Citrus Sinensis ID: 028561

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPLPQNKQKKTQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHccccHHHEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccccc
Coil and Loop (DISEMBL)
mgdshsydrisvhqalgggsvaDVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGksasllnrplpplpdleisdqsVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLlkkiplpqnkqkktq
Flexible Loop (DISEMBL)
MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDesllkkiplpqnkqkktq
Low Complexity Region (SEG)
MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYnflsfvsnvllllvAILFFWGKSASllnrplpplpdlEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPLPQNKQKKTQ
Disordered region (IsUnstruct)
*********ISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLL**************
Disordered Region (DISOPRED)
***************LGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDES****************
Disordered Region (DISEMBL)
MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPLP********
Disordered Region (DISPRO)
*****SYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPL*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPLPQNKQKKTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9LT71	200	Reticulon-like protein B1	yes	no	0.903	0.935	0.610	2e-65
Q6NPD8	201	Reticulon-like protein B1	no	no	0.951	0.980	0.570	1e-61
O82352	255	Reticulon-like protein B5	no	no	0.932	0.756	0.398	5e-37
Q6DBN4	253	Reticulon-like protein B6	no	no	0.932	0.762	0.393	3e-36
Q9SUR3	275	Reticulon-like protein B1	no	no	0.927	0.698	0.377	8e-36
Q8GYH6	226	Reticulon-like protein B1	no	no	0.956	0.876	0.363	9e-36
Q9SH59	255	Reticulon-like protein B3	no	no	0.884	0.717	0.390	4e-35
Q9FFS0	257	Reticulon-like protein B4	no	no	0.922	0.743	0.365	2e-34
Q9SUT9	271	Reticulon-like protein B2	no	no	0.927	0.708	0.341	5e-33
Q9LJQ5	225	Reticulon-like protein B9	no	no	0.942	0.866	0.338	5e-31

>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/195 (61%), Positives = 151/195 (77%), Gaps = 8/195 (4%)

Query: 13  HQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFW 72
           HQ+LG GSVAD+LLWR R G V+LL SST  WFLFERAGYN LSFVSNVLLLLVAI F W
Sbjct: 14  HQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLW 73

Query: 73  GKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFL 132
            KSA++LNRPLPP+P++EI ++   KAAD+++VW+N+ LSIA DI + RN  R LQV+ +
Sbjct: 74  AKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLV 133

Query: 133 LWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESL 192
           LW +SYVG++ N LTLVYIGVLLSLS P++YEK+QDHIDEK+    + ++        ++
Sbjct: 134 LWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVR--------NI 185

Query: 193 LKKIPLPQNKQKKTQ 207
            +K PLP NK+KK Q
Sbjct: 186 SRKFPLPINKEKKHQ 200

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1

 Score =  235 bits (600), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/198 (57%), Positives = 149/198 (75%), Gaps = 1/198 (0%)

Query: 11  SVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILF 70
           SVHQ++  GSVAD+++W+ R GG +LLGS+T+LWFLFE+ GY+F  FV N  LL V ILF
Sbjct: 4   SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILF 63

Query: 71  FWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVA 130
            W KSA L NRP+P LP+LEI+++ V   AD I+VW+N  L++AR+I +GRN  +  +V+
Sbjct: 64  LWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVS 123

Query: 131 FLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDE 190
            +LW VS+VG+  NFLT++Y+GV+LSL +P LYE++QD IDEKL    RVIQ QYRKIDE
Sbjct: 124 VVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDE 183

Query: 191 SLLKK-IPLPQNKQKKTQ 207
            LL+K I  P NK KK Q
Sbjct: 184 RLLQKIIAKPTNKIKKMQ 201

Arabidopsis thaliana (taxid: 3702)

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 119/193 (61%)

Query: 12  VHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFF 71
           VH+ LGGG  ADV LWR +     +LG +T +W LFE   Y+ LS + ++ +L +  LF 
Sbjct: 59  VHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFL 118

Query: 72  WGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAF 131
           W  + +L+N+  P +P++ + +++ +  A  ++  +N A  I R IA+GR+L +FL V  
Sbjct: 119 WSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVV 178

Query: 132 LLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDES 191
            LW++S VG+ FNFLTLVYI  ++  +VP+LYEK +D +D    K  + +Q QY   DE 
Sbjct: 179 GLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEK 238

Query: 192 LLKKIPLPQNKQK 204
           +L KIP+   K K
Sbjct: 239 VLSKIPIASLKAK 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/193 (39%), Positives = 117/193 (60%)

Query: 12  VHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFF 71
           VH+ LGGG  ADV LWR +     +LG +T +W LFE   Y+FLS V ++L+  +A LF 
Sbjct: 59  VHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFL 118

Query: 72  WGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAF 131
              + + +N+  P +P++ I ++  +     ++  +N A  I R IA+GR+L +FL V F
Sbjct: 119 LSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVF 178

Query: 132 LLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDES 191
            LW++S VG+ FNFLTLVYI  ++  +VP+LYEK +D +D    K  + ++  Y   DE 
Sbjct: 179 GLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEK 238

Query: 192 LLKKIPLPQNKQK 204
           +L K+P+   K K
Sbjct: 239 VLSKLPVASLKAK 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  150 bits (378), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 122/196 (62%), Gaps = 4/196 (2%)

Query: 12  VHQALGGGSVADVLLWR--KRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAIL 69
           VH+ LGGG  AD+ +W+  K  GGV  LG +T  W +FE   Y+ L+ + +V+++++A+L
Sbjct: 80  VHKVLGGGKPADIFMWKNKKMSGGV--LGGATAAWVVFELMEYHLLTLLCHVMIVVLAVL 137

Query: 70  FFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQV 129
           F W  +   +N+  P +P++ I ++ +++ A  +++ +N   S  R+IA GR+L +FL  
Sbjct: 138 FLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIA 197

Query: 130 AFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKID 189
              LWV+S +G  FNFLTL YI ++L  +VP+ Y+K++D +D    K    ++ QY  +D
Sbjct: 198 IAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLD 257

Query: 190 ESLLKKIPLPQNKQKK 205
           E +L KIPL   K KK
Sbjct: 258 EKVLSKIPLGPLKNKK 273

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score =  149 bits (377), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 124/198 (62%)

Query: 9   RISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAI 68
           +I+VHQ +GGG  AD+LLWR+R   + ++  ST+ W +FE +G  FLS  S+VLL+++ I
Sbjct: 29  QITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMI 88

Query: 69  LFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQ 128
            F   + ++  NR L  LP+L +S++ V  AA   ++ +NH L +A D+ +G +   F +
Sbjct: 89  SFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFK 148

Query: 129 VAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKI 188
           V   LW++S +GS  +  TL+YIG +LS+++P LY K+Q  +D+    I R +   Y+ +
Sbjct: 149 VVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIV 208

Query: 189 DESLLKKIPLPQNKQKKT 206
           DE+++ ++    +K K +
Sbjct: 209 DENVISRLSWSLSKDKDS 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 119/187 (63%), Gaps = 4/187 (2%)

Query: 12  VHQALGGGSVADVLLWRKR--CGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAIL 69
           +H+  GGG  AD+ LWR +   GGV  LG++T+ W LFE   YN L+   ++ +L +A+L
Sbjct: 55  LHKLFGGGKPADIFLWRNKKVSGGV--LGAATVSWILFELLEYNLLTLFGHISILALAVL 112

Query: 70  FFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQV 129
           F W  +++ +++    +P++ I +  V++ A  +++ +N   ++ RDIA GR+L +FL V
Sbjct: 113 FLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLV 172

Query: 130 AFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKID 189
              LWV+S VGS  NFLTL+YI  +L  ++PVLYEK++D +D+   K  R I+ QY + D
Sbjct: 173 IAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFD 232

Query: 190 ESLLKKI 196
             +L K+
Sbjct: 233 VKVLSKV 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 124/200 (62%), Gaps = 9/200 (4%)

Query: 12  VHQALGGGSVADVLLWRKR--CGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAIL 69
           VH+ LGGG  AD+ LWR +   GGV  LG+ T  W LFE   Y+ L+F+ +  +  +A L
Sbjct: 59  VHKVLGGGKPADIFLWRNKKVSGGV--LGAVTASWVLFELFEYHLLAFLCHFAIFALAAL 116

Query: 70  FFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQV 129
           F W  + + +++  P +P++ I +  +++    +++ +N  L++ R+IA G+++ +F+ V
Sbjct: 117 FLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILV 176

Query: 130 AFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKID 189
              LWV+S +GS +NFLTL Y   +L  ++PVLYEK++D +D    K  R I+ QY  +D
Sbjct: 177 IAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLD 236

Query: 190 ESLLKKI--PLPQ---NKQK 204
           E +L+K+   +P+   NK+K
Sbjct: 237 EKVLRKVISKIPRGALNKKK 256

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  140 bits (354), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 119/196 (60%), Gaps = 4/196 (2%)

Query: 12  VHQALGGGSVADVLLW--RKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAIL 69
           VH+ LGGG  AD+ +W  +K  GGV   G +T+ W LFE   Y+ L+ + +V+++ +A+L
Sbjct: 76  VHKVLGGGKPADIFMWKDKKMSGGV--FGGATVAWVLFELMEYHLLTLLCHVMIVALAVL 133

Query: 70  FFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQV 129
           F W  +   +++  P +P++ I ++ +++ A  +++ +N  +S  R+IA GR++ +FL  
Sbjct: 134 FLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSA 193

Query: 130 AFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKID 189
              LWV+S +G  ++FLTL YI ++L  +VP+ Y+K++D +D    K    ++ QY  +D
Sbjct: 194 IAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLD 253

Query: 190 ESLLKKIPLPQNKQKK 205
             +  KIP    K KK
Sbjct: 254 AKVFSKIPRGPLKDKK 269

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1

 Score =  134 bits (337), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 109/195 (55%)

Query: 11  SVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILF 70
           S+H   GGG VAD+LLWR+      L+   +ILWFL E   YNF++ + +  +  +   F
Sbjct: 29  SIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFF 88

Query: 71  FWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVA 130
            W  ++  LN   P +P++ + + S  + A    V  N  L+   D+A GR+   F    
Sbjct: 89  IWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTT 148

Query: 131 FLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDE 190
             L++VS +G+ FNF+ L++IG +   ++PV+YE ++D +D    K+ R ++  Y+K+D 
Sbjct: 149 ISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDT 208

Query: 191 SLLKKIPLPQNKQKK 205
           ++L KIP    K KK
Sbjct: 209 NVLSKIPRGTVKNKK 223

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
225428904	207	PREDICTED: reticulon family protein-like	1.0	1.0	0.729	1e-76
449486601	207	PREDICTED: LOW QUALITY PROTEIN: reticulo	1.0	1.0	0.734	1e-74
224060588	207	predicted protein [Populus trichocarpa]	1.0	1.0	0.642	4e-70
449445908	207	PREDICTED: reticulon-like protein B11-li	1.0	1.0	0.734	1e-68
255555287	207	Reticulon-3, putative [Ricinus communis]	1.0	1.0	0.710	1e-64
18402246	200	reticulon-like protein B11 [Arabidopsis	0.903	0.935	0.610	1e-63
21593206	200	unknown [Arabidopsis thaliana]	0.903	0.935	0.605	5e-63
297832010	201	reticulon family protein [Arabidopsis ly	0.951	0.980	0.580	4e-62
30679374	201	reticulon-like protein B10 [Arabidopsis	0.951	0.980	0.570	6e-60
297830604	201	predicted protein [Arabidopsis lyrata su	0.903	0.930	0.594	3e-58

>gi|225428904|ref|XP_002285375.1| PREDICTED: reticulon family protein-like [Vitis vinifera] gi|296090446|emb|CBI40265.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/207 (72%), Positives = 179/207 (86%)

Query: 1   MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSN 60
           MG+S    RISVHQALGGGSVAD LLWR+ CG  V L S++ LWFLFERAGYN LSFV+N
Sbjct: 1   MGESDHPSRISVHQALGGGSVADFLLWRRWCGAAVCLVSASSLWFLFERAGYNLLSFVAN 60

Query: 61  VLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMG 120
           V+LLLV ILF W KSAS+LNRPLPPLPD+EIS++SVVKAAD I+VW+N+ALS+ARDIA+G
Sbjct: 61  VVLLLVVILFLWAKSASILNRPLPPLPDMEISEESVVKAADVIRVWINYALSVARDIAVG 120

Query: 121 RNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRV 180
           RN+  FLQVAF LWVVSY+GS+FNFLTLVYIGV+LSLSVPVLY+K+QDHID+KL    RV
Sbjct: 121 RNVKLFLQVAFGLWVVSYIGSLFNFLTLVYIGVVLSLSVPVLYDKYQDHIDDKLRVTHRV 180

Query: 181 IQMQYRKIDESLLKKIPLPQNKQKKTQ 207
           +Q QY+KID+ +L+KIP+P N  KKTQ
Sbjct: 181 VQTQYKKIDDKILRKIPMPINMGKKTQ 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486601|ref|XP_004157344.1| PREDICTED: LOW QUALITY PROTEIN: reticulon-like protein B11-like [Cucumis sativus]

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 177/207 (85%)

Query: 1   MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSN 60
           M  S+S  RISVHQALGGG VADVLLW+K CGGVV+L S+T LW+LFERAGYNFLSFV+N
Sbjct: 1   MVGSNSSRRISVHQALGGGHVADVLLWKKWCGGVVMLTSATALWYLFERAGYNFLSFVAN 60

Query: 61  VLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMG 120
           VLLLLV I FFW KSASLLNRPLPPLPDLEIS++SV   A+E++  +N ALSIARDIA+G
Sbjct: 61  VLLLLVIIXFFWAKSASLLNRPLPPLPDLEISEESVSMVANELRFCINFALSIARDIAIG 120

Query: 121 RNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRV 180
           RNL  FLQVA  LW+VS++GS FNFLTLVYIGVLLSLS P++Y+K+QDHIDEKLC   R 
Sbjct: 121 RNLKLFLQVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRY 180

Query: 181 IQMQYRKIDESLLKKIPLPQNKQKKTQ 207
            QMQYRK+DE++L+KIPLP NK+KK Q
Sbjct: 181 AQMQYRKLDENVLRKIPLPLNKEKKMQ 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060588|ref|XP_002300239.1| predicted protein [Populus trichocarpa] gi|222847497|gb|EEE85044.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 133/207 (64%), Positives = 163/207 (78%)

Query: 1   MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSN 60
           MG+S +  RISVHQALGGG VADVLLW++    V +L S+T LW LFE+AGYN LSFV+N
Sbjct: 1   MGESVTPRRISVHQALGGGPVADVLLWKRWYASVGVLVSATTLWILFEKAGYNLLSFVAN 60

Query: 61  VLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMG 120
           VL LLV ILFFW KSASLLNRP PPLP+LEI ++ V KAA  I V+ N+ALSIAR+I + 
Sbjct: 61  VLFLLVVILFFWAKSASLLNRPFPPLPNLEIPEEIVAKAAGIIHVYANYALSIAREIVIE 120

Query: 121 RNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRV 180
           +N   FLQV     V SY+GS+ NFLTLVYIGVLLSLSVP++Y+K+Q HIDEK+C   ++
Sbjct: 121 KNFKVFLQVVSGFCVASYIGSLCNFLTLVYIGVLLSLSVPLVYDKYQHHIDEKICLAHKI 180

Query: 181 IQMQYRKIDESLLKKIPLPQNKQKKTQ 207
           IQ QY+KI +++LKKIPL  NK+KKTQ
Sbjct: 181 IQEQYKKIHDAILKKIPLSSNKEKKTQ 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445908|ref|XP_004140714.1| PREDICTED: reticulon-like protein B11-like [Cucumis sativus]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 178/207 (85%)

Query: 1   MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSN 60
           M  S+S  RISVHQALGGG VADVLLW+K CGGVV+L S+T LW+LFERAGYNFLSFV+N
Sbjct: 1   MVGSNSSRRISVHQALGGGHVADVLLWKKWCGGVVMLTSATALWYLFERAGYNFLSFVAN 60

Query: 61  VLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMG 120
           VLLLLV ILFFW KSASLLNRPLPPLPDLEIS++SV   A+E++  +N ALSIARDIA+G
Sbjct: 61  VLLLLVIILFFWAKSASLLNRPLPPLPDLEISEESVSMVANELRFCINFALSIARDIAIG 120

Query: 121 RNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRV 180
           RNL  FLQVA  LW+VS++GS FNFLTLVYIGVLLSLS P++Y+K+QDHIDEKLC   R 
Sbjct: 121 RNLKLFLQVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRY 180

Query: 181 IQMQYRKIDESLLKKIPLPQNKQKKTQ 207
            QMQY+K+DE++L+KIPLP NK+KK Q
Sbjct: 181 AQMQYKKLDENVLRKIPLPLNKEKKMQ 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555287|ref|XP_002518680.1| Reticulon-3, putative [Ricinus communis] gi|223542061|gb|EEF43605.1| Reticulon-3, putative [Ricinus communis]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 147/207 (71%), Positives = 172/207 (83%)

Query: 1   MGDSHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSN 60
           MG+S    RISVHQ LGGGSVADVLLW+K C  V ++  +T LW LFE+AGYNFLSFV+N
Sbjct: 1   MGESIPPRRISVHQCLGGGSVADVLLWKKWCSSVTIVVGATSLWMLFEQAGYNFLSFVAN 60

Query: 61  VLLLLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMG 120
           VL LL+AILFFW KSASLLNRPLPPLPDLEIS++++VK A  IQV+ N ALSIARDIA+G
Sbjct: 61  VLFLLLAILFFWAKSASLLNRPLPPLPDLEISEETIVKVAGVIQVYANIALSIARDIAIG 120

Query: 121 RNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRV 180
           RNL  FLQVAF LW+VSY+GS+ NFLTL+YIG+LLS SVPVLY+K+Q HIDEKL    ++
Sbjct: 121 RNLKLFLQVAFGLWIVSYIGSLCNFLTLLYIGILLSFSVPVLYDKYQHHIDEKLSVTHKI 180

Query: 181 IQMQYRKIDESLLKKIPLPQNKQKKTQ 207
           IQ QYRKID+S LKKIP P NK+KK Q
Sbjct: 181 IQTQYRKIDDSFLKKIPFPLNKEKKIQ 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402246|ref|NP_566635.1| reticulon-like protein B11 [Arabidopsis thaliana] gi|75274072|sp|Q9LT71.1|RTNLK_ARATH RecName: Full=Reticulon-like protein B11; Short=AtRTNLB11 gi|11994469|dbj|BAB02471.1| unnamed protein product [Arabidopsis thaliana] gi|26449615|dbj|BAC41933.1| unknown protein [Arabidopsis thaliana] gi|28950723|gb|AAO63285.1| At3g19460 [Arabidopsis thaliana] gi|332642721|gb|AEE76242.1| reticulon-like protein B11 [Arabidopsis thaliana]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/195 (61%), Positives = 151/195 (77%), Gaps = 8/195 (4%)

Query: 13  HQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFW 72
           HQ+LG GSVAD+LLWR R G V+LL SST  WFLFERAGYN LSFVSNVLLLLVAI F W
Sbjct: 14  HQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLW 73

Query: 73  GKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFL 132
            KSA++LNRPLPP+P++EI ++   KAAD+++VW+N+ LSIA DI + RN  R LQV+ +
Sbjct: 74  AKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLV 133

Query: 133 LWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESL 192
           LW +SYVG++ N LTLVYIGVLLSLS P++YEK+QDHIDEK+    + ++        ++
Sbjct: 134 LWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVR--------NI 185

Query: 193 LKKIPLPQNKQKKTQ 207
            +K PLP NK+KK Q
Sbjct: 186 SRKFPLPINKEKKHQ 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593206|gb|AAM65155.1| unknown [Arabidopsis thaliana]

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 118/195 (60%), Positives = 150/195 (76%), Gaps = 8/195 (4%)

Query: 13  HQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFW 72
           HQ+LG GSVAD+LLWR R G V+LL SST  WFLFERAGYN LSFVSNVLLLLV I F W
Sbjct: 14  HQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVPIFFLW 73

Query: 73  GKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFL 132
            KSA++LNRPLPP+P++EI ++   KAAD+++VW+N+ LSIA DI + RN  R LQV+ +
Sbjct: 74  AKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLV 133

Query: 133 LWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESL 192
           LW +SYVG++ N LTLVYIGVLLSLS P++YEK+QDHIDEK+    + ++        ++
Sbjct: 134 LWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVR--------NI 185

Query: 193 LKKIPLPQNKQKKTQ 207
            +K PLP NK+KK Q
Sbjct: 186 SRKFPLPINKEKKHQ 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832010|ref|XP_002883887.1| reticulon family protein [Arabidopsis lyrata subsp. lyrata] gi|297329727|gb|EFH60146.1| reticulon family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 115/198 (58%), Positives = 152/198 (76%), Gaps = 1/198 (0%)

Query: 11  SVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILF 70
           SVHQ++  GSVAD+++W+ R  G +LLGS+T+LWFLFE+ GY+F  FV N  LLLV ILF
Sbjct: 4   SVHQSIRFGSVADLIMWKNRRVGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLLVVILF 63

Query: 71  FWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVA 130
            W KSA L NRP+P LP+LEIS+ SV   AD ++VW+N AL++AR+I +GRN  +  +V+
Sbjct: 64  LWAKSAILFNRPMPQLPNLEISEASVFMVADTLRVWINTALAVAREIYVGRNAKQLFRVS 123

Query: 131 FLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDE 190
            +LW VS+VG+  NFLT++Y+GV+LSL +P+LYE++QDHIDEKL    RV+Q QYRKIDE
Sbjct: 124 VVLWTVSFVGNFLNFLTILYLGVVLSLLIPILYERYQDHIDEKLSLTHRVVQTQYRKIDE 183

Query: 191 SLLKK-IPLPQNKQKKTQ 207
            LL+K I  P NK KK Q
Sbjct: 184 RLLQKIIAKPTNKIKKMQ 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679374|ref|NP_179130.2| reticulon-like protein B10 [Arabidopsis thaliana] gi|75127109|sp|Q6NPD8.1|RTNLJ_ARATH RecName: Full=Reticulon-like protein B10; Short=AtRTNLB10 gi|38454158|gb|AAR20773.1| At2g15280 [Arabidopsis thaliana] gi|38604042|gb|AAR24764.1| At2g15280 [Arabidopsis thaliana] gi|330251287|gb|AEC06381.1| reticulon-like protein B10 [Arabidopsis thaliana]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/198 (57%), Positives = 149/198 (75%), Gaps = 1/198 (0%)

Query: 11  SVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILF 70
           SVHQ++  GSVAD+++W+ R GG +LLGS+T+LWFLFE+ GY+F  FV N  LL V ILF
Sbjct: 4   SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILF 63

Query: 71  FWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVA 130
            W KSA L NRP+P LP+LEI+++ V   AD I+VW+N  L++AR+I +GRN  +  +V+
Sbjct: 64  LWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVS 123

Query: 131 FLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDE 190
            +LW VS+VG+  NFLT++Y+GV+LSL +P LYE++QD IDEKL    RVIQ QYRKIDE
Sbjct: 124 VVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDE 183

Query: 191 SLLKK-IPLPQNKQKKTQ 207
            LL+K I  P NK KK Q
Sbjct: 184 RLLQKIIAKPTNKIKKMQ 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830604|ref|XP_002883184.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329024|gb|EFH59443.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 151/195 (77%), Gaps = 8/195 (4%)

Query: 13  HQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFW 72
           HQ+LG GSVAD+LLWR + G  +LL SST  WFLFERAGYN LSFVSNVLLLLVAILF W
Sbjct: 15  HQSLGAGSVADLLLWRNQTGATILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAILFLW 74

Query: 73  GKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFL 132
            KSA++LNRPLPP+P++EI ++  +KAAD+++VW+NH LSIA DI + RN  R LQV+ +
Sbjct: 75  AKSATVLNRPLPPVPNMEIPEEFAIKAADDLRVWINHVLSIASDITIARNPIRLLQVSLV 134

Query: 133 LWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESL 192
           LW +SYVG++ N  TLVYIG+LLSLS P++YEK+Q+HIDEK+    + ++        S+
Sbjct: 135 LWAISYVGTLINSFTLVYIGILLSLSFPIVYEKYQNHIDEKVNSTSKFVR--------SI 186

Query: 193 LKKIPLPQNKQKKTQ 207
            +K P+P NK+KK Q
Sbjct: 187 SRKFPMPINKEKKHQ 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.951	0.980	0.494	6.9e-47
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.927	0.752	0.376	7.9e-30
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.927	0.698	0.352	1.2e-28
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.922	0.743	0.345	1.9e-28
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.927	0.708	0.321	4.5e-27
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.937	0.862	0.311	9.7e-25
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.869	0.722	0.304	2.4e-24
TAIR|locus:2090609	218	AT3G19460 "AT3G19460" [Arabido	0.652	0.619	0.442	6.1e-23
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.782	0.798	0.343	6.1e-23
UNIPROTKB|F1NCK0	199	Gga.4205 "Uncharacterized prot	0.492	0.512	0.294	5.8e-12

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 98/198 (49%), Positives = 131/198 (66%)

Query:    11 SVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYXXXXXXXXXXXXXXAILF 70
             SVHQ++  GSVAD+++W+ R GG +LLGS+T+LWFLFE+ GY               ILF
Sbjct:     4 SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILF 63

Query:    71 FWGKSASXXXXXXXXXXXXEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVA 130
              W KSA             EI+++ V   AD I+VW+N  L++AR+I +GRN  +  +V+
Sbjct:    64 LWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVS 123

Query:   131 FLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDE 190
              +LW VS+VG+  NFLT++Y+GV+LSL +P LYE++QD IDEKL    RVIQ QYRKIDE
Sbjct:   124 VVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDE 183

Query:   191 SLLKKI-PLPQNKQKKTQ 207
              LL+KI   P NK KK Q
Sbjct:   184 RLLQKIIAKPTNKIKKMQ 201

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 73/194 (37%), Positives = 103/194 (53%)

Query:    12 VHQALGGGSVADVLLWR-KRCGGVVLLGSSTILWFLFERAGYXXXXXXXXXXXXXXAILF 70
             VH+ LGGG  ADV LWR K+  G VL G +T +W LFE   Y                LF
Sbjct:    59 VHKVLGGGKPADVFLWRDKKLSGAVL-GVATAIWVLFELVEYHLLSLLCHISILALGGLF 117

Query:    71 FWGKSASXXXXXXXXXXXXEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVA 130
              W  + +             + +++ +  A  ++  +N A  I R IA+GR+L +FL V 
Sbjct:   118 LWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVV 177

Query:   131 FLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDE 190
               LW++S VG+ FNFLTLVYI  ++  +VP+LYEK +D +D    K  + +Q QY   DE
Sbjct:   178 VGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDE 237

Query:   191 SLLKKIPLPQNKQK 204
              +L KIP+   K K
Sbjct:   238 KVLSKIPIASLKAK 251

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 69/196 (35%), Positives = 103/196 (52%)

Query:    12 VHQALGGGSVADVLLWR--KRCGGVVLLGSSTILWFLFERAGYXXXXXXXXXXXXXXAIL 69
             VH+ LGGG  AD+ +W+  K  GGV  LG +T  W +FE   Y              A+L
Sbjct:    80 VHKVLGGGKPADIFMWKNKKMSGGV--LGGATAAWVVFELMEYHLLTLLCHVMIVVLAVL 137

Query:    70 FFWGKSASXXXXXXXXXXXXEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQV 129
             F W  +               I ++ +++ A  +++ +N   S  R+IA GR+L +FL  
Sbjct:   138 FLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIA 197

Query:   130 AFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKID 189
                LWV+S +G  FNFLTL YI ++L  +VP+ Y+K++D +D    K    ++ QY  +D
Sbjct:   198 IAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLD 257

Query:   190 ESLLKKIPLPQNKQKK 205
             E +L KIPL   K KK
Sbjct:   258 EKVLSKIPLGPLKNKK 273

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 69/200 (34%), Positives = 108/200 (54%)

Query:    12 VHQALGGGSVADVLLWRKR--CGGVVLLGSSTILWFLFERAGYXXXXXXXXXXXXXXAIL 69
             VH+ LGGG  AD+ LWR +   GGV  LG+ T  W LFE   Y              A L
Sbjct:    59 VHKVLGGGKPADIFLWRNKKVSGGV--LGAVTASWVLFELFEYHLLAFLCHFAIFALAAL 116

Query:    70 FFWGKSASXXXXXXXXXXXXEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQV 129
             F W  + +             I +  +++    +++ +N  L++ R+IA G+++ +F+ V
Sbjct:   117 FLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILV 176

Query:   130 AFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKID 189
                LWV+S +GS +NFLTL Y   +L  ++PVLYEK++D +D    K  R I+ QY  +D
Sbjct:   177 IAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLD 236

Query:   190 ESLLKKI--PLPQ---NKQK 204
             E +L+K+   +P+   NK+K
Sbjct:   237 EKVLRKVISKIPRGALNKKK 256

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 63/196 (32%), Positives = 101/196 (51%)

Query:    12 VHQALGGGSVADVLLWR--KRCGGVVLLGSSTILWFLFERAGYXXXXXXXXXXXXXXAIL 69
             VH+ LGGG  AD+ +W+  K  GGV   G +T+ W LFE   Y              A+L
Sbjct:    76 VHKVLGGGKPADIFMWKDKKMSGGV--FGGATVAWVLFELMEYHLLTLLCHVMIVALAVL 133

Query:    70 FFWGKSASXXXXXXXXXXXXEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQV 129
             F W  +               I ++ +++ A  +++ +N  +S  R+IA GR++ +FL  
Sbjct:   134 FLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSA 193

Query:   130 AFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKID 189
                LWV+S +G  ++FLTL YI ++L  +VP+ Y+K++D +D    K    ++ QY  +D
Sbjct:   194 IAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLD 253

Query:   190 ESLLKKIPLPQNKQKK 205
               +  KIP    K KK
Sbjct:   254 AKVFSKIPRGPLKDKK 269

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 61/196 (31%), Positives = 97/196 (49%)

Query:    11 SVHQALGGGSVADVLLWRK-RCGGVVLLGSSTILWFLFERAGYXXXXXXXXXXXXXXAIL 69
             S+H   GGG VAD+LLWR+ +    +++G S ILWFL E   Y                 
Sbjct:    29 SIHSIFGGGKVADILLWREPKIAATLVIGVS-ILWFLMEVVEYNFITLICHASMTSMLFF 87

Query:    70 FFWGKSASXXXXXXXXXXXXEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQV 129
             F W  ++              + + S  + A    V  N  L+   D+A GR+   F   
Sbjct:    88 FIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLT 147

Query:   130 AFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKID 189
                L++VS +G+ FNF+ L++IG +   ++PV+YE ++D +D    K+ R ++  Y+K+D
Sbjct:   148 TISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVD 207

Query:   190 ESLLKKIPLPQNKQKK 205
              ++L KIP    K KK
Sbjct:   208 TNVLSKIPRGTVKNKK 223

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 57/187 (30%), Positives = 98/187 (52%)

Query:    22 ADVLLWRKR--CGGVVLLGSSTILWFLFERAGYXXXXXXXXXXXXXXAILFFWGKSASXX 79
             AD+LLWR+R    GV+++  ST+ W +FE +G                I F   + ++  
Sbjct:    64 ADLLLWRRRHLSLGVIII--STVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFR 121

Query:    80 XXXXXXXXXXEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFL-QVAFLLWVVSY 138
                        +S++ V  AA   ++ +NH L +A D+ +G +   F  QV   LW++S 
Sbjct:   122 NRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSA 181

Query:   139 VGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLC-KIQRVIQMQYRKIDESLLKKIP 197
             +GS  +  TL+YIG +LS+++P LY K+Q  +D K C  I R +   Y+ +DE+++ ++ 
Sbjct:   182 IGSYISLCTLLYIGTILSVTIPALYSKYQSKVD-KCCGTIHRRLSHHYKIVDENVISRLS 240

Query:   198 LPQNKQK 204
                +K K
Sbjct:   241 WSLSKDK 247

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090609 AT3G19460 "AT3G19460" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 61/138 (44%), Positives = 79/138 (57%)

Query:    20 SVADVLLWRKRCGGVVLLGSSTILWFLFERAGYXXXXXXXXXXXXXXAILFFWGKSASXX 79
             +VAD+LLWR R G V+LL SST  WFLFERAGY              AI F W KSA+  
Sbjct:     5 AVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVL 64

Query:    80 XXXXXXXXXXEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFL-LWVVSY 138
                       EI ++   KAAD+++VW+N+ LSIA DI + RN  R LQV F  LW    
Sbjct:    65 NRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVFFHHLWQT-- 122

Query:   139 VGSVFNFLTLVYIGVLLS 156
             +  +F FL ++Y+ V +S
Sbjct:   123 ICCIFLFLHVMYLTVHIS 140

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 56/163 (34%), Positives = 92/163 (56%)

Query:     8 DRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYXXXXXXXXXXXXXXA 67
             DR ++H+ LGGG VADV+LWRK+   V ++  +   W +FE   Y              +
Sbjct:    12 DR-TIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLS 70

Query:    68 ILFFWGKSASXXXXXXXXXXXXEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFL 127
             ILF W KSAS            +IS+    +A+  +++ VN  L ++ DIAM R+   + 
Sbjct:    71 ILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYT 130

Query:   128 QVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHI 170
             +VA  L+++S +GS+ +F TL +  VL+ ++VP  YE+++D+I
Sbjct:   131 KVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NCK0 Gga.4205 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 135 (52.6 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
 Identities = 30/102 (29%), Positives = 57/102 (55%)

Query:    91 ISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVY 150
             +S++ + K +  +   +N  +   R + +  +L   L+ A L+WV +YVG++FN LTL+ 
Sbjct:    90 VSEELIQKYSSVVLGHINGTVKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLI 149

Query:   151 IGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQMQYRKIDESL 192
             + ++   SVPV+YE+ Q  ID  L  + + ++    KI   +
Sbjct:   150 LALISLFSVPVIYERHQAQIDHYLGLVNKNVKDAMAKIQAKI 191

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT71	RTNLK_ARATH	No assigned EC number	0.6102	0.9033	0.935	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_I0086 hypothetical protein (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam02453	164	pfam02453, Reticulon, Reticulon	1e-49

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  158 bits (402), Expect = 1e-49
 Identities = 73/165 (44%), Positives = 112/165 (67%), Gaps = 3/165 (1%)

Query: 21  VADVLLWR-KRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLL 79
           VAD+LLWR  +  GVV  GS  ++W LF  +GY+ LS +S +LLLL+A+ F W  +  LL
Sbjct: 1   VADLLLWRDPKKSGVVF-GSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLL 59

Query: 80  NR-PLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSY 138
           N  P P  PD+ +S+++V + AD ++V +N AL   R + +G +L   L+ A  LW++SY
Sbjct: 60  NAVPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSY 119

Query: 139 VGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQM 183
           +GS+F+ LTL+YIGV+L+ +VP+LYEK+QD ID  + K +  ++ 
Sbjct: 120 LGSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	97.39
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	95.37
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	93.28
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	92.12
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	88.23

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-48  Score=322.57  Aligned_cols=197  Identities=48%  Similarity=0.852  Sum_probs=190.6

Q ss_pred             CCccccccccCCCccceeeeccccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhhCC-CCC-
Q 028561            7 YDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNR-PLP-   84 (207)
Q Consensus         7 ~~~~~~~~~lg~~~v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~is~~s~~~l~~l~~~fl~~~~~~~~~~-~~~-   84 (207)
                      +|++|+|+.+|||+++|+++|||++.||.+|++.+++|++|+..+|+.+++.|+++++.+.+.|.|.+...+++| +.| 
T Consensus        29 ~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~  108 (230)
T KOG1792|consen   29 GREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPG  108 (230)
T ss_pred             CCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            799999999999999999999999999999999999999999999999999999999999999999999888887 555 


Q ss_pred             -CCC-ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 028561           85 -PLP-DLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVL  162 (207)
Q Consensus        85 -~~~-~~~isee~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~l  162 (207)
                       +.| ++++|||.+++.+++++..+|+.+.++|++++++|+.+++|+.+++|+++++|+|||+.|++|+|++++||+|.+
T Consensus       109 ~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~  188 (230)
T KOG1792|consen  109 AYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVL  188 (230)
T ss_pred             ccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch
Confidence             567 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 028561          163 YEKFQDHIDEKLCKIQRVIQMQYRKIDESLLKKIPLPQNKQ  203 (207)
Q Consensus       163 Y~~~q~~ID~~v~~~~~~~~~~~~~~~~k~~~kip~~~~~~  203 (207)
                      ||+|||+||++++++.++.+++|+++++|+.+|||+++.++
T Consensus       189 YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~  229 (230)
T KOG1792|consen  189 YEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK  229 (230)
T ss_pred             hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence            99999999999999999999999999999999999987654

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=3.3e-38  Score=251.63  Aligned_cols=163  Identities=39%  Similarity=0.722  Sum_probs=47.1

Q ss_pred             cceeeeccccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhhCCCC------CCCCceeeCHH
Q 028561           21 VADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRPL------PPLPDLEISDQ   94 (207)
Q Consensus        21 v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~is~~s~~~l~~l~~~fl~~~~~~~~~~~~------~~~~~~~isee   94 (207)
                      |+|+++||||++||.+|++++++|+++++.++|++|++|+++++.+++.+++....+++++.+      ++.++.++|||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            689999999999999999999999999999999999999999999999888887777766644      33357889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 028561           95 SVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKL  174 (207)
Q Consensus        95 ~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~~q~~ID~~v  174 (207)
                      .++++++.+.+.+|..++.+|+++.++|+..|+++++++|+++++|+++|++||++++++++||+|++||+||++||+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~  160 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV  160 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028561          175 CKIQRVIQM  183 (207)
Q Consensus       175 ~~~~~~~~~  183 (207)
                      +++++++|+
T Consensus       161 ~~~~~~~~k  169 (169)
T PF02453_consen  161 AKVKEKVKK  169 (169)
T ss_dssp             ---------
T ss_pred             HHHHHHhcC
Confidence            999988874

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=97.39  E-value=0.0027  Score=60.55  Aligned_cols=163  Identities=17%  Similarity=0.247  Sum_probs=106.1

Q ss_pred             ccceeeeccccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhhhhCCC--------CCCCC--ce
Q 028561           20 SVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLLLLVAILFFWGKSASLLNRP--------LPPLP--DL   89 (207)
Q Consensus        20 ~v~dlllWrd~~~Sg~vf~~~~~~~~L~~~~~~s~is~~s~~~l~~l~~~fl~~~~~~~~~~~--------~~~~~--~~   89 (207)
                      .+.++..|+||.+|..+++....+   .+   ...+.-+.-..++.+++..+|.....-.++.        +|+..  +-
T Consensus       505 ~~~~l~~We~P~kt~~Fl~~~~~i---I~---r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEq  578 (683)
T PF04842_consen  505 WLQKLASWEEPLKTLVFLALFLYI---IY---RGWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQ  578 (683)
T ss_pred             HHHHHhhccCcchhHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHH
Confidence            477899999999997777665542   21   2223333333334444444554432122221        22211  11


Q ss_pred             eeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhchhH
Q 028561           90 EISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDH  169 (207)
Q Consensus        90 ~isee~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~~q~~  169 (207)
                      .+.-..+..-++......|-++-++|.|++...+..+-++++.+..++.+-..+++--++...++-.||-..=+.+    
T Consensus       579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr----  654 (683)
T PF04842_consen  579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR----  654 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch----
Confidence            1222334445677888899999999999999999999999999999999999999999999999999986432221    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 028561          170 IDEKLCKIQRVIQMQYRKIDESLLKKIPLPQNK  202 (207)
Q Consensus       170 ID~~v~~~~~~~~~~~~~~~~k~~~kip~~~~~  202 (207)
                        .-.++..+.+++.+.        .||-.|..
T Consensus       655 --~s~er~~RRlrEWW~--------sIPAaPV~  677 (683)
T PF04842_consen  655 --ESSERFNRRLREWWD--------SIPAAPVQ  677 (683)
T ss_pred             --hhHHHHHHHHHHHHh--------hCCccceE
Confidence              112445556677776        78877654

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.37  E-value=0.07  Score=45.07  Aligned_cols=79  Identities=10%  Similarity=0.121  Sum_probs=67.1

Q ss_pred             HHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-----------------------hhH
Q 028561          113 IARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKF-----------------------QDH  169 (207)
Q Consensus       113 ~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~~-----------------------q~~  169 (207)
                      ...++++|||.+.+..++.+..++..+-..++..++..+..+.+++++.++.++                       ||+
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            456999999999999999999999999888999999888888888888777665                       567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 028561          170 IDEKLCKIQRVIQMQYRKIDES  191 (207)
Q Consensus       170 ID~~v~~~~~~~~~~~~~~~~k  191 (207)
                      ++++...++.++|...+++++-
T Consensus       122 ~~~~a~~~~~~in~~l~~l~~i  143 (230)
T KOG1792|consen  122 VLALASSLRVEINQALSELRDI  143 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888877763

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=93.28  E-value=0.7  Score=36.78  Aligned_cols=66  Identities=17%  Similarity=0.037  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 028561          100 ADEIQVWVNHALSIARDIAMGRNLSRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEK  165 (207)
Q Consensus       100 ~~~v~~~in~~l~~~~~i~~~~d~~~slk~~~~l~~ls~lg~~~s~~tLl~i~~~~~FtvP~lY~~  165 (207)
                      ++.+...+....+.++.++.++|+..|..+++++++.+.+--...+..++.+..+-.|+=|++-..
T Consensus        71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~  136 (156)
T PF08372_consen   71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNP  136 (156)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCC
Confidence            455556667778899999999999999999999999988888888888887777777777777653

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=92.12  E-value=2  Score=38.24  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=17.3

Q ss_pred             ccceeeeccccCchhHHHHHHHH
Q 028561           20 SVADVLLWRKRCGGVVLLGSSTI   42 (207)
Q Consensus        20 ~v~dlllWrd~~~Sg~vf~~~~~   42 (207)
                      .+.++++|+||..+-.++...+.
T Consensus        31 ~vl~il~W~~p~~t~~~L~l~t~   53 (359)
T PF06398_consen   31 RVLRILTWTNPDYTLSFLLLYTF   53 (359)
T ss_pred             HHHHeEEeCCCCcchHHHHHHHH
Confidence            46789999999988666555443

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=88.23  E-value=0.3  Score=38.83  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=21.9

Q ss_pred             CCccceeeeccccCchhHHHHHHHHH
Q 028561           18 GGSVADVLLWRKRCGGVVLLGSSTIL   43 (207)
Q Consensus        18 ~~~v~dlllWrd~~~Sg~vf~~~~~~   43 (207)
                      |+++..++.||||..|++..++.+++
T Consensus        82 gERl~allsWrdP~aT~lf~~~clv~  107 (156)
T PF08372_consen   82 GERLQALLSWRDPRATALFVVFCLVA  107 (156)
T ss_pred             HHHHHHhhccCCccHHHHHHHHHHHH
Confidence            45799999999999999888776664

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.21
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.33

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.21  E-value=1.5e-07  Score=65.20  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=51.1

Q ss_pred             HHHHHhhhhCCCCCCCC-------ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 028561           71 FWGKSASLLNRPLPPLP-------DLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNLSRFLQ  128 (207)
Q Consensus        71 l~~~~~~~~~~~~~~~~-------~~~isee~v~~~~~~v~~~in~~l~~~~~i~~~~d~~~slk  128 (207)
                      +|..+.+.++|+....|       |+++|+|.+++.++.+...+|.+++++|+++++||+.+|+|
T Consensus        15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            67777788888764443       88999999999999999999999999999999999999875

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.33  E-value=2.5e-06  Score=56.18  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             CceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 028561           87 PDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRN  122 (207)
Q Consensus        87 ~~~~isee~v~~~~~~v~~~in~~l~~~~~i~~~~d  122 (207)
                      .|+++|+|.+++.++.+...+|.++.++|++++++|
T Consensus        25 ~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A           25 SEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             cCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            388999999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00