BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028562
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
Length = 262
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Query: 49 GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSE 106
G+ KLS +K+EWN+R S+FHA + LY+L+ D + D + D ++
Sbjct: 37 GFHKLSARQKIEWNSRTVSSFHALVVGCFCLYILVYDDAVNADPVWGDPFMVKLN----- 91
Query: 107 TVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTE 166
+ ++ GY +SDL +I++ + +G +V HH ++++ + L G + L E
Sbjct: 92 --VAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVLGEGMLPYFGNFRLIAE 149
Query: 167 ITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVM 203
+TPFVN RW+ +V G K S + NGV + + + ++
Sbjct: 150 FSTPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIV 187
>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1
Length = 263
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Query: 49 GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETV 108
G+ LS +KK+EWN+R ST H+ + LY+ L + D + SL+
Sbjct: 37 GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLFDEATKAD-----PLWGGPSLANVN 91
Query: 109 LGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEIT 168
+ I+ GY +SDL++I+ + +G +++HH S+++ +L L +G L E++
Sbjct: 92 IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151
Query: 169 TPFVNLRWYLDVAGL-KSSNIYICNGV 194
+PFVN RW+ + K S + NG+
Sbjct: 152 SPFVNQRWFFEALKYPKFSKAIVINGI 178
>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56b PE=3 SV=1
Length = 257
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 12/172 (6%)
Query: 38 LTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELI 97
L II ++ K K++EW NR ST +A + S S+Y L YY+E I
Sbjct: 26 LPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSIYCL---------YYNEWI 76
Query: 98 INR---TSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGK 154
+N TS +S + YF+ D + + L +LHH +++ S G
Sbjct: 77 VNSLRSTSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHHTIALLSFTFLGGKGL 136
Query: 155 AQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCM 206
A +L FTEITTP +NLR++L LK+ +Y+ NG+ +F+G+++
Sbjct: 137 AHHLLLSYTFTEITTPLINLRFFLLDLNLKNHPLYVINGLLIFVGFVLFRVF 188
>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1
Length = 264
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Query: 48 KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSET 107
+GY KL K +WN+R ST HA I LY+L D +ED + +L +
Sbjct: 33 QGYGKLPPNKLNDWNSRLVSTVHALIVGLFCLYILWYDDAVNED-----PVWGDPNLVKL 87
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
+ I+ GY DL ++ + +G + +V HH ++++ L G + L +E+
Sbjct: 88 NVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPYFANFRLISEL 147
Query: 168 TTPFVNLRWYLD-VAGLKSSNIYICNGVAL 196
+TPFVN RW+ + +A ++ + + NG+A+
Sbjct: 148 STPFVNQRWFFEALAYPRTHQLVVANGIAM 177
>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1
Length = 276
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 49 GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETV 108
GY LS +KK+EWN+R ST H+ + LYL ++DE I T
Sbjct: 50 GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLF---------FFDEATITDPLWGDPTY 100
Query: 109 LGISI----GYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF 164
+ I+I GY +SDL +IL+ + +G +++HH + + + L +G L
Sbjct: 101 VNINIATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLL 160
Query: 165 TEITTPFVNLRWYLDVAGL-KSSNIYICNGV 194
E+++PFVN RW+ + K S + NG+
Sbjct: 161 AELSSPFVNQRWFFEALKYPKFSKANVINGI 191
>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1
Length = 258
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 50 YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSET 107
YR+LS K+ EW++R ST HA I +A LY+L D + D + D +
Sbjct: 37 YRQLSFGKQCEWDSRFVSTNHALIVGSACLYILAYDDAVNADPIWGDPFWVKMN------ 90
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
+ I+ GY + DL ++ + + V HH +S L G + L +E+
Sbjct: 91 -VAITCGYLVQDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISEL 149
Query: 168 TTPFVNLRWYLDVAG-LKSSNIYICNGVALFL 198
+TPFVN RW+ DV G +SS + NG+A+ L
Sbjct: 150 STPFVNQRWFFDVIGKPRSSWPVLLNGLAMAL 181
>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1
Length = 259
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 10/152 (6%)
Query: 50 YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSET 107
YR+LS K+ EW++R ST HA + + LY+L + + D + D +
Sbjct: 38 YRQLSFGKQCEWDSRCVSTTHALVVGSGCLYILAYDEAVNADPIWGDPFWVKMN------ 91
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
+ I+ GY + DL ++ + + V HH +S L G + L +E+
Sbjct: 92 -VAITCGYLVHDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISEL 150
Query: 168 TTPFVNLRWYLDVAG-LKSSNIYICNGVALFL 198
+TPFVN RW+ DV G +SS + NG+A+ L
Sbjct: 151 STPFVNQRWFFDVIGKPRSSWPVLLNGLAMAL 182
>sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56c PE=3 SV=1
Length = 272
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 48 KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSET 107
K Y L+ +KKLEW+ R S HAF+ L ++S + S Y D S L
Sbjct: 53 KAYTTLTEKKKLEWDQRVVSMIHAFLV----LPFCIISAVESFKYGDIFYFQNDSLL--M 106
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHH--GLSMFSIFLALVSGKAQIY--ILMVL 163
VL IS GYF+ DL +I + P L G ++H GLS +I++AL G+ + ++L
Sbjct: 107 VLSISSGYFIWDL-IICYKDPKLVGTPMIIHAIMGLSS-NIYVALPHGRPCFVPIVAILL 164
Query: 164 FTEITTPFVNLRWYLDVAGLKSS 186
TEI+T +N++ ++ V KS
Sbjct: 165 ITEISTIPLNMKGFIQVVNSKSK 187
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
Length = 245
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGI 111
+L+ + EWN R + H ++ S Y+ + + + + + L VL +
Sbjct: 25 RLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPG----SPNTPLQVHVLCL 80
Query: 112 SIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TEITTP 170
++GYF+ DL ++ G + HH LS+ I +ALV G++ + VLF +EIT P
Sbjct: 81 TLGYFIFDLGWCIYFRSE--GPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEITNP 138
Query: 171 FVNLRWYLDVAG 182
+ +RW+L G
Sbjct: 139 LLQIRWFLRETG 150
>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1
Length = 242
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 19/140 (13%)
Query: 54 SNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLF------SEDYYDELIINRTSSLSET 107
++ + EWN R + FH + + Y+ ++ + +E+ Y +++
Sbjct: 26 NSGRDSEWNCRLVTLFHGILIICLTAYIGFIAGPWPFTHPGTENTYFQIL---------- 75
Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TE 166
L +S+GYFL D+A ++ G + HH +S+F I LAL G++ I VLF +E
Sbjct: 76 TLVLSLGYFLFDMAWCVYFRTE--GPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSE 133
Query: 167 ITTPFVNLRWYLDVAGLKSS 186
IT P + RW+L G S
Sbjct: 134 ITNPLLQARWFLKRMGCYDS 153
>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum
GN=tmem56a PE=3 SV=1
Length = 258
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 51 RKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLG 110
++LS K+EW N+ +T + ++ + S Y + +++ + + T +LS+ +L
Sbjct: 41 KQLSYSSKIEWTNKIVATISSIVSFSLSCYCI-----YNKKSWVTNEMTSTCALSDFILK 95
Query: 111 ISIGYFLSDLAMILWLYPALGGLEYVLHH---GLSMFSIFLALVSGKAQIYILMVLFTEI 167
YFL D ++ Y L ++HH G+ + +++ L K + +L L EI
Sbjct: 96 FISFYFLFDALHLIIYYKQLFDWPIIIHHLVVGILSY-VYIGLYYKKVHLTLLYFLLFEI 154
Query: 168 TTPFVNLRWYLDVAGLKSSNIYICNG 193
T PF++++W+L L++ +Y NG
Sbjct: 155 TNPFIHMKWFLKDLKLENHILYSING 180
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1
Length = 245
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 53 LSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGIS 112
L+ + EW+ R + H ++ S Y+ + + + + + L VL ++
Sbjct: 26 LNKHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPG----SPNTPLQVHVLCLT 81
Query: 113 IGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TEITTPF 171
+GYF+ DL ++ G + HH LS+ I +AL G++ + VLF +EIT P
Sbjct: 82 LGYFIFDLGWCIYFQSE--GPLMLAHHTLSILGIIMALALGESGTEVNAVLFGSEITNPL 139
Query: 172 VNLRWYLDVAG 182
+ +RW+L G
Sbjct: 140 LQMRWFLRETG 150
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2
Length = 245
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGI 111
L+ + EW+ R + H ++ S Y+ + + + + + L VL +
Sbjct: 25 HLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPG----SPNTPLQVHVLCL 80
Query: 112 SIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TEITTP 170
++GYF+ DL ++ G + HH LS+ I +ALV G++ + VLF +E+T P
Sbjct: 81 TLGYFIFDLGWCVYFQSE--GALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSELTNP 138
Query: 171 FVNLRWYLDVAG 182
+ +RW+L G
Sbjct: 139 LLQMRWFLRETG 150
>sp|A8WGS4|TLCD2_DANRE TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1
Length = 246
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGI 111
+ + +WNN S H+ I S+ + +ED +I S S ++ +
Sbjct: 31 ETARRNAWKWNNISTSFVHSLITGVWSVLCFCMHPQMAED-----LIETHSVFSHALVSV 85
Query: 112 SIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPF 171
SIGYF+ D ++ + E + HH + + +++++ + + ++ L EI + F
Sbjct: 86 SIGYFIYDFLDMVINQKIIHSWELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVF 145
Query: 172 VNLRWYLDVAGLKSSNIYICNGV 194
++LR L +A L S Y N +
Sbjct: 146 LHLRQVLRMANLAKSTFYRVNSM 168
>sp|P47153|TDA4_YEAST Topoisomerase I damage affected protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TDA4 PE=1
SV=1
Length = 279
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 58 KLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFL 117
K+++N S A +++T +LL L + +Y+ ++ T S S V +S GYF+
Sbjct: 72 KIDFNVHTVSMIQAVVSNT-----VLLPTLTTPMHYN--VVTYTDSYSSMVSSLSAGYFI 124
Query: 118 SDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWY 177
DL M + Y L GLE+ H S++ + L+L Q +I L E +TPFVN+ W+
Sbjct: 125 WDLTMCV-RYFKLYGLEFTGHAIGSVYVMLLSL-RPFCQPWIGRFLIYEASTPFVNINWF 182
Query: 178 LDVAGLKSSN 187
+ KS N
Sbjct: 183 IMQCNAKSKN 192
>sp|O13752|YF22_SCHPO Uncharacterized TLC domain-containing protein C17A2.02c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.02c PE=4 SV=1
Length = 290
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 34 IVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYY 93
I+ L+ +IS Y KLS + +L W+ S+ + + L + F + +
Sbjct: 52 IINILSPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGYTCLKEVNAFPDKLF 111
Query: 94 DELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSG 153
S ++ + ++ GYF+ DL + + Y + G+ +V+H ++ ++F+ S
Sbjct: 112 GY------SVVAGDIYALTAGYFVWDLYITV-RYVHITGIGFVIH---AIAALFVITFSY 161
Query: 154 KAQI--YILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVAL 196
+ + Y L E++TPF+N+ ++LD S + NG L
Sbjct: 162 RPYLMYYGPTYLSWELSTPFLNIHYFLDKTNRTGSKFQMINGFIL 206
>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3
Length = 4624
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 12 NVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHA 71
NVS +K+ LVSV S II T K I S+ CFK Y + W
Sbjct: 1109 NVSENKEIVKLVSVLSTIINST---KKEVITSMDCFKRYNHI-------WQKGKEEAIKT 1158
Query: 72 FIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMIL 124
FI + LLS+ S+ Y + + ++ E V SI + +DL L
Sbjct: 1159 FITQSP-----LLSEFESQILYFQNLEQEINAEPEYVCVGSIALYTADLKFAL 1206
>sp|A6NGC4|TLCD2_HUMAN TLC domain-containing protein 2 OS=Homo sapiens GN=TLCD2 PE=2 SV=3
Length = 264
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 43 SVLCFKGY----RKLSNEK-----KLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYY 93
S L F+G R+L + + +W N S H+ ++ T +L L L + D
Sbjct: 12 SFLAFRGLHWGLRRLPTPESAARDRWQWWNLCVSLAHSLLSGTGALLGLSLYPQMAADP- 70
Query: 94 DELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSG 153
I+ + ++ +S+GYFL+D A +LW + + HH + + + A++SG
Sbjct: 71 ----IHGHPRWALVLVAVSVGYFLADGADLLWNQTLGKTWDLLCHHLVVVSCLSTAVLSG 126
Query: 154 KAQIYILMVLFTEITT 169
+ ++ L E+ +
Sbjct: 127 HYVGFSMVSLLLELNS 142
>sp|Q5UQN8|YL438_MIMIV Putative TLC domain-containing protein L438 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L438 PE=4 SV=1
Length = 200
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 104 LSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQI-YILMV 162
L+ +L +++ YFLSD +++ Y + Y +HH + + SI+ + + I Y+
Sbjct: 42 LTHGILMLTLVYFLSDYYLMIVKYNPKHNV-YFVHHFIGIVSIYFSYMKYYYLIKYLFAY 100
Query: 163 LFTEITTPFVNL 174
L E++TPF+N+
Sbjct: 101 LTFELSTPFLNI 112
>sp|O94275|MUG30_SCHPO Probable E3 ubiquitin-protein ligase mug30 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug30 PE=1 SV=1
Length = 807
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 83 LLSDLFSEDYYDELIINRTSSLSETVLGIS---IGYFLSDLAMILWLYPALGGLEYVLHH 139
LL ++ D+YD+ I+ + S SE + S F+S +ILW + + + H+
Sbjct: 676 LLKNVCVYDFYDQNAISNSISESEPSMTASKYLCHSFVSKRKIILWFW------DLISHY 729
Query: 140 GLSMFSIFLALVSGKAQI 157
L M +FL V+G +I
Sbjct: 730 SLKMQKLFLIFVTGSDRI 747
>sp|Q6FEC7|HIS8_ACIAD Histidinol-phosphate aminotransferase OS=Acinetobacter sp. (strain
ADP1) GN=hisC PE=3 SV=1
Length = 361
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 91 DYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLH----HGLSMFSI 146
+ YD L++ +T+S S ++ G+ +GY L+ +I LE V + + + F+I
Sbjct: 206 NQYDNLVVCQTTSKSRSLAGLRVGYALAQAHLI-------AALEAVKNSFNSYPIDRFAI 258
Query: 147 FLALVSGKAQIY 158
A+ S + Q Y
Sbjct: 259 AAAVASFEDQAY 270
>sp|Q9QUK3|CLN8_MOUSE Protein CLN8 OS=Mus musculus GN=Cln8 PE=2 SV=1
Length = 288
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Query: 50 YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVL 109
YR L+ ++K+ WN ++TA L+ LL + Y D+ + +
Sbjct: 53 YRSLAAKEKVFWNLAATRAVFGVQSTTAGLWALLGDPVL---YADKALGQQNWCWFHITT 109
Query: 110 GISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMV-LFTEIT 168
+F + + L+ L V+HH + + ++ +A Y+ M L E++
Sbjct: 110 ATGFFFFENVAVHLSNLFFRTFDLFLVVHHLFAFLGFLGSAINLRAGHYLAMTTLLLEMS 169
Query: 169 TPFVNLRWYLDVAGLKSSNIYICN 192
TPF + W L AG S + N
Sbjct: 170 TPFTCISWMLLKAGWSDSLFWKAN 193
>sp|Q58862|Y1467_METJA Uncharacterized protein MJ1467 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1467 PE=4 SV=1
Length = 184
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 88 FSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLH 138
F+ + D LI++R S+++T +I + + ++L L P +G L YV+H
Sbjct: 72 FTNNTTDALIVDRMYSIADTFENYAILSYTKNETIVLKLKP-IGDLGYVIH 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,404,703
Number of Sequences: 539616
Number of extensions: 2579786
Number of successful extensions: 8366
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 8329
Number of HSP's gapped (non-prelim): 44
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)