Query 028562
Match_columns 207
No_of_seqs 137 out of 629
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9p_A Pheromone alpha factor 29.6 36 0.0012 22.4 2.5 23 176-200 40-62 (80)
2 2knc_A Integrin alpha-IIB; tra 15.0 2.1E+02 0.0074 17.2 5.7 31 9-39 3-33 (54)
3 2lx0_A Membrane fusion protein 10.8 2.1E+02 0.0072 14.7 2.8 20 184-203 2-21 (32)
4 1i11_A Transcription factor SO 5.7 1.4E+02 0.0049 18.7 0.3 22 42-63 35-56 (81)
5 1ckt_A High mobility group 1 p 5.5 1.2E+02 0.004 18.5 -0.3 21 42-62 34-54 (71)
6 2ls4_A High affinity copper up 7.7 1.3E+02 0.0045 15.3 0.0 12 108-119 10-21 (26)
7 2lhj_A High mobility group pro 5.0 2.4E+02 0.0082 18.4 1.1 22 42-63 55-76 (97)
8 2ksd_A Aerobic respiration con 4.8 3.5E+02 0.012 18.9 1.8 28 57-84 48-75 (115)
9 1hry_A Human SRY; DNA, DNA-bin 4.8 1E+02 0.0035 19.1 -0.9 22 42-63 35-56 (76)
10 2yvc_D Neprilysin; protein-pep 4.6 1.9E+02 0.0064 14.4 0.2 10 54-63 16-25 (26)
No 1
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=29.63 E-value=36 Score=22.44 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=17.5
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHHH
Q 028562 176 WYLDVAGLKSSNIYICNGVALFLGW 200 (207)
Q Consensus 176 w~l~~~g~~~s~~y~~n~~l~~~~F 200 (207)
|++.| +|.|+++.+|+..+++..
T Consensus 40 ~lltk--krrspiF~lN~~~L~l~i 62 (80)
T 2k9p_A 40 WITSR--SRKTPIFIINQVSLFLII 62 (80)
T ss_dssp HHHTC--CSCCCHHHHHHHHHHHHH
T ss_pred HHHhc--cccChhhHHHHHHHHHHH
Confidence 54444 678999999999987654
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.95 E-value=2.1e+02 Score=17.17 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=18.8
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHHHHHHh
Q 028562 9 MADNVSPSKQFYWLVSVFSGIIMCTIVYKLT 39 (207)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~s~~~~~~v~~~s 39 (207)
|.+.-.....++...+++++++...++-.+-
T Consensus 3 ~~~~~~~vp~wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 3 MGSEERAIPIWWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp TTCTTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666778888877766554443
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=10.76 E-value=2.1e+02 Score=14.73 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=15.2
Q ss_pred CCChhHHHHHHHHHHHHhhh
Q 028562 184 KSSNIYICNGVALFLGWLVM 203 (207)
Q Consensus 184 ~~s~~y~~n~~l~~~~Ff~~ 203 (207)
|++.+-.+.|+.-+++|+.+
T Consensus 2 khtiweviaglvalltflaf 21 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAF 21 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 56677788888888888765
No 4
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=5.75 E-value=1.4e+02 Score=18.71 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=16.3
Q ss_pred hHHhhcccccCCCcccccceee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWNN 63 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (207)
+++.+.+.|++|++++|..|..
T Consensus 35 isk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 35 ISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHhhhhhCCHHHHHHHHH
Confidence 5666667889999888876643
No 5
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=5.53 E-value=1.2e+02 Score=18.47 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=15.3
Q ss_pred hHHhhcccccCCCccccccee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWN 62 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~ 62 (207)
+++.+.+.|++|++++|..|.
T Consensus 34 isk~lg~~Wk~ls~~eK~~y~ 54 (71)
T 1ckt_A 34 FSKKCSERWKTMSAKEKGKFE 54 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHH
Confidence 566666788999988876553
No 6
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=7.69 E-value=1.3e+02 Score=15.26 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 028562 108 VLGISIGYFLSD 119 (207)
Q Consensus 108 ~~~~s~GYF~~D 119 (207)
++.-.+|||+++
T Consensus 10 vlGa~~Gyf~F~ 21 (26)
T 2ls4_A 10 AAGAGTGYFLFS 21 (26)
Confidence 445567888764
No 7
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=5.00 E-value=2.4e+02 Score=18.38 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=16.5
Q ss_pred hHHhhcccccCCCcccccceee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWNN 63 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (207)
+++.+.+.|++|++++|..|..
T Consensus 55 isk~lg~~Wk~ls~eeK~~Y~~ 76 (97)
T 2lhj_A 55 IGKMIGAAWNALSDEEKKPYER 76 (97)
T ss_dssp HHHHHHHTSSSSCSTTTSSSSH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 5566667889999888877654
No 8
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=4.82 E-value=3.5e+02 Score=18.94 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.7
Q ss_pred cccceeeeehhHHHHHHHHHHHHHHHHh
Q 028562 57 KKLEWNNRGFSTFHAFIASTASLYLLLL 84 (207)
Q Consensus 57 ~k~~w~~r~vS~vHA~v~~~~al~~l~~ 84 (207)
.+++|..-+-|.+-+.+++++++|.+..
T Consensus 48 G~v~~~Di~rsI~Fgli~aP~viYFls~ 75 (115)
T 2ksd_A 48 GQVESIDVIRSIFFGLLITPWAVYFLSV 75 (115)
T ss_dssp CCSSSSSCCSTTTHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999774
No 9
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=4.80 E-value=1e+02 Score=19.10 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=15.7
Q ss_pred hHHhhcccccCCCcccccceee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWNN 63 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (207)
+++.+.+.|++|++++|..|..
T Consensus 35 isk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 35 ISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhHHHhCCHHHHHHHHH
Confidence 5566667888999888766643
No 10
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=4.62 E-value=1.9e+02 Score=14.37 Aligned_cols=10 Identities=20% Similarity=0.096 Sum_probs=6.6
Q ss_pred Ccccccceee
Q 028562 54 SNEKKLEWNN 63 (207)
Q Consensus 54 ~~~~k~~w~~ 63 (207)
.||+|.+|+.
T Consensus 16 kpkkk~rws~ 25 (26)
T 2yvc_D 16 KPKKKQRXXX 25 (26)
T ss_pred Ccchhhcccc
Confidence 4667777763
Done!