Query 028562
Match_columns 207
No_of_seqs 137 out of 629
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4561 Uncharacterized conser 100.0 6.3E-35 1.4E-39 242.9 -3.6 196 5-206 12-212 (281)
2 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 4.6E-28 9.9E-33 193.8 12.2 146 60-206 1-149 (198)
3 KOG4474 Uncharacterized conser 100.0 7.2E-28 1.6E-32 196.8 13.3 151 52-207 37-188 (253)
4 smart00724 TLC TRAM, LAG1 and 99.9 5.2E-27 1.1E-31 189.9 11.0 146 56-206 1-149 (205)
5 COG5058 LAG1 Protein transport 97.4 0.00011 2.4E-09 62.7 2.9 148 54-204 150-302 (395)
6 KOG1607 Protein transporter of 95.6 0.1 2.2E-06 45.0 9.3 155 49-205 77-233 (318)
7 PRK00523 hypothetical protein; 43.6 84 0.0018 21.2 5.0 33 155-187 21-58 (72)
8 COG3311 AlpA Predicted transcr 40.0 18 0.0004 24.2 1.4 28 165-192 7-34 (70)
9 PF03511 Fanconi_A: Fanconi an 30.5 31 0.00067 22.6 1.2 36 26-66 5-40 (64)
10 PF12650 DUF3784: Domain of un 28.6 65 0.0014 22.5 2.8 35 48-82 24-58 (97)
11 PF00558 Vpu: Vpu protein; In 27.7 66 0.0014 22.2 2.5 19 45-63 25-43 (81)
No 1
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.98 E-value=6.3e-35 Score=242.95 Aligned_cols=196 Identities=36% Similarity=0.550 Sum_probs=164.2
Q ss_pred hhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHh---HHhHHhhcccccCCCccccccee-eeehhHHHHHHHHHHHHH
Q 028562 5 LLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLT---GIISVLCFKGYRKLSNEKKLEWN-NRGFSTFHAFIASTASLY 80 (207)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~v~~~s---~~~s~~~~k~y~~l~~~~k~~w~-~r~vS~vHA~v~~~~al~ 80 (207)
+.|.+.++.++..+.+.+......+++++.+|... +..++...++|+++++++|++|| +|+||++|++++. +++
T Consensus 12 ~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~~--s~y 89 (281)
T KOG4561|consen 12 LTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVSS--SLY 89 (281)
T ss_pred ccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhhc--ccc
Confidence 35677889999999999999999999999999988 66665566899999999999999 9999999999988 888
Q ss_pred HHHhcCCCC-ccccccccccccChhHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHhcCchhHHH
Q 028562 81 LLLLSDLFS-EDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYI 159 (207)
Q Consensus 81 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~~~~~~~~~~l~HH~~~l~~~~~~l~~~~~~~~~ 159 (207)
+++.++.+. |....+++....+...... .|||++|+..+..+++..+|.+|++||+++..........|.+++++
T Consensus 90 ~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~~~~~~g~y~~ 165 (281)
T KOG4561|consen 90 FLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCLLRRGVGQYYA 165 (281)
T ss_pred eeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEeeeecCeeEEeeHHHHhhhheeeEecCccceee
Confidence 988777665 4344444444433332222 55999999755557778899999999998844445556678899999
Q ss_pred HHHHHHhhcchhhhHHHHHHHcCCCCChhHHHHHHHHHHHHhhhccC
Q 028562 160 LMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCM 206 (207)
Q Consensus 160 ~~~Ll~ElStpFlnlRw~l~~~g~~~s~~y~~n~~l~~~~Ff~~Ri~ 206 (207)
+.+|++|+||||+|+||+++++|+|+|++|++||++++++||++||+
T Consensus 166 ~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIl 212 (281)
T KOG4561|consen 166 GTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARIL 212 (281)
T ss_pred eeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999985
No 2
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.95 E-value=4.6e-28 Score=193.82 Aligned_cols=146 Identities=34% Similarity=0.579 Sum_probs=125.5
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHhcCCCCccccccccccccChhHHHHHHHHHHHHHHHHHHHHHhccccCC-hhHHHH
Q 028562 60 EWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGG-LEYVLH 138 (207)
Q Consensus 60 ~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~~~~~~~-~~~l~H 138 (207)
||++|++|.+||++++.+|++++..+++..++. .++...++++..+...++++|||++|+.++...+++.+| +++++|
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H 79 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDW-PDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH 79 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhc-ccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence 699999999999999999999999766322111 133445556777889999999999999999976544433 899999
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHc-CC-CCChhHHHHHHHHHHHHhhhccC
Q 028562 139 HGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVA-GL-KSSNIYICNGVALFLGWLVMSCM 206 (207)
Q Consensus 139 H~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~-g~-~~s~~y~~n~~l~~~~Ff~~Ri~ 206 (207)
|++++.++..+...+.+.+++..++++|+||||+|+||++++. |+ +++..+.+|+++++++|+++|++
T Consensus 80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~ 149 (198)
T PF03798_consen 80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIV 149 (198)
T ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888999999999999999999999999999 77 68899999999999999999985
No 3
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=7.2e-28 Score=196.79 Aligned_cols=151 Identities=25% Similarity=0.304 Sum_probs=135.4
Q ss_pred CCCcccccceeeeehhHHHHHHHHHHHHHHHHhcCCCCccccccccccccChhHHHHHHHHHHHHHHHHHHHHHhccccC
Q 028562 52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALG 131 (207)
Q Consensus 52 ~l~~~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~~~~~~ 131 (207)
.++..+|++|.|+.||++||++++.++..++..++. +.+|++...+..+..+.++|+|||+||+++|..+.+...
T Consensus 37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~-----~~~~~~~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~ 111 (253)
T KOG4474|consen 37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYDPE-----MVDDPITYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL 111 (253)
T ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhCcc-----cccCHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 567777999999999999999999999999997653 345567778889999999999999999999997654445
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHcCCC-CChhHHHHHHHHHHHHhhhccCC
Q 028562 132 GLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLK-SSNIYICNGVALFLGWLVMSCMP 207 (207)
Q Consensus 132 ~~~~l~HH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~g~~-~s~~y~~n~~l~~~~Ff~~Ri~p 207 (207)
.+++++||++++.++..++..+++..++.+.+++|+|+||+|+|.+++..|.+ +++.++++..+++.+||++|++|
T Consensus 112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~ 188 (253)
T KOG4474|consen 112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIP 188 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999999888999999999999999999999999984 55679999999999999999988
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.94 E-value=5.2e-27 Score=189.86 Aligned_cols=146 Identities=30% Similarity=0.357 Sum_probs=126.2
Q ss_pred ccccceeeeehhHHHHHHHHHHHHHHHHh-cCCCCccccccccccccChhHHHHHHHHHHHHHHHHHHHHHhccccC--C
Q 028562 56 EKKLEWNNRGFSTFHAFIASTASLYLLLL-SDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALG--G 132 (207)
Q Consensus 56 ~~k~~w~~r~vS~vHA~v~~~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~~~~~~--~ 132 (207)
+|+.||++|++|.+||++++..+++.... +|.. .++...+.++..+...++++|||++|++++...++..+ +
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~ 75 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK-----SLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDF 75 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc-----ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Confidence 57899999999999999999988877552 1111 12345678999999999999999999999986554433 7
Q ss_pred hhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHcCCCCChhHHHHHHHHHHHHhhhccC
Q 028562 133 LEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCM 206 (207)
Q Consensus 133 ~~~l~HH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~g~~~s~~y~~n~~l~~~~Ff~~Ri~ 206 (207)
++|++||++++.++..+...+....+....++.|+||||+|+||++++.|+|+++.+..|+.+++++|+++|++
T Consensus 76 ~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~ 149 (205)
T smart00724 76 KEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLI 149 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888899999999999999999999999999999999999999999986
No 5
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.00011 Score=62.69 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=93.9
Q ss_pred CcccccceeeeehhHHHHHHHHHHHHHHHHhcCCCCcc--ccccc-cccccChhHHHHHHHHHHHHHHHHHHHHH--hcc
Q 028562 54 SNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDEL-IINRTSSLSETVLGISIGYFLSDLAMILW--LYP 128 (207)
Q Consensus 54 ~~~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~s~GYF~~D~~~~~~--~~~ 128 (207)
++++..+++...-+..--.++++.|+|++..+|.+..| ...++ ..+..++.-...-.+-.||.+....+..+ ..+
T Consensus 150 s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~~~~p~lfk~fYliqaafw~qQa~ilvLqlEkp 229 (395)
T COG5058 150 SEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPVFYNPFLFKAFYLIQAAFWAQQACILVLQLEKP 229 (395)
T ss_pred CHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCccccCcHHHHHHHHHHHHHHHHHHhhheeeecch
Confidence 55555788888888888889999999998877765422 11121 22344555566666778888888544443 223
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHcCCCCChhHHHHHHHHHHHHhhhc
Q 028562 129 ALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMS 204 (207)
Q Consensus 129 ~~~~~~~l~HH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~g~~~s~~y~~n~~l~~~~Ff~~R 204 (207)
+..-.+++.||++.++-.......+..-...+....+.+|-|||.+...++-+|- ...+.+-+ +++..|.-.|
T Consensus 230 rkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~--~l~~~iF~-iFv~~wIysR 302 (395)
T COG5058 230 RKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS--VLATFIFG-IFVFIWIYSR 302 (395)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc--hhHHHHHH-HHHHHHHHHH
Confidence 3334799999999887554443322222122234469999999999988777665 33333333 5666666666
No 6
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.1 Score=45.03 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=94.4
Q ss_pred cccCCCcccccceeeeehhHHHHHHHHHHHHHHHHhcCCCCcc-ccccc-cccccChhHHHHHHHHHHHHHHHHHHHHHh
Q 028562 49 GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED-YYDEL-IINRTSSLSETVLGISIGYFLSDLAMILWL 126 (207)
Q Consensus 49 ~y~~l~~~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~ 126 (207)
.++.-+++++....+..=..+-=.++.+.|++++..++-+.+. ...++ ......+.-...-.+-+||-..-+......
T Consensus 77 ~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~d 156 (318)
T KOG1607|consen 77 RLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPDQTLPPSFKAYYLLEAGFYIQLLFALFLD 156 (318)
T ss_pred hcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 4444455555666666667777788888999998864433321 11111 112234555666677788888888777754
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHcCCCCChhHHHHHHHHHHHHhhhcc
Q 028562 127 YPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSC 205 (207)
Q Consensus 127 ~~~~~~~~~l~HH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~g~~~s~~y~~n~~l~~~~Ff~~Ri 205 (207)
.++..-.++++||+++++-...+...+..-.......+...|-++|-+..+++-.|.+ .+-...=.+++..|+..|+
T Consensus 157 ~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~RL 233 (318)
T KOG1607|consen 157 EKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTRL 233 (318)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHHH
Confidence 4433347899999988875444433222222223344589999999998777666554 2333344466777777774
No 7
>PRK00523 hypothetical protein; Provisional
Probab=43.60 E-value=84 Score=21.17 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=24.5
Q ss_pred hhHHHHHHHH-Hhhc-chhhh---HHHHHHHcCCCCCh
Q 028562 155 AQIYILMVLF-TEIT-TPFVN---LRWYLDVAGLKSSN 187 (207)
Q Consensus 155 ~~~~~~~~Ll-~ElS-tpFln---lRw~l~~~g~~~s~ 187 (207)
+++|..-..+ -|+. ||.+| +|-++.+.|+|.|-
T Consensus 21 ~Gffiark~~~k~l~~NPpine~mir~M~~QMGqKPSe 58 (72)
T PRK00523 21 IGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPSE 58 (72)
T ss_pred HHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHhCCCccH
Confidence 4555555555 7777 99998 68889999998765
No 8
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=39.98 E-value=18 Score=24.23 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.7
Q ss_pred HhhcchhhhHHHHHHHcCCCCChhHHHH
Q 028562 165 TEITTPFVNLRWYLDVAGLKSSNIYICN 192 (207)
Q Consensus 165 ~ElStpFlnlRw~l~~~g~~~s~~y~~n 192 (207)
++.+++++.++..++++|+..+.+|+..
T Consensus 7 ~~~~~r~lrl~ev~~~~GlSrstiYr~i 34 (70)
T COG3311 7 MRHTDRLLRLPEVAQLTGLSRSTIYRLI 34 (70)
T ss_pred ccccchhhhHHHHHHHHCccHHHHHHHH
Confidence 5778999999999999999988888764
No 9
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=30.52 E-value=31 Score=22.56 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhHHhHHhhcccccCCCcccccceeeeeh
Q 028562 26 FSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGF 66 (207)
Q Consensus 26 ~~s~~~~~~v~~~s~~~s~~~~k~y~~l~~~~k~~w~~r~v 66 (207)
+.+++||.++-.+|..+.|+ ...+..+..||+..+.
T Consensus 5 LvsLfFFSLM~LlSs~l~p~-----~~~d~~kaldiCaeIL 40 (64)
T PF03511_consen 5 LVSLFFFSLMGLLSSYLAPK-----EGADSLKALDICAEIL 40 (64)
T ss_pred HHHHHHHHHHHHHHHhcCcc-----cccccHHHHHHHHHHH
Confidence 55788888888788777664 3456666777776543
No 10
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=28.60 E-value=65 Score=22.47 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=24.8
Q ss_pred ccccCCCcccccceeeeehhHHHHHHHHHHHHHHH
Q 028562 48 KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLL 82 (207)
Q Consensus 48 k~y~~l~~~~k~~w~~r~vS~vHA~v~~~~al~~l 82 (207)
..|+.+|++||.+.|.+-.+-.-+......|+..+
T Consensus 24 aGyntms~eEk~~~D~~~l~r~~g~~~~~~~i~~l 58 (97)
T PF12650_consen 24 AGYNTMSKEEKEKYDKKKLCRFMGKFMLIIGIILL 58 (97)
T ss_pred hhcccCCHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999876655555555555554443
No 11
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=27.72 E-value=66 Score=22.22 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=4.1
Q ss_pred hhcccccCCCcccccceee
Q 028562 45 LCFKGYRKLSNEKKLEWNN 63 (207)
Q Consensus 45 ~~~k~y~~l~~~~k~~w~~ 63 (207)
..++.|++..+++|+++-.
T Consensus 25 iv~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 25 IVYIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp HH------------CHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3457899999888887753
Done!