Query 028558
Match_columns 207
No_of_seqs 212 out of 2759
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 22:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kh5_A Protein MJ1225; AMPK, A 99.7 7.1E-16 2.4E-20 126.5 11.6 155 11-207 13-178 (280)
2 3ddj_A CBS domain-containing p 99.7 2.4E-16 8E-21 131.0 8.6 156 11-207 102-257 (296)
3 4esy_A CBS domain containing m 99.6 8.7E-16 3E-20 118.1 11.1 119 82-207 17-135 (170)
4 3t4n_C Nuclear protein SNF4; C 99.6 4.2E-16 1.4E-20 131.0 9.2 158 9-207 121-292 (323)
5 3ddj_A CBS domain-containing p 99.6 3.7E-15 1.3E-19 123.8 11.0 150 11-207 29-186 (296)
6 3kh5_A Protein MJ1225; AMPK, A 99.6 1.4E-15 4.8E-20 124.7 8.3 161 11-207 93-253 (280)
7 2yzq_A Putative uncharacterize 99.6 7.7E-15 2.6E-19 120.7 12.7 147 10-207 9-156 (282)
8 3k6e_A CBS domain protein; str 99.6 2.5E-15 8.4E-20 114.7 8.3 101 84-207 16-116 (156)
9 3sl7_A CBS domain-containing p 99.6 1.9E-15 6.5E-20 116.4 7.7 126 82-207 3-128 (180)
10 2yzq_A Putative uncharacterize 99.6 5.7E-15 1.9E-19 121.4 9.5 178 11-207 69-251 (282)
11 3lv9_A Putative transporter; C 99.6 2.3E-14 7.8E-19 107.4 10.4 97 80-207 20-117 (148)
12 3jtf_A Magnesium and cobalt ef 99.6 1.8E-14 6.1E-19 105.8 9.5 95 81-207 3-98 (129)
13 3lfr_A Putative metal ION tran 99.6 1.3E-14 4.4E-19 107.6 8.6 97 82-207 2-99 (136)
14 4esy_A CBS domain containing m 99.5 9.5E-15 3.2E-19 112.3 7.9 118 9-141 25-160 (170)
15 4gqw_A CBS domain-containing p 99.5 1.5E-14 5.2E-19 108.0 8.1 113 81-207 3-115 (152)
16 3lhh_A CBS domain protein; str 99.5 3.1E-14 1.1E-18 109.8 10.0 97 80-207 39-136 (172)
17 2yzi_A Hypothetical protein PH 99.5 7.1E-14 2.4E-18 103.2 11.2 99 80-207 4-102 (138)
18 3i8n_A Uncharacterized protein 99.5 1.1E-14 3.8E-19 106.9 6.5 98 80-207 3-101 (130)
19 3nqr_A Magnesium and cobalt ef 99.5 3E-14 1E-18 104.2 8.3 96 82-207 2-98 (127)
20 3kpb_A Uncharacterized protein 99.5 2.7E-14 9.2E-19 103.2 7.9 91 84-207 2-92 (122)
21 1vr9_A CBS domain protein/ACT 99.5 3.5E-14 1.2E-18 113.4 8.8 108 10-141 21-128 (213)
22 3k2v_A Putative D-arabinose 5- 99.5 5.2E-14 1.8E-18 105.7 9.2 98 83-207 28-125 (149)
23 2qrd_G Protein C1556.08C; AMPK 99.5 3.6E-14 1.2E-18 119.7 9.1 154 13-207 120-287 (334)
24 3hf7_A Uncharacterized CBS-dom 99.5 2E-14 6.8E-19 105.8 6.5 97 83-207 2-99 (130)
25 3lqn_A CBS domain protein; csg 99.5 7.2E-14 2.5E-18 104.7 9.2 104 82-207 14-117 (150)
26 2ef7_A Hypothetical protein ST 99.5 9.5E-14 3.3E-18 101.8 9.7 95 82-207 3-97 (133)
27 3gby_A Uncharacterized protein 99.5 4.3E-14 1.5E-18 103.4 7.7 96 81-207 3-98 (128)
28 3nqr_A Magnesium and cobalt ef 99.5 7.6E-14 2.6E-18 102.0 8.8 110 11-141 14-124 (127)
29 3l2b_A Probable manganase-depe 99.5 1.7E-14 5.6E-19 117.2 5.6 108 22-140 130-241 (245)
30 2p9m_A Hypothetical protein MJ 99.5 1E-13 3.5E-18 102.2 9.1 98 80-207 5-103 (138)
31 3ctu_A CBS domain protein; str 99.5 6.7E-14 2.3E-18 105.6 8.1 102 83-207 15-116 (156)
32 3fhm_A Uncharacterized protein 99.5 1.3E-13 4.5E-18 105.2 9.8 103 79-207 20-123 (165)
33 3k6e_A CBS domain protein; str 99.5 1.3E-14 4.5E-19 110.6 4.1 114 11-141 26-140 (156)
34 2rih_A Conserved protein with 99.5 2E-13 6.9E-18 101.3 10.4 94 83-207 5-100 (141)
35 2v8q_E 5'-AMP-activated protei 99.5 7.7E-14 2.6E-18 117.6 8.9 156 10-207 126-295 (330)
36 1pbj_A Hypothetical protein; s 99.5 1.1E-13 3.7E-18 100.2 8.1 95 83-207 1-95 (125)
37 3oi8_A Uncharacterized protein 99.5 9.4E-14 3.2E-18 105.3 7.9 97 80-207 35-132 (156)
38 3lfr_A Putative metal ION tran 99.5 1.3E-13 4.6E-18 102.0 8.3 112 10-141 13-125 (136)
39 2rc3_A CBS domain; in SITU pro 99.5 1.7E-13 5.9E-18 100.8 8.9 95 84-207 7-104 (135)
40 2emq_A Hypothetical conserved 99.5 2.2E-13 7.4E-18 102.7 9.4 106 80-207 8-113 (157)
41 3oco_A Hemolysin-like protein 99.5 1.2E-13 3.9E-18 104.3 7.9 96 81-207 18-115 (153)
42 2o16_A Acetoin utilization pro 99.5 1.8E-13 6.2E-18 104.0 9.1 105 82-207 4-108 (160)
43 3jtf_A Magnesium and cobalt ef 99.5 3E-13 1E-17 99.2 9.5 109 10-141 15-124 (129)
44 3i8n_A Uncharacterized protein 99.5 8.7E-14 3E-18 102.1 6.5 111 10-141 16-127 (130)
45 3ocm_A Putative membrane prote 99.5 2.4E-13 8.2E-18 105.3 9.2 96 80-207 33-129 (173)
46 3kxr_A Magnesium transporter, 99.5 3.8E-13 1.3E-17 107.0 10.6 92 81-207 52-146 (205)
47 3fv6_A YQZB protein; CBS domai 99.5 3E-13 1E-17 102.7 9.5 97 81-207 15-113 (159)
48 3lv9_A Putative transporter; C 99.4 2.2E-13 7.6E-18 102.0 8.4 109 11-141 34-143 (148)
49 3t4n_C Nuclear protein SNF4; C 99.4 1.1E-13 3.8E-18 116.1 7.4 166 5-207 35-220 (323)
50 1y5h_A Hypothetical protein RV 99.4 1.3E-13 4.3E-18 101.2 6.7 97 82-207 7-104 (133)
51 3lhh_A CBS domain protein; str 99.4 2.9E-13 1E-17 104.2 8.7 110 10-141 52-162 (172)
52 3gby_A Uncharacterized protein 99.4 1E-13 3.6E-18 101.3 5.7 111 11-141 14-124 (128)
53 1yav_A Hypothetical protein BS 99.4 3E-13 1E-17 102.4 8.2 106 80-207 11-116 (159)
54 1pvm_A Conserved hypothetical 99.4 6.9E-13 2.4E-17 103.0 10.3 97 83-207 9-105 (184)
55 3hf7_A Uncharacterized CBS-dom 99.4 2.5E-13 8.5E-18 99.9 6.9 114 10-141 12-125 (130)
56 3kpb_A Uncharacterized protein 99.4 2.6E-13 8.9E-18 97.9 6.7 109 11-141 10-118 (122)
57 2v8q_E 5'-AMP-activated protei 99.4 5.7E-13 2E-17 112.2 9.1 165 7-207 42-223 (330)
58 4gqw_A CBS domain-containing p 99.4 5.7E-13 1.9E-17 99.4 7.2 117 11-141 16-141 (152)
59 2rih_A Conserved protein with 99.4 6.1E-13 2.1E-17 98.7 7.2 111 11-141 14-126 (141)
60 3lqn_A CBS domain protein; csg 99.4 4.3E-13 1.5E-17 100.4 6.4 115 10-141 25-141 (150)
61 3oco_A Hemolysin-like protein 99.4 5.1E-13 1.7E-17 100.7 6.8 111 10-141 30-141 (153)
62 3oi8_A Uncharacterized protein 99.4 6.9E-13 2.4E-17 100.5 7.4 106 11-138 49-155 (156)
63 4fry_A Putative signal-transdu 99.4 6.3E-13 2.2E-17 100.3 7.1 113 10-141 21-133 (157)
64 3sl7_A CBS domain-containing p 99.4 3.2E-13 1.1E-17 103.8 5.3 117 11-141 15-154 (180)
65 1vr9_A CBS domain protein/ACT 99.4 1.8E-12 6.3E-17 103.3 9.9 90 83-207 13-102 (213)
66 2rc3_A CBS domain; in SITU pro 99.4 6.2E-13 2.1E-17 97.8 6.6 113 10-141 17-129 (135)
67 1o50_A CBS domain-containing p 99.4 1.3E-12 4.4E-17 98.8 8.5 114 78-207 11-125 (157)
68 2uv4_A 5'-AMP-activated protei 99.4 8.3E-13 2.8E-17 99.4 7.4 115 10-141 29-149 (152)
69 1y5h_A Hypothetical protein RV 99.4 5.9E-13 2E-17 97.6 6.4 113 11-141 17-129 (133)
70 3fhm_A Uncharacterized protein 99.4 5.3E-13 1.8E-17 101.8 6.3 114 10-141 35-148 (165)
71 3k2v_A Putative D-arabinose 5- 99.4 6E-13 2E-17 99.8 6.5 110 11-139 39-148 (149)
72 2j9l_A Chloride channel protei 99.4 1.2E-12 4E-17 101.2 8.2 120 80-207 8-138 (185)
73 3kxr_A Magnesium transporter, 99.4 1.1E-12 3.8E-17 104.3 8.1 108 10-141 62-172 (205)
74 2yzi_A Hypothetical protein PH 99.4 1E-12 3.6E-17 96.8 7.3 113 10-141 15-127 (138)
75 3fv6_A YQZB protein; CBS domai 99.4 8.6E-13 2.9E-17 100.1 6.7 113 13-141 27-142 (159)
76 3ctu_A CBS domain protein; str 99.4 5.4E-13 1.8E-17 100.6 5.2 115 10-141 25-140 (156)
77 1pbj_A Hypothetical protein; s 99.3 1.4E-12 4.9E-17 94.2 6.9 111 11-141 10-120 (125)
78 3ghd_A A cystathionine beta-sy 99.3 2.5E-12 8.6E-17 85.2 7.3 69 95-190 2-70 (70)
79 2pfi_A Chloride channel protei 99.3 1.8E-12 6.3E-17 98.0 7.5 103 80-207 10-120 (164)
80 4fry_A Putative signal-transdu 99.3 1.9E-12 6.5E-17 97.7 7.5 98 83-207 7-108 (157)
81 1pvm_A Conserved hypothetical 99.3 2E-12 7E-17 100.4 7.7 114 11-141 18-131 (184)
82 2nyc_A Nuclear protein SNF4; b 99.3 2.6E-12 8.8E-17 95.0 7.5 97 83-207 8-113 (144)
83 2j9l_A Chloride channel protei 99.3 2.3E-12 7.9E-17 99.5 7.5 115 11-141 24-163 (185)
84 2o16_A Acetoin utilization pro 99.3 1.9E-12 6.6E-17 98.3 7.0 114 11-141 14-133 (160)
85 2oux_A Magnesium transporter; 99.3 2.5E-12 8.6E-17 107.2 8.2 93 80-207 134-231 (286)
86 2p9m_A Hypothetical protein MJ 99.3 1.8E-12 6.2E-17 95.4 6.5 113 11-141 17-134 (138)
87 2ef7_A Hypothetical protein ST 99.3 2.2E-12 7.5E-17 94.5 6.6 111 11-141 13-123 (133)
88 2nyc_A Nuclear protein SNF4; b 99.3 2.2E-12 7.6E-17 95.4 6.7 117 10-141 19-139 (144)
89 2yvy_A MGTE, Mg2+ transporter 99.3 6.8E-12 2.3E-16 104.0 10.0 91 82-207 134-229 (278)
90 2emq_A Hypothetical conserved 99.3 3.8E-12 1.3E-16 95.8 7.6 114 11-141 22-137 (157)
91 2uv4_A 5'-AMP-activated protei 99.3 7.3E-12 2.5E-16 94.1 8.7 97 81-207 21-123 (152)
92 2d4z_A Chloride channel protei 99.3 9.8E-12 3.3E-16 101.9 9.9 60 80-141 10-71 (250)
93 3pc3_A CG1753, isoform A; CBS, 99.3 4.8E-12 1.6E-16 113.9 8.8 98 81-207 382-481 (527)
94 2qrd_G Protein C1556.08C; AMPK 99.3 4E-12 1.4E-16 107.0 7.7 164 6-207 28-215 (334)
95 2pfi_A Chloride channel protei 99.3 3.6E-12 1.2E-16 96.4 6.5 114 11-141 22-145 (164)
96 3ocm_A Putative membrane prote 99.3 5E-12 1.7E-16 97.8 7.3 109 10-141 46-155 (173)
97 3l2b_A Probable manganase-depe 99.3 8.7E-12 3E-16 101.0 8.4 58 82-141 6-63 (245)
98 1o50_A CBS domain-containing p 99.3 4.8E-12 1.6E-16 95.6 5.5 115 11-141 25-151 (157)
99 1yav_A Hypothetical protein BS 99.2 6.2E-12 2.1E-16 95.1 5.4 114 11-141 25-140 (159)
100 3org_A CMCLC; transporter, tra 99.2 5.4E-12 1.9E-16 115.9 5.8 126 81-207 451-598 (632)
101 2oux_A Magnesium transporter; 99.2 1.3E-11 4.4E-16 102.9 6.7 108 10-141 145-257 (286)
102 2zy9_A Mg2+ transporter MGTE; 99.2 4E-11 1.4E-15 106.7 8.9 92 81-207 153-249 (473)
103 2yvy_A MGTE, Mg2+ transporter 99.2 2.8E-11 9.5E-16 100.2 6.8 107 11-141 144-255 (278)
104 3usb_A Inosine-5'-monophosphat 99.1 1.2E-10 4.1E-15 104.4 9.9 161 2-207 39-206 (511)
105 4fxs_A Inosine-5'-monophosphat 99.1 3.4E-11 1.1E-15 107.7 5.4 161 2-207 15-181 (496)
106 3fio_A A cystathionine beta-sy 99.1 1.9E-10 6.5E-15 75.0 7.3 68 95-189 2-69 (70)
107 3usb_A Inosine-5'-monophosphat 99.1 2.1E-10 7.3E-15 102.8 9.9 111 11-143 122-234 (511)
108 1me8_A Inosine-5'-monophosphat 99.1 2.6E-11 8.7E-16 108.7 1.8 112 11-142 106-220 (503)
109 2d4z_A Chloride channel protei 99.0 3.5E-10 1.2E-14 92.6 7.6 52 87-141 193-244 (250)
110 4af0_A Inosine-5'-monophosphat 99.0 4.1E-11 1.4E-15 106.5 0.9 111 12-143 148-258 (556)
111 4avf_A Inosine-5'-monophosphat 99.0 6.8E-11 2.3E-15 105.6 2.1 160 2-207 14-179 (490)
112 3org_A CMCLC; transporter, tra 99.0 4.4E-10 1.5E-14 103.2 6.8 116 10-140 463-622 (632)
113 2zy9_A Mg2+ transporter MGTE; 99.0 2.5E-10 8.7E-15 101.5 4.5 107 11-141 164-275 (473)
114 4fxs_A Inosine-5'-monophosphat 99.0 1E-10 3.6E-15 104.5 1.8 112 10-142 97-208 (496)
115 1zfj_A Inosine monophosphate d 99.0 1.7E-09 5.8E-14 96.4 9.0 90 84-207 91-183 (491)
116 3pc3_A CG1753, isoform A; CBS, 98.9 5.2E-10 1.8E-14 100.6 4.9 113 10-141 392-509 (527)
117 1me8_A Inosine-5'-monophosphat 98.9 2.7E-10 9.2E-15 102.0 2.8 89 86-207 99-193 (503)
118 1vrd_A Inosine-5'-monophosphat 98.9 3.6E-10 1.2E-14 100.9 3.5 90 84-207 96-187 (494)
119 4avf_A Inosine-5'-monophosphat 98.9 1.4E-10 4.8E-15 103.5 0.0 111 11-143 97-207 (490)
120 1vrd_A Inosine-5'-monophosphat 98.9 2.2E-10 7.6E-15 102.2 0.1 112 11-143 104-215 (494)
121 4af0_A Inosine-5'-monophosphat 98.9 6.4E-10 2.2E-14 99.0 2.6 86 86-206 141-229 (556)
122 1jcn_A Inosine monophosphate d 98.8 1.7E-09 5.8E-14 97.0 2.4 113 11-142 117-232 (514)
123 1zfj_A Inosine monophosphate d 98.7 2.7E-08 9.2E-13 88.6 7.6 113 11-143 99-211 (491)
124 1jcn_A Inosine monophosphate d 98.7 1.1E-09 3.8E-14 98.2 -1.8 92 84-207 109-205 (514)
125 2cu0_A Inosine-5'-monophosphat 98.7 6.6E-09 2.3E-13 92.6 3.1 85 85-206 95-179 (486)
126 2cu0_A Inosine-5'-monophosphat 98.6 5.6E-09 1.9E-13 93.1 0.0 106 10-141 101-206 (486)
127 3ghd_A A cystathionine beta-sy 98.3 7.7E-08 2.6E-12 63.3 0.7 69 12-98 2-70 (70)
128 3fio_A A cystathionine beta-sy 97.0 0.00013 4.6E-09 46.5 0.7 69 11-97 1-69 (70)
129 2ioj_A Hypothetical protein AF 93.1 0.01 3.4E-07 43.5 -1.3 47 27-75 68-118 (139)
130 1svj_A Potassium-transporting 54.2 11 0.00037 27.8 3.4 35 104-139 121-155 (156)
131 1tif_A IF3-N, translation init 51.8 20 0.00068 23.3 4.0 25 116-140 13-37 (78)
132 1p0z_A Sensor kinase CITA; tra 36.4 26 0.0009 24.2 3.0 21 119-139 106-126 (131)
133 3by8_A Sensor protein DCUS; hi 35.4 27 0.00092 24.7 2.9 22 118-139 110-131 (142)
134 1knx_A Probable HPR(Ser) kinas 33.0 21 0.00073 29.4 2.3 41 23-65 74-116 (312)
135 3tjo_A Serine protease HTRA1; 31.2 27 0.00093 27.0 2.5 21 115-135 187-207 (231)
136 3k2t_A LMO2511 protein; lister 30.6 91 0.0031 18.8 4.4 35 100-134 11-45 (57)
137 3fan_A Non-structural protein; 30.1 30 0.001 26.9 2.5 27 113-139 123-149 (213)
138 2w5e_A Putative serine proteas 30.0 31 0.0011 25.4 2.5 23 112-134 122-144 (163)
139 2qkp_A Uncharacterized protein 29.9 27 0.00094 24.9 2.2 21 117-137 109-130 (151)
140 3lgi_A Protease DEGS; stress-s 28.9 29 0.001 26.8 2.4 22 113-134 172-193 (237)
141 3k6y_A Serine protease, possib 27.1 35 0.0012 26.2 2.5 22 114-135 180-201 (237)
142 3ka5_A Ribosome-associated pro 26.9 1.2E+02 0.004 18.9 4.8 36 100-135 11-46 (65)
143 3sti_A Protease DEGQ; serine p 26.6 36 0.0012 26.7 2.5 21 114-134 184-204 (245)
144 2as9_A Serine protease; trypsi 26.3 35 0.0012 25.7 2.3 22 114-135 155-176 (210)
145 2w7s_A Serine protease SPLA; h 25.3 41 0.0014 24.9 2.5 22 114-135 151-172 (200)
146 2vid_A Serine protease SPLB; h 23.4 47 0.0016 24.5 2.5 23 114-136 154-176 (204)
147 3lyv_A Ribosome-associated fac 22.8 1.1E+02 0.0037 19.1 3.7 35 101-135 13-47 (66)
148 1qtf_A Exfoliative toxin B; se 22.1 51 0.0017 25.5 2.6 22 114-135 183-204 (246)
149 1h75_A Glutaredoxin-like prote 20.7 57 0.002 19.8 2.2 45 95-140 28-72 (81)
No 1
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.65 E-value=7.1e-16 Score=126.46 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=123.5
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc-CCceeeeecccchhhhhh-------hhhhccCC---C
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS-SDRVSALRRSSAVFASGT-------LTANSAAP---S 79 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~-~~~~~~~~~s~~d~~~~~-------~~~~~~~~---~ 79 (207)
+++++.++.+..+|.+.|.+++++++.|.+ + ..++.+++ |..|....- .+...... .
T Consensus 13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d-----------~~~~~~~Giv-t~~di~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
T 3kh5_A 13 KIVTVYPTTTIRKALMTMNENKYRRLPVVN-----------AGNNKVVGII-TSMDIVDFMGGGSKYNLIREKHERNFLA 80 (280)
T ss_dssp CCCCBCTTSBHHHHHHHHHHHCCCEEEEEC-----------TTTCBEEEEE-EHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred CcEEECCCCcHHHHHHHHHhCCCcEeeEEE-----------CCCCeEEEEE-EHHHHHHHhcccchhhhhhhccccchhH
Confidence 788999999999999999999999999996 3 56777887 777721110 00100000 0
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
....+++++|++ ++.++++++++.++++.|.+++++++||+|++|+++|++|.+|+++......
T Consensus 81 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------- 144 (280)
T 3kh5_A 81 AINEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKI-------------- 144 (280)
T ss_dssp HTTSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGS--------------
T ss_pred HhhhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcC--------------
Confidence 113589999999 9999999999999999999999999999998899999999999987542100
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++++++++.++++.|.+++
T Consensus 145 --------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~ 178 (280)
T 3kh5_A 145 --------------DENEVIDDYITRDVIVATPGERLKDVARTMVRNG 178 (280)
T ss_dssp --------------CTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHT
T ss_pred --------------CCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcC
Confidence 1234789999999999999999999999998764
No 2
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.65 E-value=2.4e-16 Score=131.02 Aligned_cols=156 Identities=19% Similarity=0.266 Sum_probs=125.1
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++.++.+..+|.+.|.++++++++|++ +..++.+++ +..|.. +.+.. .....+++++|+
T Consensus 102 ~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd-----------~~~~lvGiv-t~~dl~--~~~~~----~~~~~~v~~~m~ 163 (296)
T 3ddj_A 102 NPVTVYNTSDEFTAINIMVTRNFGSLPVVD-----------INDKPVGIV-TEREFL--LLYKD----LDEIFPVKVFMS 163 (296)
T ss_dssp SCCCEETTSCHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHG--GGGGG----SCCCCBHHHHSB
T ss_pred CCEEEcCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEE-eHHHHH--Hhhhc----ccccccHHHhhc
Confidence 677899999999999999999999999997 567788888 887731 11111 123458999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (207)
+ ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.... .+ ..+..
T Consensus 164 ~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~----------------~~---~~~~~- 221 (296)
T 3ddj_A 164 T--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK----------------AV---DKLDP- 221 (296)
T ss_dssp C--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH----------------HH---HHTCT-
T ss_pred C--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH----------------HH---hhcCh-
Confidence 8 89999999999999999999999999999988999999999999975410 00 00000
Q ss_pred HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
......++.++|.++++++++++++.+++++|.+++
T Consensus 222 -~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~ 257 (296)
T 3ddj_A 222 -DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKR 257 (296)
T ss_dssp -HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHT
T ss_pred -hhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcC
Confidence 012457899999999999999999999999998764
No 3
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.65 E-value=8.7e-16 Score=118.14 Aligned_cols=119 Identities=20% Similarity=0.217 Sum_probs=89.8
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
.++|+++|++ +++++++++++.+|++.|.+++++++||+|++|+++|+||.+|+++......... ........
T Consensus 17 ~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~-----~~~~~~~~ 89 (170)
T 4esy_A 17 QVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYE-----ASEILSRA 89 (170)
T ss_dssp TSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHH-----HHHHHTTT
T ss_pred CCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccc-----hhhhhhhc
Confidence 4689999999 9999999999999999999999999999999999999999999997542111000 00000000
Q ss_pred hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
................++.++|+++++++++++++.+++++|.++|
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~ 135 (170)
T 4esy_A 90 IPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHG 135 (170)
T ss_dssp SCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTT
T ss_pred cchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcC
Confidence 0011222333334567899999999999999999999999999875
No 4
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.64 E-value=4.2e-16 Score=131.03 Aligned_cols=158 Identities=14% Similarity=0.182 Sum_probs=122.3
Q ss_pred ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCc-----eeeeecccchhhhhhhhhhccCCCCCcc
Q 028558 9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDR-----VSALRRSSAVFASGTLTANSAAPSSGVY 83 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~-----~~~~~~s~~d~~~~~~~~~~~~~~~~~~ 83 (207)
+.++++++++.+..+|.+.|.++++++++|++ +... +.+++ |..|... .+............
T Consensus 121 ~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd-----------~~~~~~~~~l~Giv-t~~di~~-~l~~~~~~~~~~~~ 187 (323)
T 3t4n_C 121 QLDTASIHPSRPLFEACLKMLESRSGRIPLID-----------QDEETHREIVVSVL-TQYRILK-FVALNCRETHFLKI 187 (323)
T ss_dssp ---CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-----------ECTTTCCEEEEEEE-EHHHHHH-HHHHHCGGGGGCCS
T ss_pred CCCceEeCCCCcHHHHHHHHHhCCeeEEEEEe-----------cCCCCCccceEEEe-cHHHHHH-HHHhcCCchhhhhC
Confidence 45788999999999999999999999999996 3332 77888 8888311 11111000112345
Q ss_pred ccccc---ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 84 TVGDF---MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 84 ~v~~v---m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
+++++ |++ ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++.....
T Consensus 188 ~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~---------------- 249 (323)
T 3t4n_C 188 PIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG---------------- 249 (323)
T ss_dssp BGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTT----------------
T ss_pred cHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhc----------------
Confidence 78999 888 899999999999999999999999999999889999999999999864210
Q ss_pred hhhHHHHHHHHhhhcCCcccccccC------CCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.......++.++|++ +++++++++++.+++++|.+++
T Consensus 250 ----------~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~ 292 (323)
T 3t4n_C 250 ----------IYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 292 (323)
T ss_dssp ----------HHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSC
T ss_pred ----------hhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhC
Confidence 001235678999987 7899999999999999998864
No 5
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.60 E-value=3.7e-15 Score=123.77 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=121.7
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC--------CCCCc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA--------PSSGV 82 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~--------~~~~~ 82 (207)
+++++.++.+..+|.+.|.+++++++.|+ + .++.+++ |..|... .+..... .....
T Consensus 29 ~~~~v~~~~~v~~a~~~m~~~~~~~~~V~------------d-~~l~Giv-T~~Di~~--~~~~~~~~~~~~~~~~~~~~ 92 (296)
T 3ddj_A 29 NPPILSKEDRLGSAFKKINEGGIGRIIVA------------N-EKIEGLL-TTRDLLS--TVESYCKDSCSQGDLYHIST 92 (296)
T ss_dssp SCCEECTTSBHHHHHHHTTGGGCCEEEEE------------S-SSEEEEE-EHHHHHG--GGTTCC---CCHHHHHHHHT
T ss_pred CCcEECCCccHHHHHHHHHHCCCceEEEE------------C-CeEEEEE-eHHHHHH--HhcccccccccchhhHHHhc
Confidence 67899999999999999999999999999 3 5566777 7777311 1111000 00124
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (207)
.+++++|++ +++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++....
T Consensus 93 ~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~------------------- 151 (296)
T 3ddj_A 93 TPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD------------------- 151 (296)
T ss_dssp SBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG-------------------
T ss_pred ccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhc-------------------
Confidence 579999999 99999999999999999999999999999988999999999999975421
Q ss_pred hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 152 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~ 186 (296)
T 3ddj_A 152 ----------LDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRG 186 (296)
T ss_dssp ----------SCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHT
T ss_pred ----------ccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcC
Confidence 11345799999999999999999999999998764
No 6
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.60 E-value=1.4e-15 Score=124.69 Aligned_cols=161 Identities=12% Similarity=0.196 Sum_probs=124.0
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..+|.+.|.++++++++|++ +..++.|++ +..|.. +.+.... ....+++++|+
T Consensus 93 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~--~~~~~~~---~~~~~v~~~m~ 155 (280)
T 3kh5_A 93 NVITLKENADIDEAIETFLTKNVGGAPIVN-----------DENQLISLI-TERDVI--RALLDKI---DENEVIDDYIT 155 (280)
T ss_dssp SCCCEETTCBHHHHHHHHHHTTCSEEEEEC-----------TTCBEEEEE-EHHHHH--HHHGGGS---CTTCBSGGGCB
T ss_pred CCEEECCCCCHHHHHHHHHhCCCCEEEEEc-----------CCCEEEEEE-EHHHHH--HHHhhcC---CCCCCHHHHhC
Confidence 678899999999999999999999999997 567788888 888831 2222221 22347999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHH
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKL 170 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (207)
+ ++.++++++++.++++.|.+++++++||++ +|+++|+||.+|+++...... .|..+.. ..
T Consensus 156 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~Givt~~dl~~~~~~~~--------------~~~~~~~--~~ 216 (280)
T 3kh5_A 156 R--DVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGIITSTDFIKLLGSDW--------------AFNHMQT--GN 216 (280)
T ss_dssp C--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHTSHH--------------HHHHHHS--CC
T ss_pred C--CCeEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHhhhh--------------hhhhhcc--cc
Confidence 8 899999999999999999999999999994 799999999999998641100 0000000 00
Q ss_pred HhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 171 LSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 171 ~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.......++.++|+++++++++++++.+++++|.+++
T Consensus 217 ~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~ 253 (280)
T 3kh5_A 217 VREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTND 253 (280)
T ss_dssp THHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHT
T ss_pred hhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCC
Confidence 0011346789999999999999999999999998764
No 7
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.60 E-value=7.7e-15 Score=120.65 Aligned_cols=147 Identities=15% Similarity=0.132 Sum_probs=105.9
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.++++++++.+..+|.+.+.+++++.+.|++ +..++.+++ +..|... .....+++++|
T Consensus 9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d-----------~~~~~~Giv-~~~dl~~----------~~~~~~v~~~m 66 (282)
T 2yzq_A 9 QNPVTITLPATRNYALELFKKYKVRSFPVVN-----------KEGKLVGII-SVKRILV----------NPDEEQLAMLV 66 (282)
T ss_dssp ESCCCEESSCC------------CCEEEEEC-----------TTCCEEEEE-ESSCC--------------------CCC
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCeEEEEc-----------CCCcEEEEE-EHHHHHh----------hhccCCHHHHc
Confidence 4677899999999999999999999999996 456777888 7777311 01235799999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh-hhcccCCCCCCCCCCCcccchhhhHHHHH
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEVDSTWKTFNEVQ 168 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (207)
.+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+ ......
T Consensus 67 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~----------------------- 121 (282)
T 2yzq_A 67 KR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE----------------------- 121 (282)
T ss_dssp BS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCS-----------------------
T ss_pred CC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccC-----------------------
Confidence 99 8999999999999999999999999999998899999999999997 542100
Q ss_pred HHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 169 KLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 169 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.++++.|.+++
T Consensus 122 ----~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~ 156 (282)
T 2yzq_A 122 ----KYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSN 156 (282)
T ss_dssp ----GGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCS
T ss_pred ----CcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcC
Confidence 01245788999989999999999999999998764
No 8
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.59 E-value=2.5e-15 Score=114.67 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=85.5
Q ss_pred cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhh
Q 028558 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 163 (207)
Q Consensus 84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (207)
+++++|+|++++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++++....+..
T Consensus 16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~---------------- 79 (156)
T 3k6e_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLS---------------- 79 (156)
T ss_dssp TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCC----------------
T ss_pred cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccc----------------
Confidence 6889999988999999999999999999999999999999889999999999998764221110
Q ss_pred HHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.......++.++|.++++++++++++.+++++|.+++
T Consensus 80 -------~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~ 116 (156)
T 3k6e_A 80 -------QEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES 116 (156)
T ss_dssp -------HHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS
T ss_pred -------cccccccCHHHhhcCCceecccccHHHHHHHHHHHcC
Confidence 0012467899999999999999999999999998764
No 9
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.59 E-value=1.9e-15 Score=116.36 Aligned_cols=126 Identities=71% Similarity=1.124 Sum_probs=93.2
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
.++|+++|++..+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+||++.....+........++.....|
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW 82 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence 35799999985568999999999999999999999999999988999999999999864322221111222233344455
Q ss_pred hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
..+.++..........++.++|+++++++++++++.+++++|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~ 128 (180)
T 3sl7_A 83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETK 128 (180)
T ss_dssp CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTST
T ss_pred hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcC
Confidence 5555555555555678899999998999999999999999998764
No 10
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.58 E-value=5.7e-15 Score=121.44 Aligned_cols=178 Identities=16% Similarity=0.205 Sum_probs=122.0
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..+|.+.|.++++++++|++ +..++.|++ |..|... +.+... ......+++++|.
T Consensus 69 ~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Gii-t~~di~~-~~~~~~--~~~~~~~v~~~m~ 133 (282)
T 2yzq_A 69 DVPVVKENDTLKKAAKLMLEYDYRRVVVVD-----------SKGKPVGIL-TVGDIIR-RYFAKS--EKYKGVEIEPYYQ 133 (282)
T ss_dssp CCCEEETTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHH-HTTTTC--SGGGGCBSTTTSB
T ss_pred CCcEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCEEEEEE-EHHHHHH-HHHhcc--CCcccCcHHHHhC
Confidence 367889999999999999999999999996 445677888 7777311 011111 1123457899998
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCC-CCCCCCCc---c-cchhhhHH
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGR-ADNSMFPE---V-DSTWKTFN 165 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~-~~~~~~~~---~-~~~~~~~~ 165 (207)
+ ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|++.......... ...+..+. . ...+..+
T Consensus 134 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (282)
T 2yzq_A 134 R--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLL- 210 (282)
T ss_dssp S--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-------------------------
T ss_pred C--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHH-
Confidence 8 8999999999999999999999999999998899999999999983210000000 00000000 0 0000000
Q ss_pred HHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 166 EVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 166 ~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
+..........++.++|+++++++++++++.+++++|.+++
T Consensus 211 -~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 251 (282)
T 2yzq_A 211 -FEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYS 251 (282)
T ss_dssp ---------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred -HhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcC
Confidence 00000112467899999999999999999999999998764
No 11
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.56 E-value=2.3e-14 Score=107.43 Aligned_cols=97 Identities=15% Similarity=0.254 Sum_probs=84.9
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
+...+|+++|+++.++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++...
T Consensus 20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~---------------- 83 (148)
T 3lv9_A 20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI---------------- 83 (148)
T ss_dssp GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh----------------
Confidence 4567899999986679999999999999999999999999999977 89999999999997531
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++| ++++++++++++.+++++|.+++
T Consensus 84 --------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~ 117 (148)
T 3lv9_A 84 --------------NENKIELEEIL-RDIIYISENLTIDKALERIRKEK 117 (148)
T ss_dssp --------------HHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHT
T ss_pred --------------cCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcC
Confidence 11256899999 88999999999999999998764
No 12
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.55 E-value=1.8e-14 Score=105.76 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=81.5
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
...+|+++|++..++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++...
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~----------------- 65 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML----------------- 65 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence 356899999964478999999999999999999999999999975 89999999999997531
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|. +++++.+++++.+++++|.+++
T Consensus 66 --------------~~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~ 98 (129)
T 3jtf_A 66 --------------EPALDIRSLVR-PAVFIPEVKRLNVLLREFRASR 98 (129)
T ss_dssp --------------CTTSCGGGGCB-CCCEEETTCBHHHHHHHHHTSS
T ss_pred --------------cCCcCHHHHhC-CCeEeCCCCcHHHHHHHHHhcC
Confidence 13457889995 5889999999999999998764
No 13
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.55 E-value=1.3e-14 Score=107.60 Aligned_cols=97 Identities=24% Similarity=0.329 Sum_probs=82.0
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
+.+|+++|++..++.++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.....
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~---------------- 65 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKA---------------- 65 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSS----------------
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhc----------------
Confidence 35799999964478999999999999999999999999999977 7999999999999854210
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|++ ++++.+++++.+++++|.+++
T Consensus 66 ------------~~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~ 99 (136)
T 3lfr_A 66 ------------DGDSDDVKKLLRP-ATFVPESKRLNVLLREFRANH 99 (136)
T ss_dssp ------------SGGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHT
T ss_pred ------------cCCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcC
Confidence 1134678999965 899999999999999998764
No 14
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.55 E-value=9.5e-15 Score=112.30 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=95.3
Q ss_pred ccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhh----------hh----
Q 028558 9 SISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLT----------AN---- 74 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~----------~~---- 74 (207)
+.+++++.++.+..+|.+.|.+++++++.|++ +++++.|++ |..|......- ..
T Consensus 25 ~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd-----------~~g~lvGii-t~~Dll~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T 4esy_A 25 TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVD-----------QNGHLVGII-TESDFLRGSIPFWIYEASEILSRAIPA 92 (170)
T ss_dssp CSCCCCEETTSBHHHHHHHHHHTTCSEEEEEC-----------TTSCEEEEE-EGGGGGGGTCCTTHHHHHHHHTTTSCH
T ss_pred CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEc-----------CCccEEEEE-EHHHHHHHHhhccccchhhhhhhccch
Confidence 35789999999999999999999999999997 566777888 77773111000 00
Q ss_pred ----ccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 75 ----SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 75 ----~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.........+++++|++ +++++.+++++.+++++|.+++++++||+| +|+++|+||.+||++++
T Consensus 93 ~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l 160 (170)
T 4esy_A 93 PEVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL 160 (170)
T ss_dssp HHHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred hhHHhhhccccccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 00001234579999999 999999999999999999999999999998 69999999999999864
No 15
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.54 E-value=1.5e-14 Score=108.04 Aligned_cols=113 Identities=83% Similarity=1.200 Sum_probs=87.4
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
+.++|+++|++..+++++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.... ...
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~--------------~~~ 68 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSG--------------DST 68 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC------------------C
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcc--------------cCc
Confidence 346899999986569999999999999999999999999999988999999999999874311 111
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
|..+.++..........++.++|.++++++++++++.+++++|.+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~ 115 (152)
T 4gqw_A 69 WKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETK 115 (152)
T ss_dssp CHHHHHHHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSS
T ss_pred ccchHHHHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCC
Confidence 22222222222223467899999998999999999999999998764
No 16
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.54 E-value=3.1e-14 Score=109.80 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=82.2
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
+...+|+++|++..+++++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++...
T Consensus 39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~---------------- 102 (172)
T 3lhh_A 39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI---------------- 102 (172)
T ss_dssp ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh----------------
Confidence 5567899999954389999999999999999999999999999977 89999999999997531
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++| ++++++++++++.+++++|.+++
T Consensus 103 --------------~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~ 136 (172)
T 3lhh_A 103 --------------AGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTG 136 (172)
T ss_dssp --------------TTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHT
T ss_pred --------------hcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcC
Confidence 11356799999 89999999999999999998764
No 17
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.53 E-value=7.1e-14 Score=103.19 Aligned_cols=99 Identities=25% Similarity=0.317 Sum_probs=84.3
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
+...+++++|++ ++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++.....+
T Consensus 4 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------- 67 (138)
T 2yzi_A 4 DMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPG-------------- 67 (138)
T ss_dssp CTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC--------------
T ss_pred hhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcC--------------
Confidence 445689999998 9999999999999999999999999999998899999999999974211000
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 68 -------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~ 102 (138)
T 2yzi_A 68 -------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHR 102 (138)
T ss_dssp -------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHT
T ss_pred -------------CcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcC
Confidence 01346799999999999999999999999998764
No 18
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.53 E-value=1.1e-14 Score=106.91 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=80.9
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
+...+|+++|++..+++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++....
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~--------------- 67 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS--------------- 67 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT---------------
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc---------------
Confidence 4456899999974467899999999999999999999999999976 899999999999975311
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++| ++++++++++++.+++++|.+++
T Consensus 68 --------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~ 101 (130)
T 3i8n_A 68 --------------GSGQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHR 101 (130)
T ss_dssp --------------TTTTSBHHHHS-EECCEEETTSCHHHHHHHHHHHT
T ss_pred --------------CCCcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcC
Confidence 11356789999 46889999999999999998764
No 19
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.52 E-value=3e-14 Score=104.21 Aligned_cols=96 Identities=24% Similarity=0.384 Sum_probs=81.3
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
+.+|+++|++..++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++....
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~----------------- 64 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS----------------- 64 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence 35799999973359999999999999999999999999999987 899999999999975411
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|. +++++++++++.+++++|.+++
T Consensus 65 ------------~~~~~~v~~~m~-~~~~v~~~~~l~~a~~~m~~~~ 98 (127)
T 3nqr_A 65 ------------DAEAFSMDKVLR-TAVVVPESKRVDRMLKEFRSQR 98 (127)
T ss_dssp ------------TCCCCCHHHHCB-CCCEEETTCBHHHHHHHHHHTT
T ss_pred ------------cCCCCCHHHHcC-CCeEECCCCcHHHHHHHHHhcC
Confidence 113567899995 4789999999999999998764
No 20
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.52 E-value=2.7e-14 Score=103.19 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=81.8
Q ss_pred cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhh
Q 028558 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 163 (207)
Q Consensus 84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (207)
+|+++|++ ++.++++++++.++++.|.+++++++||+|++|+++|+|+.+|+++...
T Consensus 2 ~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~--------------------- 58 (122)
T 3kpb_A 2 LVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA--------------------- 58 (122)
T ss_dssp BHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH---------------------
T ss_pred chHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH---------------------
Confidence 68999999 9999999999999999999999999999998899999999999997531
Q ss_pred HHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 164 FNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 164 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++++++++.+++++|.+++
T Consensus 59 ----------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 92 (122)
T 3kpb_A 59 ----------QNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYN 92 (122)
T ss_dssp ----------TTCCBGGGTSBSSCCCEETTSBHHHHHHHHHHHT
T ss_pred ----------hcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhC
Confidence 1234799999999999999999999999998754
No 21
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.51 E-value=3.5e-14 Score=113.42 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=93.1
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.+++++.++.+..+|.+.|.++++++++|++ ++.++.+++ +..|... . ....+++++|
T Consensus 21 ~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-----------~~~~l~Giv-t~~dl~~------~----~~~~~v~~im 78 (213)
T 1vr9_A 21 QDFPMVEESATVRECLHRMRQYQTNECIVKD-----------REGHFRGVV-NKEDLLD------L----DLDSSVFNKV 78 (213)
T ss_dssp SCSCEEETTCBHHHHHHHHHHTTSSEEEEEC-----------TTSBEEEEE-EGGGGTT------S----CTTSBSGGGC
T ss_pred CCCeEECCCCcHHHHHHHHHHCCCCEEEEEc-----------CCCEEEEEE-EHHHHHh------h----cCCCcHHHHc
Confidence 4567899999999999999999999999996 566788888 7777311 1 1134799999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++ ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++..
T Consensus 79 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~ 128 (213)
T 1vr9_A 79 SL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEAL 128 (213)
T ss_dssp BC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred cC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence 99 899999999999999999999999999999889999999999999865
No 22
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.51 E-value=5.2e-14 Score=105.69 Aligned_cols=98 Identities=26% Similarity=0.292 Sum_probs=84.9
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (207)
++|+++|++.++++++++++++.++++.|.+++++++||+|++|+++|+||.+|+++......
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----------------- 90 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV----------------- 90 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS-----------------
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC-----------------
Confidence 479999998667899999999999999999999999999998899999999999998642100
Q ss_pred hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 91 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~ 125 (149)
T 3k2v_A 91 ----------DMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRH 125 (149)
T ss_dssp ----------CCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHT
T ss_pred ----------CcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcC
Confidence 01356799999999999999999999999998764
No 23
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.51 E-value=3.6e-14 Score=119.67 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=117.6
Q ss_pred ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-Cc----eeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558 13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DR----VSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87 (207)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~----~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~ 87 (207)
++++++.+..+|.+.|.++++++++|++ +. .. +.+++ +..|... .+............++++
T Consensus 120 ~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~~~~~~Giv-t~~dl~~-~~~~~~~~~~~~~~~v~~ 186 (334)
T 2qrd_G 120 IYVHPMHSLMDACLAMSKSRARRIPLID-----------VDGETGSEMIVSVL-TQYRILK-FISMNCKETAMLRVPLNQ 186 (334)
T ss_dssp CCBCTTSBHHHHHHHHHHSCCSEEEEEE-----------EETTTTEEEEEEEE-EHHHHHH-HHHHHCGGGGGCCCBGGG
T ss_pred eeeCCCCcHHHHHHHHHHCCceEEEEEe-----------CCCCcCccceEEEe-eHHHHHH-HHHhhccchhhhhCcHHH
Confidence 7899999999999999999999999995 22 22 67787 7777211 111110000112346888
Q ss_pred ---cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhH
Q 028558 88 ---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTF 164 (207)
Q Consensus 88 ---vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (207)
+|++ ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.......
T Consensus 187 l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~------------------ 246 (334)
T 2qrd_G 187 MTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY------------------ 246 (334)
T ss_dssp SSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCG------------------
T ss_pred hCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhcccc------------------
Confidence 5888 89999999999999999999999999999988999999999999986421100
Q ss_pred HHHHHHHhhhcCCcccccccC------CCeEecCCCCHHHHHHHHhhcC
Q 028558 165 NEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 165 ~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.+ +++++++++++.+++++|.+++
T Consensus 247 --------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~ 287 (334)
T 2qrd_G 247 --------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSR 287 (334)
T ss_dssp --------GGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSC
T ss_pred --------ccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcC
Confidence 0124568888874 7899999999999999998764
No 24
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.51 E-value=2e-14 Score=105.85 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=80.2
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
++|+++|++..+++++++++++.+|++.|.+++++++||+++ +|+++|+||.+|++++......
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~--------------- 66 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE--------------- 66 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC---------------
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc---------------
Confidence 479999987547999999999999999999999999999975 5899999999999986421000
Q ss_pred hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++| ++++++++++++.+++++|.+++
T Consensus 67 ------------~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~ 99 (130)
T 3hf7_A 67 ------------FTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNK 99 (130)
T ss_dssp ------------CCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHC
T ss_pred ------------cchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcC
Confidence 0123578888 67899999999999999998764
No 25
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.50 E-value=7.2e-14 Score=104.70 Aligned_cols=104 Identities=21% Similarity=0.219 Sum_probs=85.9
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
.++|+++|++..+++++++++++.+|++.|.+++++++||+|++|+++|+||.+||++........ .
T Consensus 14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~----------~--- 80 (150)
T 3lqn_A 14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERI----------E--- 80 (150)
T ss_dssp HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSB----------C---
T ss_pred cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhccc----------c---
Confidence 458999999633699999999999999999999999999999889999999999999865221100 0
Q ss_pred hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.......++.++|.++++++++++++.+++++|.+++
T Consensus 81 ---------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~ 117 (150)
T 3lqn_A 81 ---------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHP 117 (150)
T ss_dssp ---------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCS
T ss_pred ---------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCC
Confidence 0012456899999999999999999999999998764
No 26
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.50 E-value=9.5e-14 Score=101.85 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=82.9
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
..+++++|++ ++.++++++++.++++.|.+++++++||+| +|+++|+||.+|+++......
T Consensus 3 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~---------------- 63 (133)
T 2ef7_A 3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGK---------------- 63 (133)
T ss_dssp CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC----------------
T ss_pred cccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCC----------------
Confidence 4689999999 899999999999999999999999999999 899999999999987532100
Q ss_pred hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++++++++.++++.|.+++
T Consensus 64 ------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 97 (133)
T 2ef7_A 64 ------------SLETKAEEFMTASLITIREDSPITGALALMRQFN 97 (133)
T ss_dssp ------------CTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHT
T ss_pred ------------CcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcC
Confidence 1246799999989999999999999999998764
No 27
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.50 E-value=4.3e-14 Score=103.38 Aligned_cols=96 Identities=19% Similarity=0.097 Sum_probs=83.3
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
..++++++|++ ++.++++++++.++++.|.+++++++||+|+ |+++|+||.+|+.+......
T Consensus 3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~--------------- 64 (128)
T 3gby_A 3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWP--------------- 64 (128)
T ss_dssp TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSC---------------
T ss_pred cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCC---------------
Confidence 35689999999 9999999999999999999999999999997 99999999999997531100
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++++++++.+++++|.+++
T Consensus 65 -------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~ 98 (128)
T 3gby_A 65 -------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAK 98 (128)
T ss_dssp -------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCS
T ss_pred -------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCC
Confidence 1225789999999999999999999999998764
No 28
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.50 E-value=7.6e-14 Score=102.00 Aligned_cols=110 Identities=16% Similarity=0.159 Sum_probs=91.9
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.+++++++.+..+|.+.|.+++.++++|++ ++ +++.|++ +..|... .+. ......+++++|
T Consensus 14 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~~vGiv-t~~dl~~--~~~----~~~~~~~v~~~m 75 (127)
T 3nqr_A 14 QMITLKRNQTLDECLDVIIESAHSRFPVIS-----------EDKDHIEGIL-MAKDLLP--FMR----SDAEAFSMDKVL 75 (127)
T ss_dssp GCCCEETTCCHHHHHHHHHHHCCSEEEEES-----------SSTTCEEEEE-EGGGGGG--GGS----TTCCCCCHHHHC
T ss_pred HeEEEcCCCCHHHHHHHHHhCCCCEEEEEc-----------CCCCcEEEEE-EHHHHHH--HHh----ccCCCCCHHHHc
Confidence 477999999999999999999999999996 44 6788888 7777311 111 122356799999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+ +.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus 76 ~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (127)
T 3nqr_A 76 RT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 124 (127)
T ss_dssp BC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred CC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 65 67899999999999999999999999999889999999999999853
No 29
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.50 E-value=1.7e-14 Score=117.20 Aligned_cols=108 Identities=20% Similarity=0.362 Sum_probs=91.4
Q ss_pred CcccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhhhccCCCCCccccccccc-ccCCceE
Q 028558 22 RTSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANSAAPSSGVYTVGDFMT-TKEELHV 97 (207)
Q Consensus 22 ~~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~~~~~~~~~~~~v~~vm~-~~~~~~~ 97 (207)
.++.+.|+++|++|+++|+ |..+.+.+ .+.++.+.++. +++| +...+.+.... +++++|+ + ++.+
T Consensus 130 ~~~~~~~i~~~~~~liit~-~~~~~~~v~~~a~~~~~~~i~-t~~d~~~~~~~~~~~~-------~v~~im~~~--~~~~ 198 (245)
T 3l2b_A 130 AEIQAELIELKVSLLIVTG-GHTPSKEIIELAKKNNITVIT-TPHDSFTASRLIVQSL-------PVDYVMTKD--NLVA 198 (245)
T ss_dssp HHHHHHHHHTTCSEEEECT-TCCCCHHHHHHHHHHTCEEEE-CSSCHHHHHHHGGGGS-------BHHHHSBCT--TCCC
T ss_pred HHHHHHHHHcCCCEEEECC-CCCCCHHHHHHHHHcCCeEEE-eCCChHHHHHHHhcCC-------ceeeEecCC--ccEE
Confidence 5677899999999999998 77777777 67788899999 9999 66666665544 6999999 6 8999
Q ss_pred ECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 98 v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
+++++++.++++.|.+++++++||+|++|+++|+||.+|+++.
T Consensus 199 ~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~ 241 (245)
T 3l2b_A 199 VSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST 241 (245)
T ss_dssp EETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred ECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence 9999999999999999999999999988999999999999874
No 30
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.49 E-value=1e-13 Score=102.21 Aligned_cols=98 Identities=28% Similarity=0.361 Sum_probs=84.0
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhH-HhhhcccCCCCCCCCCCCccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl-~~~~~~~~~~~~~~~~~~~~~ 158 (207)
+...+++++|++ ++.++++++++.++++.|.+++++++||+|++|+++|+|+.+|+ .+.....
T Consensus 5 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-------------- 68 (138)
T 2p9m_A 5 LKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDK-------------- 68 (138)
T ss_dssp CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTC--------------
T ss_pred cccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhc--------------
Confidence 345689999999 89999999999999999999999999999988999999999999 7653110
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 69 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~ 103 (138)
T 2p9m_A 69 --------------YTLETTIGDVMTKDVITIHEDASILEAIKKMDISG 103 (138)
T ss_dssp --------------CCSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-
T ss_pred --------------ccCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcC
Confidence 01356789999999999999999999999998764
No 31
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.49 E-value=6.7e-14 Score=105.63 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=84.3
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (207)
.+++++|++..++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.......
T Consensus 15 ~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~---------------- 78 (156)
T 3ctu_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL---------------- 78 (156)
T ss_dssp TTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccc----------------
Confidence 3689999965589999999999999999999999999999988999999999999976421110
Q ss_pred hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
........++.++|.++++++++++++.+++++|.+++
T Consensus 79 -------~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~ 116 (156)
T 3ctu_A 79 -------SQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES 116 (156)
T ss_dssp -------CHHHHTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS
T ss_pred -------cccccccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC
Confidence 00012367899999999999999999999999998764
No 32
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.49 E-value=1.3e-13 Score=105.24 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=87.4
Q ss_pred CCCccccccccccc-CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 79 SSGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 79 ~~~~~~v~~vm~~~-~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
++..++|+++|++. +++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.+..
T Consensus 20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~-------------- 85 (165)
T 3fhm_A 20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG-------------- 85 (165)
T ss_dssp SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH--------------
T ss_pred hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHh--------------
Confidence 45678999999962 269999999999999999999999999999988999999999999875311
Q ss_pred cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
........++.++|.++++++++++++.+++++|.+++
T Consensus 86 ------------~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~ 123 (165)
T 3fhm_A 86 ------------QGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGR 123 (165)
T ss_dssp ------------HGGGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHT
T ss_pred ------------cCCccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcC
Confidence 00012467899999999999999999999999998764
No 33
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.49 E-value=1.3e-14 Score=110.58 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=92.4
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc-CCCCCcccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFM 89 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~-~~~~~~~~v~~vm 89 (207)
.++++.++.+..+|.+.+.++|++++.|++ +..++.|++ |..|... .+..... .......+++++|
T Consensus 26 ~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd-----------~~~~lvGii-t~~Di~~-~~~~~~~~~~~~~~~~v~~im 92 (156)
T 3k6e_A 26 NLAVLIDTHNADHATLLLSQMTYTRVPVVT-----------DEKQFVGTI-GLRDIMA-YQMEHDLSQEIMADTDIVHMT 92 (156)
T ss_dssp SSCCEETTSBHHHHHHHHTTSSSSEEEEEC-----------C-CBEEEEE-EHHHHHH-HHHHHTCCHHHHTTSBGGGTC
T ss_pred HeEEECCcCCHHHHHHHHHHcCCcEEEEEc-----------CCCcEEEEE-Eecchhh-hhhhcccccccccccCHHHhh
Confidence 577999999999999999999999999997 566788888 8888311 1211111 0112356899999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++ ++.++++++++.++++.|.+++ .+||+|++|+++|+||.+|+++++
T Consensus 93 ~~--~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~ 140 (156)
T 3k6e_A 93 KT--DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAV 140 (156)
T ss_dssp BC--SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHH
T ss_pred cC--CceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHH
Confidence 99 9999999999999999998775 499999999999999999999864
No 34
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.48 E-value=2e-13 Score=101.28 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=82.0
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCC--cEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g--~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
++++++|++ ++.++++++++.++++.|.+++++++||+|++| +++|+||.+|+++.....
T Consensus 5 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~---------------- 66 (141)
T 2rih_A 5 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR---------------- 66 (141)
T ss_dssp CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT----------------
T ss_pred eEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC----------------
Confidence 579999999 999999999999999999999999999999877 999999999998753110
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.+++++++++ ++.+++++|.+++
T Consensus 67 ------------~~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~ 100 (141)
T 2rih_A 67 ------------LDLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHN 100 (141)
T ss_dssp ------------CCTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHT
T ss_pred ------------CCCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcC
Confidence 013467999999999999999 9999999998764
No 35
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.48 E-value=7.7e-14 Score=117.56 Aligned_cols=156 Identities=14% Similarity=0.117 Sum_probs=117.8
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc-CCceeeeecccchhhhhhhhhhccCC----CCCccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS-SDRVSALRRSSAVFASGTLTANSAAP----SSGVYT 84 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~-~~~~~~~~~s~~d~~~~~~~~~~~~~----~~~~~~ 84 (207)
.++++++++.+..+|.+.|.++++++++|++ + ..++.|++ |..|.. +.+...... .....+
T Consensus 126 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~~Giv-t~~dl~--~~~~~~~~~~~~~~~~~~~ 191 (330)
T 2v8q_E 126 KPLVCISPNASLFDAVSSLIRNKIHRLPVID-----------PESGNTLYIL-THKRIL--KFLKLFITEFPKPEFMSKS 191 (330)
T ss_dssp CCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC-----------TTTCCEEEEE-CHHHHH--HHHHHHSCSSSCCGGGGSB
T ss_pred CCceEeCCCCCHHHHHHHHHHCCCCeEEEEe-----------CCCCcEEEEE-cHHHHH--HHHHHHhhccCchhhhcCC
Confidence 4688999999999999999999999999996 4 56778888 877721 111111100 011234
Q ss_pred cccc--cc-ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 85 VGDF--MT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 85 v~~v--m~-~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
++++ |+ + ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++........
T Consensus 192 v~~~~v~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~-------------- 255 (330)
T 2v8q_E 192 LEELQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYN-------------- 255 (330)
T ss_dssp HHHHTCSBCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCC--------------
T ss_pred HHHhcccCcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccc--------------
Confidence 5555 55 5 789999999999999999999999999999889999999999999864221100
Q ss_pred hhHHHHHHHHhhhcCCcccccc------cCCCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLM------TPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im------~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++| .++++++++++++.+++++|.+++
T Consensus 256 ------------~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 295 (330)
T 2v8q_E 256 ------------NLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAE 295 (330)
T ss_dssp ------------CCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHT
T ss_pred ------------cccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCC
Confidence 0124566666 578999999999999999998764
No 36
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.47 E-value=1.1e-13 Score=100.23 Aligned_cols=95 Identities=20% Similarity=0.258 Sum_probs=81.6
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (207)
++++++|++ ++.++++++++.++++.|.+++++.+||+| +|+++|+|+.+|+++......
T Consensus 1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~----------------- 60 (125)
T 1pbj_A 1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD----------------- 60 (125)
T ss_dssp -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC-----------------
T ss_pred CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCC-----------------
Confidence 368899999 999999999999999999999999999999 899999999999987531100
Q ss_pred hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 61 ----------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~ 95 (125)
T 1pbj_A 61 ----------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNV 95 (125)
T ss_dssp ----------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHT
T ss_pred ----------cccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcC
Confidence 01356799999989999999999999999998764
No 37
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.47 E-value=9.4e-14 Score=105.30 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=82.7
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
+...+|+++|+++.+++++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++....
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~--------------- 99 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN--------------- 99 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC---------------
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc---------------
Confidence 3456899999985578999999999999999999999999999977 499999999999975310
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|+ +++++++++++.+++++|.+++
T Consensus 100 ---------------~~~~~v~~im~-~~~~v~~~~~l~~a~~~m~~~~ 132 (156)
T 3oi8_A 100 ---------------PEQFHLKSILR-PAVFVPEGKSLTALLKEFREQR 132 (156)
T ss_dssp ---------------GGGCCHHHHCB-CCCEEETTSBHHHHHHHHHHTT
T ss_pred ---------------CCcccHHHHcC-CCEEECCCCCHHHHHHHHHhcC
Confidence 02457889996 4889999999999999998764
No 38
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.47 E-value=1.3e-13 Score=102.04 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=93.1
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
.++++++++.+..+|.+.|.++++++++|++ ++ .++.|++ +..|... .+.. ......+++++
T Consensus 13 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd-----------~~~~~~vGiv-t~~dl~~--~~~~---~~~~~~~v~~~ 75 (136)
T 3lfr_A 13 SQMISIKATQTPREFLPAVIDAAHSRYPVIG-----------ESHDDVLGVL-LAKDLLP--LILK---ADGDSDDVKKL 75 (136)
T ss_dssp GGCCCEETTCCHHHHHHHHHHHCCSEEEEES-----------SSTTCEEEEE-EGGGGGG--GGGS---SSGGGCCGGGT
T ss_pred HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEc-----------CCCCcEEEEE-EHHHHHH--HHHh---ccCCCcCHHHH
Confidence 4578999999999999999999999999996 44 5788888 8777311 1110 12234579999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|++ +.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus 76 m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l 125 (136)
T 3lfr_A 76 LRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQI 125 (136)
T ss_dssp CBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC
T ss_pred cCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 965 78999999999999999999999999999889999999999999854
No 39
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.47 E-value=1.7e-13 Score=100.81 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=81.5
Q ss_pred ccccccc---ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 84 TVGDFMT---TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 84 ~v~~vm~---~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
+|+++|+ + ++.++++++++.++++.|.+++++.+||+| +|+++|+||.+|+++.....+.
T Consensus 7 ~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~-------------- 69 (135)
T 2rc3_A 7 TVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK-------------- 69 (135)
T ss_dssp BHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS--------------
T ss_pred eHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC--------------
Confidence 8999999 6 899999999999999999999999999999 8999999999999863211110
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 70 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~ 104 (135)
T 2rc3_A 70 ------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMR 104 (135)
T ss_dssp ------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHT
T ss_pred ------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhC
Confidence 01356799999999999999999999999998764
No 40
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.47 E-value=2.2e-13 Score=102.71 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=85.6
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
+...+|+++|++.+++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++....... + .
T Consensus 8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~-------~---~- 76 (157)
T 2emq_A 8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLER-------I---E- 76 (157)
T ss_dssp --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSS-------B---C-
T ss_pred HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccc-------c---c-
Confidence 3456899999964468999999999999999999999999999988999999999999976421100 0 0
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.......++.++|.++++++++++++.+++++|.+++
T Consensus 77 -----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~ 113 (157)
T 2emq_A 77 -----------FERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHP 113 (157)
T ss_dssp -----------GGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSS
T ss_pred -----------hHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCC
Confidence 0012456899999999999999999999999998764
No 41
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.46 E-value=1.2e-13 Score=104.31 Aligned_cols=96 Identities=22% Similarity=0.361 Sum_probs=82.9
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEE-cC-CCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVv-d~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
...+|+++|+++.+++++++++++.+|++.|.+++++++||+ ++ +|+++|+||.+|+++...
T Consensus 18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~---------------- 81 (153)
T 3oco_A 18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR---------------- 81 (153)
T ss_dssp HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH----------------
T ss_pred CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh----------------
Confidence 345899999975579999999999999999999999999999 64 489999999999997531
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++| ++++++++++++.+++++|.+++
T Consensus 82 --------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~ 115 (153)
T 3oco_A 82 --------------IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHR 115 (153)
T ss_dssp --------------HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTT
T ss_pred --------------cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcC
Confidence 11357899999 89999999999999999998764
No 42
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.46 E-value=1.8e-13 Score=104.04 Aligned_cols=105 Identities=25% Similarity=0.258 Sum_probs=84.1
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
.++|+++|++ +++++++++++.+|++.|.+++++.+||+|++|+++|+||.+||++........
T Consensus 4 ~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~-------------- 67 (160)
T 2o16_A 4 MIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQR-------------- 67 (160)
T ss_dssp CCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------------
T ss_pred cCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcc--------------
Confidence 4579999999 899999999999999999999999999999889999999999998754210000
Q ss_pred hhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...........++.++|.++++++++++++.+++++|.+++
T Consensus 68 -----~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 108 (160)
T 2o16_A 68 -----SAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHK 108 (160)
T ss_dssp -------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTT
T ss_pred -----cccccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhC
Confidence 00000012456899999999999999999999999998764
No 43
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.46 E-value=3e-13 Score=99.18 Aligned_cols=109 Identities=12% Similarity=0.030 Sum_probs=90.7
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
.++++++++.+..+|.+.|.+++.++++|++ +. +++.|++ +..|.... +. ....+++++
T Consensus 15 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~~~Giv-t~~dl~~~--~~------~~~~~v~~~ 74 (129)
T 3jtf_A 15 SRMDLLDISQPLPQLLATIIETAHSRFPVYE-----------DDRDNIIGIL-LAKDLLRY--ML------EPALDIRSL 74 (129)
T ss_dssp GGCCCEETTSCHHHHHHHHHHSCCSEEEEES-----------SSTTCEEEEE-EGGGGGGG--GT------CTTSCGGGG
T ss_pred HHeEEECCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCCcEEEEE-EHHHHHhH--hc------cCCcCHHHH
Confidence 4567999999999999999999999999996 43 6788888 77773111 11 124579999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|.+ +.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus 75 m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l 124 (129)
T 3jtf_A 75 VRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQI 124 (129)
T ss_dssp CBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHH
T ss_pred hCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 965 78999999999999999999999999999889999999999999854
No 44
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.46 E-value=8.7e-14 Score=102.09 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=92.2
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
..+++++++.+..+|.+.|.+++.++++|++ ++ .++.|++ +..|... .+.. .....+++++
T Consensus 16 ~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~~~Giv-t~~dl~~--~~~~----~~~~~~v~~~ 77 (130)
T 3i8n_A 16 PVVFRVDATMTINEFLDKHKDTPFSRPLVYS-----------EQKDNIIGFV-HRLELFK--MQQS----GSGQKQLGAV 77 (130)
T ss_dssp CCCCEEETTSBHHHHHHHTTTCSCSCCEEES-----------SSTTCEEEEC-CHHHHHH--HHHT----TTTTSBHHHH
T ss_pred HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEe-----------CCCCcEEEEE-EHHHHHH--HHhc----CCCcCCHHHH
Confidence 4567899999999999999999999999996 44 6788888 8777311 1111 1234679999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|. ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus 78 m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l 127 (130)
T 3i8n_A 78 MR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL 127 (130)
T ss_dssp SE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred hc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 94 478999999999999999999999999999889999999999999754
No 45
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.45 E-value=2.4e-13 Score=105.27 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=80.9
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC-CcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
+...+|+++|++..+++++++++++.++++.|.+++++++||+|++ |+++|+||.+||++...
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~---------------- 96 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI---------------- 96 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH----------------
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh----------------
Confidence 3456899999875479999999999999999999999999999976 89999999999997531
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++. + .++++++++++++.+++++|.+++
T Consensus 97 --------------~~~~~~v~-~-~~~~~~v~~~~~l~~al~~m~~~~ 129 (173)
T 3ocm_A 97 --------------TEGRVRRN-R-LRDPIIVHESIGILRLMDTLKRSR 129 (173)
T ss_dssp --------------HHSSCCGG-G-SBCCCEECGGGCHHHHHHHHHHST
T ss_pred --------------cCCcchhH-h-cCCCeEECCCCcHHHHHHHHHHcC
Confidence 11345677 4 478899999999999999998864
No 46
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.45 E-value=3.8e-13 Score=107.00 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=83.0
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHc---CCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~---~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
...+|+++|++ +++++++++++.++++.|.++ +++++||+|++|+++|+||.+|++..
T Consensus 52 ~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----------------- 112 (205)
T 3kxr_A 52 SENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH----------------- 112 (205)
T ss_dssp CTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS-----------------
T ss_pred CcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC-----------------
Confidence 34589999999 999999999999999999987 89999999999999999999999863
Q ss_pred cchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|+++++++++++++.+++++|.+++
T Consensus 113 ----------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 146 (205)
T 3kxr_A 113 ----------------EPHEPLISLLSEDSRALTANTTLLDAAEAIEHSR 146 (205)
T ss_dssp ----------------CTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSS
T ss_pred ----------------CCcchHHHHhcCCCeEECCCCCHHHHHHHHHhcC
Confidence 1346799999999999999999999999998864
No 47
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.45 E-value=3e-13 Score=102.65 Aligned_cols=97 Identities=24% Similarity=0.210 Sum_probs=82.8
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
..++|+++|++ . +++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++......
T Consensus 15 ~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------- 76 (159)
T 3fv6_A 15 KKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ--------------- 76 (159)
T ss_dssp TTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS---------------
T ss_pred hhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC---------------
Confidence 45689999997 5 49999999999999999999999999998899999999999998541100
Q ss_pred hhhHHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.+ +++++++++++.+++++|.+++
T Consensus 77 ------------~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~ 113 (159)
T 3fv6_A 77 ------------ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQ 113 (159)
T ss_dssp ------------CTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHT
T ss_pred ------------cccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcC
Confidence 1245689999998 8899999999999999998764
No 48
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.45 E-value=2.2e-13 Score=101.97 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=92.3
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
++++++++.+..+|.+.|.++++++++|++ +. .++.|++ +..|... .+.... ..+++++|
T Consensus 34 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~lvGiv-t~~dl~~--~~~~~~-----~~~v~~~m 94 (148)
T 3lv9_A 34 DMVCIYESDSEEKILAILKEEGVTRYPVCR-----------KNKDDILGFV-HIRDLYN--QKINEN-----KIELEEIL 94 (148)
T ss_dssp TCCCEETTCCHHHHHHHHHHSCCSEEEEES-----------SSTTSEEEEE-EHHHHHH--HHHHHS-----CCCGGGTC
T ss_pred HeEEECCCCCHHHHHHHHHHCCCCEEEEEc-----------CCCCcEEEEE-EHHHHHH--HHhcCC-----CccHHHhc
Confidence 577999999999999999999999999996 44 6788888 7777311 111110 35799999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus 95 -~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l 143 (148)
T 3lv9_A 95 -R--DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEI 143 (148)
T ss_dssp -B--CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHH
T ss_pred -C--CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 6 799999999999999999999999999999889999999999999854
No 49
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.45 E-value=1.1e-13 Score=116.11 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=120.7
Q ss_pred ccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhh--hhhhhc----cCC
Q 028558 5 VLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASG--TLTANS----AAP 78 (207)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~--~~~~~~----~~~ 78 (207)
+++++..+++++++.+..+|.+.|.+++++++.|.+ .+..++.+++ |..|.... ...... .-.
T Consensus 35 ~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d----------~~~~~lvGil-t~~Dl~~~l~~~~~~~~~~~~l~ 103 (323)
T 3t4n_C 35 VLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWD----------SKTSRFAGLL-TTTDFINVIQYYFSNPDKFELVD 103 (323)
T ss_dssp HSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEE----------TTTTEEEEEE-CHHHHHHHHHHHHHCGGGGGGGG
T ss_pred hCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEe----------CCCCeEEEEE-EHHHHHHHHHHHHcCcchhHHHH
Confidence 568889999999999999999999999999999985 1234677888 77772111 000000 000
Q ss_pred CCCc------ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCc-----EEEEEehhhHHhhhcccCCC
Q 028558 79 SSGV------YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK-----LVGLVSDYDLLALDSISGSG 147 (207)
Q Consensus 79 ~~~~------~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~-----lvGiVt~~dl~~~~~~~~~~ 147 (207)
.... .++.++|++ +++++++++++.++++.|.+++++++||+|+++. ++|+||.+|+++.......
T Consensus 104 ~~~~~~v~~i~~~~~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~- 180 (323)
T 3t4n_C 104 KLQLDGLKDIERALGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCR- 180 (323)
T ss_dssp GCBHHHHHHHHHHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCG-
T ss_pred HHHHHHHHHHHHHhCCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCC-
Confidence 0001 123445677 8999999999999999999999999999997775 9999999999975421000
Q ss_pred CCCCCCCCcccchhhhHHHHHHHHhhhcCCccccc---ccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 148 RADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDL---MTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
. ......++.++ |.++++++++++++.+++++|.+++
T Consensus 181 ----------------------~-~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~ 220 (323)
T 3t4n_C 181 ----------------------E-THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGR 220 (323)
T ss_dssp ----------------------G-GGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHT
T ss_pred ----------------------c-hhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcC
Confidence 0 11245678898 8889999999999999999998764
No 50
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.45 E-value=1.3e-13 Score=101.21 Aligned_cols=97 Identities=20% Similarity=0.271 Sum_probs=82.3
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh-hhcccCCCCCCCCCCCcccch
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~-~~~~~~~~~~~~~~~~~~~~~ 160 (207)
..+++++|++ ++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++ ......
T Consensus 7 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~--------------- 69 (133)
T 1y5h_A 7 MTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL--------------- 69 (133)
T ss_dssp -CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC---------------
T ss_pred hcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCC---------------
Confidence 3579999999 8999999999999999999999999999988899999999999984 321100
Q ss_pred hhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 70 ------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~ 104 (133)
T 1y5h_A 70 ------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQ 104 (133)
T ss_dssp ------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHT
T ss_pred ------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcC
Confidence 01346799999999999999999999999998764
No 51
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.44 E-value=2.9e-13 Score=104.25 Aligned_cols=110 Identities=17% Similarity=0.102 Sum_probs=93.5
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
.++++++++.+..+|.+.|.++++++++|++ ++ +++.|++ +..|... .+.. ....+++++
T Consensus 52 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd-----------~~~~~lvGiv-t~~dl~~--~~~~-----~~~~~v~~i 112 (172)
T 3lhh_A 52 SDIVFLDLNLPLDANLRTVMQSPHSRFPVCR-----------NNVDDMVGII-SAKQLLS--ESIA-----GERLELVDL 112 (172)
T ss_dssp GGCCCEETTSCHHHHHHHHHTCCCSEEEEES-----------SSTTSEEEEE-EHHHHHH--HHHT-----TCCCCGGGG
T ss_pred HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEe-----------CCCCeEEEEE-EHHHHHH--HHhh-----cCcccHHHH
Confidence 4678999999999999999999999999996 44 6788888 7777311 1111 124579999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
| + ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus 113 m-~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l 162 (172)
T 3lhh_A 113 V-K--NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDAL 162 (172)
T ss_dssp C-B--CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred h-c--CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHH
Confidence 9 7 899999999999999999999999999999889999999999999864
No 52
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.44 E-value=1e-13 Score=101.30 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=92.2
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++.++.++.+..+|.+.|.+++.++++|++ + .++.|++ +..|... .+.. ......+++++|.
T Consensus 14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~-~~~~Giv-t~~dl~~--~~~~---~~~~~~~v~~~m~ 75 (128)
T 3gby_A 14 DYPVFTLGGSTADAARRLAASGCACAPVLD-----------G-ERYLGMV-HLSRLLE--GRKG---WPTVKEKLGEELL 75 (128)
T ss_dssp CSCCEETTSBHHHHHHHHHHHTCSEEEEEE-----------T-TEEEEEE-EHHHHHT--TCSS---SCCTTCBCCGGGC
T ss_pred CcceECCCCCHHHHHHHHHHCCCcEEEEEE-----------C-CEEEEEE-EHHHHHH--HHhh---CCcccCcHHHHcc
Confidence 466889999999999999999999999996 4 6777888 7666311 1111 1122357999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ ++.++.+++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus 76 ~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (128)
T 3gby_A 76 E--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124 (128)
T ss_dssp B--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred C--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence 9 899999999999999999999999999999899999999999999854
No 53
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.43 E-value=3e-13 Score=102.43 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=86.5
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
+...+|+++|++.+++.++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++....... + .
T Consensus 11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~-------~---~- 79 (159)
T 1yav_A 11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLER-------I---E- 79 (159)
T ss_dssp CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSS-------B---C-
T ss_pred HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcc-------c---c-
Confidence 3456899999875568999999999999999999999999999988999999999999976422110 0 0
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.......++.++|.++++++++++++.+++++|.+++
T Consensus 80 -----------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~ 116 (159)
T 1yav_A 80 -----------FEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG 116 (159)
T ss_dssp -----------GGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS
T ss_pred -----------hhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCC
Confidence 0012456899999999999999999999999998764
No 54
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.43 E-value=6.9e-13 Score=103.05 Aligned_cols=97 Identities=23% Similarity=0.222 Sum_probs=83.6
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (207)
++|+++|++ +++++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++.......
T Consensus 9 ~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~---------------- 70 (184)
T 1pvm_A 9 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---------------- 70 (184)
T ss_dssp CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC----------------
T ss_pred cCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc----------------
Confidence 579999998 99999999999999999999999999999988999999999999875421000
Q ss_pred hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 71 ----------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 105 (184)
T 1pvm_A 71 ----------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENG 105 (184)
T ss_dssp ----------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHT
T ss_pred ----------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcC
Confidence 01346799999989999999999999999998764
No 55
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.42 E-value=2.5e-13 Score=99.90 Aligned_cols=114 Identities=15% Similarity=0.026 Sum_probs=92.7
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
..+++++++.+..+|.+.+.+++.++++|++ .+.+++.|++ +..|... .+.. .......+++++|
T Consensus 12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~----------~~~~~lvGiv-t~~dl~~--~~~~--~~~~~~~~v~~~m 76 (130)
T 3hf7_A 12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYR----------DSLDDAISML-RVREAYR--LMTE--KKEFTKEIMLRAA 76 (130)
T ss_dssp GGCCEEETTSCHHHHHHHHHTCSSSEEEEES----------SSGGGEEEEE-EHHHHHH--HHTS--SSCCCHHHHHHHS
T ss_pred HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEc----------CCCCcEEEEE-EHHHHHH--HHhc--cCccchhhHHHhc
Confidence 3577999999999999999999999999995 1246788888 7777311 1111 1123345789999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus 77 -~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l 125 (130)
T 3hf7_A 77 -D--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI 125 (130)
T ss_dssp -B--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred -c--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHH
Confidence 4 589999999999999999999999999999889999999999999854
No 56
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.42 E-value=2.6e-13 Score=97.92 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=92.9
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++.++.+..+|.+.+.+++.++++|++ +..++.|++ +..|.. +.+.. ...+++++|.
T Consensus 10 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~G~v-t~~dl~--~~~~~------~~~~v~~~~~ 69 (122)
T 3kpb_A 10 PPITAHSNISIMEAAKILIKHNINHLPIVD-----------EHGKLVGII-TSWDIA--KALAQ------NKKTIEEIMT 69 (122)
T ss_dssp CCCCEETTSBHHHHHHHHHHHTCSCEEEEC-----------TTSBEEEEE-CHHHHH--HHHHT------TCCBGGGTSB
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCeEEEEC-----------CCCCEEEEE-EHHHHH--HHHHh------cccCHHHHhc
Confidence 567899999999999999999999999996 567788888 777731 11111 1227999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus 70 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l 118 (122)
T 3kpb_A 70 R--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF 118 (122)
T ss_dssp S--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred C--CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence 9 899999999999999999999999999999889999999999999864
No 57
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.41 E-value=5.7e-13 Score=112.20 Aligned_cols=165 Identities=16% Similarity=0.082 Sum_probs=118.5
Q ss_pred ccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-Cceeeeecccchhhhhhhhhh--ccC---CCC
Q 028558 7 PHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTAN--SAA---PSS 80 (207)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~--~~~---~~~ 80 (207)
+++.++++++++.+..+|.+.+.+++++++.|++ .. +++.|++ +..|... .+... ... ...
T Consensus 42 ~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d-----------~~~~~~vGiv-t~~Dll~-~l~~~~~~~~~~~~~l 108 (330)
T 2v8q_E 42 PTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWD-----------SKKQSFVGML-TITDFIN-ILHRYYKSALVQIYEL 108 (330)
T ss_dssp CSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEE-----------TTTTEEEEEE-EHHHHHH-HHHHHHHHHTTTCCCG
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEe-----------CCCCeEEEEE-EHHHHHH-HHHHHHhccccchhHH
Confidence 4566788999999999999999999999999996 33 5677888 7777211 11110 000 011
Q ss_pred Ccc-------cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC-CCcEEEEEehhhHHhhhcccCCCCCCCC
Q 028558 81 GVY-------TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISGSGRADNS 152 (207)
Q Consensus 81 ~~~-------~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~dl~~~~~~~~~~~~~~~ 152 (207)
... +++++|++ ++.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.........
T Consensus 109 ~~~~~~~~~~~~~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~---- 182 (330)
T 2v8q_E 109 EEHKIETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEF---- 182 (330)
T ss_dssp GGCBHHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSS----
T ss_pred hhccHHHHHHHHhhcccC--CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhcc----
Confidence 111 23567888 8999999999999999999999999999997 799999999999997642110000
Q ss_pred CCCcccchhhhHHHHHHHHhhhcCCccccc--cc-CCCeEecCCCCHHHHHHHHhhcC
Q 028558 153 MFPEVDSTWKTFNEVQKLLSKTNGKMVGDL--MT-PAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--m~-~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
+ .. .....++.++ |+ ++++++++++++.+++++|.+++
T Consensus 183 --~-~~--------------~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~ 223 (330)
T 2v8q_E 183 --P-KP--------------EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHR 223 (330)
T ss_dssp --S-CC--------------GGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHC
T ss_pred --C-ch--------------hhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcC
Confidence 0 00 0012344444 54 68899999999999999998764
No 58
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.39 E-value=5.7e-13 Score=99.36 Aligned_cols=117 Identities=19% Similarity=0.230 Sum_probs=92.5
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhh-------hh--hccCCCCC
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTL-------TA--NSAAPSSG 81 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~-------~~--~~~~~~~~ 81 (207)
+++++.++.+..+|.+.+.++++++++|++ ++.++.|++ +..|....-. .. ........
T Consensus 16 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~G~v-t~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 83 (152)
T 4gqw_A 16 DLHVVKPTTTVDEALELLVENRITGFPVID-----------EDWKLVGLV-SDYDLLALDSGDSTWKTFNAVQKLLSKTN 83 (152)
T ss_dssp TCCCBCTTSBHHHHHHHHHHTTCSEEEEEC-----------TTCBEEEEE-EHHHHTTCC----CCHHHHHHHTC-----
T ss_pred CCeEECCCCcHHHHHHHHHHcCCceEEEEe-----------CCCeEEEEE-EHHHHHHhhcccCcccchHHHHHHHHHhc
Confidence 577999999999999999999999999997 455677777 7666211000 00 00011233
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
..+++++|.+ ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus 84 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~ 141 (152)
T 4gqw_A 84 GKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAA 141 (152)
T ss_dssp CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred cccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 4689999999 899999999999999999999999999999889999999999999864
No 59
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.39 E-value=6.1e-13 Score=98.65 Aligned_cols=111 Identities=17% Similarity=0.098 Sum_probs=92.5
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCC--ceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSD--RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~--~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
++++++++.+..+|.+.+.++++++++|++ ++. ++.|++ +..|... .+... .....+++++
T Consensus 14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~~~Giv-t~~dl~~--~~~~~---~~~~~~v~~~ 76 (141)
T 2rih_A 14 PPVSLPETATIREVATELAKNRVGLAVLTA-----------RDNPKRPVAVV-SERDILR--AVAQR---LDLDGPAMPI 76 (141)
T ss_dssp CCEEEETTCBHHHHHHHHHHHTCSEEEEEE-----------TTEEEEEEEEE-EHHHHHH--HHHTT---CCTTSBSGGG
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCcceeEEEE-EHHHHHH--HHhcC---CCCCCCHHHH
Confidence 577899999999999999999999999996 444 677888 7777311 12221 1224689999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|.+ ++.+++++ ++.++++.|.+++.+++||+|++|+++|+||.+|+++..
T Consensus 77 m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 126 (141)
T 2rih_A 77 ANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 126 (141)
T ss_dssp CBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred cCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence 999 89999999 999999999999999999999889999999999998753
No 60
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.39 E-value=4.3e-13 Score=100.43 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=92.7
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhh-hccC-CCCCcccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTA-NSAA-PSSGVYTVGD 87 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~-~~~~-~~~~~~~v~~ 87 (207)
.+++++.++.+..+|.+.+.++++++++|++ ++.++.|++ |..|... .+.. .... ......++++
T Consensus 25 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd-----------~~~~~~Giv-t~~dl~~-~~~~~~~~~~~~~~~~~v~~ 91 (150)
T 3lqn_A 25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLD-----------PMYKLHGLI-STAMILD-GILGLERIEFERLEEMKVEQ 91 (150)
T ss_dssp GGSCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHHHH-HTBCSSSBCGGGGGGCBGGG
T ss_pred CceEEECCCCcHHHHHHHHHHcCCcEEEEEC-----------CCCCEEEEE-EHHHHHH-HHHhhcccchhHHhcCCHHH
Confidence 4578999999999999999999999999996 567778888 7777311 1110 0000 1123568999
Q ss_pred cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+|.+ ++.++++++++.++++.|.++++ +||+|++|+++|+||.+|+++.+
T Consensus 92 ~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l 141 (150)
T 3lqn_A 92 VMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLL 141 (150)
T ss_dssp TCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHH
T ss_pred HhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHH
Confidence 9998 89999999999999999999887 99999889999999999999864
No 61
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.39 E-value=5.1e-13 Score=100.72 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=92.5
Q ss_pred cccccccCCCCCCcccccccccCCCEEEee-CCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLS-RPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt-~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
.++++++++.+..+|.+.|.++++++++|+ + .+.+++.|++ +..|... .+... ...+++++
T Consensus 30 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d----------~~~~~lvGiv-t~~dl~~--~~~~~-----~~~~v~~~ 91 (153)
T 3oco_A 30 TSMSVVDVDETIADALLLYLEEQYSRFPVTAD----------NDKDKIIGYA-YNYDIVR--QARID-----DKAKISTI 91 (153)
T ss_dssp GGCCCEETTSBHHHHHHHHHHHCCSEEEEEET----------TEEEEEEEEE-EHHHHHH--HHHHH-----TTSBGGGT
T ss_pred hheEEEcCCCCHHHHHHHHHhCCCCEEEEEEC----------CCCCcEEEEE-EHHHHHh--HHhcC-----CCCcHHHH
Confidence 367899999999999999999999999998 5 0236778888 7777311 11111 14579999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
| + ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus 92 m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l 141 (153)
T 3oco_A 92 M-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEEL 141 (153)
T ss_dssp C-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHH
T ss_pred h-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHH
Confidence 9 7 799999999999999999999999999999889999999999999865
No 62
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.38 E-value=6.9e-13 Score=100.47 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=89.1
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
++++++++.+..+|.+.|.++++++++|++ ++ .++.|++ +..|... .+.. ....+++++|
T Consensus 49 ~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd-----------~~~~~lvGiv-t~~dl~~--~~~~-----~~~~~v~~im 109 (156)
T 3oi8_A 49 RMNVLKENDSIERITAYVIDTAHSRFPVIG-----------EDKDEVLGIL-HAKDLLK--YMFN-----PEQFHLKSIL 109 (156)
T ss_dssp GCCCEETTCCHHHHHHHHHHHCCSEEEEES-----------SSTTCEEEEE-EGGGGGG--GSSC-----GGGCCHHHHC
T ss_pred HeEEECCCCCHHHHHHHHHHCCCCEEEEEc-----------CCCCcEEEEE-EHHHHHH--HHHc-----CCcccHHHHc
Confidence 578999999999999999999999999996 44 3788888 7777311 1111 1345799999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHH
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~ 138 (207)
.+ +.++++++++.++++.|.+++.+++||+|++|+++|+||.+|++
T Consensus 110 ~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 110 RP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp BC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred CC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 65 78999999999999999999999999999889999999999986
No 63
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.38 E-value=6.3e-13 Score=100.34 Aligned_cols=113 Identities=22% Similarity=0.327 Sum_probs=94.2
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.+++++.++.+..+|.+.+.++++++++|. ++.++.|++ +..|... .+... .......+++++|
T Consensus 21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~------------~~~~~~Giv-t~~dl~~-~~~~~--~~~~~~~~v~~~m 84 (157)
T 4fry_A 21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVV------------DGDDIAGIV-TERDYAR-KVVLQ--ERSSKATRVEEIM 84 (157)
T ss_dssp CCCCEEETTSBHHHHHHHHHHHTCSEEEEE------------SSSSEEEEE-EHHHHHH-HSGGG--TCCSSSCBHHHHS
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEe------------eCCEEEEEE-EHHHHHH-HHHhc--cCCccccCHHHHc
Confidence 567899999999999999999999999996 456777888 7777311 12111 1123456899999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+ ++.++.+++++.++++.|.+++++++||+| +|+++|+||.+|+++.+
T Consensus 85 ~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l 133 (157)
T 4fry_A 85 TA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSV 133 (157)
T ss_dssp BS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred CC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 99 899999999999999999999999999999 79999999999999865
No 64
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.38 E-value=3.2e-13 Score=103.80 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=93.2
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh----------------
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN---------------- 74 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~---------------- 74 (207)
+++++.++.+..+|.+.|.++++++++|++ ++.++.|++ +..|......+..
T Consensus 15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-----------~~~~~~Giv-t~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (180)
T 3sl7_A 15 NLHVVKPSTSVDDALELLVEKKVTGLPVID-----------DNWTLVGVV-SDYDLLALDSISGRSQNDTNLFPDVDSTW 82 (180)
T ss_dssp GCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHHTCC-------------------CC
T ss_pred CceeeCCCCcHHHHHHHHHHcCCCeEEEEC-----------CCCeEEEEE-EHHHHHhhhhhccccCCcccccccccchh
Confidence 577999999999999999999999999997 456677777 6666211100000
Q ss_pred -------ccCCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 75 -------SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 75 -------~~~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.........+++++|++ ++.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~ 154 (180)
T 3sl7_A 83 KTFNELQKLISKTYGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAA 154 (180)
T ss_dssp CSHHHHHHHHHTTTTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred hhhHHHHHHHhccccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence 00001235679999999 899999999999999999999999999999889999999999999864
No 65
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.38 E-value=1.8e-12 Score=103.35 Aligned_cols=90 Identities=23% Similarity=0.248 Sum_probs=82.0
Q ss_pred ccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (207)
Q Consensus 83 ~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (207)
.+++++|.+ +++++.+++++.++++.|.+++++++||+|++|+++|+||.+|+.+..
T Consensus 13 ~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~--------------------- 69 (213)
T 1vr9_A 13 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD--------------------- 69 (213)
T ss_dssp CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC---------------------
T ss_pred cCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc---------------------
Confidence 368999999 999999999999999999999999999999889999999999998742
Q ss_pred hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...++.++|+++++++++++++.+++++|.+++
T Consensus 70 ------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 102 (213)
T 1vr9_A 70 ------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQ 102 (213)
T ss_dssp ------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCC
T ss_pred ------------CCCcHHHHccCCCEEECCCCcHHHHHHHHHHhC
Confidence 245799999999999999999999999998864
No 66
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.38 E-value=6.2e-13 Score=97.79 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=92.4
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.+++++.++.+..+|.+.+.+++.++++|++ ++++.|++ +..|.. .+....+ ......+++++|
T Consensus 17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd------------~~~~~Giv-t~~dl~-~~~~~~~--~~~~~~~v~~~m 80 (135)
T 2rc3_A 17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK------------DEKLVGIL-TERDFS-RKSYLLD--KPVKDTQVKEIM 80 (135)
T ss_dssp CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE------------TTEEEEEE-EHHHHH-HHGGGSS--SCGGGSBGGGTS
T ss_pred CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE------------CCEEEEEE-ehHHHH-HHHHHcC--CCcccCCHHHhc
Confidence 4677899999999999999999999999994 34566777 766631 1122211 123456899999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+ ++.++++++++.++++.|.+++.+++||+| +|+++|+||.+|+++.+
T Consensus 81 ~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~ 129 (135)
T 2rc3_A 81 TR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA 129 (135)
T ss_dssp BC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred cC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHH
Confidence 99 899999999999999999999999999999 79999999999999754
No 67
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.38 E-value=1.3e-12 Score=98.79 Aligned_cols=114 Identities=23% Similarity=0.298 Sum_probs=85.1
Q ss_pred CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCE-eEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCc
Q 028558 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (207)
Q Consensus 78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~-lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~ 156 (207)
......+|+++|++ ++.++++++++.+|++.|.+++++. +||+|++ +++|+||.+||++...... ...+..
T Consensus 11 ~~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~-----~~~~~~ 82 (157)
T 1o50_A 11 HHMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHF-----FGFIPK 82 (157)
T ss_dssp TTCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHH-----HCCCC-
T ss_pred hhhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhH-----Hhhhcc
Confidence 34566789999999 9999999999999999999999999 9999977 9999999999997532100 000000
Q ss_pred ccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
+ ..+..........++.++|.+ ++++++++++.+++++|.+++
T Consensus 83 ----~---~~~~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~ 125 (157)
T 1o50_A 83 ----E---ELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNN 125 (157)
T ss_dssp -------------CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHT
T ss_pred ----H---HHHHHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCC
Confidence 0 000000001245678999998 999999999999999998764
No 68
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.38 E-value=8.3e-13 Score=99.36 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=93.5
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.++++++++.+..+|.+.|.++++++++|++ +++++.|++ +..|... .+.... ......+++++|
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~vGiv-t~~dl~~--~~~~~~-~~~~~~~v~~~m 93 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVVD-----------EKGRVVDIY-SKFDVIN--LAAEKT-YNNLDVSVTKAL 93 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-----------TTSBEEEEE-EHHHHHH--HHHCSS-CCCTTSBGGGGG
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEEC-----------CCCcEEEEE-eHHHHHH--Hhcchh-hhhhcchHHHHH
Confidence 4567899999999999999999999999996 556788888 7777311 111110 012345789999
Q ss_pred c------ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 T------TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~------~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
. + ++.++.+++++.++++.|.+++.+++||+|++|+++|+||..|+++.+
T Consensus 94 ~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~l 149 (152)
T 2uv4_A 94 QHRSHYFE--GVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 149 (152)
T ss_dssp GTCCHHHH--TCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred hhhhcccC--CCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHHH
Confidence 7 6 789999999999999999999999999999889999999999999753
No 69
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.38 E-value=5.9e-13 Score=97.56 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=93.4
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..+|.+.+.+++.++++|++ ++.++.|++ +..|... +.+... ......+++++|.
T Consensus 17 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~-~~~~~~--~~~~~~~v~~~m~ 81 (133)
T 1y5h_A 17 GVTCVGEHETLTAAAQYMREHDIGALPICG-----------DDDRLHGML-TDRDIVI-KGLAAG--LDPNTATAGELAR 81 (133)
T ss_dssp TCCCEETTSBHHHHHHHHHHHTCSEEEEEC-----------GGGBEEEEE-EHHHHHH-TTGGGT--CCTTTSBHHHHHT
T ss_pred CceEeCCCCCHHHHHHHHHHhCCCeEEEEC-----------CCCeEEEEE-eHHHHHH-HHHhcC--CCccccCHHHHhc
Confidence 567899999999999999999999999996 566778888 7766311 122221 1234568999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ ++.++++++++.++++.|.+++.+++||+|+ |+++|+||.+|+++.+
T Consensus 82 ~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l 129 (133)
T 1y5h_A 82 D--SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL 129 (133)
T ss_dssp T--CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred C--CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 9 8999999999999999999999999999997 9999999999999753
No 70
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.38 E-value=5.3e-13 Score=101.85 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=94.7
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
-+++++.++.+..+|.+.+.++++++++|++ ++.++.|++ +..|... .+.... ......+++++|
T Consensus 35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~-~~~~~~--~~~~~~~v~~~m 99 (165)
T 3fhm_A 35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTD-----------ADGVVLGIF-TERDLVK-AVAGQG--AASLQQSVSVAM 99 (165)
T ss_dssp SCCCEECTTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHH-HHHHHG--GGGGTSBGGGTS
T ss_pred CCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-----------CCCeEEEEE-EHHHHHH-HHHhcC--CccccCCHHHHh
Confidence 3577999999999999999999999999996 567788888 7777311 111111 012345799999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+ ++.++.+++++.++++.|.+++++++||+|+ |+++|+||.+|+++.+
T Consensus 100 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~ 148 (165)
T 3fhm_A 100 TK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKAR 148 (165)
T ss_dssp BS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHT
T ss_pred cC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 99 8999999999999999999999999999997 9999999999999864
No 71
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.38 E-value=6e-13 Score=99.81 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=92.6
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++.++.+..+|.+.+.++++++++|++ +..++.|++ +..|.. +.+.. .......+++++|+
T Consensus 39 ~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~--~~~~~--~~~~~~~~v~~~m~ 102 (149)
T 3k2v_A 39 EIPHVGLQATLRDALLEITRKNLGMTAICD-----------DDMNIIGIF-TDGDLR--RVFDT--GVDMRDASIADVMT 102 (149)
T ss_dssp GSCEECTTCBHHHHHHHHHHHTSSEEEEEC-----------TTCBEEEEE-EHHHHH--HHHCS--SSCCTTCBHHHHSE
T ss_pred CCeEECCCCcHHHHHHHHHhCCCcEEEEEC-----------CCCcEEEEe-cHHHHH--HHHhc--CCCcccCcHHHHcC
Confidence 567999999999999999999999999997 566788888 777731 22222 11234568999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+ ++.++.+++++.++++.|.+++++++||+|++ +++|+||.+|+++
T Consensus 103 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 103 R--GGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp E--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred C--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 9 89999999999999999999999999999965 9999999999975
No 72
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.37 E-value=1.2e-12 Score=101.16 Aligned_cols=120 Identities=20% Similarity=0.250 Sum_probs=84.5
Q ss_pred CCcccccccccccCC--ceEE--CCCCCHHHHHHHHHHcCCCEeEEE--cCCCcEEEEEehhhHHhhhcccCCCC-----
Q 028558 80 SGVYTVGDFMTTKEE--LHVV--KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISGSGR----- 148 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~--~~~v--~~~~~v~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~dl~~~~~~~~~~~----- 148 (207)
....+|+++|++..+ ++++ .+++++.+|++.|.+++++.+||+ |++|+++|+||.+|+++.........
T Consensus 8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~ 87 (185)
T 2j9l_A 8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS 87 (185)
T ss_dssp -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence 345689999999211 7888 999999999999999999999999 77899999999999987642110000
Q ss_pred CCCCCCCcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 149 ADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....+......+ ........++.++|.++++++++++++.+++++|.+++
T Consensus 88 ~~~~~~~~~~~~~--------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 138 (185)
T 2j9l_A 88 TSIIYFTEHSPPL--------PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLG 138 (185)
T ss_dssp TCEEECSSSCCCC--------CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHT
T ss_pred cceeecccCCccc--------ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCC
Confidence 0000000000000 00002346789999989999999999999999998764
No 73
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.37 E-value=1.1e-12 Score=104.28 Aligned_cols=108 Identities=18% Similarity=0.121 Sum_probs=92.8
Q ss_pred cccccccCCCCCCccccccccc---CCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFAL---QLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVG 86 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~---~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~ 86 (207)
..+++++++.+..+|.+.+.++ ++..+.|++ +..++.|++ +..|... . ....+++
T Consensus 62 ~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd-----------~~~~lvGiv-t~~dll~------~----~~~~~v~ 119 (205)
T 3kxr_A 62 HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVD-----------EADKYLGTV-RRYDIFK------H----EPHEPLI 119 (205)
T ss_dssp CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEEC-----------TTCBEEEEE-EHHHHTT------S----CTTSBGG
T ss_pred CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEc-----------CCCeEEEEE-EHHHHHh------C----CCcchHH
Confidence 3678999999999999999887 899999997 667788888 6666311 1 2245799
Q ss_pred ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++|++ +++++++++++.++++.|.+++++.+||+|++|+++|+||..|++..+
T Consensus 120 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i 172 (205)
T 3kxr_A 120 SLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALV 172 (205)
T ss_dssp GGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred HHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 99999 899999999999999999999999999999889999999999999864
No 74
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.37 E-value=1e-12 Score=96.81 Aligned_cols=113 Identities=18% Similarity=0.254 Sum_probs=93.9
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.++++++++.+..+|.+.+.++++++++|++ ++.++.|++ +..|... +.+... .....+++++|
T Consensus 15 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~-~~~~~~---~~~~~~v~~~m 78 (138)
T 2yzi_A 15 KKLLGVKPSTSVQEASRLMMEFDVGSLVVIN-----------DDGNVVGFF-TKSDIIR-RVIVPG---LPYDIPVERIM 78 (138)
T ss_dssp CCCCEECTTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHH-HTTTTC---CCTTSBGGGTC
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEE-eHHHHHH-HHHhcC---CcccCCHHHHh
Confidence 3677899999999999999999999999996 566788888 7776311 122111 13356899999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+ ++.++++++++.++++.|.+++.+++ |+|++|+++|+||.+|+++..
T Consensus 79 ~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~ 127 (138)
T 2yzi_A 79 TR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEAS 127 (138)
T ss_dssp BC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHH
T ss_pred hC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHH
Confidence 99 89999999999999999999999999 999889999999999999864
No 75
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.36 E-value=8.6e-13 Score=100.09 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=94.0
Q ss_pred ccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccccc
Q 028558 13 ARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTK 92 (207)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~~ 92 (207)
+++.++.+..+|.+.|.++++++++|++ ++..+.|++ +..|... .++. .......+++++|++.
T Consensus 27 ~~v~~~~~~~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~-~~~~---~~~~~~~~v~~~m~~~ 90 (159)
T 3fv6_A 27 VVIHENVSVYDAICTMFLEDVGTLFVVD-----------RDAVLVGVL-SRKDLLR-ASIG---QQELTSVPVHIIMTRM 90 (159)
T ss_dssp CEEETTSBHHHHHHHHHHHTCSEEEEEC-----------TTSCEEEEE-EHHHHHH-HHTS---CSCTTTCBGGGTSEET
T ss_pred EEECCCCcHHHHHHHHHHCCCCEEEEEc-----------CCCcEEEEE-eHHHHHH-Hhhc---cCcccCcCHHHHHcCC
Confidence 4999999999999999999999999996 567788888 7777311 1111 1223456899999974
Q ss_pred CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCC---cEEEEEehhhHHhhh
Q 028558 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALD 141 (207)
Q Consensus 93 ~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g---~lvGiVt~~dl~~~~ 141 (207)
.++.++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+
T Consensus 91 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l 142 (159)
T 3fv6_A 91 PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL 142 (159)
T ss_dssp TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHH
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHH
Confidence 4688999999999999999999999999999887 999999999999864
No 76
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.36 E-value=5.4e-13 Score=100.61 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=91.7
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccC-CCCCccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDF 88 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~-~~~~~~~v~~v 88 (207)
.++++++++.+..+|.+.|.++++++++|++ +++++.|++ |..|... .+...... ......+++++
T Consensus 25 ~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-----------~~~~~~Gii-t~~dl~~-~~~~~~~~~~~~~~~~v~~~ 91 (156)
T 3ctu_A 25 KNLAVLIDTHNADHATLLLSQMTYTRVPVVT-----------DEKQFVGTI-GLRDIMA-YQMEHDLSQEIMADTDIVHM 91 (156)
T ss_dssp GGCCCEETTSBHHHHHHHHTTCSSSEEEEEC-----------C-CBEEEEE-EHHHHHH-HHHHHTCCHHHHTTSBGGGG
T ss_pred cCceEECCCCCHHHHHHHHHHCCCceEeEEC-----------CCCEEEEEE-cHHHHHH-HHHhccccccccccCcHHHh
Confidence 4577999999999999999999999999996 567788888 7777311 11111110 00124579999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|++ ++.++.+++++.++++.|.+++ ++||+|++|+++|+||.+|+++.+
T Consensus 92 m~~--~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~dil~~l 140 (156)
T 3ctu_A 92 TKT--DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAV 140 (156)
T ss_dssp CBC--SCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHHHHHH
T ss_pred ccC--CceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHHHHHH
Confidence 999 8999999999999999999886 799999889999999999999864
No 77
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.35 E-value=1.4e-12 Score=94.23 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=91.9
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..+|.+.+.+++.++++|++ +.++.|++ +..|.. +.+... ......+++++|.
T Consensus 10 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd------------~~~~~G~i-t~~dl~--~~~~~~--~~~~~~~v~~~m~ 72 (125)
T 1pbj_A 10 DVDTIDITASLEDVLRNYVENAKGSSVVVK------------EGVRVGIV-TTWDVL--EAIAEG--DDLAEVKVWEVME 72 (125)
T ss_dssp SCCEEETTCBHHHHHHHHHHHCCCEEEEEE------------TTEEEEEE-EHHHHH--HHHHHT--CCTTTSBHHHHCB
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEEe------------CCeeEEEE-eHHHHH--HHHhcC--CcccccCHHHHcC
Confidence 577899999999999999999999999994 34566777 777731 222221 1234568999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ ++.++++++++.++++.|.+++.+++||+|+ |+++|+||.+|+++.+
T Consensus 73 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l 120 (125)
T 1pbj_A 73 R--DLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAK 120 (125)
T ss_dssp C--GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHH
T ss_pred C--CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 9 8999999999999999999999999999997 9999999999999864
No 78
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.35 E-value=2.5e-12 Score=85.23 Aligned_cols=69 Identities=28% Similarity=0.426 Sum_probs=56.7
Q ss_pred ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhhh
Q 028558 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (207)
Q Consensus 95 ~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (207)
++++.+++++.+|+++|.+++++++||+| +|+++||||.+|+++.....+. ..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~--------------------------~~ 54 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK--------------------------NP 54 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC--------------------------CG
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC--------------------------Cc
Confidence 68999999999999999999999999998 6899999999999865422111 12
Q ss_pred cCCcccccccCCCeEe
Q 028558 175 NGKMVGDLMTPAPVVV 190 (207)
Q Consensus 175 ~~~~v~~im~~~~~~v 190 (207)
.+.+++++|+++++++
T Consensus 55 ~~~~V~~iMt~~~iTV 70 (70)
T 3ghd_A 55 KEVKVEEIMTKNPVKI 70 (70)
T ss_dssp GGCBGGGTCEECTTCC
T ss_pred ccCCHHHhcCCCCeEC
Confidence 3568999999988764
No 79
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=98.01 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=82.1
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC--CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~--~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
....+|+++|++ ++.++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|+.+........
T Consensus 10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~---------- 77 (164)
T 2pfi_A 10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS---------- 77 (164)
T ss_dssp CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC--------------
T ss_pred ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc----------
Confidence 445789999999 8999999999999999999999999999996 78999999999998754211000
Q ss_pred cchhhhHHHHHHHHhhhcCCcccccccCC------CeEecCCCCHHHHHHHHhhcC
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMTPA------PVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~------~~~v~~~~~l~e~l~~m~~~g 207 (207)
. ......++.++|.++ ++++++++++.+++++|.+++
T Consensus 78 ------------~-~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~ 120 (164)
T 2pfi_A 78 ------------R-APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLN 120 (164)
T ss_dssp ----------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTT
T ss_pred ------------c-CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhC
Confidence 0 001234677777765 789999999999999998764
No 80
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.34 E-value=1.9e-12 Score=97.69 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=82.0
Q ss_pred cccccccccc----CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 83 YTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 83 ~~v~~vm~~~----~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
.+|+++|++. .++.++++++++.+|++.|.+++++++||++ +|+++|+||.+|+++.....+.
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~------------ 73 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER------------ 73 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC------------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC------------
Confidence 4699999963 2679999999999999999999999999966 7999999999999976422110
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.++++++++++++.+++++|.+++
T Consensus 74 --------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~ 108 (157)
T 4fry_A 74 --------------SSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHR 108 (157)
T ss_dssp --------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred --------------CccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcC
Confidence 01356799999999999999999999999998764
No 81
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.34 E-value=2e-12 Score=100.38 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=94.2
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++.++.+..+|.+.+.++++++++|++ +..++.+++ +..|... .+... .......+++++|.
T Consensus 18 ~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd-----------~~g~~vGiv-t~~dl~~-~~~~~--~~~~~~~~v~~im~ 82 (184)
T 1pvm_A 18 NFKTVNWNTTVFDAVKIMNENHLYGLVVKD-----------DNGNDVGLL-SERSIIK-RFIPR--NKKPDEVPIRLVMR 82 (184)
T ss_dssp TCCEEETTCBHHHHHHHHHHHTCCEEEEEC-----------TTSCEEEEE-EHHHHHH-HTGGG--CCCGGGSBGGGTSB
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEE-eHHHHHH-HHhhc--ccCcccCCHHHHhC
Confidence 577899999999999999999999999996 456778888 7777311 11110 11234568999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++.+
T Consensus 83 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 131 (184)
T 1pvm_A 83 K--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL 131 (184)
T ss_dssp S--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred C--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 9 899999999999999999999999999999889999999999999753
No 82
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.33 E-value=2.6e-12 Score=95.02 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=78.3
Q ss_pred ccccc---cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccc
Q 028558 83 YTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159 (207)
Q Consensus 83 ~~v~~---vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
.++++ +|.+ ++.++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+++.......
T Consensus 8 ~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~------------- 72 (144)
T 2nyc_A 8 IPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY------------- 72 (144)
T ss_dssp SBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC---------------
T ss_pred cchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccc-------------
Confidence 35677 8888 89999999999999999999999999999988999999999999875421000
Q ss_pred hhhhHHHHHHHHhhhcCCcccccccC------CCeEecCCCCHHHHHHHHhhcC
Q 028558 160 TWKTFNEVQKLLSKTNGKMVGDLMTP------APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|.+ +++++++++++.+++++|.+++
T Consensus 73 -------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~ 113 (144)
T 2nyc_A 73 -------------NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 113 (144)
T ss_dssp ---------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHT
T ss_pred -------------ccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCC
Confidence 0134678888875 6789999999999999998753
No 83
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.33 E-value=2.3e-12 Score=99.46 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=92.8
Q ss_pred ccccc--cCCCCCCcccccccccCCCEEEee--CCCCcccccccccCCceeeeecccchhhhhhhhhhcc----------
Q 028558 11 SVARL--RAPPAGRTSGRTSFALQLPCLLLS--RPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA---------- 76 (207)
Q Consensus 11 ~~~~~--~~~~~~~~~~~~~~~~~v~~livt--~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~---------- 76 (207)
|++++ +++.+..+|.+.+.++++++++|+ + +..++.|++ +..|... .+.....
T Consensus 24 ~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d-----------~~~~lvGii-t~~dl~~-~~~~~~~~~~~~~~~~~ 90 (185)
T 2j9l_A 24 PLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR-----------ESQRLVGFV-LRRDLII-SIENARKKQDGVVSTSI 90 (185)
T ss_dssp CCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT-----------TTCBEEEEE-EHHHHHH-HHHHHHTSCSCCCTTCE
T ss_pred ceEEEecCCCccHHHHHHHHHhcCCCceeEEEEC-----------CCCeEEEEE-EHHHHHH-HHHhhcccCCCccccce
Confidence 36788 999999999999999999999999 5 566777888 7777211 1111000
Q ss_pred -----------CCCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 77 -----------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 77 -----------~~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.......+++++|.+ ++.++++++++.++++.|.+++.+++||+| +|+++|+||.+|+++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l 163 (185)
T 2j9l_A 91 IYFTEHSPPLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHI 163 (185)
T ss_dssp EECSSSCCCCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred eecccCCcccccccccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 011345689999998 899999999999999999999999999999 89999999999999865
No 84
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.33 E-value=1.9e-12 Score=98.31 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=92.7
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhcc------CCCCCccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSA------APSSGVYT 84 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~------~~~~~~~~ 84 (207)
++++++++.+..+|.+.+.++++++++|++ ++.++.|++ +..|... .+. ... .......+
T Consensus 14 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd-----------~~~~lvGiv-t~~dl~~-~~~-~~~~~~~~~~~~~~~~~ 79 (160)
T 2o16_A 14 HPHTLLRTHTLNDAKHLMEALDIRHVPIVD-----------ANKKLLGIV-SQRDLLA-AQE-SSLQRSAQGDSLAFETP 79 (160)
T ss_dssp SCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHHHH-HHH-HHCC---------CCCB
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEc-----------CCCcEEEEE-eHHHHHH-HHH-HhhcccccccchhcccC
Confidence 577899999999999999999999999996 556778888 7777311 111 100 01233568
Q ss_pred ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++++|.+ ++.++++++++.++++.|.+++.+.+||+|+ |+++|+||.+||++.+
T Consensus 80 v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~ 133 (160)
T 2o16_A 80 LFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIA 133 (160)
T ss_dssp HHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHH
T ss_pred HHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence 9999999 8999999999999999999999999999997 9999999999999854
No 85
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.33 E-value=2.5e-12 Score=107.19 Aligned_cols=93 Identities=27% Similarity=0.364 Sum_probs=83.7
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHc-----CCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCC
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF 154 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~-----~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~ 154 (207)
....+|+++|++ +++++++++++.++++.|.++ +++++||+|++|+++|+||.+|++...
T Consensus 134 ~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~------------- 198 (286)
T 2oux_A 134 YEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND------------- 198 (286)
T ss_dssp SCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC-------------
T ss_pred CChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC-------------
Confidence 456789999999 999999999999999999987 889999999889999999999998631
Q ss_pred CcccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 155 PEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
...++.++|.++++++++++++.+++++|.+++
T Consensus 199 --------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~ 231 (286)
T 2oux_A 199 --------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYD 231 (286)
T ss_dssp --------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHT
T ss_pred --------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcC
Confidence 346799999999999999999999999998764
No 86
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.33 E-value=1.8e-12 Score=95.41 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=92.2
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..+|.+.+.+++.++++|++ ++.++.|++ +..|.. .+.+.. ......+++++|.
T Consensus 17 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~-~~~~~~---~~~~~~~v~~~m~ 80 (138)
T 2p9m_A 17 NVITAKRHEGVVEAFEKMLKYKISSLPVID-----------DENKVIGIV-TTTDIG-YNLIRD---KYTLETTIGDVMT 80 (138)
T ss_dssp SCCCEETTSBHHHHHHHHHHHTCCEEEEEC-----------TTCBEEEEE-EHHHHH-HHHTTT---CCCSSCBHHHHSC
T ss_pred CceEECCCCcHHHHHHHHHHCCCcEEEEEC-----------CCCeEEEEE-EHHHHH-HHHHhh---cccCCcCHHHHhC
Confidence 677899999999999999999999999996 456677887 666530 111111 1234568999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcC-----CCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~-----~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ ++.++++++++.++++.|.+++ .+++||+|++|+++|+||.+|+++..
T Consensus 81 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 134 (138)
T 2p9m_A 81 K--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI 134 (138)
T ss_dssp S--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred C--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHH
Confidence 9 8999999999999999999999 99999999889999999999999753
No 87
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.32 E-value=2.2e-12 Score=94.49 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=91.5
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
++++++++.+..+|.+.+.+++.++++|++ +.++.|++ +..|.. +.+... .....+++++|.
T Consensus 13 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd------------~~~~~Giv-t~~dl~--~~~~~~---~~~~~~v~~~~~ 74 (133)
T 2ef7_A 13 QVISVTKDAKLNDIAKVMTEKNIGSVIVVD------------GNKPVGII-TERDIV--KAIGKG---KSLETKAEEFMT 74 (133)
T ss_dssp SCCEEETTCBHHHHHHHHHHHTCSEEEEEE------------TTEEEEEE-EHHHHH--HHHHTT---CCTTCBGGGTSE
T ss_pred CCEEECCCCcHHHHHHHHHhcCCCEEEEEE------------CCEEEEEE-cHHHHH--HHHhcC---CCcccCHHHHcC
Confidence 467899999999999999999999999994 34566777 766631 222221 123468999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+ ++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++..
T Consensus 75 ~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 123 (133)
T 2ef7_A 75 A--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123 (133)
T ss_dssp E--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred C--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence 8 899999999999999999999999999999889999999999999754
No 88
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.32 E-value=2.2e-12 Score=95.36 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=92.1
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
.++++++++.+..+|.+.+.+++++++.|++ +..++.|++ +..|... .+.... ......+++++|
T Consensus 19 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-----------~~~~~~Giv-t~~dl~~--~~~~~~-~~~~~~~v~~~m 83 (144)
T 2nyc_A 19 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-----------ENGYLINVY-EAYDVLG--LIKGGI-YNDLSLSVGEAL 83 (144)
T ss_dssp SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-----------TTCBEEEEE-EHHHHHH--HHHTC-----CCSBHHHHH
T ss_pred CCceEECCCCcHHHHHHHHHHcCcceeeEEc-----------CCCcEEEEE-cHHHHHH--Hhcccc-cccCCccHHHHH
Confidence 4677899999999999999999999999996 556778888 7777311 111110 112346899999
Q ss_pred ccc----CCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~----~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+. .++.++++++++.++++.|.+++.+++||+|++|+++|+||.+|+++.+
T Consensus 84 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l 139 (144)
T 2nyc_A 84 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139 (144)
T ss_dssp HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred hcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHH
Confidence 862 1478999999999999999999999999999889999999999999754
No 89
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.32 E-value=6.8e-12 Score=103.95 Aligned_cols=91 Identities=31% Similarity=0.383 Sum_probs=82.2
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHc-----CCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCc
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE 156 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~-----~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~ 156 (207)
..+++++|++ +++++++++++.++++.|.++ ++.++||+|++|+++|+||.+|++..
T Consensus 134 ~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---------------- 195 (278)
T 2yvy_A 134 EDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------- 195 (278)
T ss_dssp TTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS----------------
T ss_pred cchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC----------------
Confidence 4589999999 999999999999999999987 78999999988999999999999863
Q ss_pred ccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 157 VDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|.++++++++++++.+++++|.+++
T Consensus 196 -----------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~ 229 (278)
T 2yvy_A 196 -----------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYD 229 (278)
T ss_dssp -----------------CTTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHT
T ss_pred -----------------CCCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcC
Confidence 1346799999989999999999999999998764
No 90
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.31 E-value=3.8e-12 Score=95.76 Aligned_cols=114 Identities=12% Similarity=0.120 Sum_probs=91.4
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh-ccC-CCCCccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN-SAA-PSSGVYTVGDF 88 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~-~~~-~~~~~~~v~~v 88 (207)
+++++.++.+..+|.+.+.++++++++|++ +..++.|++ +..|... .+... ... ......+++++
T Consensus 22 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd-----------~~~~~~Giv-t~~dl~~-~~~~~~~~~~~~~~~~~v~~~ 88 (157)
T 2emq_A 22 KVAHVQPGNYLDHALLVLTKTGYSAIPVLD-----------TSYKLHGLI-SMTMMMD-AILGLERIEFERLETMKVEEV 88 (157)
T ss_dssp GSCCBCTTSBHHHHHHHHHHSSSSEEEEEC-----------TTCCEEEEE-EHHHHHH-HSBCSSSBCGGGGGTCBGGGT
T ss_pred cceEECCCCcHHHHHHHHHHCCceEEEEEc-----------CCCCEEEEe-eHHHHHH-HHhcccccchHHhcCCcHHHH
Confidence 677899999999999999999999999996 556777888 7777311 11100 000 01234579999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|.+ ++.++++++++.++++.|.++++ +||+|++|+++|+||.+|+++.+
T Consensus 89 m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~ 137 (157)
T 2emq_A 89 MNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQL 137 (157)
T ss_dssp CBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHH
T ss_pred hCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHH
Confidence 999 99999999999999999999987 99999889999999999999864
No 91
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.30 E-value=7.3e-12 Score=94.11 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=80.0
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
+.++++++ + ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.......
T Consensus 21 ~~~~v~~~--~--~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~-------------- 82 (152)
T 2uv4_A 21 EELQIGTY--A--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY-------------- 82 (152)
T ss_dssp HHHTCSBC--S--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSC--------------
T ss_pred HHccCCcc--C--CceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhh--------------
Confidence 44578888 5 79999999999999999999999999999988999999999999875421110
Q ss_pred hhhHHHHHHHHhhhcCCccccccc------CCCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMT------PAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~------~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|. ++++++++++++.+++++|.+++
T Consensus 83 ------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 123 (152)
T 2uv4_A 83 ------------NNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAE 123 (152)
T ss_dssp ------------CCTTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHT
T ss_pred ------------hhhcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcC
Confidence 012456888886 78899999999999999998754
No 92
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.30 E-value=9.8e-12 Score=101.93 Aligned_cols=60 Identities=23% Similarity=0.391 Sum_probs=54.8
Q ss_pred CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC--CcEEEEEehhhHHhhh
Q 028558 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD 141 (207)
Q Consensus 80 ~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~--g~lvGiVt~~dl~~~~ 141 (207)
...++|+++|++ +++++.+++++.++.++|.++++++|||||++ ++++|+|+++||++++
T Consensus 10 ~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l 71 (250)
T 2d4z_A 10 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLL 71 (250)
T ss_dssp CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHH
T ss_pred cCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHH
Confidence 456789999999 99999999999999999999999999999963 6899999999998754
No 93
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.30 E-value=4.8e-12 Score=113.89 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=85.2
Q ss_pred CcccccccccccCCceEECCC-CCHHHHHHHHHHcCCCEeEEEc-CCCcEEEEEehhhHHhhhcccCCCCCCCCCCCccc
Q 028558 81 GVYTVGDFMTTKEELHVVKPT-TTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVD 158 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~-~~v~ea~~~m~~~~~~~lpVvd-~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~ 158 (207)
...+|+++|++ +++++.++ +++.+++++|.+++++++||+| ++|+++|+||.+||++.+...
T Consensus 382 ~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~-------------- 445 (527)
T 3pc3_A 382 WSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM-------------- 445 (527)
T ss_dssp TTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH--------------
T ss_pred cCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc--------------
Confidence 36789999999 99999999 9999999999999999999999 789999999999999754110
Q ss_pred chhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 159 STWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
......++.++|+++++++++++++.+++++|.+++
T Consensus 446 -------------~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~ 481 (527)
T 3pc3_A 446 -------------NRQQSDPAIKALNKRVIRLNESEILGKLARVLEVDP 481 (527)
T ss_dssp -------------CCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCS
T ss_pred -------------cCcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCC
Confidence 012356899999999999999999999999997753
No 94
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.30 E-value=4e-12 Score=107.04 Aligned_cols=164 Identities=14% Similarity=0.105 Sum_probs=118.1
Q ss_pred cccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhh-c---cCC---
Q 028558 6 LPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTAN-S---AAP--- 78 (207)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~-~---~~~--- 78 (207)
..+..++++++++.+..+|.+.+.+++++++.|++ .+..++.|++ +..|... .+... . ...
T Consensus 28 m~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d----------~~~~~~vGiv-~~~Dl~~-~~~~~~~~~~~~~~~~ 95 (334)
T 2qrd_G 28 LPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD----------SEANKFAGLL-TMADFVN-VIKYYYQSSSFPEAIA 95 (334)
T ss_dssp SCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEE----------TTTTEEEEEE-CHHHHHH-HHHHHHHHCSCGGGGG
T ss_pred CCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEe----------CCCCeEEEEE-EHHHHHH-HHHHHhhccCCccHHH
Confidence 44566788999999999999999999999999985 1235788888 8888311 11100 0 000
Q ss_pred CCCccccc-------ccccccCCc--eEECCCCCHHHHHHHHHHcCCCEeEEEcCCC-c----EEEEEehhhHHhhhccc
Q 028558 79 SSGVYTVG-------DFMTTKEEL--HVVKPTTTVDEALEILVEKRITGFPVIDDDW-K----LVGLVSDYDLLALDSIS 144 (207)
Q Consensus 79 ~~~~~~v~-------~vm~~~~~~--~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g-~----lvGiVt~~dl~~~~~~~ 144 (207)
.....+++ ++|.+ ++ +++.+++++.++++.|.+++++++||+|++| + ++|+||.+|+++.....
T Consensus 96 ~~~~~~~~~i~~~l~~im~~--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~ 173 (334)
T 2qrd_G 96 EIDKFRLLGLREVERKIGAI--PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN 173 (334)
T ss_dssp GGGSCBHHHHHHHHHHHTCS--CSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHH
T ss_pred HHhhhchhhHHHHHHhhccC--CCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhh
Confidence 00022232 34666 55 9999999999999999999999999998765 4 99999999999754210
Q ss_pred CCCCCCCCCCCcccchhhhHHHHHHHHhhhcCCcccc---cccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 145 GSGRADNSMFPEVDSTWKTFNEVQKLLSKTNGKMVGD---LMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.. . ......++.+ +|.++++++++++++.+++++|.+++
T Consensus 174 ~~----------------------~--~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~ 215 (334)
T 2qrd_G 174 CK----------------------E--TAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKN 215 (334)
T ss_dssp CG----------------------G--GGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred cc----------------------c--hhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcC
Confidence 00 0 0112456777 58889999999999999999998753
No 95
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.29 E-value=3.6e-12 Score=96.40 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=90.9
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc--CCceeeeecccchhhhhhhhhhccC--CCCCccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS--SDRVSALRRSSAVFASGTLTANSAA--PSSGVYTVG 86 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~--~~~~~~~~~s~~d~~~~~~~~~~~~--~~~~~~~v~ 86 (207)
+++++.++.+..+|.+.|.++++++++|++ + ..++.|++ +..|.. +.+..... ......++.
T Consensus 22 ~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd-----------~~~~~~~~Giv-t~~dl~--~~~~~~~~~~~~~~~~~v~ 87 (164)
T 2pfi_A 22 SITTLAKDTPLEEVVKVVTSTDVTEYPLVE-----------STESQILVGIV-QRAQLV--QALQAEPPSRAPGHQQCLQ 87 (164)
T ss_dssp CCCCEETTCBHHHHHHHHHTCCCSEEEEES-----------CTTTCBEEEEE-EHHHHH--HHHHC-------CCCCBHH
T ss_pred CCeEECCCCcHHHHHHHHHhCCCCceeEEe-----------cCCCCEEEEEE-EHHHHH--HHHHhhccccCCcccchhh
Confidence 577899999999999999999999999996 3 46677888 777731 11111100 011245789
Q ss_pred ccccccCC------ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 87 DFMTTKEE------LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 87 ~vm~~~~~------~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++|.+ + +.++.+++++.++++.|.+++.+++||+| +|+++|+||.+|+++.+
T Consensus 88 ~~m~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~ 145 (164)
T 2pfi_A 88 DILAR--GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAI 145 (164)
T ss_dssp HHHHT--TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred hhhcc--cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 99988 6 78999999999999999999999999999 79999999999999864
No 96
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.29 E-value=5e-12 Score=97.79 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=89.7
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC-CceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS-DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~-~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
..+++++++.+..+|.+.|.++++++++|++ .. .++.|++ +..|... .+... ...+++
T Consensus 46 ~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd-----------~~~~~lvGiv-t~~Dl~~--~~~~~-----~~~~v~-- 104 (173)
T 3ocm_A 46 TDVSWVNIDDDAATIRQQLTAAPHSFFPVCR-----------GSLDEVVGIG-RAKDLVA--DLITE-----GRVRRN-- 104 (173)
T ss_dssp GGCCCEETTSCHHHHHHHHHHSSCSEEEEES-----------SSTTSEEEEE-EHHHHHH--HHHHH-----SSCCGG--
T ss_pred HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEe-----------CCCCCEEEEE-EHHHHHH--HHhcC-----CcchhH--
Confidence 4577999999999999999999999999996 43 6788888 7777311 11111 124577
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|.+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.+
T Consensus 105 ~~~--~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l 155 (173)
T 3ocm_A 105 RLR--DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAI 155 (173)
T ss_dssp GSB--CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHH
T ss_pred hcC--CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHH
Confidence 556 689999999999999999999999999999889999999999999865
No 97
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.28 E-value=8.7e-12 Score=101.02 Aligned_cols=58 Identities=22% Similarity=0.396 Sum_probs=54.5
Q ss_pred cccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 82 ~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
..+|+++|++ ++.++.+++++.+|++.|.+++++++||+|++|+++|+||..|+++..
T Consensus 6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~ 63 (245)
T 3l2b_A 6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATY 63 (245)
T ss_dssp CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence 3479999999 899999999999999999999999999999889999999999999865
No 98
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.26 E-value=4.8e-12 Score=95.65 Aligned_cols=115 Identities=12% Similarity=0.167 Sum_probs=91.7
Q ss_pred ccccccCCCCCCcccccccccCCCE-EEeeCCCCcccccccccCCceeeeecccchhhhhhh------hhhc-----cCC
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPC-LLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTL------TANS-----AAP 78 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~-livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~------~~~~-----~~~ 78 (207)
++++++++.+..+|.+.+.++++++ ++|++ ++ ++.|++ +..|....-. +... ...
T Consensus 25 ~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd-----------~~-~~vGiv-t~~dl~~~~~~~~~~~~~~~~~~~~~~~ 91 (157)
T 1o50_A 25 KPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-----------DN-KLVGMI-PVMHLLKVSGFHFFGFIPKEELIRSSMK 91 (157)
T ss_dssp CCEEECTTCBHHHHHHHHHHSTTCCEEEEEE-----------TT-EEEEEE-EHHHHHHHHHHHHHCCCC-------CCC
T ss_pred CCceECCCCCHHHHHHHHHhCCCCccEEEEE-----------CC-EEEEEE-EHHHHHHHHhhhHHhhhccHHHHHHHHH
Confidence 5778999999999999999999999 99986 44 777888 7777311100 0000 001
Q ss_pred CCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 79 ~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.....+++++|.+ +.++++++++.++++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus 92 ~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l 151 (157)
T 1o50_A 92 RLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL 151 (157)
T ss_dssp CCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred HHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHH
Confidence 2345689999997 78999999999999999999999999999889999999999999754
No 99
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.24 E-value=6.2e-12 Score=95.09 Aligned_cols=114 Identities=11% Similarity=0.104 Sum_probs=91.1
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhh-hcc-CCCCCccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTA-NSA-APSSGVYTVGDF 88 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~-~~~-~~~~~~~~v~~v 88 (207)
+++++.++.+..+|.+.+.++++++++|++ +..++.|++ +..|... .... ..+ .......+++++
T Consensus 25 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-----------~~~~lvGiv-t~~dl~~-~~~~~~~~~~~~~~~~~v~~~ 91 (159)
T 1yav_A 25 KVAHVQVGNNLEHALLVLTKTGYTAIPVLD-----------PSYRLHGLI-GTNMIMN-SIFGLERIEFEKLDQITVEEV 91 (159)
T ss_dssp GSCCEETTCBHHHHHHHHHHHCCSEEEEEC-----------TTCBEEEEE-EHHHHHH-HHBCSSSBCGGGTTTSBHHHH
T ss_pred ceEEECCCCcHHHHHHHHHhCCCcEEEEEC-----------CCCCEEEEe-EHHHHHH-HhhhhcccchhhhccCCHHHh
Confidence 477899999999999999999999999996 556777888 7777311 1110 000 001345689999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
|.+ ++.++.+++++.++++.|.++++ +||+|++|+++|+||.+|+++.+
T Consensus 92 m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~ 140 (159)
T 1yav_A 92 MLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKEL 140 (159)
T ss_dssp SBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHH
T ss_pred cCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHH
Confidence 999 89999999999999999998876 99999889999999999999864
No 100
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.24 E-value=5.4e-12 Score=115.89 Aligned_cols=126 Identities=14% Similarity=0.067 Sum_probs=83.3
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHH-HcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCC---CCc
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM---FPE 156 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~-~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~---~~~ 156 (207)
..++|+++|++++++.++++++++.|+.+.|. +++++.+||+|++|+++|+||++|+++.............. ...
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~ 530 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV 530 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence 56799999995448999999999999999999 79999999999889999999999999865321100000000 000
Q ss_pred ccchhhhHH-HHHHHHhh-----------------hcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 157 VDSTWKTFN-EVQKLLSK-----------------TNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~-----------------~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.. .+..+. .+...... ....++.++|+++++++++++++.+++++|.+++
T Consensus 531 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~ 598 (632)
T 3org_A 531 LL-DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLM 598 (632)
T ss_dssp -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTC
T ss_pred cc-CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcC
Confidence 00 000000 00000000 1112488999999999999999999999999874
No 101
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.22 E-value=1.3e-11 Score=102.87 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=92.3
Q ss_pred cccccccCCCCCCccccccccc-----CCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFAL-----QLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYT 84 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-----~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~ 84 (207)
..+++++++.+..+|.+.+.++ +++++.|++ ..+++.|++ +..|.... ....+
T Consensus 145 ~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd-----------~~~~lvGiv-t~~dll~~----------~~~~~ 202 (286)
T 2oux_A 145 TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD-----------QENHLVGVI-SLRDLIVN----------DDDTL 202 (286)
T ss_dssp SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEEC-----------TTCBEEEEE-EHHHHTTS----------CTTSB
T ss_pred CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEc-----------CCCeEEEEE-EHHHHHcC----------CCCCc
Confidence 3678999999999999999987 888899996 566788888 66662111 23457
Q ss_pred ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++++|.+ +++++++++++.++++.|.+++++++||+|++|+++|+||..|+++.+
T Consensus 203 v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i 257 (286)
T 2oux_A 203 IADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVI 257 (286)
T ss_dssp HHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred HHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 9999999 899999999999999999999999999999889999999999999854
No 102
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.19 E-value=4e-11 Score=106.66 Aligned_cols=92 Identities=30% Similarity=0.376 Sum_probs=82.5
Q ss_pred CcccccccccccCCceEECCCCCHHHHHHHHHHc-----CCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCC
Q 028558 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP 155 (207)
Q Consensus 81 ~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~-----~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~ 155 (207)
...+++++|++ +++++++++++.++++.|.++ +++++||+|++++++|+||.+|++..
T Consensus 153 ~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~--------------- 215 (473)
T 2zy9_A 153 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------- 215 (473)
T ss_dssp CTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---------------
T ss_pred CCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---------------
Confidence 45689999999 999999999999999999986 57899999988999999999999863
Q ss_pred cccchhhhHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhcC
Q 028558 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~g 207 (207)
..+.++.++|+++++++++++++++++++|.+++
T Consensus 216 ------------------~~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~ 249 (473)
T 2zy9_A 216 ------------------DPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYD 249 (473)
T ss_dssp ------------------CTTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHT
T ss_pred ------------------CCCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcC
Confidence 1356899999989999999999999999998864
No 103
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.18 E-value=2.8e-11 Score=100.23 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=91.6
Q ss_pred ccccccCCCCCCccccccccc-----CCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccc
Q 028558 11 SVARLRAPPAGRTSGRTSFAL-----QLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTV 85 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-----~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v 85 (207)
.+++++++.+..+|.+.+.++ ++.++.|++ +.+++.|++ +..|... . ....++
T Consensus 144 ~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd-----------~~~~lvGiv-t~~dll~-----~-----~~~~~v 201 (278)
T 2yvy_A 144 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD-----------EKGRLKGVL-SLRDLIV-----A-----DPRTRV 201 (278)
T ss_dssp CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEEC-----------TTCBEEEEE-EHHHHHH-----S-----CTTCBS
T ss_pred CceEECCCCcHHHHHHHHHHccCCccceeEEEEEC-----------CCCCEEEEE-EHHHHhc-----C-----CCCCcH
Confidence 678899999999999999887 789999996 566788888 6666211 1 124579
Q ss_pred cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+++|.+ +++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+
T Consensus 202 ~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i 255 (278)
T 2yvy_A 202 AEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 255 (278)
T ss_dssp TTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC
T ss_pred HHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHH
Confidence 999998 899999999999999999999999999999889999999999999864
No 104
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.15 E-value=1.2e-10 Score=104.43 Aligned_cols=161 Identities=16% Similarity=0.248 Sum_probs=108.3
Q ss_pred CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA 77 (207)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~ 77 (207)
|-+.+|+-..+. +.+.+...-....+..++|.+--.. ......++ .++...+.++. .... ......+..-
T Consensus 39 d~~~~p~~~~~~--~~~~~~~t~lt~~i~l~iPivsa~M-dtvTe~~lAia~a~~GgiGvIh-~~~~~~~q~~~V~~V-- 112 (511)
T 3usb_A 39 DVLLVPAKSDVL--PREVSVKTVLSESLQLNIPLISAGM-DTVTEADMAIAMARQGGLGIIH-KNMSIEQQAEQVDKV-- 112 (511)
T ss_dssp GEEECCCCCCCC--TTTSBCCEEEETTEEESSSEEECSC-TTTCSHHHHHHHHHHTCEEEEC-SSSCHHHHHHHHHHH--
T ss_pred EEEEECCccccc--ccceEeeeEeecccccCCCccccCc-hhhcHHHHHHHHHhcCCceeec-ccCCHHHHHHHHHHh--
Confidence 445667665542 3334554545556677777443322 22222223 23344443333 2222 1111112211
Q ss_pred CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC--CCcEEEEEehhhHHhhhcccCCCCCCCCCCC
Q 028558 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISGSGRADNSMFP 155 (207)
Q Consensus 78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~--~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~ 155 (207)
++.+++|.+ +++++++++++.+++++|.+++++.+||+|+ +++++|+||.+|++..
T Consensus 113 -----~~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~--------------- 170 (511)
T 3usb_A 113 -----KRSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI--------------- 170 (511)
T ss_dssp -----HTSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---------------
T ss_pred -----hcccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---------------
Confidence 235677888 8999999999999999999999999999998 8999999999999752
Q ss_pred cccchhhhHHHHHHHHhhhcCCcccccccC-CCeEecCCCCHHHHHHHHhhcC
Q 028558 156 EVDSTWKTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|++ +++++++++++.+++++|.+++
T Consensus 171 -----------------~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~ 206 (511)
T 3usb_A 171 -----------------QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYK 206 (511)
T ss_dssp -----------------CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHT
T ss_pred -----------------ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcC
Confidence 1135679999997 8999999999999999998764
No 105
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.13 E-value=3.4e-11 Score=107.69 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=103.0
Q ss_pred CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA 77 (207)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~ 77 (207)
|-+.+|+-..+. +.+.+.....-..+..++|.+--.. ......++ .+....+.++. .+.. ......+..-
T Consensus 15 d~~~~p~~~~~~--~~~~~~~t~lt~~i~l~iPivsa~M-dtVTe~~ma~a~a~~GGiGvI~-~n~s~e~qa~~V~~V-- 88 (496)
T 4fxs_A 15 DVLLVPAHSTVL--PNTADLRTRLTKNIALNIPMVSASM-DTVTEARLAIALAQEGGIGFIH-KNMSIEQQAAQVHQV-- 88 (496)
T ss_dssp GEEECCCCCCCC--GGGCBCCEEEETTEEESSSEEECCC-TTTCSHHHHHHHHHHTCEEEEC-SSSCHHHHHHHHHHH--
T ss_pred cEEEecCccccc--cccccccceeccccccCCCceecCc-chhhHHHHHHHHHHcCCcceec-CCCCHHHHHHHHHhc--
Confidence 345566655542 2234444444456677788554333 22233333 33444555554 3333 2222333322
Q ss_pred CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
.+++++|++ +++++++++++.+++++|.+++++.+||+|++++++|+||.+||+...
T Consensus 89 -----k~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~---------------- 145 (496)
T 4fxs_A 89 -----KIFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVT---------------- 145 (496)
T ss_dssp -----HHCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCC----------------
T ss_pred -----ccccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcc----------------
Confidence 246789998 999999999999999999999999999999889999999999997421
Q ss_pred cchhhhHHHHHHHHhhhcCCccccccc-C-CCeEecCCCCHHHHHHHHhhcC
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|+ + +++++++++++.+++++|.+++
T Consensus 146 ----------------~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~ 181 (496)
T 4fxs_A 146 ----------------DLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKAR 181 (496)
T ss_dssp ----------------CTTSBGGGTSEEGGGCCEEECC----CGGGTCC---
T ss_pred ----------------cCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcC
Confidence 13567999998 4 5899999999999999998763
No 106
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=99.12 E-value=1.9e-10 Score=75.02 Aligned_cols=68 Identities=28% Similarity=0.417 Sum_probs=55.6
Q ss_pred ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhHHHHHHHHhhh
Q 028558 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTFNEVQKLLSKT 174 (207)
Q Consensus 95 ~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (207)
+.++++++++.++++.|.+++++++||+|+ |+++|+||.+|+++.....+. ..
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~~~--------------------------~~ 54 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAKGK--------------------------NP 54 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTTTC--------------------------CG
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHcCC--------------------------Cc
Confidence 578999999999999999999999999996 999999999999986422110 01
Q ss_pred cCCcccccccCCCeE
Q 028558 175 NGKMVGDLMTPAPVV 189 (207)
Q Consensus 175 ~~~~v~~im~~~~~~ 189 (207)
...++.++|++++++
T Consensus 55 ~~~~v~~im~~~~~~ 69 (70)
T 3fio_A 55 KEVKVEEIMTKNPVK 69 (70)
T ss_dssp GGCBGGGTCEECTTC
T ss_pred ccCCHHHhcCCCCeE
Confidence 356799999877654
No 107
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.11 E-value=2.1e-10 Score=102.82 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=95.1
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc--CCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS--SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~--~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
.+++++++.+..++.+.+.+++++.+.|++ + ..++.+++ +..|... ......+++++
T Consensus 122 d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd-----------~g~~~~lvGiV-t~rDl~~---------~~~~~~~V~~v 180 (511)
T 3usb_A 122 DPFFLTPEHQVYDAEHLMGKYRISGVPVVN-----------NLDERKLVGII-TNRDMRF---------IQDYSIKISDV 180 (511)
T ss_dssp SCCCBCTTSBHHHHHHHHHHHCCSEEEEES-----------CTTTCBEEEEE-EHHHHTT---------CCCSSSBHHHH
T ss_pred CCEEECCCCCHHHHHHHHHHcCCcEEEEEe-----------cCCCCEEEEEE-EehHhhh---------hccCCCcHHHh
Confidence 467999999999999999999999999996 4 56788888 7777311 12235689999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~ 143 (207)
|++ +++++++++.++.+++++|.+++++.+||+|++|+++|+||.+|+++....
T Consensus 181 M~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 181 MTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp CCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred ccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence 996 368999999999999999999999999999999999999999999987643
No 108
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.07 E-value=2.6e-11 Score=108.66 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=0.0
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccC---CceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS---DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~---~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~ 87 (207)
.+++++++.+..+|.+.|.+++++.+.|++ +. .++.+++ +..|.... ......++++
T Consensus 106 ~~~~v~~~~tv~eal~~m~~~~~s~~pVvd-----------~~~~~g~lvGiV-t~~Dl~~~--------~~~~~~~V~d 165 (503)
T 1me8_A 106 SDSNVKPDQTFADVLAISQRTTHNTVAVTD-----------DGTPHGVLLGLV-TQRDYPID--------LTQTETKVSD 165 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEECCCCcHHHHHHHHHHcCceEEEEEE-----------CCCcCCeEEEEE-EHHHHHhh--------hccccCcHHH
Confidence 577999999999999999999999999996 33 5677888 77773111 1123457999
Q ss_pred cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (207)
Q Consensus 88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~ 142 (207)
+|++.++++++++++++.+++++|.+++++.+||+|++|+++|+||.+||++...
T Consensus 166 iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 166 MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp -------------------------------------------------------
T ss_pred HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhh
Confidence 9999223999999999999999999999999999999999999999999998653
No 109
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.05 E-value=3.5e-10 Score=92.64 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=48.8
Q ss_pred ccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 87 ~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
.+|.+ .++++.+++++.++..+|...|++++||++ +|+++||||++||++++
T Consensus 193 ~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai 244 (250)
T 2d4z_A 193 CRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI 244 (250)
T ss_dssp SCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 36999 899999999999999999999999999998 69999999999999865
No 110
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.02 E-value=4.1e-11 Score=106.55 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=0.4
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
.+++.|+.+..+|.+.+-+++++.+.|+..|. ...++.+++ |.+|.-. .....+|+++|++
T Consensus 148 Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~--------~~~kLvGIv-T~RD~rf----------~d~~~~V~evMT~ 208 (556)
T 4af0_A 148 PLCLGPDATVGDVLEIKAKFGFCGVPITETGE--------PDSKLLGIV-TGRDVQF----------QDAETPIKSVMTT 208 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEcCCCCCHHHHHHHHHHhCCCccccccccC--------cCCEEEEEE-ecccccc----------cccceEhhhhccc
Confidence 45999999999999999999999999996111 145677888 8888311 1123479999999
Q ss_pred cCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558 92 KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (207)
Q Consensus 92 ~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~ 143 (207)
++++++.+.++.+|.++|.++++..+||+|++|+++|+||++|+.+...+
T Consensus 209 --~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~ 258 (556)
T 4af0_A 209 --EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNY 258 (556)
T ss_dssp ---------------------------------------------------C
T ss_pred --ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhC
Confidence 99999999999999999999999999999999999999999999986543
No 111
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.01 E-value=6.8e-11 Score=105.56 Aligned_cols=160 Identities=21% Similarity=0.248 Sum_probs=35.7
Q ss_pred CeeccccccccccccCCCCCCcccccccccCCCEEEeeCCCCcccccc---cccCCceeeeecccch-hhhhhhhhhccC
Q 028558 2 DSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVL---ATSSDRVSALRRSSAV-FASGTLTANSAA 77 (207)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~---~~~~~~~~~~~~s~~d-~~~~~~~~~~~~ 77 (207)
|-+.+|+-..+ .+.+.+........+..++|.+--.. ......++ .+....+.++. .... ......+..-
T Consensus 14 d~~~~p~~~~~--~~~~~~~~t~lt~~i~l~iPivsa~M-~tVTe~~lA~ala~~GGiGvI~-~~~~~e~~a~~v~~v-- 87 (490)
T 4avf_A 14 DVLLIPGYSEV--LPKDVSLKTRLTRGIELNIPLVSAAM-DTVTEARLAIAMAQEGGIGIIH-KNMGIEQQAAEVRKV-- 87 (490)
T ss_dssp GEEECCCCBCS--CGGGSCCCEEEETTEEESSSEEECSC-TTTCSHHHHHHHHHHTSEEEEC-CSSCHHHHHHHHHHH--
T ss_pred eEEEeCCCCcc--cccceeeecccccCcccCCCccccch-hhhCHHHHHHHHHHcCCCcccc-CCCCHHHHHHHhhhh--
Confidence 44556665544 22245555555667778888655443 33333333 23344444443 3333 2222332221
Q ss_pred CCCCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcc
Q 028558 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157 (207)
Q Consensus 78 ~~~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~ 157 (207)
.+++++|.+ +++++++++++.+++++|.+++++.+||+| +++++|+||.+|+....
T Consensus 88 -----k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~---------------- 143 (490)
T 4avf_A 88 -----KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKP---------------- 143 (490)
T ss_dssp -----HHCCC----------------------------------------------------------------------
T ss_pred -----cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhcc----------------
Confidence 257889998 999999999999999999999999999999 89999999999996421
Q ss_pred cchhhhHHHHHHHHhhhcCCccccccc-C-CCeEecCCCCHHHHHHHHhhcC
Q 028558 158 DSTWKTFNEVQKLLSKTNGKMVGDLMT-P-APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|+ + +++++++++++.+++++|.+++
T Consensus 144 ----------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~ 179 (490)
T 4avf_A 144 ----------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENR 179 (490)
T ss_dssp ----------------------------------------------------
T ss_pred ----------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcC
Confidence 13567999998 4 6899999999999999998763
No 112
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=98.99 E-value=4.4e-10 Score=103.24 Aligned_cols=116 Identities=11% Similarity=-0.057 Sum_probs=86.0
Q ss_pred cccccccCCCCCCccccccc-ccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhh--hh---------------
Q 028558 10 ISVARLRAPPAGRTSGRTSF-ALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASG--TL--------------- 71 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~--~~--------------- 71 (207)
.++++++++.+..++.+.+. +++.+.+.|++ ++.++.+++ +..|.... +.
T Consensus 463 ~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd-----------~~~~lvGiV-t~~DL~~~l~~~~~~~~~~~~~~~~~~ 530 (632)
T 3org_A 463 EGEPHLFPDSEPQHIKGILEKFPNRLVFPVID-----------ANGYLLGAI-SRKEIVDRLQHVLEDVPEPIAGHRTLV 530 (632)
T ss_dssp TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBC-----------TTCBBCCEE-SHHHHTTTTTTC---------------
T ss_pred CCceEecCCCcHHHHHHHHHhcCCcceEEEEe-----------cCCeEEEEE-EHHHHHHHHHHHhhhccccccccccee
Confidence 46789999999999999999 89999999997 344555666 65551110 00
Q ss_pred ----------hhhccCCC----------------CCcccccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC
Q 028558 72 ----------TANSAAPS----------------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD 125 (207)
Q Consensus 72 ----------~~~~~~~~----------------~~~~~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~ 125 (207)
+....... ....+++++|++ ++.++++++++.++++.|.+++++++||+ ++
T Consensus 531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~ 607 (632)
T 3org_A 531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER 607 (632)
T ss_dssp ----------------------------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence 00000000 001138899999 99999999999999999999999999999 58
Q ss_pred CcEEEEEehhhHHhh
Q 028558 126 WKLVGLVSDYDLLAL 140 (207)
Q Consensus 126 g~lvGiVt~~dl~~~ 140 (207)
|+++|+||++|+++.
T Consensus 608 G~lvGIVT~~Dll~~ 622 (632)
T 3org_A 608 GKLVGIVEREDVAYG 622 (632)
T ss_dssp TEEEEEEEGGGTEEC
T ss_pred CEEEEEEehhhHHHH
Confidence 999999999999975
No 113
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=98.98 E-value=2.5e-10 Score=101.46 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=91.1
Q ss_pred ccccccCCCCCCccccccccc-----CCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccc
Q 028558 11 SVARLRAPPAGRTSGRTSFAL-----QLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTV 85 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-----~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v 85 (207)
.+++++++.+..+|.+.+.++ ++..+.|++ +++++.|++ +-.|... . ....++
T Consensus 164 ~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd-----------~~~~lvGiV-t~~Dll~------~----~~~~~v 221 (473)
T 2zy9_A 164 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD-----------EKGRLKGVL-SLRDLIV------A----DPRTRV 221 (473)
T ss_dssp CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEEC-----------TTSBEEEEE-EHHHHHH------S----CTTSBG
T ss_pred CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEEC-----------CCCcEEEEE-EHHHHhc------C----CCCCcH
Confidence 678999999999999999886 478888886 567788888 6666311 1 124579
Q ss_pred cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
+++|++ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus 222 ~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i 275 (473)
T 2zy9_A 222 AEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 275 (473)
T ss_dssp GGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred HHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHH
Confidence 999998 899999999999999999999999999999999999999999999754
No 114
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=98.97 E-value=1e-10 Score=104.48 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=84.0
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
..+++++++.+..++.+.+.+++++.+.|++ +..++.+++ +.+|.. . ......+++++|
T Consensus 97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd-----------~~~~lvGiV-t~rDL~------~---~~~~~~~v~diM 155 (496)
T 4fxs_A 97 THPVTVRPEQTIADVMELTHYHGFAGFPVVT-----------ENNELVGII-TGRDVR------F---VTDLTKSVAAVM 155 (496)
T ss_dssp BCCCCBCSSSBHHHHHHHHTSSCCCEEEEEC-----------SSSBEEEEE-EHHHHT------T---CCCTTSBGGGTS
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEc-----------cCCEEEEEE-EHHHHh------h---cccCCCcHHHHh
Confidence 4567999999999999999999999999997 567888888 777731 1 112346799999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~ 142 (207)
++.+++++++++.++.+++++|.+++++.+||+|++|+++|+||.+|+++...
T Consensus 156 ~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 156 TPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES 208 (496)
T ss_dssp EEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence 94334899999999999999999999999999999999999999999998653
No 115
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=98.96 E-value=1.7e-09 Score=96.38 Aligned_cols=90 Identities=26% Similarity=0.394 Sum_probs=80.5
Q ss_pred cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEc--CCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd--~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
.++++|++ ++.++++++++.++++.|.+++++.+||+| ++++++|+||.+|++...
T Consensus 91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~-------------------- 148 (491)
T 1zfj_A 91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS-------------------- 148 (491)
T ss_dssp HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--------------------
T ss_pred hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--------------------
Confidence 46789999 999999999999999999999999999999 789999999999998631
Q ss_pred hhHHHHHHHHhhhcCCcccccccC-CCeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTP-APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|++ +++++++++++.+++++|.+++
T Consensus 149 ------------~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~ 183 (491)
T 1zfj_A 149 ------------DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHR 183 (491)
T ss_dssp ------------CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTT
T ss_pred ------------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcC
Confidence 134679999998 8899999999999999998874
No 116
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=98.94 E-value=5.2e-10 Score=100.60 Aligned_cols=113 Identities=5% Similarity=0.010 Sum_probs=91.3
Q ss_pred cccccccCC-CCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccc
Q 028558 10 ISVARLRAP-PAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDF 88 (207)
Q Consensus 10 ~~~~~~~~~-~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~v 88 (207)
.+++++.++ .+..+|.+.|.++++++++|++ .++.++.+++ |..|... .+... ......+|+++
T Consensus 392 ~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd----------~~~g~lvGiV-t~~Dll~-~l~~~---~~~~~~~V~~i 456 (527)
T 3pc3_A 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVD----------QDDGSVLGVV-GQETLIT-QIVSM---NRQQSDPAIKA 456 (527)
T ss_dssp CCCSCCEETTCBHHHHHHHHHHHTCSEEEEEC----------TTTCCEEEEE-EHHHHHH-HHHHH---CCCTTSBGGGG
T ss_pred CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEE----------CCCCEEEEEE-EHHHHHH-HHHhc---cCcCCCcHHHH
Confidence 367899999 9999999999999999999994 1256778888 8888311 22221 12335689999
Q ss_pred ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC----CcEEEEEehhhHHhhh
Q 028558 89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD----WKLVGLVSDYDLLALD 141 (207)
Q Consensus 89 m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~----g~lvGiVt~~dl~~~~ 141 (207)
|++ +++++++++++.+++++|.++++ +||+|++ |+++||||.+||++.+
T Consensus 457 m~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l 509 (527)
T 3pc3_A 457 LNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFI 509 (527)
T ss_dssp EET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHH
T ss_pred hcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHH
Confidence 999 99999999999999999977664 7999974 8999999999999875
No 117
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=98.93 E-value=2.7e-10 Score=102.02 Aligned_cols=89 Identities=26% Similarity=0.227 Sum_probs=1.4
Q ss_pred ccc-ccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCC---CcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchh
Q 028558 86 GDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTW 161 (207)
Q Consensus 86 ~~v-m~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~---g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
.++ |++ +++++++++++.+++++|.+++++.+||+|++ |+++|+||.+|+++..
T Consensus 99 ~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~-------------------- 156 (503)
T 1me8_A 99 FKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDL-------------------- 156 (503)
T ss_dssp TTC-----------------------------------------------------------------------------
T ss_pred cccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhhh--------------------
Confidence 345 999 99999999999999999999999999999976 8999999999998520
Q ss_pred hhHHHHHHHHhhhcCCcccccccCC--CeEecCCCCHHHHHHHHhhcC
Q 028558 162 KTFNEVQKLLSKTNGKMVGDLMTPA--PVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|+++ ++++++++++.+++++|.+++
T Consensus 157 -----------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~ 193 (503)
T 1me8_A 157 -----------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKK 193 (503)
T ss_dssp ------------------------------------------------
T ss_pred -----------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcC
Confidence 11346799999977 999999999999999998753
No 118
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=98.93 E-value=3.6e-10 Score=100.88 Aligned_cols=90 Identities=31% Similarity=0.466 Sum_probs=1.1
Q ss_pred cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhh
Q 028558 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKT 163 (207)
Q Consensus 84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (207)
+++++|++ +++++++++++.++++.|.+++++.+||+|++++++|+||.+|+++..
T Consensus 96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~---------------------- 151 (494)
T 1vrd_A 96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK---------------------- 151 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc----------------------
Confidence 46789999 999999999999999999999999999999889999999999998521
Q ss_pred HHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558 164 FNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 164 ~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g 207 (207)
....++.++|++ +++++++++++.+++++|.+++
T Consensus 152 ----------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~ 187 (494)
T 1vrd_A 152 ----------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHR 187 (494)
T ss_dssp ----------------------------------------------
T ss_pred ----------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcC
Confidence 124579999998 8999999999999999998764
No 119
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=98.91 E-value=1.4e-10 Score=103.55 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=0.4
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
.+++++++.+..+|.+.+.+++++.+.|++ ..++.+++ +..|... ......+++++|+
T Consensus 97 ~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd------------~g~lvGIV-t~rDl~~---------~~~~~~~V~~vMt 154 (490)
T 4avf_A 97 DPVTVTPSTKIIELLQMAREYGFSGFPVVE------------QGELVGIV-TGRDLRV---------KPNAGDTVAAIMT 154 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEeCCCCcHHHHHHHHHHhCCCEEEEEE------------CCEEEEEE-EhHHhhh---------ccccCCcHHHHhc
Confidence 456999999999999999999999999994 45666777 7777311 0123457999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~ 143 (207)
+.++++++++++++.+++++|.+++++.+||+|++|+++|+||++|+++....
T Consensus 155 p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~ 207 (490)
T 4avf_A 155 PKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTY 207 (490)
T ss_dssp ----------------------------------------------------C
T ss_pred cCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccC
Confidence 43348999999999999999999999999999999999999999999986533
No 120
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=98.87 E-value=2.2e-10 Score=102.22 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=5.0
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
+++++.++.+..+|.+.|.+++++++.|++ ++.++.+++ |..|.... .....+++++|+
T Consensus 104 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-----------~~~~lvGiv-t~~Dl~~~---------~~~~~~v~~im~ 162 (494)
T 1vrd_A 104 DPITVTPDMTVKEAIDLMAEYKIGGLPVVD-----------EEGRLVGLL-TNRDVRFE---------KNLSKKIKDLMT 162 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEECCCCCHHHHHHHHHHcCceEEEEEc-----------CCCEEEEEE-EHHHHHhh---------cCCCCcHHHHhC
Confidence 677899999999999999999999999996 456778888 77773211 112457999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~ 143 (207)
+.+++.++++++++.+++++|.+++++.+||+|++|+++|+||.+|+++....
T Consensus 163 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 163 PREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp ----------------------------------------------CHHHHTC
T ss_pred CCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence 64468999999999999999999999999999999999999999999987643
No 121
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=98.86 E-value=6.4e-10 Score=98.96 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=0.8
Q ss_pred cccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhh
Q 028558 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWK 162 (207)
Q Consensus 86 ~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (207)
+..|.. +++++.|+.++.|++++|.+++++.+||+|+ +++++||||.+|+...
T Consensus 141 e~g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~---------------------- 196 (556)
T 4af0_A 141 ENGFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ---------------------- 196 (556)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccCccC--CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc----------------------
Confidence 346777 8999999999999999999999999999985 5799999999998641
Q ss_pred hHHHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 163 TFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
....++.++|++++++++++.+++++.++|.++
T Consensus 197 -----------d~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~ 229 (556)
T 4af0_A 197 -----------DAETPIKSVMTTEVVTGSSPITLEKANSLLRET 229 (556)
T ss_dssp --------------------------------------------
T ss_pred -----------ccceEhhhhcccceEEecCCCCHHHHHHHHHHc
Confidence 134689999999999999999999999999865
No 122
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.77 E-value=1.7e-09 Score=96.99 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=61.4
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCccccccccc---CCceeeeecccchhhhhhhhhhccCCCCCcccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATS---SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~---~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~ 87 (207)
+++++.++.+..+|.+.|.+++++.+.|++ + ..++.+++ |..|..... ......++++
T Consensus 117 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd-----------~~~~~~~lvGiV-t~~Dl~~~~-------~~~~~~~v~~ 177 (514)
T 1jcn_A 117 DPVVLSPSHTVGDVLEAKMRHGFSGIPITE-----------TGTMGSKLVGIV-TSRDIDFLA-------EKDHTTLLSE 177 (514)
T ss_dssp SCCCCCC-----------------CEESCC-------------------CCEE-CTTTTC--------------------
T ss_pred CCEEECCCCCHHHHHHHHHhcCCCEEEEEe-----------CCCcCCEEEEEE-EHHHHHhhh-------hccCCCCHHH
Confidence 566899999999999999999999999996 3 36677888 777731110 0123457999
Q ss_pred cccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhc
Q 028558 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (207)
Q Consensus 88 vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~ 142 (207)
+|++..+++++++++++.+++++|.+++.+.+||+|++|+++|+||++|+++...
T Consensus 178 vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~ 232 (514)
T 1jcn_A 178 VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD 232 (514)
T ss_dssp ---CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence 9986446899999999999999999999999999999999999999999998653
No 123
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=98.69 E-value=2.7e-08 Score=88.59 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=92.6
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
.+++++++.+..++.+.+.+++++.+.|++. .+..++.+++ +..|.... .....+++++|+
T Consensus 99 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---------~~~~~lvGiv-t~~Dl~~~---------~~~~~~v~~im~ 159 (491)
T 1zfj_A 99 DPFFLTPEHKVSEAEELMQRYRISGVPIVET---------LANRKLVGII-TNRDMRFI---------SDYNAPISEHMT 159 (491)
T ss_dssp SCCCBCSSSBHHHHHHHHHHTTCSEEEEESC---------TTTCBEEEEE-EHHHHHHC---------SCSSSBTTTSCC
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEe---------CCCCEEEEEE-EHHHHhhh---------ccCCCcHHHHcC
Confidence 5678899999999999999999999999841 0245677888 77773111 113457999999
Q ss_pred ccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcc
Q 028558 91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (207)
Q Consensus 91 ~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~ 143 (207)
+. +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++....
T Consensus 160 ~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 160 SE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp CS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred CC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 52 47899999999999999999999999999999999999999999987643
No 124
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.68 E-value=1.1e-09 Score=98.22 Aligned_cols=92 Identities=26% Similarity=0.388 Sum_probs=49.6
Q ss_pred cccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcC---CCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccch
Q 028558 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDST 160 (207)
Q Consensus 84 ~v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
+++++|.+ +++++.+++++.+++++|.+++++.+||+|+ +++++|+||.+|+.....
T Consensus 109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------------------ 168 (514)
T 1jcn_A 109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------------------ 168 (514)
T ss_dssp TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------------
T ss_pred hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh------------------
Confidence 57789998 8999999999999999999999999999997 489999999999975310
Q ss_pred hhhHHHHHHHHhhhcCCcccccccC--CCeEecCCCCHHHHHHHHhhcC
Q 028558 161 WKTFNEVQKLLSKTNGKMVGDLMTP--APVVVRETTNLEDAARSSHSFF 207 (207)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~e~l~~m~~~g 207 (207)
.....++.++|++ +++++++++++.+++++|.+++
T Consensus 169 ------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~ 205 (514)
T 1jcn_A 169 ------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSK 205 (514)
T ss_dssp ------------------------CCBCCCCEETTCCSTTTTTHHHHHT
T ss_pred ------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcC
Confidence 0134578999998 8999999999999999998753
No 125
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.68 E-value=6.6e-09 Score=92.59 Aligned_cols=85 Identities=31% Similarity=0.511 Sum_probs=1.0
Q ss_pred ccccccccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhhcccCCCCCCCCCCCcccchhhhH
Q 028558 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKTF 164 (207)
Q Consensus 85 v~~vm~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (207)
.++.|.. ++.++++++++.++++.|.+++++.+||+|+ ++++|+|+.+|++. .
T Consensus 95 ~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-~----------------------- 147 (486)
T 2cu0_A 95 AERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-R----------------------- 147 (486)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred hhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc-C-----------------------
Confidence 4568998 9999999999999999999999999999997 99999999999874 0
Q ss_pred HHHHHHHhhhcCCcccccccCCCeEecCCCCHHHHHHHHhhc
Q 028558 165 NEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206 (207)
Q Consensus 165 ~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~e~l~~m~~~ 206 (207)
...++.++|+++++++++++++.+++++|.++
T Consensus 148 ----------~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~ 179 (486)
T 2cu0_A 148 ----------EGKLVKELMTKEVITVPESIEVEEALKIMIEN 179 (486)
T ss_dssp ------------------------------------------
T ss_pred ----------CCCCHHHHccCCCeEECCcCcHHHHHHHHHHc
Confidence 23578899998899999999999999999876
No 126
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.59 E-value=5.6e-09 Score=93.05 Aligned_cols=106 Identities=26% Similarity=0.310 Sum_probs=0.0
Q ss_pred cccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccc
Q 028558 10 ISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFM 89 (207)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm 89 (207)
..+++++++.+..++.+.+.+++.+.+.|++ + .++.+++ +..|... ....+++++|
T Consensus 101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd-----------~-~~lvGiv-t~~Dl~~-----------~~~~~v~~im 156 (486)
T 2cu0_A 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVE-----------D-EKVVGII-TKKDIAA-----------REGKLVKELM 156 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEE-----------C-CEEEEEE-EHHHhcc-----------CCCCCHHHHc
Confidence 3567889999999999999999999998885 3 6677777 7777311 1245799999
Q ss_pred cccCCceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhhh
Q 028558 90 TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (207)
Q Consensus 90 ~~~~~~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~~ 141 (207)
++ +++++++++++.++++.|.+++++.+||+|++|+++|+||.+|+++..
T Consensus 157 ~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 157 TK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARK 206 (486)
T ss_dssp ----------------------------------------------------
T ss_pred cC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhh
Confidence 98 899999999999999999999999999999999999999999999865
No 127
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.35 E-value=7.7e-08 Score=63.33 Aligned_cols=69 Identities=7% Similarity=0.037 Sum_probs=53.8
Q ss_pred cccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCcccccccccc
Q 028558 12 VARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTT 91 (207)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~~ 91 (207)
++++.|+.+..+|++.|.++++++++|++ +.++.|++ |++|. ..+++..+ ......+|+++|++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d------------~~~lvGIv-T~~Di-~~~~~~~~--~~~~~~~V~~iMt~ 65 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME------------GDEILGVV-TERDI-LDKVVAKG--KNPKEVKVEEIMTK 65 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE------------TTEEEEEE-EHHHH-HHHTTTTT--CCGGGCBGGGTCEE
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE------------CCEEEEEE-EHHHH-HHHHHhcC--CCcccCCHHHhcCC
Confidence 57999999999999999999999999994 45788888 99994 22333332 23456789999999
Q ss_pred cCCceEE
Q 028558 92 KEELHVV 98 (207)
Q Consensus 92 ~~~~~~v 98 (207)
+++++
T Consensus 66 --~~iTV 70 (70)
T 3ghd_A 66 --NPVKI 70 (70)
T ss_dssp --CTTCC
T ss_pred --CCeEC
Confidence 77653
No 128
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=97.02 E-value=0.00013 Score=46.54 Aligned_cols=69 Identities=7% Similarity=0.029 Sum_probs=50.4
Q ss_pred ccccccCCCCCCcccccccccCCCEEEeeCCCCcccccccccCCceeeeecccchhhhhhhhhhccCCCCCccccccccc
Q 028558 11 SVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT 90 (207)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~livt~~g~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~v~~vm~ 90 (207)
|+++++++.+..+|.+.|.++++++++|++ + .++.|++ |..|... .+... .......+++++|+
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d-----------~-~~l~Giv-t~~dl~~-~~~~~--~~~~~~~~v~~im~ 64 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME-----------G-DEILGVV-TERDILD-KVVAK--GKNPKEVKVEEIMT 64 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEE-----------T-TEEEEEE-EHHHHHH-HTTTT--TCCGGGCBGGGTCE
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEE-----------C-CEEEEEE-EHHHHHH-HHHHc--CCCcccCCHHHhcC
Confidence 467899999999999999999999999996 4 6778888 7777311 11111 11134568999999
Q ss_pred ccCCceE
Q 028558 91 TKEELHV 97 (207)
Q Consensus 91 ~~~~~~~ 97 (207)
+ ++.+
T Consensus 65 ~--~~~~ 69 (70)
T 3fio_A 65 K--NPVK 69 (70)
T ss_dssp E--CTTC
T ss_pred C--CCeE
Confidence 8 6543
No 129
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=93.07 E-value=0.01 Score=43.53 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=38.4
Q ss_pred cccc-cCCCEEEeeCCCCcccccc--cccCCceeeeecccch-hhhhhhhhhc
Q 028558 27 TSFA-LQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV-FASGTLTANS 75 (207)
Q Consensus 27 ~~~~-~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d-~~~~~~~~~~ 75 (207)
.|++ .+++|+|+|+ |..+.+.+ .+++++++++. |+++ +.+.+.+.+.
T Consensus 68 ~a~~~~~~~~iIlt~-g~~~~~~i~~~A~~~~ipvl~-t~~~T~~~~~~l~~~ 118 (139)
T 2ioj_A 68 TALEMPNVRCLILTG-NLEPVQLVLTKAEERGVPVIL-TGHDTLTAVSRLESV 118 (139)
T ss_dssp HHTTCTTEEEEEEET-TCCCCHHHHHHHHHHTCCEEE-CSSCHHHHHHHHHTT
T ss_pred HHHhCCCCcEEEEcC-CCCCCHHHHHHHHHCCCeEEE-ECCCHHHHHHHHHHH
Confidence 6677 7899999999 88888887 67888999999 9999 6666665543
No 130
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=54.22 E-value=11 Score=27.80 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 104 v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+.+..+.+.+.+.+.+.|.. +|+++|+|...|-++
T Consensus 121 ~~~~~~~la~~G~T~v~VA~-d~~l~GvIalaD~iK 155 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVE-GSRVLGVIALKDIVK 155 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEE-TTEEEEEEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEEE-CCEEEEEEEEecCCC
Confidence 66777788888988888886 689999999998654
No 131
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=51.78 E-value=20 Score=23.32 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 116 ITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 116 ~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
.+.+=+++++|.-+|+++.++.++.
T Consensus 13 ~~eVrli~~~Ge~lGv~~~~eAl~~ 37 (78)
T 1tif_A 13 AREVRLIDQNGDQLGIKSKQEALEI 37 (78)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred CCEEEEECCCCcCCCcccHHHHHHH
Confidence 4557789999999999999999874
No 132
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=36.40 E-value=26 Score=24.25 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=16.5
Q ss_pred eEEEcCCCcEEEEEehhhHHh
Q 028558 119 FPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 119 lpVvd~~g~lvGiVt~~dl~~ 139 (207)
.||.+++|+++|+|...-.+.
T Consensus 106 ~PV~~~~g~viGvv~vg~~l~ 126 (131)
T 1p0z_A 106 SPIQDATGKVIGIVSVGYTIE 126 (131)
T ss_dssp EEEECTTCCEEEEEEEEEEGG
T ss_pred EeEECCCCCEEEEEEEEEEhH
Confidence 689887899999998765443
No 133
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=35.38 E-value=27 Score=24.66 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=17.3
Q ss_pred EeEEEcCCCcEEEEEehhhHHh
Q 028558 118 GFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 118 ~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
..||.+++|+++|+|+..-.+.
T Consensus 110 ~~PV~~~~g~viGvv~vg~~~~ 131 (142)
T 3by8_A 110 FTPIYDENHKQIGVVAIGLELS 131 (142)
T ss_dssp EEEEECTTSCEEEEEEEEEEHH
T ss_pred EEeEEcCCCCEEEEEEEeEEHH
Confidence 3689877799999999876554
No 134
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=32.99 E-value=21 Score=29.42 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=33.8
Q ss_pred cccccccccCCCEEEeeCCCCcccccc--cccCCceeeeecccch
Q 028558 23 TSGRTSFALQLPCLLLSRPGCRVFSVL--ATSSDRVSALRRSSAV 65 (207)
Q Consensus 23 ~~~~~~~~~~v~~livt~~g~~~~~~~--~~~~~~~~~~~~s~~d 65 (207)
+....+...++||+|++. |..+...+ .+++++++++. |+..
T Consensus 74 ~~~~~l~~~~iP~IIvtr-g~~pp~elie~A~e~~ipLl~-T~~~ 116 (312)
T 1knx_A 74 QILHNLLKLNPPAIILTK-SFTDPTVLLQVNQTYQVPILK-TDFF 116 (312)
T ss_dssp TTHHHHHTTCCSCEEEET-TTCCCHHHHHHGGGTCCCEEE-ESSC
T ss_pred HHHHHHhCCCCCEEEEEC-CCCCCHHHHHHHHHcCCEEEE-eCcc
Confidence 445567788999999998 88877777 78999999998 7766
No 135
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=31.20 E-value=27 Score=26.98 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.7
Q ss_pred CCCEeEEEcCCCcEEEEEehh
Q 028558 115 RITGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 115 ~~~~lpVvd~~g~lvGiVt~~ 135 (207)
|-+.=|++|.+|+++||++..
T Consensus 187 G~SGGPLv~~~G~vVGI~s~~ 207 (231)
T 3tjo_A 187 GNAGGPLVNLDGEVIGINTLK 207 (231)
T ss_dssp TTTTSEEECTTSCEEEEEEEE
T ss_pred CCchhHeecCCCeEEEEEeEE
Confidence 667779999889999999864
No 136
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=30.57 E-value=91 Score=18.76 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEeh
Q 028558 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSD 134 (207)
Q Consensus 100 ~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~ 134 (207)
+-+|++||+..|...++..+...|.+..=+-+|-+
T Consensus 11 kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYr 45 (57)
T 3k2t_A 11 KPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYS 45 (57)
T ss_dssp CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEE
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEE
Confidence 45789999999999999988888855223455554
No 137
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=30.11 E-value=30 Score=26.94 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=20.0
Q ss_pred HcCCCEeEEEcCCCcEEEEEehhhHHh
Q 028558 113 EKRITGFPVIDDDWKLVGLVSDYDLLA 139 (207)
Q Consensus 113 ~~~~~~lpVvd~~g~lvGiVt~~dl~~ 139 (207)
+.+-+.=||+|.+|+++||-+..+=..
T Consensus 123 ~pGdSGsPVvn~dG~VIGVHt~s~~~g 149 (213)
T 3fan_A 123 ACGDSGSPVITEAGELVGVHTGSNKQG 149 (213)
T ss_dssp CCCSTTCEEEETTSCEEEEEEC-----
T ss_pred CCCCCCCccCCCCCcEEEEEeccCCcc
Confidence 467888899999999999999998665
No 138
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=30.03 E-value=31 Score=25.38 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=19.8
Q ss_pred HHcCCCEeEEEcCCCcEEEEEeh
Q 028558 112 VEKRITGFPVIDDDWKLVGLVSD 134 (207)
Q Consensus 112 ~~~~~~~lpVvd~~g~lvGiVt~ 134 (207)
...+.+.=|++|.+|+++||.+.
T Consensus 122 i~pGnSGGPl~n~~G~VVGI~~~ 144 (163)
T 2w5e_A 122 TQDGMSGAPVCDKYCRVLAVHQT 144 (163)
T ss_dssp CSSCCTTCEEECTTSCEEEEEEE
T ss_pred eCCCCchhhEEcCCCEEEEEEcc
Confidence 45688889999999999999975
No 139
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=29.87 E-value=27 Score=24.95 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=15.5
Q ss_pred CEeEEEcCCCcEEEEEe-hhhH
Q 028558 117 TGFPVIDDDWKLVGLVS-DYDL 137 (207)
Q Consensus 117 ~~lpVvd~~g~lvGiVt-~~dl 137 (207)
+..||.|++|+++|+|. ..|+
T Consensus 109 ~~~Pi~d~~G~~~G~vev~~Di 130 (151)
T 2qkp_A 109 TYAAVRDQAGDFQGVLEYVQDI 130 (151)
T ss_dssp EEEEEECTTCCEEEEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEEEEEC
Confidence 45788887899999884 3444
No 140
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=28.89 E-value=29 Score=26.79 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=18.6
Q ss_pred HcCCCEeEEEcCCCcEEEEEeh
Q 028558 113 EKRITGFPVIDDDWKLVGLVSD 134 (207)
Q Consensus 113 ~~~~~~lpVvd~~g~lvGiVt~ 134 (207)
..|-+.=|++|.+|+++||++.
T Consensus 172 ~~G~SGGPlv~~~G~vvGI~s~ 193 (237)
T 3lgi_A 172 NHGNSGGALVNSLGELMGINTL 193 (237)
T ss_dssp CTTCTTCEEECTTCCEEEEECC
T ss_pred CCCCchHHeeCCCCeEEEEEee
Confidence 3467788999988999999986
No 141
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=27.10 E-value=35 Score=26.22 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.7
Q ss_pred cCCCEeEEEcCCCcEEEEEehh
Q 028558 114 KRITGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 114 ~~~~~lpVvd~~g~lvGiVt~~ 135 (207)
.|-+.=|++|.+|+++||++..
T Consensus 180 ~GdSGGPLv~~~G~vvGI~s~~ 201 (237)
T 3k6y_A 180 QGDSGGPLIDLNGQVLGVVFGA 201 (237)
T ss_dssp TTCTTCEEECTTSCEEEEEEEE
T ss_pred CCccHHHEECCCCEEEEEEEee
Confidence 4778889998889999999864
No 142
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=26.91 E-value=1.2e+02 Score=18.86 Aligned_cols=36 Identities=17% Similarity=0.026 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehh
Q 028558 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 100 ~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~ 135 (207)
+-+|++||+..|...+...+...|.+..=+.+|-++
T Consensus 11 kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR 46 (65)
T 3ka5_A 11 KPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKR 46 (65)
T ss_dssp SCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEC
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEe
Confidence 346899999999999999888888653445676664
No 143
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=26.65 E-value=36 Score=26.71 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=18.2
Q ss_pred cCCCEeEEEcCCCcEEEEEeh
Q 028558 114 KRITGFPVIDDDWKLVGLVSD 134 (207)
Q Consensus 114 ~~~~~lpVvd~~g~lvGiVt~ 134 (207)
.|-+.=|++|.+|+++||++.
T Consensus 184 ~G~SGGPLvn~~G~vVGI~s~ 204 (245)
T 3sti_A 184 RGNSGGALLNLNGELIGINTA 204 (245)
T ss_dssp TTTTTSEEECTTSCEEEEEEC
T ss_pred CCcchhHeecCCCeEEEEEEe
Confidence 477888999988999999886
No 144
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=26.26 E-value=35 Score=25.70 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.5
Q ss_pred cCCCEeEEEcCCCcEEEEEehh
Q 028558 114 KRITGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 114 ~~~~~lpVvd~~g~lvGiVt~~ 135 (207)
.|-+.=|+++.+|+++||++-.
T Consensus 155 ~GdSGGPlv~~~g~lvGI~s~g 176 (210)
T 2as9_A 155 PGNSGSPVLNSNNEVIGVVYGG 176 (210)
T ss_dssp TTCTTCEEECTTSCEEEEECCS
T ss_pred CCCccCcEECCCCeEEEEEecc
Confidence 4777889998779999999964
No 145
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=25.29 E-value=41 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.6
Q ss_pred cCCCEeEEEcCCCcEEEEEehh
Q 028558 114 KRITGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 114 ~~~~~lpVvd~~g~lvGiVt~~ 135 (207)
.|-+.=|+++.+|+++||++-.
T Consensus 151 ~GdSGGPl~~~~g~lvGI~s~g 172 (200)
T 2w7s_A 151 PGNSGSPVLNSKHELIGILYAG 172 (200)
T ss_dssp TTCTTCEEECTTSCEEEEEEEE
T ss_pred CCCccCeEECcCCEEEEEEecc
Confidence 4777889998779999999975
No 146
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Probab=23.39 E-value=47 Score=24.46 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=18.3
Q ss_pred cCCCEeEEEcCCCcEEEEEehhh
Q 028558 114 KRITGFPVIDDDWKLVGLVSDYD 136 (207)
Q Consensus 114 ~~~~~lpVvd~~g~lvGiVt~~d 136 (207)
.|-+.=|+++.+|+++||++-..
T Consensus 154 ~GdSGGPl~~~~g~lvGI~s~g~ 176 (204)
T 2vid_A 154 SGNSGSPVLNSNNELVGIHFASD 176 (204)
T ss_dssp GGGTTCEEECTTSCEEEEEEEEC
T ss_pred CCCccCcEECCCCeEEEEEecCc
Confidence 35666799987899999998753
No 147
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=22.83 E-value=1.1e+02 Score=19.08 Aligned_cols=35 Identities=14% Similarity=-0.032 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehh
Q 028558 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 101 ~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~ 135 (207)
-+|++||+..|...+...+...|.+..=+.+|-++
T Consensus 13 pMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR 47 (66)
T 3lyv_A 13 PMDVEEARLQMELLGHDFFIYTDSEDGATNILYRR 47 (66)
T ss_dssp EECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEEC
T ss_pred CCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEE
Confidence 46899999999999999888888552234566653
No 148
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Probab=22.05 E-value=51 Score=25.47 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.9
Q ss_pred cCCCEeEEEcCCCcEEEEEehh
Q 028558 114 KRITGFPVIDDDWKLVGLVSDY 135 (207)
Q Consensus 114 ~~~~~lpVvd~~g~lvGiVt~~ 135 (207)
.|-+.=|+++.+|+++||++-.
T Consensus 183 ~GdSGGPlv~~~g~lvGI~s~g 204 (246)
T 1qtf_A 183 VGNSGSGIFNLKGELIGIHSGK 204 (246)
T ss_dssp GGGTTCEEECTTCCEEEEEEEE
T ss_pred CCCchhheECCCCEEEEEEecc
Confidence 4566779998789999999974
No 149
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=20.69 E-value=57 Score=19.79 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=27.5
Q ss_pred ceEECCCCCHHHHHHHHHHcCCCEeEEEcCCCcEEEEEehhhHHhh
Q 028558 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (207)
Q Consensus 95 ~~~v~~~~~v~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~dl~~~ 140 (207)
+..++.+.. .+..+.+.+.++..+|++-.+|+.+|-.+..+|...
T Consensus 28 ~~~vdi~~~-~~~~~~~~~~g~~~vP~~~~~g~~~~g~~~~~l~~~ 72 (81)
T 1h75_A 28 FEMINVDRV-PEAAEALRAQGFRQLPVVIAGDLSWSGFRPDMINRL 72 (81)
T ss_dssp CEEEETTTC-HHHHHHHHHTTCCSSCEEEETTEEEESCCHHHHGGG
T ss_pred eEEEECCCC-HHHHHHHHHhCCCccCEEEECCEEEecCCHHHHHHH
Confidence 344444332 234445556888999987657777766666666554
Done!