus 182 ~~lvi~gdr~d~~-----~~ai~~~~~~lIlt~-g~~~~~~v~~la~~~~i~ii~-t~~dt~~t~~~l~~~~-------~ 247 (546)
T PRK14869 182 GDIVIVGDREDIQ-----LAAIEAGVRLLIITG-GAPVSEDVLELAKENGVTVIS-TPYDTFTTARLINQSI-------P 247 (546)
T ss_pred CCEEEEcCcHHHH-----HHHHHcCCCEEEECC-CCCCCHHHHHHHHhCCCeEEE-ecccHHHHHHHhhcCC-------C
Confidence 3333444454443 378999999999998 77777766 56788999999 9999 77777776654 6
Q ss_pred cccccc-ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh-
Q 028558 85 VGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK- 162 (207)
Q Consensus 85 v~~vm~-~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~- 162 (207)
|+++|+ + ++.++++++++.++.+.|.+++++++||+|++|+++|+||.+|+.+.... .+...+++..
T Consensus 248 V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~---------~~iLVD~~e~~ 316 (546)
T PRK14869 248 VSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRK---------KVILVDHNEKS 316 (546)
T ss_pred HHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccC---------ceEEEcCcccc
Confidence 999999 7 89999999999999999999999999999999999999999999974311 0011111110
Q ss_pred h-HHHHHH--HHhhhcCCcccccccCCCeEe---cCCCCHHHHHHHHhhcC
Q 028558 163 T-FNEVQK--LLSKTNGKMVGDLMTPAPVVV---RETTNLEDAARSSHSFF 207 (207)
Q Consensus 163 ~-~~~~~~--~~~~~~~~~v~~im~~~~~~v---~~~~~l~e~l~~m~~~g 207 (207)
. ...+.. ...-..+.+++++++..++.+ +...+.+.+.++|.++|
T Consensus 317 q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~ 367 (546)
T PRK14869 317 QAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENG 367 (546)
T ss_pred ccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcC
Confidence 0 000000 000124567788888776655 44666777888877654
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.46 E-value=9.5e-14 Score=112.81 Aligned_cols=112 Identities=15% Similarity=0.233 Sum_probs=95.5
Q ss_pred ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
|-++++++|+++.+||+....++|+++..|.+ +.++.+++ +-.|. +..+++ ..-..+|+++
T Consensus 179 s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd------------~dk~vGii-t~~dI--~~aia~----g~~~~kV~~~ 239 (294)
T COG2524 179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVD------------DDKIVGII-TLSDI--AKAIAN----GNLDAKVSDY 239 (294)
T ss_pred cCCceEecCCccHHHHHHHHHHcCccCCceec------------CCceEEEE-EHHHH--HHHHHc----CCccccHHHH
Confidence 55788999999999999999999999998885 33777887 66661 122222 2335689999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|.+ ++++++.++.+.||+++|..+++.++.|+|.+|+++|+||++|++..+
T Consensus 240 M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i 290 (294)
T COG2524 240 MRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290 (294)
T ss_pred hcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence 999 999999999999999999999999999999999999999999999864
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.42 E-value=5e-13 Score=108.63 Aligned_cols=95 Identities=28% Similarity=0.371 Sum_probs=85.3
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
...+|+++|++ +++++.+++|+.++..+|.+++++..||+|+ ++++|++|.+|+..+.+.
T Consensus 170 Pk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~----------------- 229 (294)
T COG2524 170 PKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIAN----------------- 229 (294)
T ss_pred CcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHc-----------------
Confidence 35689999999 9999999999999999999999999999995 599999999999986532
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....+++++|.+.++++.+++.+.+|+++|..+|
T Consensus 230 ------------g~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~n 264 (294)
T COG2524 230 ------------GNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNN 264 (294)
T ss_pred ------------CCccccHHHHhccCCceEcCchhHHHHHHHHHhcC
Confidence 12467899999999999999999999999998875
No 5
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.37 E-value=1.2e-12 Score=116.53 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=101.1
Q ss_pred cccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558 8 HSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87 (207)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~ 87 (207)
++.|.++|.|..+..+|++.|.++|++++++.+ +.....+++ |..|. ..++++.+. ..+.+|++
T Consensus 155 ~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~-----------~~~~~~GIv-T~~dl-~~~v~~~g~---~~~~~V~e 218 (610)
T COG2905 155 KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLD-----------DSGPLLGIV-TRKDL-RSRVIADGR---SKTQKVSE 218 (610)
T ss_pred hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEc-----------CCCCcccee-ehHHH-HHHHHhcCC---Ccccchhh
Confidence 567899999999999999999999999888887 666667787 88884 456666543 55678999
Q ss_pred cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+|+. +++++..++.+.||.-.|.+++++|+||++ +|+++|+||..||++..
T Consensus 219 vmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 219 VMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLF 269 (610)
T ss_pred hhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhh
Confidence 9999 999999999999999999999999999998 69999999999999864
No 6
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.33 E-value=2.3e-12 Score=106.81 Aligned_cols=111 Identities=27% Similarity=0.355 Sum_probs=94.0
Q ss_pred hhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCC
Q 028558 73 ANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152 (207)
Q Consensus 73 ~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~ 152 (207)
.+++.++..+++..++|++ +++++++++++.+|+..|.+|+++.+||+|++.+++|+|+.+|+.+.-.
T Consensus 235 lqa~~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~---------- 302 (382)
T COG3448 235 LQALRRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR---------- 302 (382)
T ss_pred HHHHHHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC----------
Confidence 3566777889999999999 9999999999999999999999999999999999999999999997421
Q ss_pred CCCcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
|+.+..++ -....++..+|++++.++.++++..+++..|.+.|
T Consensus 303 --------~~p~qrlr----~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g 345 (382)
T COG3448 303 --------PSPFQRLR----FLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEG 345 (382)
T ss_pred --------cchHHHhh----ccCCCcccccccCcceeecCCCcHHHHHHHhhcCC
Confidence 21111111 23567799999999999999999999999998765
No 7
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=1.1e-11 Score=89.48 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=87.0
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+++++++.+..+|.+.+.+.+.+.++|++ +..++.+++ +..|.... . .......+++++|..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~dl~~~---~---~~~~~~~~v~~~~~~ 64 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVD-----------EENKVLGQV-TLSDLLEI---G---PNDYETLKVCEVYIV 64 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCCEEEEE-EHHHHHhh---c---cccccccChhheeec
Confidence 35778888999999999888999998886 556677777 76663111 0 111122468899988
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus 65 --~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 65 --PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred --CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 8999999999999999999999999999998899999999999975
No 8
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=1.2e-11 Score=89.59 Aligned_cols=111 Identities=10% Similarity=0.241 Sum_probs=89.7
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
|.+++++.+..+|...+.+.+.++++|++ +..++.+++ +..|... .+.. ........+++++|.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd-----------~~g~~~G~v-t~~dl~~--~~~~-~~~~~~~~~v~~~~~~ 67 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCD-----------PHGKLAGVL-TKTDVVR--QMGR-CGGPGCTAPVENVMTR 67 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEEC-----------CCCCEEEEE-ehHHHHH--HHhh-cCCCcccCCHHHHhcC
Confidence 56788999999999999999999999996 556677787 7666211 1111 0112234568999998
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus 68 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 68 --AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred --CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 8999999999999999999999999999998899999999999874
No 9
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.24 E-value=4.6e-11 Score=102.46 Aligned_cols=100 Identities=26% Similarity=0.288 Sum_probs=83.2
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
..++|+++|++.++++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+......
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~--------------- 264 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI--------------- 264 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC---------------
Confidence 55679999986336899999999999999999999888888998899999999999986431100
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|+++++++.+++++.+++++|.+++
T Consensus 265 ------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 299 (326)
T PRK10892 265 ------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRH 299 (326)
T ss_pred ------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCC
Confidence 01245799999999999999999999999998764
No 10
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=2.9e-11 Score=85.90 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=78.6
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc-CCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS-SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~-~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++++.+..+|++.+.++++++++|++ + ..++.|++ |..|... . +
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd-----------~~~~~~~Giv-t~~Dl~~------~-------------~- 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWD-----------SRKQQFVGML-TITDFIL------I-------------L- 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEe-----------CCCCEEEEEE-EHHHHhh------h-------------e-
Confidence 57899999999999999999999999995 3 35677888 6666310 0 0
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~ 139 (207)
.+.++.+++++.++++.|.+++++++||+|++ |+++|+||.+|+++
T Consensus 51 ---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 51 ---RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred ---eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 06789999999999999999999999999987 89999999999975
No 11
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.21 E-value=3.5e-11 Score=76.72 Aligned_cols=55 Identities=45% Similarity=0.685 Sum_probs=51.9
Q ss_pred ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|+++|++ +++++++++++.++++.|.+++++++||+|++|+++|+||.+||++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999 999999999999999999999999999999999999999999999753
No 12
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.21 E-value=2.2e-11 Score=92.51 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=83.9
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
..+++..+|+. +++.+.+++++.++.++|..++++.+||+++ |+++|-||..++.++.-..
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~---------------- 123 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEG---------------- 123 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcc----------------
Confidence 56688999999 9999999999999999999999999999995 8999999999999864110
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
.+...+..+.++|..++++|++++++..+.+++..|
T Consensus 124 ----------~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~ 159 (187)
T COG3620 124 ----------MESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH 159 (187)
T ss_pred ----------ccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC
Confidence 012345678999999999999999999999998765
No 13
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=6.3e-11 Score=86.25 Aligned_cols=113 Identities=16% Similarity=0.228 Sum_probs=88.6
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
|+++++++.+..+|.+.+.+++.+++.|++ +..++.+++ +..|.... ... .......+++++|.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d-----------~~~~~~Giv-t~~dl~~~-~~~---~~~~~~~~~~~~~~ 65 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD-----------EDGDLVGVV-SRKDLLKA-SIG---GADLQKVPVGVIMT 65 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCCEEEEE-EHHHHHHH-HHc---CCCccCCCHHHHhC
Confidence 567889999999999999899999999986 455677777 66662111 111 11223456888997
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC---CcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~dl~~ 139 (207)
+..++.++++++++.++++.|.+++.+.+||+|++ |+++|+||.+|+.+
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 66 RMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 42268899999999999999999999999999976 69999999999875
No 14
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.19 E-value=4e-11 Score=99.47 Aligned_cols=118 Identities=22% Similarity=0.227 Sum_probs=99.2
Q ss_pred ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccch-hh-hhhhhhhccCCCCCccccc
Q 028558 9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAV-FA-SGTLTANSAAPSSGVYTVG 86 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d-~~-~~~~~~~~~~~~~~~~~v~ 86 (207)
|-.|+|++++.+...|-+++.+|++.++.|++ ++.++.+++ +-+| .. ..+--.+.+ +....-+++
T Consensus 252 SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d-----------~~~rl~GiV-t~~dl~~~a~~~p~qrl-r~~~~~~vk 318 (382)
T COG3448 252 SRDVVTVSTDTSIDHARKLLQEHRIKALPVLD-----------EHRRLVGIV-TQRDLLKHARPSPFQRL-RFLRPPTVK 318 (382)
T ss_pred CccceecCCcCChHHHHHHHHHcCcccccccc-----------cccceeeee-eHHHHhhccCcchHHHh-hccCCCccc
Confidence 45789999999999999999999999999998 778888888 7777 21 111111222 234556899
Q ss_pred ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+|++ ++.++.++++..+++-.+.+.+.+++||+|.+|+++||||..|++.++
T Consensus 319 ~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal 371 (382)
T COG3448 319 GIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAAL 371 (382)
T ss_pred ccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHH
Confidence 99999 899999999999999999999999999999999999999999999764
No 15
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=6.4e-11 Score=86.35 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=85.0
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCc------cc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGV------YT 84 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~------~~ 84 (207)
++++++++.+..+|.+.+.+++++.++|++ .+.++.+++ +..|... ...... ..... +.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~-----------~~~~~~Giv-~~~dl~~--~~~~~~-~~~~~~~~~~~~~ 66 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVD-----------ENGKVVDVY-SRFDVIN--LAKEGA-YNNLDLTVGEALE 66 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEEC-----------CCCeEEEEE-eHHHHHH--HHhcCc-cccccCCHHHHHh
Confidence 467889999999999999999999999996 456677777 7777211 111110 00001 12
Q ss_pred ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
....|.. ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 67 ~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 67 RRSQDFE--GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred hcccCCC--CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 2334555 6889999999999999999999999999998899999999999875
No 16
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=1.3e-10 Score=84.89 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=88.1
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc-------CCCCCc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA-------APSSGV 82 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~-------~~~~~~ 82 (207)
-++++++++.+..++...+.+.+..+++|++ +...+.+++ +..|... .+..... ......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~Giv-~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 68 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVD-----------GDRRLVGIV-TQRDLLR-HARPDGRRPLRGRLRGRDKP 68 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEEC-----------CCCCEEEEE-EHHHHHh-hhcccccchhhhhhhccccc
Confidence 3567889999999999999999999998886 345566666 5555210 0000000 001234
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+++
T Consensus 69 ~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 69 ETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 478999988 8999999999999999999999999999998899999999999975
No 17
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.16 E-value=1.6e-10 Score=98.91 Aligned_cols=96 Identities=19% Similarity=0.118 Sum_probs=82.4
Q ss_pred cccccccccccCC--ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 82 ~~~v~~vm~~~~~--~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
..+|+++|.+ + ++++++++++.++++.|.+++...+||+|++|+++|+|+.+|+.+.....
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~--------------- 258 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG--------------- 258 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC---------------
Confidence 4679999999 7 99999999999999999999999999999899999999999998643110
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|+++++++.+++++.++++.|.+++
T Consensus 259 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 293 (321)
T PRK11543 259 -------------GALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRK 293 (321)
T ss_pred -------------CCcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcC
Confidence 01235688999999999999999999999998764
No 18
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.16 E-value=1.3e-10 Score=99.65 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=92.4
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..+|++.+.+++.++++|++ +..++.|++ +..|.. +..... ......+++++|+
T Consensus 213 ~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd-----------~~g~lvGiv-t~~Dl~--~~~~~~--~~~~~~~v~~im~ 276 (326)
T PRK10892 213 EIPHVSKTASLRDALLEITRKNLGMTVICD-----------DNMKIEGIF-TDGDLR--RVFDMG--IDLRQASIADVMT 276 (326)
T ss_pred CCeEECCCCCHHHHHHHHHhcCCCeEEEEc-----------CCCcEEEEE-ecHHHH--HHHhcC--CCcccCCHHHhcC
Confidence 677899999999999999999999988886 566788888 888831 222221 1223457999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
+ ++.++.+++++.++++.|.+++++++||++ +|+++|+||.+|++++
T Consensus 277 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 277 P--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred C--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 9 999999999999999999999999999998 6899999999999974
No 19
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=2.4e-10 Score=82.22 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=86.1
Q ss_pred ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccccc
Q 028558 13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK 92 (207)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~ 92 (207)
++++++.+..++.+.+.+.+..++++++ +..+..+++ +..|.. +.+... .....++.++|.+
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~dl~--~~~~~~---~~~~~~v~~~~~~- 66 (113)
T cd04607 5 LLVSPDASILDALRKIDKNALRIVLVVD-----------ENGRLLGTV-TDGDIR--RALLKG---LSLDDPVSEVMNR- 66 (113)
T ss_pred eEECCCCCHHHHHHHHHhcCcCEEEEEC-----------CCCCEEEEE-EcHHHH--HHHhcC---CCcCCCHHHhhcC-
Confidence 4788899999999999888999999986 455666777 666621 111111 1113468899988
Q ss_pred CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.+.++++++++.++++.|.+++.+.+||++++|+++|+||.+|++.
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 67 -NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred -CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 8999999999999999999999999999998899999999999874
No 20
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=2.1e-10 Score=82.75 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=87.3
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.+.++.++.+..++.+.+.+++.++++|++ +. .++.++. +..|.. ..+... .......++.++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~~G~v-~~~dl~-~~~~~~--~~~~~~~~v~~~~ 66 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEK-----------RRESDAYGIV-TMRDIL-KKVVAE--GRDPDRVNVYEIM 66 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEE-----------CCCCcEEEEE-ehHHHH-HHHHhC--CCCCCccCHHHHh
Confidence 355788999999999999989999999886 44 5666777 666621 111111 1122345788999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.+ ++.++++++++.++++.|.+++...+||+|+ |+++|+|+..|+++
T Consensus 67 ~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 67 TK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred cC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 88 8999999999999999999999999999996 99999999999975
No 21
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.13 E-value=2e-10 Score=82.32 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=87.2
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++.++.+..++.+.+.+++.+.++|++ + .+..+++ +..|... .....+ ......++.++|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~-~~~~G~v-~~~dl~~-~~~~~~--~~~~~~~v~~i~~ 65 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD-----------G-NKLVGIF-TSKDIAL-RVVAQG--LDPESTLVERVMT 65 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE-----------C-CEEEEEE-EhHHHHH-HHHhcC--CCcCcCCHHHhcC
Confidence 566788999999999999889998998885 4 5566777 6666311 111111 1111257889998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++++++++.++++.|.+++.+++||++++|+++|+|+.+|++.
T Consensus 66 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 66 P--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred C--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 8 8999999999999999999999999999998899999999999874
No 22
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.13 E-value=1.6e-10 Score=103.84 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=92.6
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.++++++++.+..+|.+.|.++++++++|++ ++.++.+++ +..|... .. ...+++++|
T Consensus 97 ~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD-----------~~gklvGIV-T~rDL~~-------~~---~~~~V~diM 154 (479)
T PRK07807 97 DTPVTLSPDDTVGDALALLPKRAHGAVVVVD-----------EEGRPVGVV-TEADCAG-------VD---RFTQVRDVM 154 (479)
T ss_pred cCCeEECCCCCHHHHHHHHHhcCCceEEEEC-----------CCCeEEEEE-eHHHHhc-------Cc---cCCCHHHhc
Confidence 4567999999999999999999999999996 555677888 7666311 01 123699999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~ 142 (207)
++ +++++++++++.++++.|.+++++++||+|++|+++|+||.+||++...
T Consensus 155 t~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 155 ST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred cC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 99 9999999999999999999999999999998899999999999998653
No 23
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.13 E-value=2.9e-10 Score=100.58 Aligned_cols=103 Identities=18% Similarity=0.239 Sum_probs=84.8
Q ss_pred hhhhhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCC
Q 028558 70 TLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGR 148 (207)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~ 148 (207)
.++.+.+ .+++.+|+++|+|+.++.+++.++++.++++.+.+++++++||++++ ++++|+|+.+|++....
T Consensus 180 ~~i~~vl--~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~------ 251 (408)
T TIGR03520 180 KILQGIV--SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN------ 251 (408)
T ss_pred HHHHHHh--ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc------
Confidence 3444433 46778999999998889999999999999999999999999999854 68999999999986320
Q ss_pred CCCCCCCcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
....++.++|+ ++.++++++++.++++.|.++
T Consensus 252 -------------------------~~~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~ 283 (408)
T TIGR03520 252 -------------------------KKNFDWQSLLR-EPYFVPENKKLDDLLRDFQEK 283 (408)
T ss_pred -------------------------cCCCCHHHHcC-CCeEeCCCCcHHHHHHHHHhc
Confidence 01234677875 678999999999999999875
No 24
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=1.1e-10 Score=86.02 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=85.3
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhh---hhhhccCCCCCcccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGT---LTANSAAPSSGVYTVGD 87 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~---~~~~~~~~~~~~~~v~~ 87 (207)
+++++.++.+..+|.+.+.+++.+.++|++ ...++.|++ +..|..... .+..+ .......++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-----------~~~~~~Giv-~~~dl~~~~~~~~~~~~-~~~~~~~~v~~ 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVD-----------SDDNFIGVI-TAVDLLGEEPIKRIQEG-GISRSELTVAD 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEc-----------CCCcEEEEE-EHHHHhhChhhHHHHHc-CCCchheEHHH
Confidence 456888999999999999989999999996 455667777 666631111 11111 01123456899
Q ss_pred cccccCCceEE------CCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHh
Q 028558 88 FMTTKEELHVV------KPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (207)
Q Consensus 88 vm~~~~~~~~v------~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~ 139 (207)
+|.+ ++..+ .+++++.++++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus 69 im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 69 VMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 9987 54433 268899999999999999999999976 79999999999975
No 25
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=2e-10 Score=82.75 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=84.0
Q ss_pred cccccCCCCCCcccccccccC-CCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQ-LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+.+++++.+..+|.+.+.+++ .+.++|++ +..++.+++ +..|... .... .....++.++|.
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~dl~~--~~~~----~~~~~~v~~~~~ 64 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVD-----------NEGRYVGII-SLADLRA--IPTS----QWAQTTVIQVMT 64 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEc-----------CCCcEEEEE-EHHHHHH--HHHh----hccccchhhhhc
Confidence 457788999999998887665 88888886 455667777 6666211 1111 112346889998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+...+.++.+++++.++++.|.+++.+++||+|++|+++|+++.+|+++
T Consensus 65 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 65 PAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 6324678999999999999999999999999997789999999999874
No 26
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.12 E-value=2.3e-10 Score=81.83 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=84.7
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
+.+++++++.+..+|.+.|.+.+.+++++++ +. .+..++. +..|.. +...... ....+.++
T Consensus 1 ~~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~-----------~~~~~~~G~v-~~~~l~--~~~~~~~----~~~~~~~~ 62 (111)
T cd04590 1 TDIVALDADDTLEEILELIAESGHSRFPVYD-----------GDLDNIIGVV-HVKDLL--RALAEGE----EDLDLRDL 62 (111)
T ss_pred CceEEEcCCCCHHHHHHHHhhCCCceEEEEC-----------CCCceEEEEE-EHHHHH--HHHHcCC----CcCCHHHH
Confidence 3467889999999999999999999999986 44 5666777 666621 1111111 11345666
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
| . ++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+.+
T Consensus 63 ~-~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 L-R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred h-c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 5 4 5789999999999999999999999999998899999999999874
No 27
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.12 E-value=2.5e-10 Score=97.66 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=91.8
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..+|++.+.+++.++++|++ +++++.|++ +..|.. +.+... .....+++++|+
T Consensus 208 ~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd-----------~~g~~iG~v-t~~dl~--~~~~~~---~~~~~~v~~im~ 270 (321)
T PRK11543 208 AIPQVALTASVMDAMLELSRTGLGLVAVCD-----------AQQQVQGVF-TDGDLR--RWLVGG---GALTTPVNEAMT 270 (321)
T ss_pred CCcEeCCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEe-cHHHHH--HHHhCC---CCcCCcHHHhcC
Confidence 467899999999999999999999999996 566777888 776631 111111 112346899999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
+ ++.++.+++++.++++.|.+++..++||+|++|+++|+||.+|++++
T Consensus 271 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 271 R--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred C--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 9 89999999999999999999999999999988899999999999975
No 28
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.12 E-value=3.1e-10 Score=94.53 Aligned_cols=95 Identities=31% Similarity=0.303 Sum_probs=82.1
Q ss_pred ccccccccccCC-ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 83 ~~v~~vm~~~~~-~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
++|+++|.+ + +.++++++++.++++.|.+.+++.+||+|++|+++|+|+..|+.+.... +
T Consensus 155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-~---------------- 215 (268)
T TIGR00393 155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-G---------------- 215 (268)
T ss_pred hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-C----------------
Confidence 688999998 7 9999999999999999999999999999988999999999999874310 0
Q ss_pred hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++.+++++.+++++|.+++
T Consensus 216 -----------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 250 (268)
T TIGR00393 216 -----------GSLKSEVRDFMTLGPKTFKLDALLLEALEFLERRK 250 (268)
T ss_pred -----------CcccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcC
Confidence 01345688999999999999999999999998764
No 29
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=2.9e-10 Score=83.25 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=84.3
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCC----CC---Cc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAP----SS---GV 82 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~----~~---~~ 82 (207)
|+.+++++.+..+|.+.+.++++.+++|++ .. .++.+++ +..|... .+...... .. ..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-----------~~~~~~~Giv-~~~dl~~--~~~~~~~~~~~~~~~~~~~ 67 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTE-----------EESGEVIGIL-SQRRLVE--FLWENARSFPGLDPLYPIP 67 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEe-----------CCCCcEEEEE-EHHHHHH--HHHHhHHhccchhhhhhhh
Confidence 566788999999999999989999999986 43 5666777 6666211 11110000 00 01
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHH
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~ 138 (207)
..+.++|.+ ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+.
T Consensus 68 ~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 68 LRDLTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hhhcccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 123457877 899999999999999999999999999999889999999999986
No 30
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.11 E-value=3.6e-10 Score=95.73 Aligned_cols=99 Identities=23% Similarity=0.367 Sum_probs=81.9
Q ss_pred CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
.+...+|+++|+++.++.++++++++.++++.+.+++++++||++++ ++++|+|+.+|++.....
T Consensus 63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~-------------- 128 (292)
T PRK15094 63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-------------- 128 (292)
T ss_pred ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc--------------
Confidence 46778999999997779999999999999999999999999999865 789999999999863210
Q ss_pred cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
......+.++|. +++++++++++.++++.|.+++
T Consensus 129 ---------------~~~~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~ 162 (292)
T PRK15094 129 ---------------DAEAFSMDKVLR-QAVVVPESKRVDRMLKEFRSQR 162 (292)
T ss_pred ---------------cCCcCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcC
Confidence 001234678885 5568999999999999998753
No 31
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.10 E-value=4.1e-10 Score=81.29 Aligned_cols=110 Identities=16% Similarity=0.224 Sum_probs=86.4
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+.+++++.+..++.+.+.+.+...++|++ +..++.+++ +..|.. +.+.. .......+++++|.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~dl~--~~~~~--~~~~~~~~~~~~~~~ 66 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVD-----------RDGGVVGII-TLPDLL--RALEA--DEAGEPSAVDEVATP 66 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEc-----------CCCCEEEEE-EHHHHH--HHHhc--ccccccccHHHhccC
Confidence 45778899999999999999999999996 456667777 665621 11111 111122347889988
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC--CcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~--g~lvGiVt~~dl~~ 139 (207)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 67 --~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 67 --PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred --CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 89999999999999999999999999999976 79999999999975
No 32
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=9.2e-10 Score=79.37 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=72.4
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
++.++.+++++.++++.|.+++++.+||+|++ |+++|+++.+|+++.+...+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-------------------------- 55 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-------------------------- 55 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC--------------------------
Confidence 67899999999999999999999999999987 899999999999874311000
Q ss_pred hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 56 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 90 (114)
T cd04630 56 DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTN 90 (114)
T ss_pred CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcC
Confidence 01234688899888999999999999999998753
No 33
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.10 E-value=9.1e-10 Score=79.56 Aligned_cols=88 Identities=25% Similarity=0.196 Sum_probs=73.1
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
.+.++++++++.++++.|.+++...+||+|++|+++|+|+.+|+.+...... ..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~--------------------------~~ 55 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG--------------------------GP 55 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC--------------------------CC
Confidence 3678899999999999999999999999998999999999999987431000 01
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.++++.|.+++
T Consensus 56 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 89 (114)
T cd04619 56 GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRG 89 (114)
T ss_pred cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcC
Confidence 1345688999889999999999999999998764
No 34
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=9.3e-10 Score=79.24 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=71.7
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+.+... . .
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~--~---------------------------~ 52 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP--N---------------------------D 52 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc--c---------------------------c
Confidence 4678899999999999999999999999998899999999999986310 0 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|..++.++.+++++.+++++|.+++
T Consensus 53 ~~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~ 86 (111)
T cd04603 53 YETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETE 86 (111)
T ss_pred ccccChhheeecCCcEECCCCcHHHHHHHHHHcC
Confidence 1234688899888899999999999999998874
No 35
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.09 E-value=8.5e-11 Score=86.81 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=87.4
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..++.+.+.++++.++.|++ +..++.|++ +..|... ...... .....+++++|+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Gii-~~~dl~~-~~~~~~---~~~~~~v~~im~ 66 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVD-----------ESGKILGMV-TLGNLLS-SLSSGK---VQPSDPVSKALY 66 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCCEEEEE-EHHHHHH-HHHHhc---cCCCCcHHHHhh
Confidence 466889999999999999999999999996 455667777 6666211 111111 123458999999
Q ss_pred ccCCceEECCCCCHHHHHHHHH---------HcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 91 TKEELHVVKPTTTVDEALEILV---------EKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~---------~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
+ ++.++.+++++.++.+++. +.+.+++||++++|+++|+||.+|++++
T Consensus 67 ~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 67 K--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred c--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 9 9999999999999999653 3367889999988999999999999863
No 36
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09 E-value=1.2e-09 Score=78.04 Aligned_cols=83 Identities=25% Similarity=0.450 Sum_probs=71.0
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++...+||+|++|+++|+++.+++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------------------------------- 51 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA------------------------------- 51 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh-------------------------------
Confidence 6788999999999999999999999999998899999999999986421
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.+++.++.+++++++++++|.+++
T Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 85 (110)
T cd04605 52 RDKKSVEDIMTRNVITATPDEPIDVAARKMERHN 85 (110)
T ss_pred hCccCHHHhcCCCCeEECCCCcHHHHHHHHHHhC
Confidence 0112477888888999999999999999998753
No 37
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.09 E-value=4.5e-10 Score=79.69 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=84.3
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..+|...+.+.+.+.++|++ ...+..+++ +..|... ... .+++++|.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d-----------~~g~~~Giv-~~~dl~~------~~~-----~~~~~~~~ 58 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVD-----------ADGQPLGFV-TRREAAR------ASG-----GCCGDHAE 58 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEEC-----------CCCCEEEEE-eHHHHHH------hcc-----cchhhhcc
Confidence 456788899999999999889999998886 445566777 6655211 001 14778998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ .+..+.+++++.++++.|.+++...+||+|++|+++|+|+.+++.+
T Consensus 59 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 59 P--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred c--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 8 7888999999999999999999999999998899999999999874
No 38
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.08 E-value=4.1e-10 Score=80.43 Aligned_cols=105 Identities=21% Similarity=0.267 Sum_probs=85.1
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++.++.++.+..+|...+.+.+...++|++ ...++.+++ +..+.. .. ....+++++|.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~------~~----~~~~~v~~~~~ 60 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD-----------EKNKVVGIV-TSKDVA------GK----DPDTTIEKVMT 60 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEEC-----------CCCeEEEEe-cHHHHh------cc----cccccHHHHhc
Confidence 356778889999999999888888888886 445566666 554521 00 11346889998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++++++++.++++.|.+++.+.+||++++|+++|+++..|+.+
T Consensus 61 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 61 K--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred C--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 8 8999999999999999999999999999998899999999999875
No 39
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.08 E-value=5e-10 Score=80.34 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=86.4
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
...+.++.+..++.+.+.+.+.++++|++ +..+..+++ +..|... .... .......++.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd-----------~~~~~~G~v-~~~dl~~-~~~~---~~~~~~~~i~~~~~~ 66 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVD-----------DKKRLVGII-TRYDVLS-YALE---SEELKDAKVREVMNS 66 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEc-----------CCCCEEEEE-EHHHHHH-hhhh---hhhhcCCcHHHhccC
Confidence 44678888889999999999999998886 445666777 6666211 0111 111233568899988
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++++++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 67 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 67 --PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred --CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 8999999999999999999999999999998899999999999874
No 40
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.08 E-value=9.7e-10 Score=78.48 Aligned_cols=81 Identities=26% Similarity=0.327 Sum_probs=71.2
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+..++....
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------- 50 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------------------------------- 50 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc--------------------------------
Confidence 688999999999999999999999999999889999999999997521
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...++.++|.+++.++++++++.+++++|.+++
T Consensus 51 -~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 83 (108)
T cd04596 51 -PDTTIEKVMTKNPITVNPKTSVASVAHMMIWEG 83 (108)
T ss_pred -ccccHHHHhcCCCeEECCCCCHHHHHHHHHHcC
Confidence 234688888888999999999999999998653
No 41
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.07 E-value=5.2e-10 Score=78.89 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=77.8
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++.++.+..+|.+.|.+++++.++|++ ...+..|++ +..|. ...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d-----------~~~~~~Giv-~~~dl------~~~--------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLD-----------DDGKLSGII-TERDL------IAK--------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEEC-----------CCCCEEEEE-EHHHH------hcC---------------
Confidence 466789999999999999999999999996 455666777 55552 000
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
. .+.++.+++++.++++.|.+++.+++||++++|+++|+||.+|+++
T Consensus 49 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 49 S--EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred C--CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1 2688999999999999999999999999998799999999999975
No 42
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.07 E-value=4.6e-10 Score=79.80 Aligned_cols=105 Identities=17% Similarity=0.290 Sum_probs=84.3
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+.+++++.++.++...+.+.+..++.|++ +..+..+++ +..|... ... ...++.++|.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~dl~~--~~~-------~~~~v~~~~~~ 62 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVVD-----------KDNKLLGIV-SLESLEQ--AYK-------EAKSLEDIMLE 62 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEEc-----------CCCcEEEEE-EHHHHHH--Hhh-------cCCcHhHhhcC
Confidence 44678888999999999888999999886 445566777 5555211 100 11357889988
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.+.++++++++.++++.|.+++.+++||++++|+++|++|.+|+++
T Consensus 63 --~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 63 --DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred --CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 8999999999999999999999999999998899999999999874
No 43
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=1.9e-09 Score=77.02 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=72.5
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.++.++.++++.|.+++++.+||+|++++++|+++.+|+++....... .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~--------------------------~ 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA--------------------------S 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC--------------------------C
Confidence 67889999999999999999999999999988999999999999875311000 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.+++.++.+++++.+++++|.+.+
T Consensus 56 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 89 (113)
T cd04623 56 ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERR 89 (113)
T ss_pred ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcC
Confidence 1134688899888999999999999999998653
No 44
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.07 E-value=9.7e-10 Score=81.13 Aligned_cols=85 Identities=28% Similarity=0.302 Sum_probs=72.2
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++++++||+|++|+++|+++.+|+++...... .
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~---------------------------~ 55 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK---------------------------V 55 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc---------------------------c
Confidence 6789999999999999999999999999998899999999999986431100 1
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhh
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHS 205 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~ 205 (207)
....++.++|.+++.++.+++++.+++++|..
T Consensus 56 ~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~ 87 (124)
T cd04608 56 QPSDPVSKALYKQFKRVNKNDTLGKLSRILET 87 (124)
T ss_pred CCCCcHHHHhhccceecCCCCCHHHHHhhccc
Confidence 24568999999999999999999999997643
No 45
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=1.3e-09 Score=78.40 Aligned_cols=92 Identities=23% Similarity=0.212 Sum_probs=73.1
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
+++++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+.+....... ..+ ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~------------~~~----------~~ 59 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLEN------------LDL----------ER 59 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCc------------hhH----------HH
Confidence 67899999999999999999999999999988999999999999875311000 000 00
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.+.++++.+++++.+++++|.+++
T Consensus 60 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~ 93 (116)
T cd04643 60 LVDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP 93 (116)
T ss_pred HhCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC
Confidence 0145688899888999999999999999997653
No 46
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.06 E-value=4e-10 Score=81.40 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=83.7
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc---CCceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS---SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~---~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~ 87 (207)
++++++++.+..++.+.+.+++.++++|++ . ..++.+++ +..|.... . .....+++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~~~~G~v-~~~dl~~~----~-----~~~~~v~~ 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTE-----------DGKSGGKLLGIV-TSRDIDFL----T-----DSETPLSE 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEee-----------CCCcCCEEEEEE-EhHHhhhh----h-----ccCCCHHH
Confidence 445778888999999999888999999885 3 45667777 65552110 0 01235889
Q ss_pred cccccCCceEECC--CCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 88 FMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 88 vm~~~~~~~~v~~--~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+|.+ ...++.. ++++.++++.|.+++.+.+||++++|+++|+||.+|+.+
T Consensus 62 ~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 62 VMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred hcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 9988 7777755 999999999999999999999998899999999999874
No 47
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.06 E-value=5.4e-10 Score=102.87 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=83.8
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
.+.++++|+|++ ++.++++++++.++.+.|.+++.+.+||+|++|+++|+|+.+|+.+......
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-------------- 507 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-------------- 507 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc--------------
Confidence 456789999999 8999999999999999999999999999998899999999999987421000
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...+.++.++|+++++++++++++.+++++|.+++
T Consensus 508 -------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~ 542 (574)
T PRK01862 508 -------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQ 542 (574)
T ss_pred -------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcC
Confidence 01235688999999999999999999999998764
No 48
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.06 E-value=7.3e-10 Score=79.13 Aligned_cols=108 Identities=16% Similarity=0.236 Sum_probs=84.9
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++.++.+..++.+.+.+.++++++|++ + .+..+++ +..|... ..... ....++.++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~-~~~~G~v-~~~~l~~--~~~~~----~~~~~v~~~~~ 62 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVD-----------D-GKLVGIV-TLSDIAH--AIARG----LELAKVKDVMT 62 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEee-----------C-CEEEEEE-EHHHHHH--HHhcc----ccccCHHHHhc
Confidence 345778888999999999999999999886 4 4556666 5555211 11111 11246888998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++++++++.++++.|.+.+.+.+||++++|+++|+|+.+|+++
T Consensus 63 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 63 K--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred C--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 8 8999999999999999999999999999998799999999999874
No 49
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.06 E-value=6.1e-10 Score=79.62 Aligned_cols=107 Identities=27% Similarity=0.381 Sum_probs=85.6
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
|+++++++.+..++.+.+.+.+.++++|++ + ....+++ +..|.. +.... .....++.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~v-~~~dl~--~~~~~----~~~~~~~~~~~~ 63 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVE-----------G-GRVVGII-SRRDVE--KALRH----GLGHAPVKDYMS 63 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEee-----------C-CEEEEEE-EHHHHH--HHHhc----ccccCcHHHHhc
Confidence 566788888999999999888999999986 3 5556666 555521 11111 113457889999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+++
T Consensus 64 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 64 T--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred C--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 8 899999999999999999999999999999 789999999999874
No 50
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.06 E-value=3.4e-10 Score=101.28 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=86.1
Q ss_pred cccccccCCCCCCcccccccc-----cCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFA-----LQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT 84 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-----~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~ 84 (207)
..+++++++.+..+|.+.+.+ +++..+.|++ +..++.|++ +-.|. ..+ ....+
T Consensus 139 ~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd-----------~~~~l~GvV-~l~dL------l~a----~~~~~ 196 (449)
T TIGR00400 139 IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTN-----------ESKHLKGVL-SIRDL------ILA----KPEEI 196 (449)
T ss_pred CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEEC-----------CCCeEEEEE-EHHHH------hcC----CCCCc
Confidence 456788999999998888754 4566677775 556677777 55552 111 12346
Q ss_pred ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++++|++ ++.++++++++.++++.|.+++...+||+|++|+++|+||.+|+++..
T Consensus 197 v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l 251 (449)
T TIGR00400 197 LSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVI 251 (449)
T ss_pred HHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHH
Confidence 9999999 899999999999999999999999999999889999999999999754
No 51
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.06 E-value=2e-09 Score=78.26 Aligned_cols=87 Identities=26% Similarity=0.262 Sum_probs=71.9
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|..++.+.+||+|++|+++|+|+..|+.+...... .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~---------------------------~ 54 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA---------------------------D 54 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC---------------------------C
Confidence 5789999999999999999999999999998899999999999987531000 0
Q ss_pred hcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.+ +++++++++++.+++++|.+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 90 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQ 90 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcC
Confidence 124567788874 6889999999999999998864
No 52
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.05 E-value=1.6e-09 Score=76.88 Aligned_cols=70 Identities=26% Similarity=0.280 Sum_probs=62.4
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
++.++++++++.++.+.|.+++++.+||+|++ |+++|+||.+|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence 57899999999999999999999999999974 8999999999998631
Q ss_pred hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
. ++++.+++++.+++++|.+++
T Consensus 51 --~-----------~~~v~~~~~l~~a~~~m~~~~ 72 (98)
T cd04618 51 --R-----------LVSIHPERSLFDAALLLLKNK 72 (98)
T ss_pred --e-----------eEEeCCCCcHHHHHHHHHHCC
Confidence 1 778999999999999998864
No 53
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.05 E-value=1.6e-09 Score=77.50 Aligned_cols=87 Identities=30% Similarity=0.397 Sum_probs=72.7
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|+.+...... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~ 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS---------------------------L 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence 6788999999999999999999999999998899999999999986431000 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.+++.++++++++.++++.|.+++
T Consensus 55 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 88 (114)
T cd04613 55 YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSD 88 (114)
T ss_pred cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCC
Confidence 1225688999999999999999999999997653
No 54
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.05 E-value=6.9e-10 Score=81.61 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=82.4
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCC-CC----------
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAP-SS---------- 80 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~-~~---------- 80 (207)
+++++++.+..+|.+.|.++++.+++|++ +.....+++ +..|... ........ ..
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d-----------~~~~~~Giv-~~~dl~~--~~~~~~~~~~~~~~~~~~~~~ 68 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVD-----------EKGKLIGNI-SASDLKG--LLLSPDDLLLYRTITFKELSE 68 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEEC-----------CCCcEEEEE-EHHHhhh--hhcCcchhhcccchhhhhhhh
Confidence 45788999999999999999999999886 445566666 6555211 11000000 00
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
......+.|.. ++.++++++++.++++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 69 KFTDSDGVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred hcccccccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 00123356777 8999999999999999999999999999998899999999999874
No 55
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.05 E-value=9.1e-10 Score=98.95 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=80.7
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
.++++++|.+ ++.++++++++.++++.|.+++++.+||+|++++++|+||.+|+....
T Consensus 88 ~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~-------------------- 145 (479)
T PRK07807 88 WVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD-------------------- 145 (479)
T ss_pred hccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc--------------------
Confidence 3467899999 999999999999999999999999999999889999999999996420
Q ss_pred hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...++.++|+++++++++++++.+++++|.+++
T Consensus 146 -------------~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~ 178 (479)
T PRK07807 146 -------------RFTQVRDVMSTDLVTLPAGTDPREAFDLLEAAR 178 (479)
T ss_pred -------------cCCCHHHhccCCceEECCCCcHHHHHHHHHhcC
Confidence 224688999999999999999999999998764
No 56
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.05 E-value=1.1e-09 Score=78.22 Aligned_cols=107 Identities=17% Similarity=0.300 Sum_probs=86.1
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++.++.+..++.+.+.+++.++++|++ +..+..+++ +..+.. +.+... ...+.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~--~~~~~~------~~~~~~~~~ 62 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVD-----------EDGRLVGIV-TSWDIS--KAVARD------KKSVEDIMT 62 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEEC-----------CCCcEEEEE-eHHHHH--HHHhhC------ccCHHHhcC
Confidence 556788999999999999999999999986 455666777 655521 111111 124888998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++++++++.++++.|.+++.+.+||++++|+++|+|+..|+.+
T Consensus 63 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 63 R--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred C--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 8 8999999999999999999999999999998899999999999864
No 57
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.04 E-value=6e-10 Score=100.65 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=91.6
Q ss_pred ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccccc
Q 028558 13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK 92 (207)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~ 92 (207)
.+++|+.+..+|.+.+.+++.++++|++.+ ..+.++.+++ |..|.... ......+|+++|++.
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~--------~~~gkLvGIV-T~~DLr~~--------~~~~~~~V~dIMt~~ 170 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDG--------TAHGKLLGIV-TSRDYRIS--------RMSLDTKVKDFMTPF 170 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCC--------CcCCEEEEEE-EcHHhhcc--------ccCCCCCHHHHhCCC
Confidence 488999999999999999999999999610 0146788888 87773110 112345799999964
Q ss_pred CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus 171 ~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 171 EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 3788999999999999999999999999999889999999999999854
No 58
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.04 E-value=2.5e-09 Score=80.32 Aligned_cols=98 Identities=23% Similarity=0.211 Sum_probs=70.4
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|++++......... .. ....| .
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~---~~--~~~~~-----------~ 65 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRV---QP--EDETK-----------Q 65 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhcccccc---cc--chhhc-----------c
Confidence 68899999999999999999999999999988999999999999986422111000 00 00000 0
Q ss_pred hcCCccccc---------ccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDL---------MTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~i---------m~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...+.+.++ |.++++++.+++++.+++++|.+++
T Consensus 66 ~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~ 108 (133)
T cd04592 66 TNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKG 108 (133)
T ss_pred cccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcC
Confidence 011223334 3567899999999999999998874
No 59
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.04 E-value=2.5e-09 Score=77.13 Aligned_cols=87 Identities=26% Similarity=0.243 Sum_probs=72.2
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------~ 54 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------A 54 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc---------------------------c
Confidence 5778899999999999999999999999998899999999999987431100 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.+.++++.+++++.+++++|.+++
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~ 88 (115)
T cd04593 55 GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRG 88 (115)
T ss_pred cccccHHHhccCCceEECCCCCHHHHHHHHHHcC
Confidence 1233477888888999999999999999998764
No 60
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=2e-09 Score=77.02 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=72.2
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|+.+.... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~----------------------------~~ 53 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLF----------------------------ES 53 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhh----------------------------cc
Confidence 57889999999999999999999999999988999999999999864210 00
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.++++.|.+++
T Consensus 54 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 87 (111)
T cd04626 54 FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQ 87 (111)
T ss_pred cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcC
Confidence 1234678889889999999999999999998764
No 61
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=7.1e-10 Score=79.82 Aligned_cols=110 Identities=17% Similarity=0.185 Sum_probs=84.3
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCC---Cccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSS---GVYTVGDF 88 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~---~~~~v~~v 88 (207)
+++++++.+..++.+.+.+++++.++|++ +..+..+++ +..|.. +.+........ ...+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~Giv-~~~dl~--~~~~~~~~~~~~~~~~~~v~~~ 68 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLD-----------KEGKYVGTI-SLTDIL--WKLKGLENLDLERLVDLKVIDV 68 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeEC-----------CCCcEEEEE-eHHHHH--HHhhccCchhHHHHhCCcHHHH
Confidence 56788999999999999999999999986 455666777 666621 11111100001 13568899
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
|.+ .+.++.+++++.++++.|.+++ .+||+|++|+++|++|.+|+++
T Consensus 69 ~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 69 MNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred hcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 999 8999999999999999998765 5999998899999999999875
No 62
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.04 E-value=9.7e-10 Score=79.18 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=83.3
Q ss_pred cccccCCCCCCcccccccccC-CCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQ-LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+.+++++.+..++.+.+.+++ ...++|++ ..++.+++ +..|.. +.+... ......++.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------~~~~~G~v-~~~dl~--~~~~~~--~~~~~~~i~~~~~ 65 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE------------KGRLLGIF-TERDIV--RLTAIG--KDLSDLPIGEVMT 65 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcC------------CCcEEEEE-eHHHHH--HHHhcC--CCccccCHHHhcC
Confidence 456788889999999998888 67777774 34566777 666631 111111 1112346889998
Q ss_pred ccCCceEECCC--CCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~--~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++.++ +++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 66 ~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 66 Q--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred C--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 8 88889887 78999999999999999999998899999999999975
No 63
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=1.9e-09 Score=77.07 Aligned_cols=85 Identities=25% Similarity=0.309 Sum_probs=72.0
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+.+...+||++++|+++|+|+..++.+.... .
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-----------------------------~ 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-----------------------------G 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-----------------------------c
Confidence 57889999999999999998889999999988999999999999874310 1
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|..+++++++++++.++++.|.+++
T Consensus 53 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (111)
T cd04639 53 GPDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGG 86 (111)
T ss_pred CCCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcC
Confidence 1234688888888999999999999999998754
No 64
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.04 E-value=2.7e-09 Score=75.66 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=69.4
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.+++++.++.++++.|.+++.+.+||+|++|+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 578899999999999999999999999999889999999999998631
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
..++.++|.+.+.++.+++++.+++++|.+++
T Consensus 50 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
T cd04582 50 --GGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHD 81 (106)
T ss_pred --ccchhhhcccCCEEECCCCCHHHHHHHHHHCC
Confidence 12467888877888999999999999998764
No 65
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=5.3e-10 Score=80.25 Aligned_cols=111 Identities=23% Similarity=0.293 Sum_probs=85.2
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+.+++++.+..++.+.+.+.+...++|++ +..+..+++ +..+... .+..... ......++.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~G~v-~~~~l~~-~~~~~~~-~~~~~~~v~~~~~~ 68 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVVD-----------DNGNLVGFL-SEQDCLK-QLLESSY-HCDGVATVRDIMTT 68 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEEC-----------CCCeEEEEe-ehHHHHH-Hhhhhhh-ccCCCccHHHHhcc
Confidence 45778899999999999888888888886 455666777 6655211 1111110 01123468899998
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+.+
T Consensus 69 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 69 --EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred --CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 8999999999999999999999999999996 89999999999975
No 66
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=1.2e-09 Score=78.14 Aligned_cols=110 Identities=25% Similarity=0.339 Sum_probs=85.9
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
++++.++.+..++...+.+++...++|++ +..+..++. +..|... .+... .......++.++|.+
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~Giv-~~~~l~~--~~~~~-~~~~~~~~~~~~~~~ 67 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVD-----------DGGRLVGIF-SERDIVR--KVALR-GASALDTPVSEIMTR 67 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEC-----------CCCCEEEEE-ehHHHHH--HHhhc-CCCccccCHHHhcCC
Confidence 45678888999999999889999999986 445666777 6666211 11111 111224578999988
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++++++++.++++.|.+++.+++||+++ |+++|+||.+|+++
T Consensus 68 --~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 68 --NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred --CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 8999999999999999999999999999996 89999999999975
No 67
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.04 E-value=2.7e-09 Score=77.77 Aligned_cols=97 Identities=30% Similarity=0.442 Sum_probs=74.0
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++.+.|.+++++.+||++++|+++|+|+.+|+.+....... ...+ ..... .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~-----------~~~~----~~~~~--~ 65 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGR-----------RPLR----GRLRG--R 65 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhccccc-----------chhh----hhhhc--c
Confidence 78899999999999999999999999999988999999999999865321100 0000 00000 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.+.++++.+++++.+++++|.+++
T Consensus 66 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 99 (124)
T cd04600 66 DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGG 99 (124)
T ss_pred cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcC
Confidence 1344688999889999999999999999998753
No 68
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.03 E-value=1.5e-09 Score=77.83 Aligned_cols=110 Identities=21% Similarity=0.260 Sum_probs=85.3
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+.+++++.+..++.+.+.+.+...++|++ +.++..+++ +..+. .+.+.... .....++.++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~~i--~~~~~~~~--~~~~~~v~~~~~~ 67 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVD-----------EDGRLVGIF-TDGDL--RRALEKGL--DILTLPVADVMTR 67 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEEc-----------CCCCEEEEe-chHHH--HHHHhccC--ccccCCHHHhhcc
Confidence 34678888888999888888888888886 445666676 55552 12222211 1223469999999
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++++++++.++++.|.+++...+||++++|+++|+|+..||++
T Consensus 68 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 68 --NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred --CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 8999999999999999999999999999998899999999999975
No 69
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.03 E-value=5.5e-10 Score=83.13 Aligned_cols=115 Identities=24% Similarity=0.281 Sum_probs=86.4
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhh------------hccC
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTA------------NSAA 77 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~------------~~~~ 77 (207)
-++.++.++.+..++.+.+.+.+..+++|++ +...+.+++ +..|........ ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd-----------~~~~~~Gvi-~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 69 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVD-----------DDGRLVGIV-SEGDLLRRAELGTERRRARWLDLLAGAE 69 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEEC-----------CCCCEEEEe-eHHHHHHHhcccCcchhhhHHHHhcchH
Confidence 4567889999999999999999999998886 344555565 555511100000 0000
Q ss_pred ------CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 78 ------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 78 ------~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
......++.++|.+ ++.++.+++++.++++.|.+++.+.+||+| +|+++|+||.+|+.+
T Consensus 70 ~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 70 ELAAAFVRSHGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHHHHHhcCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 01233578999988 899999999999999999999999999999 899999999999875
No 70
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=3.4e-09 Score=75.87 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=71.6
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++++.+||+|++|+++|+|+..|+++..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------~ 53 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------I 53 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc----------------------------C
Confidence 578899999999999999999999999999889999999999998753110 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
....++.++|.++++++.+++++.+++++|.++
T Consensus 54 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 86 (112)
T cd04624 54 DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKN 86 (112)
T ss_pred CCccCHHHhccCCCEEECCCCcHHHHHHHHHHc
Confidence 123467788888899999999999999999764
No 71
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=1e-09 Score=79.84 Aligned_cols=112 Identities=24% Similarity=0.330 Sum_probs=86.4
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCC-------CCCccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAP-------SSGVYT 84 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~-------~~~~~~ 84 (207)
+++++++.+..++...+.+.++..++|.+ +..++.+++ +..+... ........ .....+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 68 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVN-----------EDGKLVGLL-TQRDLLR--AALSSLSDNGEESLTKERDVP 68 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEEC-----------CCCCEEEEE-EHHHHHH--HhccccccccccccccccCcC
Confidence 45788999999999999999999888886 345556666 6555211 11110000 123457
Q ss_pred ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+.++|.. ++.++++++++.++++.|.+++.+.+||++++|+++|++|..|+++
T Consensus 69 v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 69 VAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred HHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 8899988 8999999999999999999999999999998789999999999874
No 72
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=7.8e-10 Score=80.43 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=85.8
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCC-----CCCccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAP-----SSGVYTVG 86 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~-----~~~~~~v~ 86 (207)
++++.+..+..++.+.+.+.+..+++|++ ...++.++. +..|............. .....++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQ-----------KAGELIGII-TRRDIIRAGSVRTSVEDQQRTQTKASPTVE 70 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEEC-----------CCCcEEEEE-EcHHHHhhccccccccchhhhhhhccCcHH
Confidence 45788888999999999888999998886 445666666 55552111000000000 01345688
Q ss_pred ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++|.+ ++..+++++++.++++.|.+++.+.+||++++|+++|++|.+|+++
T Consensus 71 ~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 71 KIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred HHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 89988 8999999999999999999999999999998899999999999875
No 73
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.03 E-value=6.5e-10 Score=99.78 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=89.5
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+.++++++.+..++++.|.++++++++|++ +.++.+++ +..|... .. ...+++++|+
T Consensus 97 ~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD------------~gklvGIV-T~rDL~~-------~~---~~~~V~dIMt 153 (475)
T TIGR01303 97 TPITLAPHDTVSDAMALIHKRAHGAAVVIL------------EDRPVGLV-TDSDLLG-------VD---RFTQVRDIMS 153 (475)
T ss_pred CCeEECCCCCHHHHHHHHHhcCCeEEEEEE------------CCEEEEEE-EHHHhhc-------CC---CCCCHHHHcc
Confidence 556899999999999999999999999885 23566777 7666310 01 1246999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ +++++++++++.+++++|.+++++++||+|++|+++|+||.+||++..
T Consensus 154 ~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 154 T--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRAT 202 (475)
T ss_pred C--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 9 999999999999999999999999999999889999999999999865
No 74
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.02 E-value=2.4e-09 Score=76.83 Aligned_cols=89 Identities=29% Similarity=0.331 Sum_probs=72.8
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..++++...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~-------------------------~~~ 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESS-------------------------YHC 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhh-------------------------hcc
Confidence 6788999999999999999889999999998899999999999987431100 001
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.++++.|.+++
T Consensus 57 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 90 (114)
T cd04629 57 DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAK 90 (114)
T ss_pred CCCccHHHHhccCceEECCCCcHHHHHHHHHHhC
Confidence 1245688899888999999999999999998763
No 75
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.02 E-value=1.1e-09 Score=78.45 Aligned_cols=109 Identities=22% Similarity=0.316 Sum_probs=85.1
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++.+++++.+..++...+.+.+.++++|++ +..+..++. +..|... ..... .....++.++|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~dl~~--~~~~~---~~~~~~v~~~~~ 64 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKD-----------NEEKLKGVV-TFTDILD--LDLFE---SFLEKKVFNIVS 64 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEc-----------CCCCEEEEE-ehHHhHH--HHhhc---ccccCcHHHHhc
Confidence 456788999999999999999999999886 445556666 5555211 11110 111346888998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++.+++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus 65 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 65 Q--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred C--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 8 8999999999999999999999999999996 89999999999874
No 76
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.02 E-value=3.1e-09 Score=76.52 Aligned_cols=85 Identities=25% Similarity=0.255 Sum_probs=69.2
Q ss_pred CceEECCCCCHHHHHHHHHHcC-CCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~-~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
++.++++++++.++++.|.+++ .+.+||+|++|+++|+|+.+|+++... .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-----------------------------~ 52 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-----------------------------S 52 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-----------------------------h
Confidence 6788999999999999997765 889999998899999999999987421 0
Q ss_pred hhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558 173 KTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 173 ~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.+ +++++.+++++.++++.|.+++
T Consensus 53 ~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~ 89 (114)
T cd04801 53 QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQG 89 (114)
T ss_pred hccccchhhhhcccccceEECCCCcHHHHHHHHHHCC
Confidence 1123467788864 3678999999999999998864
No 77
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.02 E-value=1.5e-09 Score=77.47 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=84.9
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++.+++++.+..++.+.+.+.+...++|.+ + .++.++. +..|.. +...... ....+++++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-----------~-~~~~G~v-~~~~l~--~~~~~~~---~~~~~v~~~~~ 63 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD-----------D-GRPLGIV-TERDIL--RLLASGP---DLQTPVGEVMS 63 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEee-----------C-CEEEEEE-eHHHHH--HHHhcCC---CCCcCHHHhcC
Confidence 455778888999999999888888888885 3 4566666 555521 1111111 13457899998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+++
T Consensus 64 ~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 64 S--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred C--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 8 8999999999999999999999999999998899999999999875
No 78
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.01 E-value=1.1e-09 Score=78.39 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=83.9
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
.++++++.+..++.+.+.+.+...++|++ +..+..+++ +..+.. +.+... .....+.++|..
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~-----------~~~~~~G~v-~~~~l~--~~~~~~----~~~~~v~~~~~~ 64 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVVD-----------GDGHLVGLL-TRDDLI--RALAEG----GPDAPVRGVMRR 64 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEEC-----------CCCcEEEEe-eHHHHH--HHHHhc----CCCCcHHHHhcC
Confidence 34678888899999888888888888885 334566666 555521 111111 122368899988
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++++++++.++++.|.+++...+||++++|+++|++|.+|+.+
T Consensus 65 --~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 65 --DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred --CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 8999999999999999999999999999997799999999999874
No 79
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.01 E-value=4.3e-09 Score=74.77 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=70.6
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++..++++.++.++++.|.++++..+||+|++|+++|+++..|+++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-------------------------------- 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY-------------------------------- 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh--------------------------------
Confidence 678899999999999999999999999999889999999999998632
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
....++.++|.+.++++++++++.+++++|.++
T Consensus 51 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 83 (109)
T cd04583 51 KEAKSLEDIMLEDVFTVQPDASLRDVLGLVLKR 83 (109)
T ss_pred hcCCcHhHhhcCCceEECCCCcHHHHHHHHHHc
Confidence 122467788888899999999999999999774
No 80
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.01 E-value=4.4e-09 Score=75.56 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=71.7
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
...++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+++..... .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------~ 54 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------L 54 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC----------------------------C
Confidence 457889999999999999999999999999889999999999998643110 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.+.+.++.+++++.+++++|.+++
T Consensus 55 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 88 (113)
T cd04607 55 SLDDPVSEVMNRNPITAKVGSSREEILALMRERS 88 (113)
T ss_pred CcCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCC
Confidence 1234688899888899999999999999998763
No 81
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.01 E-value=1.4e-09 Score=77.19 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=83.1
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
.+++++++.+..++...+.+.+...+++++ + .+..++. +..|... . .....++++|.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~-~~~~g~v-~~~~l~~-----~-----~~~~~~~~~~~ 59 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD-----------N-GKVVGIV-SARDLLG-----K-----DPDETVEEIMS 59 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeE-----------C-CEEEEEE-EHHHhhc-----c-----CccccHHHhCC
Confidence 456788899999999988878887887775 3 5566666 5545211 1 11235889998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ .+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 60 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 60 K--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred C--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 8 8999999999999999999999999999998899999999999975
No 82
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=4.6e-09 Score=76.45 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=69.0
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|++.......... + ...+..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~------------~--~~~~~~---- 63 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNN------------L--DLTVGE---- 63 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccc------------c--cCCHHH----
Confidence 6789999999999999999999999999998899999999999997431100000 0 000000
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....+.|..+++++.+++++.+++++|.+++
T Consensus 64 --~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~ 95 (120)
T cd04641 64 --ALERRSQDFEGVRTCSPDDCLRTIFDLIVKAR 95 (120)
T ss_pred --HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcC
Confidence 00123445567789999999999999998764
No 83
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.00 E-value=2.1e-09 Score=96.13 Aligned_cols=98 Identities=26% Similarity=0.272 Sum_probs=82.7
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
+..++++++|.+ ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++......
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------- 395 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-------------- 395 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC--------------
Confidence 455689999999 8999999999999999999999999999998899999999999987431100
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
.....++.++|.+++.++++++++.+++++|.++
T Consensus 396 -------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~ 429 (454)
T TIGR01137 396 -------------ANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEKN 429 (454)
T ss_pred -------------CCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHHC
Confidence 0123468899988889999999999999999765
No 84
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.00 E-value=1.8e-09 Score=77.30 Aligned_cols=110 Identities=28% Similarity=0.360 Sum_probs=85.7
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+++++++.+..+|.+.+.+.+..+++|++ + .+..+++ +..|.. .+..... ......++.++|.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-----------~-~~~~G~i-~~~~l~-~~~~~~~--~~~~~~~~~~~~~~ 66 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCE-----------N-DRLVGIV-TDRDIV-VRAVAEG--RDPDTTTVGDVMTR 66 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEee-----------C-CEEEEEE-EhHHHH-HHHhhcc--CCcccCCHHHhccC
Confidence 45778899999999999999999999886 3 5566666 555521 1111111 11223358899998
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.+.++.+++++.++++.|..++.+.+||++++|+++|+|+..|+++
T Consensus 67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 67 --GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred --CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 8999999999999999999999999999997799999999999975
No 85
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=2.5e-09 Score=76.56 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=86.0
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+.+++++.+..++.+.+.+.+..+++|++ +..++.+++ +..|.. +.+... ......+.++|.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-----------~~~~~~G~v-~~~~l~--~~~~~~---~~~~~~v~~~~~~ 65 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENVGSVVVVD-----------PDERPIGIV-TERDIV--RAVAAG---IDLDTPVSEIMTR 65 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEC-----------CCCCEEEEe-eHHHHH--HHHhcc---CCCccCHHHhccC
Confidence 45678888999999999888999999986 446666777 666621 111111 1123468899988
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus 66 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 66 --DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred --CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 8999999999999999999999999999998899999999999874
No 86
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.00 E-value=5.1e-09 Score=94.60 Aligned_cols=161 Identities=22% Similarity=0.264 Sum_probs=107.6
Q ss_pred CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA 77 (207)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~ 77 (207)
|-+.+|+-..+.. .+.+.....-..+..++|.+---. +.....++ -+....+.++. .... ......+..-
T Consensus 13 dv~l~p~~~~~~~--~~~~~~t~l~~~~~~~~Piv~a~m-~~vT~~ela~ava~~GglG~i~-~~~~~e~~~~~I~~v-- 86 (486)
T PRK05567 13 DVLLVPAHSEVLP--NDVDLSTQLTKNIRLNIPLLSAAM-DTVTEARMAIAMAREGGIGVIH-KNMSIEEQAEEVRKV-- 86 (486)
T ss_pred ceEecccccCcCc--ccccccchhhhhcCcCcCEEeCCC-CCcCHHHHHHHHHhCCCCCEec-CCCCHHHHHHHHHHh--
Confidence 4456676555422 345555555556666777443212 22222333 22333333333 2222 1122222221
Q ss_pred CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
..++++|.+ ++.++++++++.++++.|.+++++.+||+|++++++|+|+.+|+....
T Consensus 87 -----k~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~---------------- 143 (486)
T PRK05567 87 -----KRSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET---------------- 143 (486)
T ss_pred -----hhhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc----------------
Confidence 247789998 999999999999999999999999999999999999999999997421
Q ss_pred cchhhhHHHHHHHHhhhcCCccccccc-CCCeEecCCCCHHHHHHHHhhcC
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|+ ++++++++++++.+++++|.+++
T Consensus 144 ----------------~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~ 178 (486)
T PRK05567 144 ----------------DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHR 178 (486)
T ss_pred ----------------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcC
Confidence 12346888998 68899999999999999998764
No 87
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.00 E-value=1.2e-09 Score=98.93 Aligned_cols=115 Identities=11% Similarity=0.172 Sum_probs=94.4
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc---CCceeeeecccchhhhhhhhhhccCCCCCccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS---SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVG 86 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~---~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~ 86 (207)
.+++++.|+.+..+|.+.+.+++++.++|++ + ..++.+++ +..|.... . ....+|+
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD-----------~~~~~GklvGIV-T~~DL~~v-------~--~~~~~V~ 166 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTE-----------TGTMGSKLLGYV-TKRDWDFV-------N--DRETKLS 166 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEe-----------CCCcCCeEEEEE-EHHHHhhc-------c--ccCCcHH
Confidence 4567899999999999999999999999996 2 25677888 77773111 0 1245799
Q ss_pred ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccC
Q 028558 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145 (207)
Q Consensus 87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~ 145 (207)
++|++..+++++++++++.++++.|.+++.+.+||+|++++++|+||++|+.+....+.
T Consensus 167 eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~ 225 (505)
T PLN02274 167 EVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPK 225 (505)
T ss_pred HHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcC
Confidence 99998223889999999999999999999999999998899999999999998775543
No 88
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.99 E-value=4.2e-09 Score=74.42 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=69.7
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++.+.+||+| +|+++|+++.+++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~-------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH-------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc--------------------------------
Confidence 578899999999999999999999999998 68999999999998631
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...++.++|.++++++++++++.++++.|.+++
T Consensus 49 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 81 (105)
T cd04599 49 -PNRLVADAMTREVVTISPEASLLEAKRLMEEKK 81 (105)
T ss_pred -ccCCHHHHccCCCEEECCCCCHHHHHHHHHHcC
Confidence 123577888889999999999999999998765
No 89
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.99 E-value=3.8e-09 Score=79.11 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=74.4
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHH---HHHH
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE---VQKL 170 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 170 (207)
++.++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+++........ ..++ ..|...++ ....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~ 74 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNER-----GLPK--KSIKMKRKAGQKRYR 74 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhccccc-----ccch--hhhhhhhhccccccc
Confidence 678899999999999999999999999999889999999999999754211100 0000 00100000 0000
Q ss_pred HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
.......++.++|.++++++.+++++.++++.|.++
T Consensus 75 ~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~ 110 (135)
T cd04621 75 YVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEA 110 (135)
T ss_pred ccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHc
Confidence 001124568899988899999999999999999765
No 90
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.99 E-value=1.8e-09 Score=76.88 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=81.6
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
.+++.++.+..++.+.+.+++...++|++ +...+.+++ +..+... . .....++.++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~~------~---~~~~~~v~~~~~~ 62 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVVD-----------DDGKLVGIV-TNRDLRF------E---TDLDKPVSEVMTP 62 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEEc-----------CCCEEEEEE-EhhHeee------c---ccCCCCHHHhccc
Confidence 45678888889999999888998888886 445556666 5444210 0 1123468899987
Q ss_pred cCCceEECC-CCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~-~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.+..+.+ ++++.++++.|.+++.+.+||++++|+++|+||.+|+++
T Consensus 63 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 63 --ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred --CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 6676666 999999999999999999999998899999999999874
No 91
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.99 E-value=1.8e-09 Score=77.18 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=78.5
Q ss_pred ccCCCCCCcccccccccC-----CCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 15 LRAPPAGRTSGRTSFALQ-----LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-----v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
+.++.+..++.+.+.+++ +..++|++ +..+..+++ +..+. ... ....+++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd-----------~~~~~~G~v-~~~~l------~~~----~~~~~v~~~~ 59 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVD-----------EEGRLLGVV-SLRDL------LLA----DPDTPVSDIM 59 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEEC-----------CCCCEEEEE-EHHHH------hcC----CCcchHHHHh
Confidence 466777788888877666 46677775 445556666 44442 110 1234688999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
.+ ++.++.+++++.++++.|..++.+.+||+|++|+++|+||..|+++.
T Consensus 60 ~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 60 DT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred CC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 88 89999999999999999999999999999988999999999999863
No 92
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.99 E-value=2.1e-09 Score=80.49 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=85.3
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC--------------
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA-------------- 77 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~-------------- 77 (207)
+++++++.+..+|.+.+.+.+.+.++|++ +.+++.+++ +..|... .......
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d-----------~~~~~~Giv-~~~dl~~--~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVVD-----------DNGKPVGVI-TYRDLAF--AEFEDNERGLPKKSIKMKRKA 68 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEEC-----------CCCCEEEEE-eHHHHHH--Hhhcccccccchhhhhhhhhc
Confidence 45778899999999999989999999997 455666666 5555211 1100000
Q ss_pred -------CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 78 -------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 78 -------~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
......+++++|.+ ++..+.+++++.++++.|.+++.+++||+++ |+++|+||.+|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 69 GQKRYRYVKEVPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccccccccccccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 01123478999998 8999999999999999999999999999996 89999999999875
No 93
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.99 E-value=4.7e-09 Score=77.20 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=73.5
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.+++++|.+.+.+.+||+|++|+++|+++..|+.+.+....... .+ .........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~----~~----------~~~~~~~~~ 67 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKA----RT----------GDRSGEKER 67 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhc----ch----------hhhhhhhhh
Confidence 6788999999999999999999999999998899999999999986431100000 00 000000001
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.+++++|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~ 101 (128)
T cd04632 68 MLDLPVYDAMSSPVITASPNDSVRDAVDRMLEND 101 (128)
T ss_pred hccCcHHHHhcCCCceECCCCcHHHHHHHHHhCC
Confidence 1235688899888999999999999999998753
No 94
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.99 E-value=7.7e-09 Score=93.49 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=108.7
Q ss_pred CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA 77 (207)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~ 77 (207)
|-+.+|+-..+ .+.+.+...-.-..+..++|.+---. +......+ -+....+.++. .... ......+..
T Consensus 22 dv~l~p~~~~~--~~~~v~~~t~l~~~~~l~~Pii~a~M-~~vt~~~ma~a~a~~GglGvi~-~~~~~e~~~~~v~k--- 94 (495)
T PTZ00314 22 DVILLPGYIDF--SRDDVDLSTRLTRNIRLKIPIVSSPM-DTVTEHKMAIAMALMGGIGVIH-NNCSIEEQVEEVRK--- 94 (495)
T ss_pred ceEeccccccc--ccccccccccccCCcccCCceeecCc-cccccHHHHHHHHHCCCeEEec-CCCCHHHHHHHHhh---
Confidence 44566766655 33444444444455666777442222 23333333 34555565554 3333 212222221
Q ss_pred CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC---CcEEEEEehhhHHhhhcccCCCCCCCCCC
Q 028558 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMF 154 (207)
Q Consensus 78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~dl~~~~~~~~~~~~~~~~~ 154 (207)
....++.|.. +++++++++++.+++++|.+++++.+||+|++ ++++|+|+.+|+....
T Consensus 95 ----vk~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~------------- 155 (495)
T PTZ00314 95 ----VKRFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK------------- 155 (495)
T ss_pred ----cccccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-------------
Confidence 1246678888 89999999999999999999999999999963 7999999999997421
Q ss_pred CcccchhhhHHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|++ +++++++++++.+++++|.+++
T Consensus 156 -------------------~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~ 191 (495)
T PTZ00314 156 -------------------DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESR 191 (495)
T ss_pred -------------------cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcC
Confidence 134578999987 7899999999999999998763
No 95
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.97 E-value=1.6e-09 Score=79.05 Aligned_cols=112 Identities=22% Similarity=0.354 Sum_probs=85.3
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccC---------CCCC
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAA---------PSSG 81 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~---------~~~~ 81 (207)
++++++..+..++.+.+.+.+...++|++ ++ .++.+++ +..|.. +.+..... ....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d-----------~~~~~~~G~v-~~~dl~--~~~~~~~~~~~~~~~~~~~~~ 68 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVD-----------EGTGKLVGII-TATDIL--KYLGGGEKFNKIKTGNGLEAI 68 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEe-----------CCCCEEEEEE-EHHHHH--HHhhccchhccccccccchhh
Confidence 45778888999999999989988888885 33 5566666 665521 11111000 0112
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
..++.++|.+ ++.++++++++.++++.|.+++.+.+||++++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3468899988 8999999999999999999999999999997799999999999975
No 96
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.97 E-value=2.2e-09 Score=77.60 Aligned_cols=113 Identities=20% Similarity=0.310 Sum_probs=85.2
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh------ccCCCCCcccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN------SAAPSSGVYTV 85 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~------~~~~~~~~~~v 85 (207)
+.++.++.+..++.+.+.+.+...++|++ . .++.+++ +..+......... .........++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~i-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVVD-----------R-GKLVGIV-TDRDLKLASPSKATTLDIWELYYLLSKIKV 69 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEec-----------C-CeEEEEE-eHHHHHHhhhcccccccchhhhhhhcccCH
Confidence 45678888999999999988999999886 3 4556666 6655211100000 00000123568
Q ss_pred cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.++|.+ ++.++++++++.++++.|.+++.+.+||++++|+++|+||.+|+++
T Consensus 70 ~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 70 SDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred HHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 899998 8999999999999999999999999999997799999999999975
No 97
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.97 E-value=7e-09 Score=74.32 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=71.1
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+..... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~---------------------------~~ 54 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES---------------------------EE 54 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh---------------------------hh
Confidence 357889999999999999999999999999889999999999998642100 01
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
....++.++|.++++++.+++++.+++++|.++
T Consensus 55 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~ 87 (113)
T cd04615 55 LKDAKVREVMNSPVITIDANDSIAKARWLMSNN 87 (113)
T ss_pred hcCCcHHHhccCCceEECCCCcHHHHHHHHHHc
Confidence 134568889988899999999999999999765
No 98
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.97 E-value=1.1e-08 Score=91.69 Aligned_cols=90 Identities=31% Similarity=0.510 Sum_probs=78.5
Q ss_pred cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC---CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
+.++.|.+ ++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++...
T Consensus 81 ~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~------------------- 139 (450)
T TIGR01302 81 RAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK------------------- 139 (450)
T ss_pred cccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-------------------
Confidence 46788988 89999999999999999999999999999977 7999999999997521
Q ss_pred hhhHHHHHHHHhhhcCCccccccc-CCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMT-PAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|+ .+++++++++++.+++++|.+++
T Consensus 140 -------------~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~ 174 (450)
T TIGR01302 140 -------------DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHR 174 (450)
T ss_pred -------------cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcC
Confidence 12456889998 48999999999999999998763
No 99
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.97 E-value=4.3e-09 Score=78.28 Aligned_cols=104 Identities=32% Similarity=0.530 Sum_probs=75.5
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHH-HH----H
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFN-EV----Q 168 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~ 168 (207)
++.++.+++++.++++.|.+++++++||+|++|+++|+|+..|+.+........ ....|.... .. .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 73 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTER---------RRARWLDLLAGAEELAA 73 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcc---------hhhhHHHHhcchHHHHH
Confidence 688999999999999999999999999999889999999999998753211100 000111000 00 0
Q ss_pred HHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 169 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 169 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
... .....++.++|.++++++.+++++.+++++|.++|
T Consensus 74 ~~~-~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 111 (135)
T cd04586 74 AFV-RSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHR 111 (135)
T ss_pred HHH-HhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcC
Confidence 000 11345688999888999999999999999998764
No 100
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.97 E-value=2.5e-09 Score=75.54 Aligned_cols=103 Identities=19% Similarity=0.255 Sum_probs=81.7
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++.+++++.+..++.+.+.+++...+.|++ +.+..++. +..+.... .....+.++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d------------~~~~~Giv-~~~~l~~~----------~~~~~~~~~~~ 58 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE------------DGKLVGII-TSRDVRRA----------HPNRLVADAMT 58 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE------------CCEEEEEE-ehHHhhcc----------cccCCHHHHcc
Confidence 345678888889999888888888888885 24455666 55552110 01235889998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++++++++.++++.|.+++.+.+||+|+ |+++|+||.+|++.
T Consensus 59 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 59 R--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred C--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 8 8999999999999999999999999999996 99999999999863
No 101
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.96 E-value=5.2e-09 Score=76.05 Aligned_cols=96 Identities=28% Similarity=0.329 Sum_probs=73.7
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++.+.|.+.+++.+||++++|+++|+++..++++....... . .+.. ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~-~-----------~~~~------~~~~ 63 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLS-D-----------NGEE------SLTK 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccc-c-----------cccc------cccc
Confidence 57889999999999999999999999999988999999999999875421000 0 0000 0001
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.++++.|.+++
T Consensus 64 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (122)
T cd04803 64 ERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENK 97 (122)
T ss_pred ccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcC
Confidence 1345688899889999999999999999998754
No 102
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.96 E-value=2.6e-09 Score=76.41 Aligned_cols=110 Identities=20% Similarity=0.231 Sum_probs=86.5
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+.++.++.+..++.+.+.+.+.++++|.+ ...++.+++ +..|.. +.+.. .......++.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~G~v-~~~~l~--~~~~~--~~~~~~~~v~~~~~~ 66 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVVD-----------DDGRLVGIV-SLDDIR--EILFD--PSLYDLVVASDIMTK 66 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEEC-----------CCCCEEEEE-EHHHHH--HHHhc--ccccccEEHHHhccC
Confidence 45678888999999999888999888886 445666777 655521 11111 111223679999999
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~ 139 (207)
++.++++++++.++++.|.+.+.+.+||+++ +|+++|+++.+|++.
T Consensus 67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 67 --PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred --CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 8999999999999999999999999999997 789999999999874
No 103
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.95 E-value=2.8e-09 Score=76.18 Aligned_cols=109 Identities=26% Similarity=0.347 Sum_probs=84.9
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++.+++++.+..++.+.+.+.+...++|++ . .+..+++ +..+... ...... .....++.++|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~-----------~-~~~~G~v-~~~~l~~-~~~~~~---~~~~~~i~~~~~ 64 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD-----------D-GRLVGIV-TDRDLRN-RVVAEG---LDPDTPVSEVMT 64 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE-----------C-CEEEEEE-EhHHHHH-HHhccC---CCccCCHHHHhC
Confidence 355778899999999999888888898886 3 4556666 5555211 111111 112356889998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
. ++.++++++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 65 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 65 A--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred C--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 8 8999999999999999999999999999996 89999999999975
No 104
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.95 E-value=2.4e-09 Score=79.34 Aligned_cols=111 Identities=22% Similarity=0.275 Sum_probs=83.9
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC--------------
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA-------------- 77 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~-------------- 77 (207)
+++++++.+..++.+.+.+.++.+++|++ +..++.+++ +..+.. +.+.....
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-----------~~~~~~G~i-~~~~l~--~~~~~~~~~~~~~~~~~~~~~~ 68 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKISGVPVVD-----------NEGRVVGIV-SEGDLI--RKIYKGKGLFYVTLLYSVIFLD 68 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCCCccceEC-----------CCCCEEEEE-eHHHHH--HHHhccCCcccccccccccccc
Confidence 45788999999999999989999998886 444555666 544421 11111000
Q ss_pred ----CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 78 ----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 78 ----~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
......++.++|.+ ++..+.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 69 ~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 69 ESKIKKLLGKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred hHHHHHHcCCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 00111268899988 8999999999999999999999999999997 99999999999975
No 105
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.95 E-value=8.8e-09 Score=73.53 Aligned_cols=84 Identities=25% Similarity=0.313 Sum_probs=71.5
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.+++.+.++.++.+.|.+++++.+||+|+ |+++|+|+..|+.+.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~-----------------------------~ 52 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRH-----------------------------G 52 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence 6789999999999999999889999999997 999999999999864210 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.+++++|.+++
T Consensus 53 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 86 (110)
T cd04595 53 LGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHD 86 (110)
T ss_pred cccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcC
Confidence 1235688899889999999999999999998764
No 106
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.94 E-value=2.5e-09 Score=76.54 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=82.3
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+.++.+..+..++.+.+.+++..++++.+ +.++.+++ +..|... .+... .......+++++|.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~------------~~~~~G~v-~~~dl~~--~~~~~-~~~~~~~~v~~~~~~ 66 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVME------------RGELVGLL-TFREVLQ--AMAQH-GAGVLDTTVRAIMNP 66 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEee------------CCEEEEEE-EHHHHHH--HHHhc-CCchhcCCHHHHhCC
Confidence 34678888889998888888887777764 35566677 6666211 11110 011123468999988
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.+.++++++++.++++.|.+++...+||++ +|+++|+||.+|+++
T Consensus 67 --~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 67 --EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred --CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 889999999999999999999999999998 589999999999975
No 107
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.94 E-value=1e-08 Score=73.17 Aligned_cols=86 Identities=27% Similarity=0.352 Sum_probs=71.1
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.+++++.++.++.+.|.+++++.+||+|+ |+++|+++.+|+.+.....+ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~---------------------------~ 53 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG---------------------------L 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC---------------------------C
Confidence 6788999999999999999989999999996 99999999999986421100 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|..+++++.+++++.+++++|.+++
T Consensus 54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 87 (111)
T cd04800 54 DPDTPVSEVMTAPPITIPPDATVFEALLLMLERG 87 (111)
T ss_pred CccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcC
Confidence 1234678888889999999999999999998764
No 108
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.94 E-value=4.4e-09 Score=95.03 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=92.0
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.+++++.++.+..++.+.+.+++++.++|++ +..++.+++ +..|... .. ....++.++|
T Consensus 95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd-----------~~g~lvGiV-t~~DL~~------~~---~~~~~V~dim 153 (486)
T PRK05567 95 TDPVTVTPDTTLAEALALMARYGISGVPVVD-----------ENGKLVGII-TNRDVRF------ET---DLSQPVSEVM 153 (486)
T ss_pred CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEc-----------cCCEEEEEE-EHHHhhh------cc---cCCCcHHHHc
Confidence 4567899999999999999999999999997 566777888 7666311 00 1124689999
Q ss_pred c-ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 T-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~-~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ . +++++++++++.++++.|.+++++.+||+|++|+++|+||.+||++..
T Consensus 154 ~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 154 TKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred CCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 8 5 799999999999999999999999999999999999999999999764
No 109
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.94 E-value=4.3e-09 Score=94.24 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=80.3
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHH-----cCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCC
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~-----~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~ 154 (207)
....+++++|++ ++.++++++++.++++.|.+ ++...+||+|++++++|+|+.+|++...
T Consensus 128 ~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~------------- 192 (449)
T TIGR00400 128 YSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK------------- 192 (449)
T ss_pred CCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC-------------
Confidence 445689999999 99999999999999999975 4567899999889999999999997521
Q ss_pred CcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.+.+++++|++++++++++++++++++.|.+++
T Consensus 193 --------------------~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~ 225 (449)
T TIGR00400 193 --------------------PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYD 225 (449)
T ss_pred --------------------CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcC
Confidence 234689999988999999999999999998763
No 110
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.93 E-value=7.6e-09 Score=74.07 Aligned_cols=87 Identities=25% Similarity=0.272 Sum_probs=72.0
Q ss_pred CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
+++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++..++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~--------------------------- 54 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL--------------------------- 54 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC---------------------------
Confidence 36788999999999999998888999999998899999999999987531100
Q ss_pred hhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
.....++.++|.++++++.+++++.+++++|.++
T Consensus 55 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 88 (114)
T cd04604 55 DILTLPVADVMTRNPKTIDPDALAAEALELMEEN 88 (114)
T ss_pred ccccCCHHHhhccCCeEECCCCcHHHHHHHHHHc
Confidence 0122468899988899999999999999999765
No 111
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.93 E-value=1.2e-08 Score=72.99 Aligned_cols=87 Identities=31% Similarity=0.376 Sum_probs=70.6
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+++.+.+||+++ |+++|+|+.+|+++.....+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL--------------------------D 54 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC--------------------------C
Confidence 5788999999999999999999999999997 999999999999753211000 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.++++.|.+++
T Consensus 55 ~~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~ 88 (113)
T cd04587 55 PESTLVERVMTPNPVCATSDTPVLEALHLMVQGK 88 (113)
T ss_pred cCcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcC
Confidence 1124688899888999999999999999998754
No 112
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.93 E-value=3.8e-09 Score=75.26 Aligned_cols=108 Identities=26% Similarity=0.330 Sum_probs=84.9
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
.++++++.+..++.+.+.+.+...++|++ + .+..++. +..|... ..... ......+.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~-~~~~G~v-~~~dl~~--~~~~~---~~~~~~~~~~~~~ 64 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVVD-----------D-GRLVGIV-TLADIRR--VPAEG---REATVLVGDVMTR 64 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEee-----------C-CeEEEEE-EHHHHHH--HHhcC---cccccCHHHhccC
Confidence 45678899999999999888888888886 4 5566676 6666211 11111 1112457889998
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++.+++++.++++.|.+++.+.+||++++|+++|+||..|+.+
T Consensus 65 --~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 65 --DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred --CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 8999999999999999999999999999997799999999999875
No 113
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.93 E-value=8.4e-09 Score=76.40 Aligned_cols=107 Identities=29% Similarity=0.355 Sum_probs=74.8
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..++.+....... ......+...... .+ ...+.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~-~~~~~~~~~~~~~---~~---~~~~~ 74 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKG-LFYVTLLYSVIFL---DE---SKIKK 74 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCC-ccccccccccccc---ch---HHHHH
Confidence 57889999999999999999999999999988999999999999875421110 0000000000000 00 01111
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++.+.+++++.+++++|.++|
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 108 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKN 108 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCC
Confidence 2234788899888999999999999999998764
No 114
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.93 E-value=9.7e-09 Score=73.16 Aligned_cols=85 Identities=32% Similarity=0.462 Sum_probs=70.4
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~---------------------------- 52 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGR---------------------------- 52 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCc----------------------------
Confidence 6788999999999999999989999999997 99999999999987431000
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.++++.|.+++
T Consensus 53 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 86 (111)
T cd04612 53 EATVLVGDVMTRDPVTASPDETLRDALKRMAERD 86 (111)
T ss_pred ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCC
Confidence 0112567788888999999999999999998764
No 115
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.93 E-value=8.1e-09 Score=75.00 Aligned_cols=96 Identities=19% Similarity=0.300 Sum_probs=72.8
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+++....... ..+ + .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~---------~~~--~-------~~~~~ 63 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTS---------VED--Q-------QRTQT 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhcccccc---------ccc--h-------hhhhh
Confidence 67889999999999999999999999999988999999999999864210000 000 0 00000
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++++++++.++++.|.+++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 97 (122)
T cd04635 64 KASPTVEKIMSTPVYSVTPDDSIATAVELMLEHD 97 (122)
T ss_pred hccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcC
Confidence 1345678888888999999999999999998754
No 116
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.92 E-value=1.4e-08 Score=72.52 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=71.1
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
+++++++++++.++++.|.+++...+||+|+ |+++|+++..|+++...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~---------------------------~ 53 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG---------------------------L 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC---------------------------C
Confidence 5678899999999999999999999999997 89999999999986431000 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++.+.+++++.+++++|.+++
T Consensus 54 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 87 (111)
T cd04589 54 PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHR 87 (111)
T ss_pred CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhC
Confidence 1245688899888999999999999999998764
No 117
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.92 E-value=4e-09 Score=77.59 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=85.7
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc----------CCCCC
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA----------APSSG 81 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~----------~~~~~ 81 (207)
+++++++.+..++.+.+.+.+++.++|++ ++..+.+++ +..|... .+..... .....
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-----------~~~~~~G~i-t~~dl~~-~~~~~~~~~~~~~~~~~~~~~~ 69 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVD-----------DNGKLTGIV-TRHDIVD-FVVRDRDKARTGDRSGEKERML 69 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEEC-----------CCCcEEEEE-EHHHHHH-HHhhhhhhcchhhhhhhhhhhc
Confidence 45778999999999999999999999996 445666777 6666211 1111000 00012
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEc--CCCcEEEEEehhhHHh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA 139 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd--~~g~lvGiVt~~dl~~ 139 (207)
..++.++|.+ +++++++++++.++++.|.+++...+||++ ++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 3468899988 899999999999999999999999999985 3689999999999874
No 118
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.91 E-value=6.1e-09 Score=74.53 Aligned_cols=109 Identities=19% Similarity=0.359 Sum_probs=83.9
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+++++++.+..++.+.+.+.+.+.+++++ ++ +..++. +..|... .+.... ......++.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~-~~~G~v-~~~dl~~-~~~~~~--~~~~~~~~~~~~~~ 66 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVD-----------NE-KPVGII-TERDLVK-KVVSRN--LKPREVPVGEVMST 66 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEE-----------CC-EEEEEE-EHHHHHH-HHhhcc--CCcccCCHHHhcCC
Confidence 45678999999999999888899998885 33 556666 5555211 111111 11234578899988
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++++++++.++++.|.+++.+.+||+|++ +++|+|+.+|+++
T Consensus 67 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 67 --PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred --CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 89999999999999999999999999999864 9999999999874
No 119
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.91 E-value=1.7e-08 Score=71.86 Aligned_cols=85 Identities=27% Similarity=0.375 Sum_probs=70.8
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++.+.+||+++ |+++|+++.+|+.+..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~----------------------------~ 52 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASG----------------------------P 52 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcC----------------------------C
Confidence 5788999999999999999989999999986 8999999999998753100 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++++++++.++++.|.+.+
T Consensus 53 ~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 86 (111)
T cd04611 53 DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHG 86 (111)
T ss_pred CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcC
Confidence 0235688888888999999999999999998653
No 120
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.91 E-value=1.6e-08 Score=72.04 Aligned_cols=83 Identities=31% Similarity=0.389 Sum_probs=70.2
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++++.+||+++ |+++|+++.+|+++.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~-----------------------------~ 51 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR-----------------------------G 51 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc-----------------------------c
Confidence 6788999999999999999999999999997 999999999999874210 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
....++.++|..+++++++++++.++++.|.+.
T Consensus 52 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 84 (110)
T cd04588 52 LELAKVKDVMTKDVITIDEDEQLYDAIRLMNKH 84 (110)
T ss_pred ccccCHHHHhcCCceEECCCCCHHHHHHHHHhc
Confidence 112467788888899999999999999999765
No 121
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.91 E-value=3.5e-09 Score=75.25 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=80.4
Q ss_pred ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccccc
Q 028558 13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK 92 (207)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~ 92 (207)
++++++.+..++...+.+.+.+.++|++ + .+..+++ +..|. .... ..++.++|.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~v-~~~~l------~~~~-----~~~~~~~~~~- 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD-----------Y-NKFLGAV-YLKDI------ENAT-----YGDVVDYIVR- 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE-----------C-CEEEEEE-EHHHH------hhhc-----ccchhhhhhc-
Confidence 3678888999999999999999999986 4 5555666 44442 1100 1247788988
Q ss_pred CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
...++++++++.++++.|.+++...+||++ +|+++|++|.+|+..
T Consensus 59 -~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 -GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 899999999999999999999999999998 689999999999874
No 122
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.91 E-value=2.6e-09 Score=77.73 Aligned_cols=113 Identities=21% Similarity=0.268 Sum_probs=86.2
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC---C-----CCC
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA---P-----SSG 81 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~---~-----~~~ 81 (207)
++++++++..+..++.+.+.+.++..++|++ . .++.+++ +..+... .+..... . ...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~~~~~ 65 (122)
T cd04637 1 TRVVTVEMDDRLEEVREIFEKHKFHHLLVVE-----------D-NELVGVI-SDRDYLK--AISPFLGTAGETEKDLATL 65 (122)
T ss_pred CCceEeCCCCCHHHHHHHHHhCCCCEEEEEe-----------C-CeEEEEE-EHHHHHH--HHHHHhccccchHHHHHHH
Confidence 3567889999999999999989999999986 3 4566666 5555211 1100000 0 001
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
..+++++|.+ ++..+++++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 2358899988 8999999999999999999999999999998899999999999975
No 123
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.91 E-value=1.3e-08 Score=74.79 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=69.9
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++++.+||+|++|+++|+++..|+++.......... .+.. ......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----~~~~--------~~~~~~-- 67 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----YRTI--------TFKELS-- 67 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----ccch--------hhhhhh--
Confidence 57889999999999999999999999999988999999999999875311000000 0000 000000
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
..-....+.|..+++++++++++.+++++|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~ 101 (126)
T cd04642 68 EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANK 101 (126)
T ss_pred hhcccccccccCCCeEECCCCcHHHHHHHHHHhC
Confidence 0001233566778899999999999999998753
No 124
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.90 E-value=3.7e-09 Score=76.70 Aligned_cols=111 Identities=23% Similarity=0.345 Sum_probs=84.6
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc--------CCCCCc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA--------APSSGV 82 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~--------~~~~~~ 82 (207)
+++.+.+..+..++.+.+.+++...+.|++ . .++.++. +..+... .+.... ......
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~-----------~-~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~~~~~~ 66 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE-----------G-GKLVGIV-TEKDIAD--ALRSFRPLVRDRHQERRIRN 66 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE-----------C-CEEEEEE-chHHHHH--hhhhhhhcccchhhhhhhhc
Confidence 355778888999999999888999998886 2 4555666 5555211 111000 001234
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 67 LPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred cCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 568899988 8999999999999999999999999999997 99999999999975
No 125
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.90 E-value=6.3e-09 Score=74.84 Aligned_cols=109 Identities=25% Similarity=0.365 Sum_probs=87.2
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
..++++.++.+..+|...|.++++..+.+.+ ...+.+++ +.+|...... .. .....++.++|
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~------------~~~l~Gii-t~~di~~~~~-~~----~~~~~~v~~v~ 68 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVD------------DGKLVGII-TERDILRALA-AG----GKRLLPVKEVM 68 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEee------------CCEEEEEE-EHHHHHHHHh-cc----CCccccHHHhc
Confidence 3567899999999999999999999999885 22577777 7777311111 11 01111589999
Q ss_pred cccCCceEECCCCCHHHHHHHHHH-cCCCEeEEEcCCC-cEEEEEehhhHH
Q 028558 90 TTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL 138 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~-~~~~~lpVvd~~g-~lvGiVt~~dl~ 138 (207)
++ ++.++.++.++.++.+.|.+ ++++++||+++++ +++|++|.+|+.
T Consensus 69 ~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 69 TK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 98 89999999999999999999 7999999999875 999999999973
No 126
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.90 E-value=7.4e-09 Score=74.06 Aligned_cols=108 Identities=20% Similarity=0.198 Sum_probs=84.3
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
.++++++.+..++...|.+.+...++|++ + .+..+++ +..|... .... .......++.++|.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d-----------~-~~~~G~v-~~~~l~~--~~~~--~~~~~~~~i~~~~~~ 65 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRD-----------G-DPRLGIV-TRTDLLD--AVLL--DGLPSSTPVGEIATF 65 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEec-----------C-CeEEEEE-EHHHHHH--HHHc--CCCCCCCCHHHHhCC
Confidence 34678888999999999888999999986 3 4566666 6555211 1111 111224468899998
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++..+++++++.++++.|.+++...+||+++ |+++|+||..|+.+
T Consensus 66 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 66 --PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred --CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 8999999999999999999999999999984 89999999999875
No 127
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.89 E-value=1.1e-08 Score=74.55 Aligned_cols=98 Identities=26% Similarity=0.305 Sum_probs=72.7
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
++.++.++.++.++++.|.+++.+.+||+|++ |+++|+|+..|+.+......... .++. .. ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~-----------~~~~-~~----~~ 65 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFN-----------KIKT-GN----GL 65 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhc-----------cccc-cc----cc
Confidence 57889999999999999999999999999987 99999999999987542100000 0000 00 00
Q ss_pred hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.++++.|.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 100 (125)
T cd04631 66 EAINEPVRSIMTRNVITITPDDSIKDAAELMLEKR 100 (125)
T ss_pred hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcC
Confidence 01234678888888999999999999999998753
No 128
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.89 E-value=4.3e-09 Score=76.26 Aligned_cols=111 Identities=22% Similarity=0.289 Sum_probs=85.1
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC-------CCCCccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA-------PSSGVYT 84 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~-------~~~~~~~ 84 (207)
+.+++++.+..+|.+.+.+.+..+++|++ ++.++.+++ +..+... ....... ......+
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d-----------~~~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 68 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVVD-----------EEGRLVGIV-TDRDLRD--ASPSPFTTLSEHELYLLLKMP 68 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEEC-----------CCCcEEEEE-EHHHHHH--HhhhhcccchhhhhhhhcCcC
Confidence 45778889999999998888888898886 445666666 5555211 1100000 0123456
Q ss_pred ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+.++|.+ .+.++++++++.++++.|.+++...+||+++ |+++|+++.+|+++
T Consensus 69 v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 69 VKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred HHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 8899998 8999999999999999999999999999986 89999999999875
No 129
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.89 E-value=1.5e-08 Score=71.85 Aligned_cols=77 Identities=27% Similarity=0.192 Sum_probs=66.7
Q ss_pred eEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhhhc
Q 028558 96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTN 175 (207)
Q Consensus 96 ~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (207)
.++++++++.++++.|.+.++..+||+|+ |+++|+++.+|+.+..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~---------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT---------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc----------------------------------
Confidence 57899999999999999999999999997 9999999999998631
Q ss_pred CCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 176 GKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 176 ~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
..++.++|.+.++++++++++.++++.|.+++
T Consensus 49 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~ 80 (104)
T cd04594 49 YGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNK 80 (104)
T ss_pred ccchhhhhhcCCcEEcCCCCHHHHHHHHHHcC
Confidence 12466788888899999999999999998753
No 130
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.89 E-value=1.7e-08 Score=71.07 Aligned_cols=70 Identities=26% Similarity=0.381 Sum_probs=62.1
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
+++++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+.+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 678899999999999999999999999999889999999999998621
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.++++++++++.+++++|.+++
T Consensus 50 ------------~~~~v~~~~~l~~a~~~m~~~~ 71 (96)
T cd04614 50 ------------EVVTATKRTTVSECAQKMKRNR 71 (96)
T ss_pred ------------CcEEecCCCCHHHHHHHHHHhC
Confidence 1778999999999999998764
No 131
>PRK11573 hypothetical protein; Provisional
Probab=98.88 E-value=1e-08 Score=90.84 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=81.1
Q ss_pred CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
.+++.+|+++|+|+.++.+++.++++.++++.+.+++++++||.+++ ++++|+|+.+|++..... +.
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~-~~----------- 250 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE-KK----------- 250 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc-cC-----------
Confidence 47778999999999999999999999999999999999999999754 789999999999863210 00
Q ss_pred cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
......+.+++ +++..|++++++.++++.|+++
T Consensus 251 ---------------~~~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~ 283 (413)
T PRK11573 251 ---------------EFTKENMLRAA-DEIYFVPEGTPLSTQLVKFQRN 283 (413)
T ss_pred ---------------cCCHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhc
Confidence 00112344565 5788999999999999999875
No 132
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.87 E-value=3.4e-08 Score=89.43 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=75.0
Q ss_pred cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (207)
Q Consensus 86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (207)
+..|.+ +++++++++++.++++.|.+++++.+||+|+ +|+++|+||.+|+....
T Consensus 103 ~~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--------------------- 159 (505)
T PLN02274 103 RVGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--------------------- 159 (505)
T ss_pred cccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------------------
Confidence 334777 8999999999999999999999999999996 48999999999997521
Q ss_pred hHHHHHHHHhhhcCCcccccccCC--CeEecCCCCHHHHHHHHhhc
Q 028558 163 TFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~e~l~~m~~~ 206 (207)
....++.++|+++ .+++++++++.+++++|.++
T Consensus 160 -----------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~ 194 (505)
T PLN02274 160 -----------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDS 194 (505)
T ss_pred -----------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHc
Confidence 1346799999876 78999999999999999875
No 133
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.87 E-value=2.4e-08 Score=72.94 Aligned_cols=96 Identities=19% Similarity=0.106 Sum_probs=69.8
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
++.++++++++.++++.|.+++++++||+|++ |+++|+|+..|+++....... ..+ .. ....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~------------~~~-~~----~~~~ 64 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENAR------------SFP-GL----DPLY 64 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHH------------hcc-ch----hhhh
Confidence 67889999999999999999999999999987 899999999999874311000 000 00 0000
Q ss_pred hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....+.++|..++.++.+++++.++++.|.+++
T Consensus 65 -~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 98 (123)
T cd04627 65 -PIPLRDLTIGTSDVISINGDQPLIDALHLMHNEG 98 (123)
T ss_pred -hhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcC
Confidence 0011234567788899999999999999998764
No 134
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.87 E-value=2.9e-08 Score=70.92 Aligned_cols=87 Identities=28% Similarity=0.365 Sum_probs=70.6
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.+++++.++.++++.|.+++.+.+||+|+ ++++|+++..|+++.....+. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNL--------------------------K 54 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccC--------------------------C
Confidence 5788999999999999999999999999995 599999999999874311000 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.+++++|.+++
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 88 (112)
T cd04802 55 PREVPVGEVMSTPLITIDPNASLNEAAKLMAKHG 88 (112)
T ss_pred cccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcC
Confidence 1234678899888899999999999999998653
No 135
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.86 E-value=2e-08 Score=72.60 Aligned_cols=88 Identities=30% Similarity=0.426 Sum_probs=70.9
Q ss_pred CceEECCCCCHHHHHHHHHHcC-CCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~-~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
++.++++++++.++++.|...+ ++.+||+|+ |+++|+|+..|+.+..... | ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~----------------~--------~~~ 56 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTP----------------Y--------GRA 56 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhch----------------h--------hHH
Confidence 5778999999999999998877 889999998 9999999999998643100 0 000
Q ss_pred hhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
.....++.++|.++++++.+++++.+++.+|.++
T Consensus 57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 90 (119)
T cd04598 57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGR 90 (119)
T ss_pred HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcC
Confidence 0134578899998999999999999999999765
No 136
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.86 E-value=6.5e-09 Score=93.98 Aligned_cols=114 Identities=22% Similarity=0.223 Sum_probs=92.0
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
.+++++|+.+..+|.+.+.++++..++|++.+. ...++.+++ +..|.... .....+++++|+
T Consensus 105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~--------~~gkLvGIV-t~~DL~~~---------~~~~~~V~diMt 166 (495)
T PTZ00314 105 DPYVLSPNHTVADVLEIKEKKGFSSILITVDGK--------VGGKLLGIV-TSRDIDFV---------KDKSTPVSEVMT 166 (495)
T ss_pred CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc--------cCCeEEEEE-EHHHHhhc---------ccCCCCHHHhhC
Confidence 456899999999999999999999999996100 025677888 77773110 112457999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~ 142 (207)
+..++++++++.++.+++++|.+++.+.+||+|++++++|+||++|+++...
T Consensus 167 ~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 167 PREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 7557899999999999999999999999999999999999999999998653
No 137
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.85 E-value=1.9e-08 Score=71.55 Aligned_cols=82 Identities=40% Similarity=0.547 Sum_probs=68.8
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.+++++.++.++++.|.+++.+.+||+|++|+++|+++.+++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------- 50 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-------------------------------- 50 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc--------------------------------
Confidence 678899999999999999999999999999889999999999987421
Q ss_pred hcCCcccccccCCCeEecC-CCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRE-TTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~-~~~l~e~l~~m~~~g 207 (207)
....++.++|.+.+..+.+ ++++.+++++|.+++
T Consensus 51 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (110)
T cd04601 51 DLDKPVSEVMTPENLLTTVEGTSLEEALELLHEHK 85 (110)
T ss_pred cCCCCHHHhcccCceEEecCCCCHHHHHHHHHHhC
Confidence 1234678888777777777 999999999998764
No 138
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.85 E-value=2.4e-08 Score=72.31 Aligned_cols=96 Identities=30% Similarity=0.404 Sum_probs=72.6
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++++++||+|++|+++|+++..++.+....... ..+ .... ..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~-------------~~~----~~~~-~~ 63 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFT-------------TLS----EHEL-YL 63 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcc-------------cch----hhhh-hh
Confidence 57889999999999999999999999999988999999999999864211000 000 0000 01
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++++++++.+++++|.+++
T Consensus 64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~ 97 (121)
T cd04584 64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHR 97 (121)
T ss_pred hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcC
Confidence 2345688888888999999999999999998753
No 139
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=2.9e-08 Score=70.42 Aligned_cols=81 Identities=28% Similarity=0.400 Sum_probs=68.8
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.+++..|.+.+++.+||++++++++|+++.+++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 578889999999999999998999999999889999999999997521
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...++.++|.++++++.+++++.+++++|.+++
T Consensus 50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 82 (106)
T cd04638 50 -EEEQLALLMTRDPPTVSPDDDVKEAAKLMVENN 82 (106)
T ss_pred -ccchHHHHhcCCCceECCCCCHHHHHHHHHHcC
Confidence 122466777788899999999999999998764
No 140
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.85 E-value=6.2e-09 Score=93.07 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=86.2
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
+-..++.++|+. +++++++..++.+|...|...|.+.+.++++++...||||++|+.......+
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g-------------- 209 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG-------------- 209 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC--------------
Confidence 334578999999 9999999999999999999999999999999999999999999998653222
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
.....+++++|+.|+++++.++.+.+|+-.|.+.
T Consensus 210 -------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~ 243 (610)
T COG2905 210 -------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRN 243 (610)
T ss_pred -------------CCcccchhhhhccCceeecCcchHHHHHHHHHHh
Confidence 1346789999999999999999999999999765
No 141
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.84 E-value=2.8e-08 Score=71.75 Aligned_cols=96 Identities=30% Similarity=0.406 Sum_probs=72.5
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.+++++.++.++++.|.++++..+||+|+ |+++|+++..|+.+........ ...++ ... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~----------~~~~~----~~~---~ 63 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATT----------LDIWE----LYY---L 63 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhccccc----------ccchh----hhh---h
Confidence 5788999999999999999999999999997 9999999999998754211000 00000 000 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.+++.++++++++.+++..|.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 97 (122)
T cd04585 64 LSKIKVSDIMTRDPITVSPDASVEEAAELMLERK 97 (122)
T ss_pred hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcC
Confidence 1235688899889999999999999999998754
No 142
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.84 E-value=1e-08 Score=92.69 Aligned_cols=93 Identities=23% Similarity=0.265 Sum_probs=76.1
Q ss_pred ccccccccc-CCceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 84 ~v~~vm~~~-~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
.|+++|... .+..++++++++.++++.|.+++++.+||+|+ +|+++|+||.+|+....
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------------ 156 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------------ 156 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc------------------
Confidence 366676521 14579999999999999999999999999996 58999999999997421
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...+.++.++|++ +++++++++++.+++++|.+++
T Consensus 157 -------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~ 193 (502)
T PRK07107 157 -------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHK 193 (502)
T ss_pred -------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcC
Confidence 0134679999986 7789999999999999998864
No 143
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.84 E-value=3.5e-08 Score=70.56 Aligned_cols=87 Identities=22% Similarity=0.361 Sum_probs=69.3
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++.+.++|.+ +|+++|+++.+|+++.....+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA--------------------------G 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC--------------------------c
Confidence 578899999999999999888888887776 5999999999999875311000 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|..++.++++++++.+++++|.+++
T Consensus 55 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 88 (112)
T cd04625 55 VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERH 88 (112)
T ss_pred hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcC
Confidence 1234688899888899999999999999998753
No 144
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.84 E-value=3.1e-08 Score=70.13 Aligned_cols=79 Identities=34% Similarity=0.531 Sum_probs=68.3
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++++++.+.++.++++.|.+.+...+||+|+ ++++|+++..|++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~-------------------------------- 49 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD-------------------------------- 49 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC--------------------------------
Confidence 6888999999999999998888889999996 9999999999998521
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
...++.++|.+.++++.+++++.++++.|.++
T Consensus 50 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 81 (107)
T cd04610 50 -PDETVEEIMSKDLVVAVPEMDIMDAARVMFRT 81 (107)
T ss_pred -ccccHHHhCCCCCeEECCCCCHHHHHHHHHHh
Confidence 12357888888889999999999999999764
No 145
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.83 E-value=4e-08 Score=70.25 Aligned_cols=86 Identities=30% Similarity=0.518 Sum_probs=69.3
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++.+.|.+++++.+||+|+ |+++|+++..|++......+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~--------------------------~ 54 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR--------------------------D 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC--------------------------C
Confidence 6788999999999999999999999999997 999999999998732100000 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
....++.++|.+.+.++.+++++.++++.|.+.
T Consensus 55 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 87 (113)
T cd04622 55 PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREH 87 (113)
T ss_pred cccCCHHHhccCCccEECCCCCHHHHHHHHHHc
Confidence 112348889988899999999999999999765
No 146
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.83 E-value=3.7e-09 Score=80.54 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=89.1
Q ss_pred ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
+-|||.++|+.+..++.+.|-++|++-+.|.. ++.+.+-+ |+.+. .+.+..+. ......+|+++
T Consensus 72 ~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~------------~~k~VGsI-tE~~i--v~~~le~~-e~i~~~~vr~v 135 (187)
T COG3620 72 HSPVVSVSPDDSISDVVNLMRDKGISQLPVIE------------EDKVVGSI-TENDI--VRALLEGM-ESIRSLRVREV 135 (187)
T ss_pred cCCeeEECchhhHHHHHHHHHHcCCccCceee------------CCeeeeee-cHHHH--HHHHhccc-cchhhhhHHHH
Confidence 34899999999999999999999999999995 35555556 66662 12222221 34556789999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|.. .+++++++.++...-.++..+ ..+.|++ +|+++||||..|+++.+
T Consensus 136 M~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e-~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 136 MGE--PFPTVSPDESLNVISQLLEEH--PAVLVVE-NGKVVGIITKADIMKLL 183 (187)
T ss_pred hcC--CCCcCCCCCCHHHHHHHHhhC--CeEEEEe-CCceEEEEeHHHHHHHH
Confidence 999 999999999999888888765 4577885 79999999999999854
No 147
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.83 E-value=1e-08 Score=72.83 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=81.0
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..++...+.++++++++|++ + .++.+++ +..|.. +.+... ......++.++|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-----------~-~~~~G~v-~~~dl~--~~~~~~--~~~~~~~~~~~~~ 64 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD-----------D-GRVVGSI-DESDLL--DALIEG--KAKFSLPVREVMG 64 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee-----------C-CeeEEEE-eHHHHH--HHHhcc--ccccCcCHHHHhc
Confidence 345788899999999999999999999986 3 5566676 555521 111111 0111346888998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++++++++.++.+.|.+ . ..+||++++|+++|+||.+|+.+
T Consensus 65 ~--~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 65 E--PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred C--CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 8 89999999999999999988 3 34788888899999999999875
No 148
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.83 E-value=1.5e-08 Score=91.01 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=88.2
Q ss_pred ccCCceeeeecccch-hhhhhhhhhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEE
Q 028558 51 TSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV 129 (207)
Q Consensus 51 ~~~~~~~~~~~s~~d-~~~~~~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lv 129 (207)
+....+.++. .... ......+ ..+++.++|.+ +++++.+++++.++++.|.+++++.+||+| +++++
T Consensus 64 A~~GGigvIh-~n~~i~~qae~v--------~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklv 131 (475)
T TIGR01303 64 ARRGGIVILP-QDLPIPAVKQTV--------AFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPV 131 (475)
T ss_pred HHCCCEEEEe-CCCCHHHHHHHH--------hhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEE
Confidence 5555666665 4444 2222222 23467789998 899999999999999999999999999998 47999
Q ss_pred EEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 130 GLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 130 GiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
|+||.+|+.... ...++.++|+++++++++++++.+++++|.+++
T Consensus 132 GIVT~rDL~~~~---------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~ 176 (475)
T TIGR01303 132 GLVTDSDLLGVD---------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAP 176 (475)
T ss_pred EEEEHHHhhcCC---------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcC
Confidence 999999986420 234689999999999999999999999998764
No 149
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.83 E-value=9.1e-09 Score=92.16 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=91.2
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC---CceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS---DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~---~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~ 87 (207)
.++++.++.+..++.+.+.+++++.++|++ +. .++.+++ +..|.... . ....++++
T Consensus 89 ~~vtl~~~~tv~eal~~m~~~~~s~lpVvd-----------~~~~~~~lvGIV-t~rDL~~~------~---~~~~~V~d 147 (450)
T TIGR01302 89 DPVTISPETTVADVLELMERKGISGIPVVE-----------DGDMTGKLVGII-TKRDIRFV------K---DKGKPVSE 147 (450)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEEe-----------CCCCCCeEEEEE-EHHHHhhh------h---cCCCCHHH
Confidence 567899999999999999999999999996 33 4677888 76663110 0 12347999
Q ss_pred ccc-ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 88 FMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 88 vm~-~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+|+ + +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus 148 vm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 148 VMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred hhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 999 5 799999999999999999999999999999999999999999999865
No 150
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.83 E-value=1.9e-08 Score=71.87 Aligned_cols=76 Identities=34% Similarity=0.416 Sum_probs=64.0
Q ss_pred ECCCCCHHHHHHHHHHcC-----CCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 98 v~~~~~v~ea~~~m~~~~-----~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
+.+++++.++++.|.+++ +..+||+|++|+++|+|+.+++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~------------------------------- 50 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD------------------------------- 50 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence 578899999999998776 47899999889999999999998521
Q ss_pred hhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
...++.++|.++++++.+++++.+++++|.++
T Consensus 51 --~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~ 82 (109)
T cd04606 51 --PDTPVSDIMDTDVISVSADDDQEEVARLFEKY 82 (109)
T ss_pred --CcchHHHHhCCCCeEEcCCCCHHHHHHHHHHc
Confidence 23457788888889999999999999999765
No 151
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.82 E-value=3.6e-08 Score=71.03 Aligned_cols=82 Identities=32% Similarity=0.449 Sum_probs=68.6
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (207)
++.++.+++++.++++.|.+++...+||+|+ +|+++|+++.+|++...
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----------------------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----------------------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-----------------------------
Confidence 5788999999999999999889999999996 68999999999987421
Q ss_pred HhhhcCCcccccccCCCeEecC--CCCHHHHHHHHhhcC
Q 028558 171 LSKTNGKMVGDLMTPAPVVVRE--TTNLEDAARSSHSFF 207 (207)
Q Consensus 171 ~~~~~~~~v~~im~~~~~~v~~--~~~l~e~l~~m~~~g 207 (207)
....++.++|.+.+.++.. ++++.+++++|.+++
T Consensus 54 ---~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 89 (114)
T cd04602 54 ---DSETPLSEVMTPREVLVVAPTGITLEEANEILRESK 89 (114)
T ss_pred ---ccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcC
Confidence 1124588899877788866 999999999998764
No 152
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.82 E-value=3.5e-08 Score=70.01 Aligned_cols=84 Identities=24% Similarity=0.310 Sum_probs=69.5
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++++++++.++++.|.+++.+.+||+++ |+++|+++..|+.+...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~---------------------------~ 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK---------------------------A 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc---------------------------c
Confidence 5788999999999999999999999999997 99999999999997531100 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhh
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHS 205 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~ 205 (207)
....++.++|.++++++++++++.+++++|.+
T Consensus 54 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~ 85 (110)
T cd04609 54 KFSLPVREVMGEPLPTVDPDAPIEELSELLDR 85 (110)
T ss_pred ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh
Confidence 01246778888888999999999999999875
No 153
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.81 E-value=4.3e-08 Score=69.92 Aligned_cols=84 Identities=27% Similarity=0.388 Sum_probs=68.7
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
++.++++++++.++++.|.+++.+.+||++++ |+++|+++..|+.+....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~----------------------------- 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE----------------------------- 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc-----------------------------
Confidence 57889999999999999999999999999987 999999999999875310
Q ss_pred hhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 173 KTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.+++ .++.++.+++++.+++++|.+++
T Consensus 53 ~~~~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~ 86 (111)
T cd04590 53 GEEDLDLRDLL-RPPLFVPESTPLDDLLEEMRKER 86 (111)
T ss_pred CCCcCCHHHHh-cCCeecCCCCcHHHHHHHHHhcC
Confidence 00113455665 46788999999999999998764
No 154
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.80 E-value=1.9e-08 Score=83.80 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=83.7
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+.+++++.+..++.+.+.+.++++++|++ +..++.+++ +..|... .+.. ......+++++|.+
T Consensus 166 ~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd-----------~~g~~~Giv-t~~dl~~--~~~~---~~~~~~~v~~im~~ 228 (268)
T TIGR00393 166 LPLIAPTTSFKDALLEMSEKRLGSAIVCD-----------ENNQLVGVF-TDGDLRR--ALLG---GGSLKSEVRDFMTL 228 (268)
T ss_pred CCcCCCCCcHHHHHHHHhhcCCcEEEEEe-----------CCCCEEEEE-EcHHHHH--HHhc---CCcccCcHHHhCCC
Confidence 56788999999999999989999999996 556677777 7667311 1111 11234579999999
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEe
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt 133 (207)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+|+
T Consensus 229 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 229 --GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred --CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 8999999999999999999999999999998899999985
No 155
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.80 E-value=2.1e-08 Score=73.75 Aligned_cols=90 Identities=24% Similarity=0.405 Sum_probs=67.8
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh-
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS- 172 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 172 (207)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+.... .....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~------------------------~~~~~~ 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPI------------------------KRIQEG 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhh------------------------HHHHHc
Confidence 46889999999999999999999999999988999999999999862100 00000
Q ss_pred --hhcCCcccccccCCCeEe------cCCCCHHHHHHHHhhcC
Q 028558 173 --KTNGKMVGDLMTPAPVVV------RETTNLEDAARSSHSFF 207 (207)
Q Consensus 173 --~~~~~~v~~im~~~~~~v------~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.+++..+ .+++++.++++.|.+++
T Consensus 58 ~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~ 100 (126)
T cd04640 58 GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASG 100 (126)
T ss_pred CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCC
Confidence 012356888997655433 36899999999998764
No 156
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.80 E-value=3.6e-08 Score=71.65 Aligned_cols=96 Identities=24% Similarity=0.286 Sum_probs=71.4
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
+++++++++++.++.+.|.+++++.+||+|+ |+++|+++..++.+.+..... ..+.. ... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~------------~~~~~---~~~-~-~ 63 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLG------------TAGET---EKD-L-A 63 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhc------------cccch---HHH-H-H
Confidence 5788999999999999999999999999996 999999999999875311000 00000 000 0 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++.+++++.++++.|.+++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 97 (122)
T cd04637 64 TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENS 97 (122)
T ss_pred HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcC
Confidence 1123578888889999999999999999997653
No 157
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.79 E-value=5.1e-08 Score=70.64 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=72.3
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..++.+....... .|. . ......
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-------------~~~--~--~~~~~~ 63 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRP-------------LVR--D--RHQERR 63 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhh-------------ccc--c--hhhhhh
Confidence 5788999999999999999999999999996 999999999999875321000 000 0 000001
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|..+++++.+++++.+++++|.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 97 (121)
T cd04633 64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENN 97 (121)
T ss_pred hhccCHHHHccCCceEECCCCcHHHHHHHHHHcC
Confidence 1245678889888999999999999999998754
No 158
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.79 E-value=1.5e-08 Score=76.39 Aligned_cols=111 Identities=20% Similarity=0.338 Sum_probs=83.4
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC-------------
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA------------- 77 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~------------- 77 (207)
++++++++.+..++.+.+.+.+.+.++|++ + ..+.+++ +..|.. +.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd-----------~-~~~~G~v-~~~dl~--~~~~~~~~~~~~~~~~~~~~~ 66 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLD-----------G-GKLVGIV-SESDIL--KLLVTHDPSGNLWLPSPLELI 66 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeE-----------C-CeEEEEe-cHHHHH--HHHHhccCccccccCCcceee
Confidence 356888999999999999999998898886 3 3455555 544410 11100000
Q ss_pred -----------------CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 78 -----------------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 78 -----------------~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
......++.++|.+ ++.++++++++.++++.|.+++.+.+||+++ |+++|+|+.+|++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 67 ELPLREFINWEETKRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred eccchheeehHHHHHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 00123467889988 8999999999999999999999999999996 89999999999874
No 159
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.79 E-value=2.1e-08 Score=71.15 Aligned_cols=103 Identities=22% Similarity=0.298 Sum_probs=79.8
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
+++++++.+..++...+.+.+.+.++|++ +..++.++. +..+.. .. .....+.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~g~v-~~~~l~------~~----~~~~~~~~~~~~ 60 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVK-----------KSGELVGII-TRKDLL------RN----PEEEQLALLMTR 60 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEc-----------CCCcEEEEE-EHHHHH------hc----cccchHHHHhcC
Confidence 56778888888888888888888888886 334555666 444421 11 112347788888
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++.++++++++.++++.|.+++.+.+||++ +|+++|++|.+|+++
T Consensus 61 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 61 --DPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred --CCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 899999999999999999999999999998 479999999999874
No 160
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.79 E-value=1.8e-08 Score=92.88 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=89.2
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
..+++++.+..++.+.+.+++.+.+.|++ ++.+..+++ +..|... .... .......++.++|++
T Consensus 457 ~~~v~~~~tl~ea~~~l~~~~~~~~~VvD-----------~~g~lvGiV-t~~dL~~-~l~~---~~~~~~~~v~dim~~ 520 (574)
T PRK01862 457 QTVVPPTASVADMTRVFLEYPVKYLYVVD-----------DDGRFRGAV-ALKDITS-DLLD---KRDTTDKTAADYAHT 520 (574)
T ss_pred CceeCCCCCHHHHHHHHHhCCCceEEEEc-----------CCCeEEEEE-EHHHHHH-Hhhc---ccccccchHHHhccC
Confidence 45788888999999999999999999996 556677787 6666311 1111 111223578999999
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC--CcEEEEEehhhHHhhh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD 141 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~--g~lvGiVt~~dl~~~~ 141 (207)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+.+
T Consensus 521 --~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 521 --PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred --CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 89999999999999999999999999999876 4899999999999753
No 161
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.78 E-value=4.4e-08 Score=83.07 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=88.0
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
.+++++++.+..++...+.+++.+.+.|++ .+..++.|++ +..|... .... ......+.++|.
T Consensus 78 ~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~----------~~~d~iiGiv-~~kDll~--~~~~----~~~~~~l~~l~r 140 (292)
T PRK15094 78 QMITLKRNQTLDECLDVIIESAHSRFPVIS----------EDKDHIEGIL-MAKDLLP--FMRS----DAEAFSMDKVLR 140 (292)
T ss_pred HEEEEeCCCCHHHHHHHHHhcCCcEEEEec----------CCCCcEEEEE-EHHHHHh--Hhhc----cCCcCCHHHHcC
Confidence 478999999999999999999999999985 1225677777 6666311 1111 011234788897
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ +.++++++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+
T Consensus 141 ~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~i 188 (292)
T PRK15094 141 Q---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 188 (292)
T ss_pred C---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHH
Confidence 7 45899999999999999999999999999889999999999999865
No 162
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.78 E-value=4.9e-08 Score=86.98 Aligned_cols=98 Identities=27% Similarity=0.300 Sum_probs=80.2
Q ss_pred CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEc-CCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd-~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
++++.+|+++|+|+.++.+++.+.++.++.+.+.+++++++||++ +.+.++|+++.+|++.......
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~------------ 269 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ------------ 269 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc------------
Confidence 477889999999999999999999999999999999999999999 5579999999999998531100
Q ss_pred cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
........+ ++++.|++++++.++++.|++.
T Consensus 270 -----------------~~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~ 300 (429)
T COG1253 270 -----------------SDLDLRVLV-RPPLFVPETLSLSDLLEEFREE 300 (429)
T ss_pred -----------------cccchhhcc-cCCeEecCCCcHHHHHHHHHHh
Confidence 001122232 3889999999999999999864
No 163
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.76 E-value=5.3e-08 Score=68.52 Aligned_cols=110 Identities=26% Similarity=0.406 Sum_probs=83.9
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
++.+++..+..++.+.+.+.+...++|++ .+.++.+++ +..|.. +....... .....+.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~G~v-~~~~l~--~~~~~~~~--~~~~~~~~~~~~ 66 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVD-----------DDGRLVGIV-TERDLL--RALAEGGL--DPLVTVGDVMTR 66 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEEC-----------CCCCEEEEE-eHHHHH--HHHHhccC--CccccHHHHhcC
Confidence 45678888889999999888888888886 445667777 655521 11111111 111126678888
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
++..+++++++.++++.|.+.+...+||+|++|+++|+++.+|+.+
T Consensus 67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 67 --DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred --CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 8999999999999999999999999999998899999999999875
No 164
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.74 E-value=1.1e-07 Score=68.43 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=67.6
Q ss_pred CceEECCCCCHHHHHHHHHHcC-CCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHh
Q 028558 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLS 172 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~-~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (207)
++.+++++.++.++++.|..++ .+.+||+| +|+++|+++..|+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~--------------------------- 53 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK--------------------------- 53 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC---------------------------
Confidence 5778999999999999998888 67778877 589999999999987431100
Q ss_pred hhcCCcccccccCCCeEecCC--CCHHHHHHHHhhcC
Q 028558 173 KTNGKMVGDLMTPAPVVVRET--TNLEDAARSSHSFF 207 (207)
Q Consensus 173 ~~~~~~v~~im~~~~~~v~~~--~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++.++ +++.+++++|.+++
T Consensus 54 ~~~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~ 90 (115)
T cd04620 54 DLSDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQ 90 (115)
T ss_pred CccccCHHHhcCCCcEEEecccccCHHHHHHHHHHhC
Confidence 012346788998888889887 78999999998763
No 165
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.74 E-value=8.2e-08 Score=72.38 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=74.7
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCC--CC---CCCCCCCc---ccchhhhHH
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GR---ADNSMFPE---VDSTWKTFN 165 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~--~~---~~~~~~~~---~~~~~~~~~ 165 (207)
+++++++++++.++++.|.+++++.+||+|+ |+++|+++..|+++.+..... .. .....+.. ....|+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE-- 78 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH--
Confidence 6788999999999999999999999999997 999999999999875421110 00 00000000 0011111
Q ss_pred HHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 166 ~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...........++.++|.++++++++++++.+++..|.+.+
T Consensus 79 -~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~ 119 (143)
T cd04634 79 -TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHK 119 (143)
T ss_pred -HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcC
Confidence 11111112345688899889999999999999999997653
No 166
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.73 E-value=6.4e-08 Score=69.18 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=66.3
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (207)
....+++++++.++.+.+.+++.+.+||+|+ +|+++|+|+.+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~----------------------------- 53 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL----------------------------- 53 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH-----------------------------
Confidence 5778899999999999999998889999997 68999999999998642
Q ss_pred HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.+ +|.++++++++++++.+++++|.+++
T Consensus 54 ----~~-----~m~~~~~~v~~~~~l~~~~~~~~~~~ 81 (105)
T cd04591 54 ----KN-----YIDPSPFTVSPRTSLEKVHQLFRKLG 81 (105)
T ss_pred ----HH-----hccCCCceECCCCcHHHHHHHHHHcC
Confidence 01 77778889999999999999998764
No 167
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.72 E-value=3.2e-08 Score=70.78 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=77.3
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc---CCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS---SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~---~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
+..++++.+..++...+.+.+...++|++ . ..+..+++ +..|. ..... ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-----------~~~~~~~~~G~v-~~~dl------~~~~~---------~~ 56 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVD-----------STEESPRLVGYI-LRSQL------VVALK---------NY 56 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEc-----------CCCCCCEEEEEE-eHHHH------HHHHH---------Hh
Confidence 34678888888899888888887787775 3 35566777 55552 11110 17
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
|.+ ++.++++++++.++++.|.+++.+.+||++ +|+++|+||.+|+.+
T Consensus 57 m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 57 IDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred ccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 888 899999999999999999999999999996 789999999999975
No 168
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.72 E-value=1.8e-07 Score=67.09 Aligned_cols=88 Identities=35% Similarity=0.497 Sum_probs=73.3
Q ss_pred ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHH
Q 028558 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNE 166 (207)
Q Consensus 87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (207)
++|.+ ++.++.++.++.++...|.++++..+||++. ++++|++|.+|+.++.....
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~--------------------- 58 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG--------------------- 58 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC---------------------
Confidence 34556 8999999999999999999999999999984 48999999999998642111
Q ss_pred HHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhh
Q 028558 167 VQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHS 205 (207)
Q Consensus 167 ~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~ 205 (207)
....++.++|..+++++.+++++.+++++|.+
T Consensus 59 -------~~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~ 90 (117)
T COG0517 59 -------KRLLPVKEVMTKPVVTVDPDTPLEEALELMVE 90 (117)
T ss_pred -------CccccHHHhccCCcEEECCCCCHHHHHHHHHH
Confidence 01115888998899999999999999999987
No 169
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.71 E-value=4.9e-08 Score=70.53 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=79.2
Q ss_pred cccccCCCCCCcccccccccC-CCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc-CCCCCcccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQ-LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFM 89 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~-~~~~~~~~v~~vm 89 (207)
+.++++..+..++.+.+.+.+ .+.++|++ + ..+.+++ +..|... .+.... .......+++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd-----------~-~~~~G~v-~~~~l~~--~~~~~~~~~~~~~~~v~~~~ 67 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVVD-----------D-GRPVGLI-MREALME--LLSTPYGRALYGKKPVSEVM 67 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEEE-----------C-CeeEEEE-EHHHHHH--HHhchhhHHHHcCCcHHHhc
Confidence 456788888888888887776 78888886 4 5556666 5444210 000000 0001234689999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCC---EeEEEcCCCcEEEEEehhhHHh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~---~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.+ ++.++++++++.++++.|.+++.. ..||++++|+++|+|+..|+++
T Consensus 68 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 68 DP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 98 899999999999999999988754 3468887899999999999875
No 170
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.70 E-value=1.7e-07 Score=65.84 Aligned_cols=86 Identities=41% Similarity=0.568 Sum_probs=69.4
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
++.+++++.++.++.+.|.+++.+.+||++++++++|+++.+|+.+...... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~---------------------------~ 54 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG---------------------------L 54 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc---------------------------C
Confidence 5778999999999999999999999999998899999999999987531100 0
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
.....+.++|..+++++.+++++.+++..|.+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (113)
T cd02205 55 DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEH 87 (113)
T ss_pred CccccHHHHhcCCceecCCCcCHHHHHHHHHHc
Confidence 011125677888899999999999999999765
No 171
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.66 E-value=2.1e-07 Score=82.42 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=89.5
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
.+++++.+.+..++.+.+.++|.+-+.|++ .+..++.|++ +..|.. ..... ....++++|.
T Consensus 202 ~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~----------~~~d~ivGiv-~~kDll------~~~~~--~~~~l~~~~~ 262 (408)
T TIGR03520 202 DIFALDIETSFSEIIPKIIENGYSRIPVYK----------ETIDNITGVL-YIKDLL------PHLNK--KNFDWQSLLR 262 (408)
T ss_pred hEEEEECCCCHHHHHHHHHhCCCCEEEEEc----------CCCCceEEEE-EHHHHH------hHhcc--CCCCHHHHcC
Confidence 478999999999999999999999999995 1345788888 666621 11111 2235778887
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ +.++++++++.++++.|.+++.+..+|+|+.|..+|+||.+|++..+
T Consensus 263 ~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileei 310 (408)
T TIGR03520 263 E---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEI 310 (408)
T ss_pred C---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 6 78999999999999999999999999999889999999999999865
No 172
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.61 E-value=2.8e-07 Score=84.45 Aligned_cols=57 Identities=33% Similarity=0.456 Sum_probs=53.7
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+|+++|++ ++.++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|+.+..
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~ 124 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAY 124 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence 579999999 999999999999999999999999999999889999999999998754
No 173
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.60 E-value=1e-07 Score=69.26 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=51.7
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 579999999 8999999999999999999999999999998899999999999874
No 174
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1.5e-07 Score=83.77 Aligned_cols=91 Identities=35% Similarity=0.403 Sum_probs=81.3
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHH-----cCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCc
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~-----~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~ 156 (207)
.-+++.+|+. ++++++++.|+.+++..+++ ..+..++|+|++++++|+++.++++..
T Consensus 131 e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a---------------- 192 (451)
T COG2239 131 EDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA---------------- 192 (451)
T ss_pred hhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC----------------
Confidence 4579999999 99999999999999999985 357889999999999999999999963
Q ss_pred ccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....+.++|.+.+.++.++++.++++++|.+|.
T Consensus 193 -----------------~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~yd 226 (451)
T COG2239 193 -----------------EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYD 226 (451)
T ss_pred -----------------CcHhHHHHHhcccceeecccCCHHHHHHHHHHhC
Confidence 1456799999999999999999999999999874
No 175
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.45 E-value=5.9e-07 Score=76.57 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=68.9
Q ss_pred cCCceeeeecccchhhhhhhhhhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEE
Q 028558 52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL 131 (207)
Q Consensus 52 ~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGi 131 (207)
+.+.+.+++ +.+|. .......++..+|++ ++.++.+.++++.+.+.|...++..+||+|++.+++|+
T Consensus 229 ~~~kvvGvV-t~rDv----------~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGi 295 (432)
T COG4109 229 RSMKVVGVV-TMRDV----------LDKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGI 295 (432)
T ss_pred ccceEEEEE-Eehhh----------hcCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEE
Confidence 777888888 77772 112445689999999 99999999999999999999999999999999999999
Q ss_pred EehhhHHhhhcc
Q 028558 132 VSDYDLLALDSI 143 (207)
Q Consensus 132 Vt~~dl~~~~~~ 143 (207)
||++|+++.++.
T Consensus 296 itR~dvlk~lq~ 307 (432)
T COG4109 296 ITRQDVLKSLQM 307 (432)
T ss_pred EEHHHHHHHHHH
Confidence 999999987743
No 176
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.42 E-value=6.4e-07 Score=80.20 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=83.4
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.++++++++.+..++.+.|.++++.+++|++ +..++.+++ +..|... .+.. .......++.++|
T Consensus 343 ~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~--~~~~--~~~~~~~~v~~im 406 (454)
T TIGR01137 343 PAPVTVHPTETVGDAIEILREYGFDQLPVVT-----------EAGKVLGSV-TLRELLS--ALFA--GKANPDDAVSKVM 406 (454)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCeEEEEE-EHHHHHH--HHhc--cCCCcCCCHHHhc
Confidence 3577899999999999999989999998886 455677777 6666211 1111 1112234689999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
.+ ++.++++++++.++++.|.+++ .|||+++|+++|+||.+|+++.
T Consensus 407 ~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 407 SK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred CC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence 98 8999999999999999998754 3455557899999999999874
No 177
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.22 E-value=2.3e-06 Score=64.08 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=70.4
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCC--------CCcc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPS--------SGVY 83 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~--------~~~~ 83 (207)
++++.++.+..+|++.+.+++.++++|++ +..++.|++ +..|... .......... .+..
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD-----------~~g~l~Giv-t~~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 69 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVD-----------SDDFLEGIL-TLGDIQR-FLFTNKTTRVQPEDETKQTNTC 69 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEEC-----------CCCeEEEEE-EHHHHHH-HHhhccccccccchhhcccccc
Confidence 46788999999999999999999999996 556667777 6666211 1111111000 0001
Q ss_pred cccccc---------cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC
Q 028558 84 TVGDFM---------TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD 125 (207)
Q Consensus 84 ~v~~vm---------~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~ 125 (207)
.+.++| .. +++++.+++++.++++.|.+++++.+||+|++
T Consensus 70 ~v~~i~~~~~~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 70 LVSSVCTKGISYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred cHHHHhhhhhhhcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 133455 45 78999999999999999999999999999854
No 178
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.22 E-value=2e-06 Score=73.90 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=80.9
Q ss_pred CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
+++.++|+|+|+|++++..++.+++.++..+.+....+.++|+..++ +.++||++.+|+++++...+-
T Consensus 196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----------- 264 (423)
T COG4536 196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----------- 264 (423)
T ss_pred ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-----------
Confidence 57789999999999999999999999999999999999999999643 579999999999997532110
Q ss_pred cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
..+.++..+. .+|..|++++++..-+..|.++
T Consensus 265 ----------------~~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~ 296 (423)
T COG4536 265 ----------------FTKEDILRAA-DEPYFVPEGTPLSDQLVAFQRN 296 (423)
T ss_pred ----------------ccHhHHHHHh-cCCeecCCCCcHHHHHHHHHHh
Confidence 0122233333 4788999999999999999764
No 179
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.20 E-value=5.8e-06 Score=49.08 Aligned_cols=46 Identities=41% Similarity=0.710 Sum_probs=42.1
Q ss_pred ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 95 ~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
+.++.+++++.++++.|.+++.+.+||++++++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 5678999999999999999999999999987899999999999763
No 180
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.12 E-value=4.8e-06 Score=74.35 Aligned_cols=108 Identities=13% Similarity=0.166 Sum_probs=84.1
Q ss_pred cccccccCCCCCCcccccccc-----cCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFA-----LQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT 84 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-----~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~ 84 (207)
+..++++++-+..+|..+.-+ ..+..+-|++ ..+++.|++ |-++. . ....+..
T Consensus 140 ~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD-----------~~~~L~Gvv-sl~~L------l----~a~~~~~ 197 (451)
T COG2239 140 TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD-----------EKGKLLGVV-SLRDL------L----TAEPDEL 197 (451)
T ss_pred eeeEEeccCcCHHHHHHHHHHhcccccccceEEEEC-----------CccceEEEe-eHHHH------h----cCCcHhH
Confidence 445677788777777665552 3355677776 666788887 54442 1 1123457
Q ss_pred ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++++|.+ +++++.++++-+++.+.+.+++.-.+||+|++++++|+||..|++..+
T Consensus 198 i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi 252 (451)
T COG2239 198 LKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred HHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence 9999999 899999999999999999999999999999999999999999998754
No 181
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.07 E-value=7.8e-06 Score=71.78 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=80.7
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccc-cc----
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT-VG---- 86 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~-v~---- 86 (207)
++.+....+.-+|.+.|.+++++++.|++ .+.+..+.. +-.|. ..+.... .......+ ++
T Consensus 239 i~~i~~~~~v~~al~~m~~~~is~lpvV~-----------~~g~~v~~~-s~~Dv--~~l~~~~-~~~~~~~~~l~~~~~ 303 (381)
T KOG1764|consen 239 IASISEDTPVIEALKIMSERRISALPVVD-----------ENGKKVGNY-SRFDV--IHLAREG-TYNNLDLSCLSEALS 303 (381)
T ss_pred heeecCCCcHHHHHHHHHhcCcCcceEEc-----------CCCceecce-ehhhh--hhhhhcC-ccCccchhHHHHHhh
Confidence 55667777788899999999999999996 233333333 44441 0111110 01111111 21
Q ss_pred ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
..+..++.++++.+++++.++++.|..++++++.|+|++|.++|+||..|++..+
T Consensus 304 ~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l 358 (381)
T KOG1764|consen 304 HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYL 358 (381)
T ss_pred hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHH
Confidence 2233344689999999999999999999999999999999999999999999876
No 182
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=2.1e-05 Score=69.62 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=77.4
Q ss_pred ccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccccCC
Q 028558 15 LRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEE 94 (207)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~~~ 94 (207)
..+.....+|...|.+.+.+.+.|++ ...+..+.+ +..+. ..... ....+.+.+.+ .
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~g~~-~~~~~------~~~~~---~~~~~~~~~~~--~ 346 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIE-----------RGNKFVGAV-SIDSL------KTALT---QQQGLDAALID--A 346 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEc-----------CCCcEEEEE-eHHHH------Hhhhh---cCCchhhhhcc--C
Confidence 33455666777788888898998886 555666666 43332 11000 11247778887 8
Q ss_pred ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 95 ~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
..++.+++++.+++..+..+... +||+|++|+++|+|+..++++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~ 392 (400)
T PRK10070 347 PLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRAL 392 (400)
T ss_pred CceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHH
Confidence 89999999999999999997766 99999999999999999999875
No 183
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.98 E-value=2.1e-05 Score=68.73 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=72.8
Q ss_pred CCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccccCCceE
Q 028558 18 PPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHV 97 (207)
Q Consensus 18 ~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~~~~~~ 97 (207)
+.+..++...+...+...+.+++ ++.+..+.+ +..+. ..... ....+.+.|.+ ...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~g~~-~~~~~------~~~~~---~~~~~~~~~~~--~~~~ 314 (363)
T TIGR01186 258 DKGPRSALQLMRDERVDSLYVVD-----------RQNKLVGVV-DVESI------KQARK---KAQGLQDVLID--DIYT 314 (363)
T ss_pred CCCHHHHHHHHHhcCCceEEEEc-----------CCCCEEEEE-eHHHH------HHHhh---cCCchhhhhcc--CCce
Confidence 33445555666666777777775 555666666 43332 11000 11247788888 8899
Q ss_pred ECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 98 v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+++++++.+++..|.+++.. +||+|++|+++|+||..+++..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 315 VDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL 357 (363)
T ss_pred ECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence 99999999999999999998 99999999999999999999864
No 184
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.88 E-value=1e-05 Score=65.71 Aligned_cols=94 Identities=23% Similarity=0.390 Sum_probs=74.0
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
..++|+++|.|++...+++.+.++.+.+..+.++.+++|||+.+ .+.+.||+..+||++.+...
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~--------------- 129 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD--------------- 129 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC---------------
Confidence 34689999999989999999999999999999999999999964 46899999999999854210
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHh
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSH 204 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~ 204 (207)
.....+.++. +|...|+++..+...++=|.
T Consensus 130 --------------~~~F~i~~lL-RPav~VPESKrvd~lLkeFR 159 (293)
T COG4535 130 --------------AEPFDIKELL-RPAVVVPESKRVDRLLKEFR 159 (293)
T ss_pred --------------cccccHHHhc-ccceecccchhHHHHHHHHH
Confidence 1223455564 56677888877777776654
No 185
>PRK11573 hypothetical protein; Provisional
Probab=97.84 E-value=0.00011 Score=65.26 Aligned_cols=113 Identities=14% Similarity=0.024 Sum_probs=86.3
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
.++.++.+.+..++.+...++|-+-+.|++ .+..++.|++ .-.|... .... ........+.++|.
T Consensus 198 ~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~----------~~~D~IiGiv-~~kDll~--~~~~--~~~~~~~~l~~~~r 262 (413)
T PRK11573 198 EIVGIDINDDWKSILRQLTHSPHGRIVLYR----------DSLDDAISML-RVREAYR--LMTE--KKEFTKENMLRAAD 262 (413)
T ss_pred eEEEEECCCCHHHHHHHHHhCCCceEEEEc----------CCCCceEEEE-EHHHHHH--Hhhc--cCcCCHHHHHhhcc
Confidence 678899999999999999999999999985 1456677887 5566211 1111 11111123445555
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ +..++++.++.++++.|.+++.+-..|+|+-|...|+||..|++..+
T Consensus 263 ~---~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEei 310 (413)
T PRK11573 263 E---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI 310 (413)
T ss_pred C---CeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHH
Confidence 4 78999999999999999999999999999999999999999999865
No 186
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.80 E-value=5e-05 Score=66.16 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=88.0
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
.+.+.|+.+..++.+.-..+|...+.+|.-|. ...++.+++ |.+|.... +.....++++|++
T Consensus 118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~--------~~~KLvG~v-tsrdi~f~---------~~~~~~~~~vmt~ 179 (503)
T KOG2550|consen 118 PIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK--------RGSKLVGII-TSRDIQFL---------EDNSLLVSDVMTK 179 (503)
T ss_pred CcccCCcccchhhhhhcccccccccccccCCc--------ccceeEEEE-ehhhhhhh---------hcccchhhhhccc
Confidence 44677888888888888888888888885222 345677888 88882111 1234568999999
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+.++.+.+.++.++-+++.+++...+||+|++|+++.++++.||.+..
T Consensus 180 --~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 180 --NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred --ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 778999999999999999999999999999999999999999998754
No 187
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.78 E-value=2.5e-05 Score=71.15 Aligned_cols=127 Identities=21% Similarity=0.238 Sum_probs=88.8
Q ss_pred CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-----CcEEEEEehhhHHhhhcccCCCCC--CC
Q 028558 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALDSISGSGRA--DN 151 (207)
Q Consensus 79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-----g~lvGiVt~~dl~~~~~~~~~~~~--~~ 151 (207)
.++.++++++|++ ++++++.-+.+....+.++.+.++.|||+|+. +++.|+|-++.++..+...-.... ..
T Consensus 578 ~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 578 YMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred HhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 4567789999999 99999999999999999999999999999853 578999999999876533211100 01
Q ss_pred CCCCc-ccchhhh-------HHHHHHHHhh-hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 152 SMFPE-VDSTWKT-------FNEVQKLLSK-TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 152 ~~~~~-~~~~~~~-------~~~~~~~~~~-~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
+-.+. ....+.+ .+++.....+ ..-.++..+|++.|.+|++++++..+..+|..-|
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lG 720 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLG 720 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhc
Confidence 11110 0111111 1111111111 2345678899999999999999999999998765
No 188
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.72 E-value=0.00047 Score=61.59 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=84.4
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
..++.++.+.+..++.+.+.+++-+-+.|++ | +..++.|++ ...|. ................+
T Consensus 216 ~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~---------~~D~iiGiv-~~Kdl------l~~~~~~~~~~~~~~~~ 278 (429)
T COG1253 216 TDIVALDLTDTVEELIELILESGHSRIPVYD-G---------DLDNIIGIV-HVKDL------LRALLDGQSDLDLRVLV 278 (429)
T ss_pred ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-C---------CCCcEEEEE-EHHHH------HHHHhcCccccchhhcc
Confidence 4577888888999999999999999999996 2 566777777 55552 11111110011122222
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
. ++..++++.++.++++.|++++.+...|+|+-|.+.|+||..|++...
T Consensus 279 ~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeI 327 (429)
T COG1253 279 R---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEI 327 (429)
T ss_pred c---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHH
Confidence 2 489999999999999999999999999999999999999999999865
No 189
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.63 E-value=7.7e-05 Score=65.01 Aligned_cols=81 Identities=33% Similarity=0.480 Sum_probs=70.0
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (207)
+++.+.|+.++.++++....+++..+||.++ +++++|+||.+|+-..
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~------------------------------ 166 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL------------------------------ 166 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh------------------------------
Confidence 5788999999999999999999999999973 3689999999998752
Q ss_pred HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
+.....+.++|++.+.+.+++.+++++-+++.++
T Consensus 167 --~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~ 200 (503)
T KOG2550|consen 167 --EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKI 200 (503)
T ss_pred --hcccchhhhhcccccccccccccHHHHHHHHHhh
Confidence 1245678999998889999999999999998764
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.0013 Score=58.22 Aligned_cols=93 Identities=22% Similarity=0.180 Sum_probs=71.9
Q ss_pred cccccccccccCC-ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 82 ~~~v~~vm~~~~~-~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
..++.++|.+... .+...++....+++..|..++.+.++|+|++++++|+|+.+++.+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------ 334 (400)
T PRK10070 273 VFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT------------------ 334 (400)
T ss_pred ccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh------------------
Confidence 3567788855111 123446778999999999999999999999999999999999976421
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
....+.+.+.+...++.+++++.+++..+.+.
T Consensus 335 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (400)
T PRK10070 335 --------------QQQGLDAALIDAPLAVDAQTPLSELLSHVGQA 366 (400)
T ss_pred --------------cCCchhhhhccCCceeCCCCCHHHHHHHHHhC
Confidence 12346666777788999999999999998754
No 191
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.20 E-value=0.0027 Score=55.54 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=67.1
Q ss_pred CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 028558 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSK 173 (207)
Q Consensus 94 ~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (207)
......++.+..++++.|...+...+.|+|+++++.|.|+.+++.....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------------------- 299 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK------------------------------- 299 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh-------------------------------
Confidence 3455677888999999999999999999999999999999999876321
Q ss_pred hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 174 TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 174 ~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....+.+.+.+...++.+++++.+++..|.+++
T Consensus 300 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (363)
T TIGR01186 300 -KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKAG 332 (363)
T ss_pred -cCCchhhhhccCCceECCCCcHHHHHHHHHhCC
Confidence 123466777777889999999999999998754
No 192
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.15 E-value=0.0019 Score=56.91 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=99.7
Q ss_pred ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccch-hhhhhhhhhccC-CCCCccccccccc
Q 028558 13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAV-FASGTLTANSAA-PSSGVYTVGDFMT 90 (207)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d-~~~~~~~~~~~~-~~~~~~~v~~vm~ 90 (207)
+-+.|...+.++...+++.++.-+.|.+.. ...+..+. |.+- ....+.-...+. ...-..++.+.-.
T Consensus 165 ~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----------~~~v~~il-t~~rIl~~l~~~~~~~~~~~~l~~s~~dl~i 233 (381)
T KOG1764|consen 165 VSISPESSLLDAVLLLIKSRIHRVPVIDPE----------TGEVLYIL-TQRRILKFLWLNGRLLPLPSLLSKSLSDLGI 233 (381)
T ss_pred eeecCcHHHHHHHHHHHhCCccceeeeccc----------ccceeeeh-hHHHHHHHHHHhhcccccHHHhhCCHHHhCc
Confidence 677788888899999999999999988511 11122222 2111 101111111110 0111223333321
Q ss_pred ccC-CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHH
Q 028558 91 TKE-ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQK 169 (207)
Q Consensus 91 ~~~-~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (207)
..- .+..+..++++.+|++.|...+++.+||+|..|+.+|+++..|+............ .+.. +..
T Consensus 234 g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~----------~~~~---l~~ 300 (381)
T KOG1764|consen 234 GTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNL----------DLSC---LSE 300 (381)
T ss_pred chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCcc----------chhH---HHH
Confidence 111 48899999999999999999999999999999999999999999876533222110 0100 011
Q ss_pred HHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 170 LLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 170 ~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
+. .....-..+++++.++++|.+++..|..+
T Consensus 301 ~~------~~~~~~~~~vvtc~~~ssL~~vi~~lv~~ 331 (381)
T KOG1764|consen 301 AL------SHRPIRFEGVVTCRPTSTLAEVIDKLVAH 331 (381)
T ss_pred Hh------hhcccccCccEEEeecchHHHHHHHHHhc
Confidence 11 11111123479999999999999998764
No 193
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0055 Score=56.33 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=50.4
Q ss_pred cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
....+|.+ .+.++++++++..+..+++.-+.+|+.|+++..+.+|++|++|+.+
T Consensus 691 Dl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 691 DLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLAR 744 (762)
T ss_pred ccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhh
Confidence 45678999 8999999999999999999999999999998889999999999985
No 194
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=95.54 E-value=0.0017 Score=46.55 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=35.1
Q ss_pred CcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhh
Q 028558 22 RTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTA 73 (207)
Q Consensus 22 ~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~ 73 (207)
.++...|++.+++|+|+|+ |..+.+.+ .+++..++++. +++| +.+.+.+.
T Consensus 51 ~di~~~a~~~~i~~iIltg-~~~~~~~v~~la~~~~i~vi~-t~~dtf~ta~~i~ 103 (105)
T PF07085_consen 51 EDIQLAAIEAGIACIILTG-GLEPSEEVLELAKELGIPVIS-TPYDTFETARLIY 103 (105)
T ss_dssp HHHHHHHCCTTECEEEEET-T----HHHHHHHHHHT-EEEE--SS-HHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeC-CCCCCHHHHHHHHHCCCEEEE-ECCCHHHHHHHHh
Confidence 3445599999999999998 88888888 67888899999 9999 76766654
No 195
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.048 Score=44.75 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=50.5
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
...+.++..| .+.++++-.+...++-++.++.+...|+|+=|.+-|.||..|++...
T Consensus 132 ~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqI 188 (293)
T COG4535 132 PFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQI 188 (293)
T ss_pred cccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHH
Confidence 3467777776 78899999999999999999999999999989999999999999864
No 196
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.11 Score=48.00 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=72.8
Q ss_pred cccccccC---CceEECCC-CCHHHHHHHHHHcCCCEeEEEc--CCCcEEEEEehhhHHhhhcc-----cCCCCCCCCCC
Q 028558 86 GDFMTTKE---ELHVVKPT-TTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSI-----SGSGRADNSMF 154 (207)
Q Consensus 86 ~~vm~~~~---~~~~v~~~-~~v~ea~~~m~~~~~~~lpVvd--~~g~lvGiVt~~dl~~~~~~-----~~~~~~~~~~~ 154 (207)
.++|.+.+ .+.+++.+ +++++....|.++.++.+||+= +..+++|+|.++|+....-. ++....+..+.
T Consensus 546 ~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~ 625 (696)
T KOG0475|consen 546 IPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFN 625 (696)
T ss_pred hhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccC
Confidence 45555532 25566554 8999999999999999999882 34689999999999754310 11100000000
Q ss_pred CcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...++. .........+.++|...|+++...++++.++.+|++.|
T Consensus 626 ~~~~~~---------~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg 669 (696)
T KOG0475|consen 626 DPSPSA---------VAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLG 669 (696)
T ss_pred CCCccc---------cCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhC
Confidence 000000 00011234578899999999999999999999998765
No 197
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=94.98 E-value=0.018 Score=35.81 Aligned_cols=29 Identities=38% Similarity=0.548 Sum_probs=26.0
Q ss_pred ccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 179 VGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 179 v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
++++|+++++++++++++.++++.|.+++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~ 29 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNG 29 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHT
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcC
Confidence 45789999999999999999999998864
No 198
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=94.85 E-value=0.23 Score=43.37 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=50.5
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+-.+++.-..++..++..+++.+-+..|.+++-+.-.|||+=|.+.|+||..|++...
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI 323 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI 323 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHH
Confidence 34455665544689999999999999999999999999999999999999999999754
No 199
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.39 E-value=0.089 Score=46.42 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=44.0
Q ss_pred cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++.+ +.. +..++++++++.+++..+..++.. ++|+|+ |+++|+|+..+++..+
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence 3555 555 688999999999999998887654 888885 9999999999999754
No 200
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.97 E-value=0.27 Score=42.40 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=43.3
Q ss_pred cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+.+ .+.++.+++.+.+.+..+.+... .++|+|++|+++|++++..++.++
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHH
Confidence 4555 68889999999999988877655 689999999999999999999864
No 201
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=92.08 E-value=0.16 Score=47.97 Aligned_cols=59 Identities=27% Similarity=0.352 Sum_probs=52.3
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC--CcEEEEEehhhHHhhh
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD 141 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~--g~lvGiVt~~dl~~~~ 141 (207)
..+.|+++|.+ ++.++..+.|..|..+.+..+..+.+|+||+. .-++|.|.++.|...+
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 45689999999 99999999999999999988779999999843 4689999999998765
No 202
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.11 E-value=0.45 Score=39.86 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=50.7
Q ss_pred ccchhhhhhhhhhc-c-CCCCCcccccccccccC--CceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhH
Q 028558 62 SSAVFASGTLTANS-A-APSSGVYTVGDFMTTKE--ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137 (207)
Q Consensus 62 s~~d~~~~~~~~~~-~-~~~~~~~~v~~vm~~~~--~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl 137 (207)
.|.+..+...+..+ . .+.....++.+.|.+.. +--.+.....-.+++..+...+...+||+|++|+++|.||..++
T Consensus 226 ~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l 305 (309)
T COG1125 226 NPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADL 305 (309)
T ss_pred CccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHH
Confidence 55552244444332 1 12234556777776621 11123334555678888888999999999999999999999999
Q ss_pred Hh
Q 028558 138 LA 139 (207)
Q Consensus 138 ~~ 139 (207)
+.
T Consensus 306 ~~ 307 (309)
T COG1125 306 LD 307 (309)
T ss_pred hh
Confidence 75
No 203
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.56 E-value=0.68 Score=43.03 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=49.8
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
....+++|.. .+.++....+..-+.+++++-+.+...|.. +|++.|+||.+|+++.
T Consensus 638 ~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 638 RLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRH 693 (696)
T ss_pred CcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHh
Confidence 3456788888 889999999999999999999999998876 7999999999999974
No 204
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=82.76 E-value=2.2 Score=40.63 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=47.2
Q ss_pred cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (207)
Q Consensus 84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~ 142 (207)
..+++-... .+..+-+.+++.++-.++.--+.++.+|++ -|+++|+|..++|.+++.
T Consensus 802 d~~~~~IDp-aPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie 858 (931)
T KOG0476|consen 802 DLDECAIDP-APFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIE 858 (931)
T ss_pred chhhCCCCC-CceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHH
Confidence 344553331 577888999999999999999999999998 599999999999998763
No 205
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=80.31 E-value=1.3 Score=40.44 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=66.0
Q ss_pred CCcccccccccccCCceEECCCCCHH-HHHHHHHHcCCCEeEEEcCCC--cEEEEEehhhHHhhhcccCCCCCCCCCCCc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVD-EALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~-ea~~~m~~~~~~~lpVvd~~g--~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~ 156 (207)
.....++++|++-+++..+..+..+. +......+++++++||.+.+. .+.|++....+ +..... .
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~-~~~~~~-------~---- 268 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL-RLLQVE-------V---- 268 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh-hhhccc-------c----
Confidence 34557899999988888888888776 666677899999999998542 23332222222 211000 0
Q ss_pred ccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhh
Q 028558 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHS 205 (207)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~ 205 (207)
.....++...+..+...++.++++.+.++.|++
T Consensus 269 ----------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~ 301 (498)
T KOG2118|consen 269 ----------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQK 301 (498)
T ss_pred ----------------ccccccchhhhccccccCCCcccHHHHHHHHhh
Confidence 113456677777788889999999988888764
No 206
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=79.54 E-value=4.2 Score=35.95 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=55.1
Q ss_pred CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
..+.++++++|.+ .......+ .. .+++. ++...++|+|. |+++..+...+..
T Consensus 270 ~~~~l~a~~~m~~--~~~~~~~~-~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~---------------- 321 (382)
T TIGR03415 270 PLNVLTARSLMRP--LTDLEHVD-GG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQA---------------- 321 (382)
T ss_pred cccceeHHHHhcc--cccccccC-cc-hhhhh---cccceeEeecc-----ceecccchHhHhh----------------
Confidence 3566789999966 33333332 22 34443 78888999984 8888877654320
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
+ .....+.+ +.....++++++++.+++..+.+.
T Consensus 322 -----------~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 354 (382)
T TIGR03415 322 -----------W---AAEQEVES-LEAAPTVINPDTLMRDVLAARHRT 354 (382)
T ss_pred -----------c---ccccchhh-hcccCcccCCCCcHHHHHHHHhcC
Confidence 0 01224555 456778899999999999987664
No 207
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=79.03 E-value=1.9 Score=30.66 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.4
Q ss_pred CcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 177 KMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 177 ~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.++.++|.+++.++++++++.+++++|.+++
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~ 88 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHN 88 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcC
Confidence 5688999989999999999999999997653
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=76.18 E-value=3.4 Score=35.84 Aligned_cols=78 Identities=26% Similarity=0.220 Sum_probs=53.3
Q ss_pred eeecccch-hhhhhhhhhccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhh
Q 028558 58 ALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136 (207)
Q Consensus 58 ~~~~s~~d-~~~~~~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~d 136 (207)
++. +|.+ + +...+.. . .....+++.++|.+.+....-.+...-..++..+.......+.+++.+++.+|+|+..+
T Consensus 252 Il~-~PAndY-V~~Fv~~-v-~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~ 327 (386)
T COG4175 252 ILL-NPANDY-VRDFVRN-V-DRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDS 327 (386)
T ss_pred HHc-CccHHH-HHHHHhc-C-ChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccc
Confidence 344 6777 4 3333332 2 13456789999996323333344455567888888888888888888888999999999
Q ss_pred HHh
Q 028558 137 LLA 139 (207)
Q Consensus 137 l~~ 139 (207)
+..
T Consensus 328 ~~~ 330 (386)
T COG4175 328 LVK 330 (386)
T ss_pred hhc
Confidence 875
No 209
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=70.73 E-value=1.5 Score=41.77 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=41.9
Q ss_pred ccccccc-cccCCCCCCccccccccc-----CCCEEEeeCCCCcccccc--cc---cCCceeeeecccch-hhhhhhhhh
Q 028558 7 PHSISVA-RLRAPPAGRTSGRTSFAL-----QLPCLLLSRPGCRVFSVL--AT---SSDRVSALRRSSAV-FASGTLTAN 74 (207)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~~~~-----~v~~livt~~g~~~~~~~--~~---~~~~~~~~~~s~~d-~~~~~~~~~ 74 (207)
++++-++ +.|.+.+. .+++. +++|||+|+ |..+.+.+ .. .+.+++++. +++| +.+++.+.+
T Consensus 245 ~~~lVIt~gdR~Di~l-----~al~~~~~~~~~a~lIlTg-g~~~~~~v~~l~~~a~~~~ipVl~-t~~dT~~ta~~i~~ 317 (684)
T PRK05632 245 PGSLVVTPGDRSDVIL-----AALLAAMNGPPIAGLLLTG-GYEPDPRIAKLCEGAFETGLPVLS-VDTNTYQTALRLQS 317 (684)
T ss_pred CCcEEEeCCChHHHHH-----HHHHhcccCCCceEEEEcC-CCCCCHHHHHHHhhcccCCCCEEE-ecCCHHHHHHHHHH
Confidence 3344444 44555444 55555 899999999 88877766 33 457899998 9998 777777764
No 210
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=70.41 E-value=1.9 Score=31.92 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=28.6
Q ss_pred CcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch
Q 028558 22 RTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV 65 (207)
Q Consensus 22 ~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d 65 (207)
.+..+.+.+.+.||+|+|. |..+.+.+ .+++++++++. |+..
T Consensus 71 ~~~l~~l~~~~~P~iIvt~-~~~~p~~l~e~a~~~~ipll~-t~~~ 114 (127)
T PF02603_consen 71 KERLEKLFSYNPPCIIVTR-GLEPPPELIELAEKYNIPLLR-TPLS 114 (127)
T ss_dssp CCHHHHHCTTT-S-EEEET-TT---HHHHHHHHHCT--EEE-ESS-
T ss_pred HHHHHHHhCCCCCEEEEEC-cCCCCHHHHHHHHHhCCcEEE-cCCc
Confidence 3566778889999999998 88888888 78899999999 7765
No 211
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=56.13 E-value=25 Score=32.58 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 103 ~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
.++.+.+...+.|-.-++|+. ++++.|+|..+|+.+-
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~ 450 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcch
Confidence 466777777788888899998 7899999999999973
No 212
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=50.91 E-value=27 Score=23.39 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=19.4
Q ss_pred CCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 116 ITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 116 ~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
.+.+-|++++|+.+|+++.++.++.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHH
Confidence 4668889999999999999998874
No 213
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=47.76 E-value=21 Score=25.51 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=14.2
Q ss_pred CEeEEEcCCCcEEEEEehh
Q 028558 117 TGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 117 ~~lpVvd~~g~lvGiVt~~ 135 (207)
-..||.|.+|+++|+|...
T Consensus 92 ~~~PV~d~~g~viG~V~VG 110 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSVG 110 (116)
T ss_dssp EEEEEE-TTS-EEEEEEEE
T ss_pred EEEeeECCCCcEEEEEEEE
Confidence 3589998899999999864
No 214
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=37.77 E-value=26 Score=24.28 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=16.8
Q ss_pred HHcCCCEeEEEcCCCcEEEE
Q 028558 112 VEKRITGFPVIDDDWKLVGL 131 (207)
Q Consensus 112 ~~~~~~~lpVvd~~g~lvGi 131 (207)
...+.+.=||+|.+|+++||
T Consensus 101 ~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 101 TRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp -STTTTTSEEEETTSEEEEE
T ss_pred cCCCcEeHhEECCCCEEEeC
Confidence 44588889999999999997
No 215
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=34.51 E-value=19 Score=30.89 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=35.5
Q ss_pred CcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch
Q 028558 22 RTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV 65 (207)
Q Consensus 22 ~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d 65 (207)
.+..+.+.+.++||+|+|. |....+.+ .+++++++.+. |+..
T Consensus 72 ~~~~~~l~~~~~P~iIvt~-~~~~p~~l~~~a~~~~ipll~-t~~~ 115 (308)
T PRK05428 72 KERLKKLFSLEPPCIIVTR-GLEPPPELLEAAKEAGIPLLR-TPLS 115 (308)
T ss_pred HHHHHHHhCCCCCEEEEEC-cCCCCHHHHHHHHHcCCcEEE-eCCc
Confidence 3455677889999999999 88888888 78999999999 7776
No 216
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=34.16 E-value=50 Score=21.57 Aligned_cols=17 Identities=41% Similarity=0.747 Sum_probs=14.1
Q ss_pred EeEEEcCCCcEEEEEeh
Q 028558 118 GFPVIDDDWKLVGLVSD 134 (207)
Q Consensus 118 ~lpVvd~~g~lvGiVt~ 134 (207)
..||.+++|+++|++..
T Consensus 18 s~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
Confidence 46888888999999875
No 217
>PF14044 NETI: NETI protein
Probab=27.96 E-value=58 Score=20.62 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=16.6
Q ss_pred EecCCCCHHHHHHHHhhcC
Q 028558 189 VVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 189 ~v~~~~~l~e~l~~m~~~g 207 (207)
-|.++.++.++++.|.+.|
T Consensus 3 eV~enETI~~CL~RM~~eG 21 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEG 21 (57)
T ss_pred eccCCCcHHHHHHHHHHcC
Confidence 4778999999999998876
No 218
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=26.01 E-value=44 Score=28.65 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=34.6
Q ss_pred cccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch
Q 028558 23 TSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV 65 (207)
Q Consensus 23 ~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d 65 (207)
+....+.+.+.||+|+|. |....+.+ .+++++++.+. |+..
T Consensus 73 ~~~~~~~~~~~P~iIvt~-~~~~p~~l~~~a~~~~ip~l~-t~~~ 115 (304)
T TIGR00679 73 QIIHNLLTLNPPAIILSK-SFTDPTVLLQVNETYQVPILK-TDLF 115 (304)
T ss_pred HHHHHHhCCCCCEEEEEC-cCCCCHHHHHHHHHhCCcEEE-eCCc
Confidence 455678889999999998 88887777 78999999999 7777
No 219
>PRK10638 glutaredoxin 3; Provisional
Probab=25.97 E-value=1.3e+02 Score=19.66 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=18.2
Q ss_pred HHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 110 ILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 110 ~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+...++...+|++--+|+++|=. .++.+
T Consensus 44 l~~~~g~~~vP~i~~~g~~igG~--~~~~~ 71 (83)
T PRK10638 44 MIKRSGRTTVPQIFIDAQHIGGC--DDLYA 71 (83)
T ss_pred HHHHhCCCCcCEEEECCEEEeCH--HHHHH
Confidence 34556888899996567766533 55554
No 220
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=25.82 E-value=66 Score=22.03 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=11.8
Q ss_pred CCEeEEEcCCCcEEEEE
Q 028558 116 ITGFPVIDDDWKLVGLV 132 (207)
Q Consensus 116 ~~~lpVvd~~g~lvGiV 132 (207)
.+..|+.+++|++.|++
T Consensus 83 ~~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 83 VRYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEEE-TTS-EEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 45678888889999976
No 221
>PHA00673 acetyltransferase domain containing protein
Probab=24.16 E-value=1.8e+02 Score=22.22 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhH
Q 028558 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137 (207)
Q Consensus 102 ~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl 137 (207)
.+-.++++.+.+.....+.|...+|+++|.+...-+
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~ 75 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVT 75 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEe
Confidence 456677888888888888888778999997766544
No 222
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=24.13 E-value=1.5e+02 Score=20.10 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=19.4
Q ss_pred HHHHHHcCCCEeEEEcCCCcEEEEEehh
Q 028558 108 LEILVEKRITGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 108 ~~~m~~~~~~~lpVvd~~g~lvGiVt~~ 135 (207)
++.+.+.+...+.|.+.+|+++|.+..+
T Consensus 35 ~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 35 LEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 3444444445677777789999999975
No 223
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=23.77 E-value=75 Score=24.04 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.4
Q ss_pred cCCCEeEEEcCCCcEEEEEeh
Q 028558 114 KRITGFPVIDDDWKLVGLVSD 134 (207)
Q Consensus 114 ~~~~~lpVvd~~g~lvGiVt~ 134 (207)
.+-+.=|+.|+.|+++|||--
T Consensus 105 ~GDSGRpi~DNsGrVVaIVLG 125 (158)
T PF00944_consen 105 PGDSGRPIFDNSGRVVAIVLG 125 (158)
T ss_dssp TTSTTEEEESTTSBEEEEEEE
T ss_pred CCCCCCccCcCCCCEEEEEec
Confidence 466778999999999999853
No 224
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=20.07 E-value=86 Score=23.60 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=16.3
Q ss_pred CCCEeEEEcCCCcEEEEEehh
Q 028558 115 RITGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 115 ~~~~lpVvd~~g~lvGiVt~~ 135 (207)
....+||.++ |+++|++++.
T Consensus 105 ~~~~~PI~~~-~~vIaVl~~~ 124 (145)
T PF12282_consen 105 RQEVVPIRRN-GRVIAVLIRE 124 (145)
T ss_dssp EEEEEEEEET-TEEEEEEEEE
T ss_pred EEEEEEEEEC-CEEEEEEEEE
Confidence 3578999994 6999999964
Done!