Query 028562
Match_columns 207
No_of_seqs 137 out of 629
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 22:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028562.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028562hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i11a_ a.21.1.1 (A:) Sox-5 {M 9.8 34 0.0025 19.8 0.3 22 42-63 33-54 (70)
2 d2lefa_ a.21.1.1 (A:) Lymphoid 8.1 29 0.0021 21.1 -0.6 23 42-64 33-55 (86)
3 d1hsma_ a.21.1.1 (A:) High mob 6.9 43 0.0031 19.7 -0.2 23 42-64 33-55 (79)
4 d1ckta_ a.21.1.1 (A:) High mob 6.8 42 0.0031 19.2 -0.3 22 42-63 34-55 (71)
5 d1jb0m_ f.23.19.1 (M:) Subunit 5.6 1.6E+02 0.012 14.0 1.7 23 183-205 3-25 (31)
6 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 5.1 52 0.0038 19.6 -0.6 23 42-64 33-55 (80)
7 d1j46a_ a.21.1.1 (A:) SRY {Hum 5.0 54 0.0039 19.6 -0.6 22 42-63 35-56 (85)
8 d1v54m_ f.23.7.1 (M:) Mitochon 4.9 2.7E+02 0.019 14.5 2.7 33 19-52 9-42 (43)
9 d1rp4a_ a.227.1.1 (A:) Endopla 3.3 2E+02 0.015 22.4 1.5 18 64-81 172-189 (374)
10 d1ppjg_ f.23.13.1 (G:) Ubiquin 3.2 3.4E+02 0.025 15.8 2.2 22 103-124 44-65 (75)
No 1
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.78 E-value=34 Score=19.82 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=16.5
Q ss_pred hHHhhcccccCCCcccccceee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWNN 63 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (207)
+++.+.+.|++|++++|..|..
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~ 54 (70)
T d1i11a_ 33 ISKILGSRWKAMTNLEKQPYYE 54 (70)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 5566667889999988876654
No 2
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.12 E-value=29 Score=21.08 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=18.3
Q ss_pred hHHhhcccccCCCcccccceeee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWNNR 64 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~r 64 (207)
+++.+.+.|++|++++|..|...
T Consensus 33 Isk~lg~~Wk~ls~~eK~~y~~~ 55 (86)
T d2lefa_ 33 INQILGRRWHALSREEQAKYYEL 55 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 66667788999999998887753
No 3
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=6.90 E-value=43 Score=19.71 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=17.0
Q ss_pred hHHhhcccccCCCcccccceeee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWNNR 64 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~r 64 (207)
+++.+.+.|++|++++|..|..+
T Consensus 33 i~k~~~~~W~~ls~~eK~~y~~~ 55 (79)
T d1hsma_ 33 VAKKLGEMWNNTAADDKQPYEKK 55 (79)
T ss_dssp HHHHHHHHHHTSCSTTTHHHHHH
T ss_pred HHHHHhhHHhcCCHHHHHHHHHH
Confidence 45556678899999888777643
No 4
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.81 E-value=42 Score=19.23 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=16.3
Q ss_pred hHHhhcccccCCCcccccceee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWNN 63 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (207)
+++.+.+.|++|++.+|..|..
T Consensus 34 i~k~~~~~Wk~ls~~eK~~y~~ 55 (71)
T d1ckta_ 34 FSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4556667889999988877654
No 5
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=5.62 E-value=1.6e+02 Score=14.03 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=16.9
Q ss_pred CCCChhHHHHHHHHHHHHhhhcc
Q 028562 183 LKSSNIYICNGVALFLGWLVMSC 205 (207)
Q Consensus 183 ~~~s~~y~~n~~l~~~~Ff~~Ri 205 (207)
..++.+|..-.++++-.+..+|+
T Consensus 3 lsdtqv~valvial~pg~lafrl 25 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAVLAFRL 25 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888888876
No 6
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.13 E-value=52 Score=19.59 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=17.2
Q ss_pred hHHhhcccccCCCcccccceeee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWNNR 64 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~r 64 (207)
+++.+...|++|++++|..|..+
T Consensus 33 isk~~g~~W~~l~~eeK~~y~~~ 55 (80)
T d1gt0d_ 33 ISKRLGAEWKLLSETEKRPFIDE 55 (80)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCHHHHHHHHHH
Confidence 56666678899999888777643
No 7
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.99 E-value=54 Score=19.65 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=17.0
Q ss_pred hHHhhcccccCCCcccccceee
Q 028562 42 ISVLCFKGYRKLSNEKKLEWNN 63 (207)
Q Consensus 42 ~s~~~~k~y~~l~~~~k~~w~~ 63 (207)
+++.+.+.|++|++++|..|..
T Consensus 35 isk~ig~~W~~L~~eeK~~y~~ 56 (85)
T d1j46a_ 35 ISKQLGYQWKMLTEAEKWPFFQ 56 (85)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 5666667889999988877765
No 8
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.89 E-value=2.7e+02 Score=14.55 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hHHhHHhhcccccC
Q 028562 19 FYWLVSVFSGIIMCTIVYKL-TGIISVLCFKGYRK 52 (207)
Q Consensus 19 ~~~~~~i~~s~~~~~~v~~~-s~~~s~~~~k~y~~ 52 (207)
.+.......++..|++-+.. +.++.+.+ +.|++
T Consensus 9 ~ls~~E~aigLt~~f~~~L~PaGwVLshL-e~YKk 42 (43)
T d1v54m_ 9 PTSPKEQAIGLSVTFLSFLLPAGWVLYHL-DNYKK 42 (43)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHccHHHHHHHH-HHhcc
Confidence 44555556667777666665 44543332 45543
No 9
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.35 E-value=2e+02 Score=22.38 Aligned_cols=18 Identities=39% Similarity=0.298 Sum_probs=14.6
Q ss_pred eehhHHHHHHHHHHHHHH
Q 028562 64 RGFSTFHAFIASTASLYL 81 (207)
Q Consensus 64 r~vS~vHA~v~~~~al~~ 81 (207)
|++|.+||.|++=++--.
T Consensus 172 rlISGlHsSIs~Hl~~~y 189 (374)
T d1rp4a_ 172 RLVSGFHASIGTHLSKEY 189 (374)
T ss_dssp HHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 899999999998765443
No 10
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.24 E-value=3.4e+02 Score=15.80 Aligned_cols=22 Identities=5% Similarity=-0.064 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 028562 103 SLSETVLGISIGYFLSDLAMIL 124 (207)
Q Consensus 103 ~~~~~~~~~s~GYF~~D~~~~~ 124 (207)
+.-..+.-+.++|.+||-..--
T Consensus 44 ~~l~v~PPfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 44 CILRVAPPFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hceEEcCHHHHHHHHHHHHHHH
Confidence 3445667788999999975543
Done!